Ontology Diff Report

Original Ontology

• IRI: http://purl.obolibrary.org/obo/ro.owl
• VersionIRI: http://purl.obolibrary.org/obo/ro/releases/2014-02-28/ro.owl

New Ontology

• IRI: http://purl.obolibrary.org/obo/ro.owl
• VersionIRI: http://purl.obolibrary.org/obo/ro/releases/2014-05-03/ro.owl

Report for classes

Class objects lost from source: 0

Class objects new in target: 16

New Class : quality

• quality SubClassOf specifically dependent continuant
• quality label quality

New Class : mutualism

• mutualism SubClassOf ObjectHasSelf( )
• mutualism SubClassOf symbiosis, encompassing mutualism through parasitism
• mutualism label mutualism

New Class : commensalism

• commensalism SubClassOf ObjectHasSelf( )
• commensalism SubClassOf symbiosis, encompassing mutualism through parasitism
• commensalism label commensalism

New Class : immaterial entity

• immaterial entity label immaterial entity
• immaterial entity SubClassOf independent continuant

New Class : quality

• quality OBO foundry unique label quality (PATO)
• quality label quality
• quality SubClassOf specifically dependent continuant

New Class : specifically dependent continuant

• specifically dependent continuant SubClassOf dependent continuant
• specifically dependent continuant definition A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
• specifically dependent continuant label specifically dependent continuant

New Class : nucleus

• nucleus imported from http://purl.obolibrary.org/obo/go.owl
• nucleus label nucleus
• nucleus SubClassOf cell part

New Class : dependent continuant

• dependent continuant definition A continuant that is either dependent on one or other independent continuant bearers or inheres in or is borne by other entities.
• dependent continuant label dependent continuant
• dependent continuant SubClassOf continuant

New Class : kinase activity

• kinase activity SubClassOf ObjectHasSelf( )
• kinase activity label kinase activity
• kinase activity SubClassOf transferase activity, transferring phosphorus-containing groups

New Class : ubiquitin-protein ligase activity

• ubiquitin-protein ligase activity SubClassOf small conjugating protein ligase activity
• ubiquitin-protein ligase activity label ubiquitin-protein ligase activity
• ubiquitin-protein ligase activity SubClassOf ObjectHasSelf( )

New Class : molecular_function

• molecular function OBO foundry unique label molecular process
• molecular function SubClassOf process
• molecular function label molecular_function

New Class : morphology

• morphology SubClassOf physical object quality
• morphology SubClassOf quality
• morphology label morphology

New Class : parasitism

• parasitism label parasitism
• parasitism SubClassOf symbiosis, encompassing mutualism through parasitism
• parasitism SubClassOf ObjectHasSelf( )

New Class : linear

• linear label linear
• linear SubClassOf shape

New Class : symbiosis, encompassing mutualism through parasitism

• symbiosis, encompassing mutualism through parasitism SubClassOf ObjectHasSelf( )
• symbiosis, encompassing mutualism through parasitism label symbiosis, encompassing mutualism through parasitism
• symbiosis, encompassing mutualism through parasitism SubClassOf interspecies interaction between organisms

New Class : biological_process

• biological process SubClassOf process
• biological process label biological_process

Changed Class objects: 2

Changes for: habitat

• Deleted
  • - habitat SubClassOf independent continuant
• Added
  • + habitat SubClassOf material entity

Changes for: laminar

• Added
  • + laminar SubClassOf structure
  • + laminar label laminar

Report for properties

ObjectProperty objects lost from source: 0

ObjectProperty objects new in target: 64

New ObjectProperty : is symbiosis

• SubObjectPropertyOf( is symbiosis helper property )
• is symbiosis label is symbiosis

New ObjectProperty : is commensalism

• SubObjectPropertyOf( is commensalism is symbiosis )
• is commensalism label is commensalism

New ObjectProperty : is mutualism

• is mutualism label is mutualism
• SubObjectPropertyOf( is mutualism is symbiosis )

