GENERAL-INFO-START
        seq-file KeepLoci.gphocs
        trace-file Trace_awbrP63.log
        mcmc-iterations 300000
        random-seed 63
        #
        find-finetunes  TRUE
        find-finetunes-samples-per-step 1000
        tau-theta-alpha 1.0
        tau-theta-beta  100 # per pop as theta and tau have diff means
        tau-theta-print 100

        start-mig      1
        mig-rate-alpha 0.002
        mig-rate-beta  .00001
        mig-rate-print 0.1
GENERAL-INFO-END
CURRENT-POPS-START
        POP-START
                name Cydno
                samples Cy_PA1 d Cy_PA2 d
        POP-END 
        POP-START
                name NumataA
                samples Nu_Arc_PR2 d Nu_Aur_PR2 d
        POP-END
        POP-START
                        name NumataB
                samples Nu_BR2 d Nu_BR4 d
        POP-END
        POP-START
                name Pardalinus
                samples Pa_Ssp_PR1 d Pa_Ssp_PR3 d
        POP-END
        POP-START
                name Elevatus
                samples El_PR1 d El_PR3 d
        POP-END
        POP-START
                name Ismenius
                samples Is_Bou_PA2 d Is_Bou_PA3 d
        POP-END
CURRENT-POPS-END
ANCESTRAL-POPS-START
        POP-START
                name Numata
                tau-initial 0.00002
                children NumataA NumataB
        POP-END
        POP-START
                name PE
                tau-initial 0.00001
                children Pardalinus Elevatus
        POP-END
        POP-START
                name IN
                tau-initial 0.00002
                children Ismenius Numata
        POP-END
        POP-START
                name PEIN
                tau-initial 0.00003
                children PE IN
        POP-END
        POP-START
                name CPEIN
                tau-initial 0.0003
                children PEIN Cydno 
        POP-END
ANCESTRAL-POPS-END
MIG-BANDS-START
        BAND-START
                source NumataA
                target Pardalinus
        BAND-END
        BAND-START
                source Pardalinus
                target NumataA
        BAND-END
        BAND-START
                source NumataB
                target Pardalinus
        BAND-END
        BAND-START
                source Pardalinus
                target NumataB
        BAND-END
        BAND-START
                source Pardalinus
                target Ismenius
        BAND-END
        BAND-START
                source Ismenius
                target Pardalinus
        BAND-END
MIG-BANDS-END