be.ac.ulb.mlg.utils.measure

Class VarianceOfLogRatios

java.lang.Object

be.ac.ulb.mlg.utils.measure.VarianceOfLogRatios

All Implemented Interfaces:

Measure

public class VarianceOfLogRatios
extends java.lang.Object
implements Measure

Variance of log ratios scaled to [0;1]: 1-exp(-sqrt(D(x,y))) according to Aitchison where D(X,Y) is the Variance of log ratios.

Version:

1.2, 18/08/2015

Author:

Jean-Sébastien Lerat

Field Summary

Fields inherited from interface be.ac.ulb.mlg.utils.Measure

ERROR_VALUE

Constructor Summary

Constructors

Constructor and Description
VarianceOfLogRatios()

Method Summary

Modifier and Type	Method and Description
boolean	hasNativeImplementation() Know if the measure owns a native implementation
double	measure(double[] A, double[] B, boolean[] computable) Compute the measure between two data vectors
boolean	requireDataTransformation() Know if the measure need to transform input data (input data are copied to be preserved)
void	transform(double[][] data) The transformation method called before measurement

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VarianceOfLogRatios

public VarianceOfLogRatios()

Method Detail

measure

public double measure(double[] A,
                      double[] B,
                      boolean[] computable)

Description copied from interface: Measure

Compute the measure between two data vectors

Specified by:

measure in interface Measure

Parameters:

A - The first data vector

B - The second data vector

computable - Boolean vector set to true except for indexes they must be ignored during the measurement

Returns:

The measure between a and b

hasNativeImplementation

public boolean hasNativeImplementation()

Description copied from interface: Measure

Know if the measure owns a native implementation

Specified by:

hasNativeImplementation in interface Measure

Returns:

True if the measure is also natively implemented

requireDataTransformation

public boolean requireDataTransformation()

Description copied from interface: Measure

Know if the measure need to transform input data (input data are copied to be preserved)

Specified by:

requireDataTransformation in interface Measure

Returns:

True if the input data require some transformation

transform

public void transform(double[][] data)

Description copied from interface: Measure

The transformation method called before measurement

Specified by:

transform in interface Measure

Parameters:

data - An input data vector to be measured