New ObjectProperty : is parasitism

• is parasitism label is parasitism
• SubObjectPropertyOf( is parasitism is symbiosis )

New ObjectProperty : provides nutrients for

• SubObjectPropertyOf( provides nutrients for trophically interacts with )
• InverseObjectProperties( provides nutrients for acquires nutrients from )
• provides nutrients for label provides nutrients for

New ObjectProperty : has vector

• SubObjectPropertyOf( has vector biotically interacts with )
• has vector label has vector
• InverseObjectProperties( is vector for has vector )

New ObjectProperty : partner in

• partner in curator note Experimental: relation used for defining interaction relations. An interaction relation holds when there is an interaction event with two partners. In a directional interaction, one partner is deemed the subject, the other the target
• partner in label partner in
• SubObjectPropertyOf( partner in participates in )

New ObjectProperty : subject participant in

• subject participant in label subject participant in
• SubObjectPropertyOf( subject participant in partner in )

New ObjectProperty : target participant in

• target participant in label target participant in
• SubObjectPropertyOf( target participant in partner in )

New ObjectProperty : helper property

• helper property label helper property
• helper property curator note This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.

New ObjectProperty : pollinated by

• InverseObjectProperties( pollinated by pollinates )
• pollinated by label pollinated by
• SubObjectPropertyOf( pollinated by mutualistically interacts with )

New ObjectProperty : acquires nutrients from

• InverseObjectProperties( provides nutrients for acquires nutrients from )
• acquires nutrients from label acquires nutrients from
• SubObjectPropertyOf( acquires nutrients from trophically interacts with )
• acquires nutrients from curator note Intended to be used when the target of the relation is not itself consumed, and does not have integral parts consumed, but provided nutrients in some other fashion.

New ObjectProperty : has host

• has host label has host
• DisjointObjectProperties( host of has host )
• SubObjectPropertyOf( has host symbiotically interacts with )

New ObjectProperty : pollinates

• pollinates label pollinates
• InverseObjectProperties( pollinated by pollinates )
• SubObjectPropertyOf( pollinates mutualistically interacts with )
• pollinates editor note This relation is intended to be used for biotic pollination - e.g. a bee pollinating a flowering plant. Some kinds of pollination may be semibiotic - e.g. wind can have the role of pollinator. We would use a separate relation for this.
• pollinates example of usage Bees pollinate Flowers

New ObjectProperty : preyed upon by

• SubObjectPropertyOf( preyed upon by trophically interacts with )
• InverseObjectProperties( preyed upon by preys on )
• preyed upon by label preyed upon by

New ObjectProperty : is vector for

• is vector for label is vector for
• is vector for example of usage Anopheles is a vector for Plasmodium
• SubObjectPropertyOf( is vector for biotically interacts with )
• is vector for definition source a is a vector for b if a carries and transmits an infectious pathogen b into another living organism
• InverseObjectProperties( is vector for has vector )

New ObjectProperty : has symptom

• has symptom label has symptom

New ObjectProperty : host of

• host of curator note The term host is usually used for the larger (macro) of the two members of a symbiosis (GO)
• SubObjectPropertyOf( host of symbiotically interacts with )
• host of label host of
• DisjointObjectProperties( host of has host )

New ObjectProperty : molecularly increases activity of

• molecularly increases activity of definition Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b.
• molecularly increases activity of label molecularly increases activity of
• SubObjectPropertyOf( molecularly increases activity of molecularly controls )

New ObjectProperty : transmitted by

• transmitted by label transmitted by
• transmitted by example of usage all dengue disease transmitted by some mosquito

New ObjectProperty : phosphorylates

• phosphorylates alternative term An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.
• phosphorylates editor note Axiomatization to GO to be added later
• phosphorylates label phosphorylates
• SubObjectPropertyOf( phosphorylates molecularly interacts with )

