Circle detection

Detects circles within grayscale images using the Hough transform.

Identify objects

Creates objects from an input binary image.

Manually identify objects

Manually create objects using the ImageJ selection tools.

Rectangle detection

Detects rectangles within grayscale images using the Hough transform.

Ridge detection

Detects ridge objects in an image from the workspace.

Run TrackMate

Uses the TrackMate plugin included with Fiji to detect and track spots in images.

Sphere detection

Detects spheres within grayscale images using the Hough transform.

Spot detection

Detects spot-like features in 2D and 3D using TrackMate's LogDetector.