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Stan
2.10.0
probability, sampling & optimization
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Classes | |
class | mcmc_writer |
mcmc_writer writes out headers and samples More... | |
Functions | |
template<class Model , class RNG , class StartTransitionCallback , class SampleRecorder , class DiagnosticRecorder , class MessageRecorder > | |
void | generate_transitions (stan::mcmc::base_mcmc *sampler, const int num_iterations, const int start, const int finish, const int num_thin, const int refresh, const bool save, const bool warmup, stan::services::sample::mcmc_writer< Model, SampleRecorder, DiagnosticRecorder, MessageRecorder > &mcmc_writer, stan::mcmc::sample &init_s, Model &model, RNG &base_rng, const std::string &prefix, const std::string &suffix, std::ostream &o, StartTransitionCallback &callback, interface_callbacks::writer::base_writer &info_writer, interface_callbacks::writer::base_writer &error_writer) |
template<class Sampler > | |
bool | init_adapt (Sampler *sampler, const double delta, const double gamma, const double kappa, const double t0, const Eigen::VectorXd &cont_params, interface_callbacks::writer::base_writer &info_writer, interface_callbacks::writer::base_writer &error_writer) |
template<class Sampler > | |
bool | init_adapt (stan::mcmc::base_mcmc *sampler, categorical_argument *adapt, const Eigen::VectorXd &cont_params, interface_callbacks::writer::base_writer &info_writer, interface_callbacks::writer::base_writer &error_writer) |
template<class Sampler > | |
bool | init_nuts (stan::mcmc::base_mcmc *sampler, stan::services::argument *algorithm) |
template<class Sampler > | |
bool | init_softabs (stan::mcmc::base_mcmc *sampler, stan::services::argument *algorithm) |
template<class Sampler > | |
bool | init_static_hmc (stan::mcmc::base_mcmc *sampler, stan::services::argument *algorithm) |
template<class Sampler > | |
bool | init_windowed_adapt (stan::mcmc::base_mcmc *sampler, stan::services::categorical_argument *adapt, unsigned int num_warmup, const Eigen::VectorXd &cont_params, interface_callbacks::writer::base_writer &info_writer, interface_callbacks::writer::base_writer &error_writer) |
template<class Sampler > | |
bool | init_xhmc (stan::mcmc::base_mcmc *sampler, stan::services::argument *algorithm) |
void | progress (const int m, const int start, const int finish, const int refresh, const bool warmup, const std::string prefix, const std::string suffix, std::ostream &o) |
void stan::services::sample::generate_transitions | ( | stan::mcmc::base_mcmc * | sampler, |
const int | num_iterations, | ||
const int | start, | ||
const int | finish, | ||
const int | num_thin, | ||
const int | refresh, | ||
const bool | save, | ||
const bool | warmup, | ||
stan::services::sample::mcmc_writer< Model, SampleRecorder, DiagnosticRecorder, MessageRecorder > & | mcmc_writer, | ||
stan::mcmc::sample & | init_s, | ||
Model & | model, | ||
RNG & | base_rng, | ||
const std::string & | prefix, | ||
const std::string & | suffix, | ||
std::ostream & | o, | ||
StartTransitionCallback & | callback, | ||
interface_callbacks::writer::base_writer & | info_writer, | ||
interface_callbacks::writer::base_writer & | error_writer | ||
) |
Definition at line 17 of file generate_transitions.hpp.
bool stan::services::sample::init_adapt | ( | Sampler * | sampler, |
const double | delta, | ||
const double | gamma, | ||
const double | kappa, | ||
const double | t0, | ||
const Eigen::VectorXd & | cont_params, | ||
interface_callbacks::writer::base_writer & | info_writer, | ||
interface_callbacks::writer::base_writer & | error_writer | ||
) |
Definition at line 16 of file init_adapt.hpp.
bool stan::services::sample::init_adapt | ( | stan::mcmc::base_mcmc * | sampler, |
categorical_argument * | adapt, | ||
const Eigen::VectorXd & | cont_params, | ||
interface_callbacks::writer::base_writer & | info_writer, | ||
interface_callbacks::writer::base_writer & | error_writer | ||
) |
Definition at line 46 of file init_adapt.hpp.
bool stan::services::sample::init_nuts | ( | stan::mcmc::base_mcmc * | sampler, |
stan::services::argument * | algorithm | ||
) |
Definition at line 14 of file init_nuts.hpp.
bool stan::services::sample::init_softabs | ( | stan::mcmc::base_mcmc * | sampler, |
stan::services::argument * | algorithm | ||
) |
Definition at line 14 of file init_softabs.hpp.
bool stan::services::sample::init_static_hmc | ( | stan::mcmc::base_mcmc * | sampler, |
stan::services::argument * | algorithm | ||
) |
Definition at line 14 of file init_static_hmc.hpp.
bool stan::services::sample::init_windowed_adapt | ( | stan::mcmc::base_mcmc * | sampler, |
stan::services::categorical_argument * | adapt, | ||
unsigned int | num_warmup, | ||
const Eigen::VectorXd & | cont_params, | ||
interface_callbacks::writer::base_writer & | info_writer, | ||
interface_callbacks::writer::base_writer & | error_writer | ||
) |
Definition at line 17 of file init_windowed_adapt.hpp.
bool stan::services::sample::init_xhmc | ( | stan::mcmc::base_mcmc * | sampler, |
stan::services::argument * | algorithm | ||
) |
Definition at line 14 of file init_xhmc.hpp.
void stan::services::sample::progress | ( | const int | m, |
const int | start, | ||
const int | finish, | ||
const int | refresh, | ||
const bool | warmup, | ||
const std::string | prefix, | ||
const std::string | suffix, | ||
std::ostream & | o | ||
) |
Definition at line 14 of file progress.hpp.