New ObjectProperty : molecularly controls

• SubObjectPropertyOf( molecularly controls molecularly interacts with )
• molecularly controls label molecularly controls
• molecularly controls definition a molecularly controls b if the execution of a activates or inhibits the activity of b

New ObjectProperty : molecularly decreases activity of

• molecularly decreases activity of definition Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b.
• molecularly decreases activity of label molecularly decreases activity of
• SubObjectPropertyOf( molecularly decreases activity of molecularly controls )

New ObjectProperty : interacts with via parasite-host interaction

• interacts with via parasite-host interaction curator note This relation groups a pair of inverse relations, parasite of and parasitized by
• interacts with via parasite-host interaction label interacts with via parasite-host interaction
• interacts with via parasite-host interaction definition An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO).
• interacts with via parasite-host interaction definition source http://www.ncbi.nlm.nih.gov/pubmed/19278549
• SubObjectPropertyOf( interacts with via parasite-host interaction symbiotically interacts with )

New ObjectProperty : parasite of

• SubObjectPropertyOf( parasite of interacts with via parasite-host interaction )
• parasite of label parasite of
• parasite of example of usage Pediculus humanus capitis parasite of human
• SubObjectPropertyOf( parasite of has host )

New ObjectProperty : parasitized by

• parasitized by alternative term parasitised by
• parasitized by label parasitized by
• SubObjectPropertyOf( parasitized by interacts with via parasite-host interaction )
• SubObjectPropertyOf( parasitized by host of )

New ObjectProperty : semibiotically interacts with

• semibiotically interacts with definition A biotic interaction relationship in which one partner is an organism and the other partner is inorganic. For example, the relationship between a sponge and the substrate to which is it anchored.
• SubObjectPropertyOf( semibiotically interacts with biotically interacts with )
• semibiotically interacts with label semibiotically interacts with
• semibiotically interacts with example of usage Porifiera attaches to substrate

New ObjectProperty : symbiotically interacts with

• symbiotically interacts with definition A biotic interaction in which the two organisms live together in more or less intimate association.
• symbiotically interacts with definition source http://www.ncbi.nlm.nih.gov/pubmed/19278549
• SubObjectPropertyOf( symbiotically interacts with biotically interacts with )
• symbiotically interacts with label symbiotically interacts with
• symbiotically interacts with curator note We follow GO and PAMGO in using 'symbiosis' as the broad term encompassing mutualism through parasitism { http://purl.org/dc/elements/1.1/source=http://www.ncbi.nlm.nih.gov/pubmed/19278549 }

New ObjectProperty : commensually interacts with

• commensually interacts with label commensually interacts with
• commensually interacts with definition source http://www.ncbi.nlm.nih.gov/pubmed/19278549
• commensually interacts with definition An interaction relationship between two organisms living together in more or less intimate association in a relationship in which one benefits and the other is unaffected (GO).
• SubObjectPropertyOf( commensually interacts with symbiotically interacts with )

New ObjectProperty : mutualistically interacts with

• SubObjectPropertyOf( mutualistically interacts with symbiotically interacts with )
• mutualistically interacts with label mutualistically interacts with
• mutualistically interacts with definition An interaction relationship between two organisms living together in more or less intimate association in a relationship in which both organisms benefit from each other (GO).
• mutualistically interacts with definition source http://www.ncbi.nlm.nih.gov/pubmed/19278549

New ObjectProperty : involved in positive regulation of

• SubObjectPropertyOf( involved in positive regulation of involved in regulation of )
• involved in positive regulation of label involved in positive regulation of

New ObjectProperty : trophically interacts with

• trophically interacts with label trophically interacts with
• trophically interacts with definition An interaction relationship in which the partners are related via a feeding relationship.
• SubObjectPropertyOf( trophically interacts with biotically interacts with )

New ObjectProperty : preys on

• preys on example of usage Baleen whale preys on krill
• preys on definition An interaction relationship involving a predation process, where the subject consumes all or part of the target
• SubObjectPropertyOf( preys on trophically interacts with )
• preys on label preys on
• InverseObjectProperties( preyed upon by preys on )

