Modular Image Analysis
A Fiji plugin providing a modular framework for assembling image and object analysis pipelines
Automated
Workflows can be automated from initial image loading through processing, object detection, measurement extraction, visualisation, and data exporting
Modular
Near 200 modules integrated with key Fiji plugins such as BioFormats, TrackMate and Weka Trainable Segmentation
High throughput
Workflows are, by default, compatible with batch processing multiple files within a single folder
Compatible
Designed for compatibility with spatially-calibrated 5D images, yielding image and object measurements in both pixel and physical units
Extensible
Functionality can be extended via integration with Fiji’s scripting interface or with Java classes that extend the core MIA framework
MIA is a Fiji plugin which provides a modular framework for assembling image and object analysis pipelines. Detected objects can be transformed, filtered, measured and related. Analysis pipelines are batch-enabled by default, allowing easy processing of high-content datasets.
MIA is developed in the Wolfson Bioimaging Facility at the University of Bristol.