New ObjectProperty : molecularly interacts with

• molecularly interacts with label molecularly interacts with
• molecularly interacts with definition An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected.
• molecularly interacts with seeAlso http://purl.obolibrary.org/obo/MI_0915
• SymmetricObjectProperty( molecularly interacts with )
• molecularly interacts with seeAlso http://purl.obolibrary.org/obo/ECO_0000353
• SubObjectPropertyOf( molecularly interacts with interacts with )
• molecularly interacts with alternative term molecularly binds with

New ObjectProperty : biotically interacts with

• biotically interacts with label biotically interacts with
• SubObjectPropertyOf( biotically interacts with interacts with )
• SubObjectPropertyOf( biotically interacts with ecologically related to )
• biotically interacts with alternative term interacts with on organism level
• biotically interacts with definition An interaction relationship in which at least one of the partners is an organism and the other is either an organism or an abiotic entity with which the organism interacts.
• SymmetricObjectProperty( biotically interacts with )

New ObjectProperty : interacts with

• interacts with seeAlso http://purl.obolibrary.org/obo/MI_0914
• ObjectPropertyDomain( interacts with material entity )
• interacts with label interacts with
• interacts with curator note Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
• SymmetricObjectProperty( interacts with )
• interacts with definition A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
• interacts with editor note This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
• ObjectPropertyRange( interacts with material entity )

New ObjectProperty : genetically interacts with

• genetically interacts with editor note An interaction that holds between two genetic entities (genes, alleles) through some genetic interaction (e.g. epistasis)
• SymmetricObjectProperty( genetically interacts with )
• genetically interacts with seeAlso http://purl.obolibrary.org/obo/MI_0208
• genetically interacts with seeAlso http://purl.obolibrary.org/obo/ECO_0000316
• genetically interacts with label genetically interacts with
• SubObjectPropertyOf( genetically interacts with interacts with )

New ObjectProperty : enables activity in

• enables activity in definition c executes activity in d if and only if c enables p and p occurs_in d
• enables activity in alternative term executes activity in
• SubObjectPropertyOf( enables activity in functionally related to )
• enables activity in label enables activity in

New ObjectProperty : contributes to morphology of

• contributes to morphology of definition p contributes to morphology of w if and only if a change in the morphology of p entails a change in the morphology of w. Examples: every skull contributes to morphology of the head which it is a part of. Counter-example: nuclei do not generally contribute to the morphology of the cell they are part of, as they are buffered by cytoplasm.
• SubObjectPropertyOf( contributes to morphology of overlaps )
• contributes to morphology of label contributes to morphology of

New ObjectProperty : involved in negative regulation of

• SubObjectPropertyOf( involved in negative regulation of involved in regulation of )
• involved in negative regulation of label involved in negative regulation of

New ObjectProperty : involved in or regulates

• involved in or regulates definition c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
• involved in or regulates label involved in or regulates
• SubObjectPropertyOf( involved in or regulates functionally related to )
• involved in or regulates alternative term involved in or involved in regulation of

New ObjectProperty : ubiquitinates

• ubiquitinates label ubiquitinates
• ubiquitinates editor note Axiomatization to GO to be added later
• ubiquitinates definition An interaction relation between x and y in which x catalyzes a reaction in which one or more ubiquitin groups are added to y
• SubObjectPropertyOf( ubiquitinates molecularly interacts with )

New ObjectProperty : is ubiquitination

• is ubiquitination label is ubiquitination
• SubObjectPropertyOf( is ubiquitination helper property )

New ObjectProperty : is kinase activity

• SubObjectPropertyOf( is kinase activity helper property )
• is kinase activity label is kinase activity

New ObjectProperty : composed primarily of

• composed primarily of temporal interpretation axiom holds for all times
• SubObjectPropertyOf( composed primarily of has part )
• composed primarily of definition x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
• composed primarily of example of usage 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
• composed primarily of label composed primarily of

New ObjectProperty : is evidence for

• is evidence for label is evidence for
• is evidence for definition A relationship between a piece of evidence and an assertion where the evidence lends support to the assertion

New ObjectProperty : is eaten by

• SubObjectPropertyOf( is eaten by trophically interacts with )
• is eaten by label is eaten by

New ObjectProperty : eats

• SubObjectPropertyOf( eats trophically interacts with )
• eats label eats

New ObjectProperty : has part that occurs in

• has part that occurs in label has part that occurs in

New ObjectProperty : child nucleus of in male

• child nucleus of in male definition A child nucleus relationship in which the cells are part of a hermaphroditic organism
• child nucleus of in male label child nucleus of in male
• SubObjectPropertyOf( child nucleus of in male child nucleus of )

New ObjectProperty : child nucleus of in hermaphrodite

• child nucleus of in hermaphrodite definition A child nucleus relationship in which the cells are part of a hermaphroditic organism
• SubObjectPropertyOf( child nucleus of in hermaphrodite child nucleus of )
• child nucleus of in hermaphrodite label child nucleus of in hermaphrodite

New ObjectProperty : child nucleus of

• child nucleus of curator note This relation is primarily used in the worm anatomy ontology for representing lineage at the level of nuclei. However, it is applicable to any organismal cell lineage.
• child nucleus of definition c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d
• ObjectPropertyRange( child nucleus of nucleus )
• child nucleus of example of usage ABal nucleus child nucleus of ABA nucleus (in C elegans)
• ObjectPropertyDomain( child nucleus of nucleus )
• SubObjectPropertyOf( child nucleus of developmentally preceded by )
• child nucleus of label child nucleus of

New ObjectProperty : has role

• has role alternative term has_role
• InverseObjectProperties( has role role of )
• has role label has role
• ObjectPropertyDomain( has role independent continuant )
• SubObjectPropertyOf( has role bearer of )
• ObjectPropertyRange( has role role )

New ObjectProperty : in homocracy relationship with

• SymmetricObjectProperty( in homocracy relationship with )
• in homocracy relationship with http://purl.org/dc/elements/1.1/source http://www.ncbi.nlm.nih.gov/pubmed/20116127
• in homocracy relationship with http://purl.org/dc/elements/1.1/creator http://bgee.unil.ch
• SubObjectPropertyOf( in homocracy relationship with in similarity relationship with )
• SubObjectPropertyOf( in homocracy relationship with evolutionarily related to )
• in homocracy relationship with seeAlso http://purl.obolibrary.org/obo/HOM_0000003
• in homocracy relationship with definition Similarity that is characterized by the organization of anatomical structures through the expression of homologous or identical patterning genes. { database cross reference=http://dx.doi.org/10.1007/BF02814484 , database cross reference=http://dx.doi.org/10.1007/s00427-003-0301-4 , database cross reference=http://dx.doi.org/10.1186/1742-9994-2-15 , database cross reference=http://purl.obolibrary.org/obo/HOM_0000003 }
• in homocracy relationship with label in homocracy relationship with
• in homocracy relationship with database cross reference ECO:0000075
• in homocracy relationship with has exact synonym homocracous to
• in homocracy relationship with comment Homology and homocracy are not mutually exclusive. The homology relationships of patterning genes may be unresolved and thus may include orthologues and paralogues.

New ObjectProperty : in homology relationship with

• SubObjectPropertyOf( in homology relationship with shares ancestor with )
• in homology relationship with http://purl.org/dc/elements/1.1/source http://www.ncbi.nlm.nih.gov/pubmed/20116127
• DisjointObjectProperties( in homology relationship with in homoplasy relationship with )
• SymmetricObjectProperty( in homology relationship with )
• in homology relationship with definition Similarity that results from common evolutionary origin. { database cross reference=http://dx.doi.org/10.1002/bies.950180611 , database cross reference=http://dx.doi.org/10.1002/jmor.1051730307 , database cross reference=http://dx.doi.org/10.1007/BF02814480 , database cross reference=http://purl.obolibrary.org/obo/HOM_0000001 }
• in homology relationship with has exact synonym homologous to
• in homology relationship with label in homology relationship with
• SubObjectPropertyOf( in homology relationship with in similarity relationship with )
• in homology relationship with seeAlso http://purl.obolibrary.org/obo/HOM_0000001
• in homology relationship with comment This broad definition encompasses all the working definitions proposed so far in the literature.
• in homology relationship with http://purl.org/dc/elements/1.1/creator http://bgee.unil.ch

New ObjectProperty : differs in

• differs in label differs in
• differs in comment This is an exploratory relation
• differs in seeAlso https://code.google.com/p/phenotype-ontologies/w/edit/PhenotypeModelCompetencyQuestions

New ObjectProperty : involved in regulation of

• SubObjectPropertyOf( involved in regulation of involved in or regulates )
• involved in regulation of label involved in regulation of
• involved in regulation of definition c involved in regulation of p if c is involved in some 'p' and p' regulates some p

New ObjectProperty : causally downstream of or within

• InverseObjectProperties( causally downstream of or within causally upstream of or within )
• SubObjectPropertyOf( causally downstream of or within causally related to )
• causally downstream of or within label causally downstream of or within

New ObjectProperty : differs in attribute

• ObjectPropertyRange( differs in attribute dependent continuant )
• SubObjectPropertyOf( differs in attribute differs in )
• differs in attribute label differs in attribute

New ObjectProperty : differs in attribute of

• ObjectPropertyRange( differs in attribute of independent continuant or process )
• differs in attribute of label differs in attribute of
• SubObjectPropertyOf( differs in attribute of differs in )

New ObjectProperty : causally upstream of or within

• InverseObjectProperties( causally downstream of or within causally upstream of or within )
• SubObjectPropertyOf( causally upstream of or within causally related to )
• causally upstream of or within label causally upstream of or within

New ObjectProperty : has boundary

• has boundary definition The relationship between a material entity and the boundary (2D immaterial entity) that delimits it.
• SubObjectPropertyOf( has boundary mereotopologically related to )
• InverseObjectProperties( has boundary boundary of )
• ObjectPropertyDomain( has boundary material entity )
• has boundary label has boundary
• has boundary temporal interpretation axiom holds for all times
• ObjectPropertyRange( has boundary immaterial entity )

New ObjectProperty : boundary of

• boundary of label boundary of
• InverseObjectProperties( has boundary boundary of )
• SubObjectPropertyOf( boundary of mereotopologically related to )
• boundary of temporal interpretation axiom holds for all times
• boundary of definition The relationships between a boundary (a 2D immaterial entity) and the material entity that it delimits.

New ObjectProperty : coincident with

• ObjectPropertyDomain( coincident with continuant and bearer of some linear )
• SubObjectPropertyOf( coincident with mereotopologically related to )
• coincident with label coincident with
• coincident with definition A relation that holds between two linear structures that are approximately parallel to each other for their entire length. This relation is transitive. It i is agnostic about any parthood relationship between X and Y.
• coincident with comment Example: if we define region of chromosome as any subdivision of a chromosome along its long axis, then we can define a region of chromosome that contains only gene x as 'chromosome region' that coincident_with some 'gene x', where the term gene X corresponds to a genomic sequence.
• TransitiveObjectProperty( coincident with )
• ObjectPropertyRange( coincident with continuant and bearer of some linear )

Changed ObjectProperty objects: 22

Changes for: enables

• Deleted
  • - enables example of usage akt-2 enables protein kinase activity
• Added
  • + enables alternative term executes
  • + enables example of usage a particular instances of akt-2 enables some instance of protein kinase activity

Changes for: has developmental contribution from

• Added
  • + ObjectPropertyDomain( has developmental contribution from anatomical structure )
  • + ObjectPropertyRange( has developmental contribution from anatomical structure )

Changes for: developmentally induced by

• Added
  • + ObjectPropertyDomain( developmentally induced by anatomical structure )
  • + ObjectPropertyRange( developmentally induced by anatomical structure )

Changes for: inheres in part of

• Added
  • + inheres in part of definition q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.

Changes for: has end location

• Added
  • + ObjectPropertyDomain( has end location process )
  • + ObjectPropertyRange( has end location independent continuant )
  • + SubObjectPropertyOf( has end location has part that occurs in )
  • + has end location alternative term ends with process that occurs in

Changes for: has start location

• Added
  • + ObjectPropertyDomain( has start location process )
  • + ObjectPropertyRange( has start location independent continuant )
  • + SubObjectPropertyOf( has start location has part that occurs in )
  • + has start location alternative term starts with process that occurs in

Changes for: involved in

• Deleted
  • - SubObjectPropertyOf( involved in functionally related to )
• Added
  • + SubObjectPropertyOf( involved in involved in or regulates )
  • + involved in alternative term actively involved in
  • + involved in alternative term enables part of
  • + involved in definition c involved_in p if and only if c enables some process p', and p' is part of p

Changes for: enabled_by

• Added
  • + enabled by definition inverse of enables

Changes for: regulated by

• Deleted
  • - SubObjectPropertyOf( regulated by causally related to )
• Added
  • + ObjectPropertyDomain( regulated by process )
  • + ObjectPropertyRange( regulated by process )
  • + SubObjectPropertyOf( regulated by causally downstream of or within )
  • + regulated by OBO foundry unique label regulated by (biological process to biological process)

Changes for: develops in

• Added
  • + ObjectPropertyDomain( develops in anatomical structure )

Changes for: has prototype

• Deleted
  • - ObjectPropertyDomain( has prototype continuant )
  • - ObjectPropertyRange( has prototype continuant )

Changes for: regulates

• Deleted
  • - SubObjectPropertyOf( regulates causally related to )
• Added
  • + SubObjectPropertyOf( regulates causally upstream of or within )

Changes for: results in developmental progression of

• Deleted
  • - ObjectPropertyDomain( results in developmental progression of process )
• Added
  • + ObjectPropertyDomain( results in developmental progression of biological process )

Changes for: attached to part of

• Added
  • + attached to part of definition a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b.

Changes for: causally upstream of

• Deleted
  • - SubObjectPropertyOf( causally upstream of causally related to )
• Added
  • + SubObjectPropertyOf( causally upstream of causally upstream of or within )

Changes for: bounding layer of

• Deleted
  • - ObjectPropertyDomain( bounding layer of continuant and bearer of some http://purl.obolibrary.org/obo/PATO_0002124 )
• Added
  • + ObjectPropertyDomain( bounding layer of material entity and bearer of some laminar )
  • + ObjectPropertyRange( bounding layer of material entity )

Changes for: causally downstream of

• Deleted
  • - SubObjectPropertyOf( causally downstream of causally related to )
• Added
  • + SubObjectPropertyOf( causally downstream of causally downstream of or within )

Changes for: has indirect output

• Deleted
  • - http://purl.obolibrary.org/obo/RO_0002403 OBO foundry unique label has indirect output
• Added
  • + has indirect output label has indirect output

Changes for: has direct output

• Deleted
  • - http://purl.obolibrary.org/obo/RO_0002402 OBO foundry unique label has direct output
• Added
  • + has direct output label has direct output

Changes for: has indirect input

• Deleted
  • - http://purl.obolibrary.org/obo/RO_0002401 OBO foundry unique label has indirect input
• Added
  • + has indirect input label has indirect input

Changes for: has direct input

• Deleted
  • - http://purl.obolibrary.org/obo/RO_0002400 OBO foundry unique label has direct input
• Added
  • + has direct input label has direct input

Changes for: shares ancestor with

• Added
  • + shares ancestor with curator note Consider obsoleting and merging with child relation, 'in homology relationship with'