{  
"About": {
    "Title": "Variant amino acids in alpha",
    "Description": "Variant amino acids in the alpha strain of SarsCov2 derived from  <a href='https://outbreak.info/compare-lineages?pango=Alpha&gene=ORF1a&gene=ORF1b&gene=S&gene=N&gene=ORF3a&gene=E&gene=M&gene=ORF6&gene=ORF7a&gene=ORF7b&gene=ORF8&gene=ORF10&threshold=70&dark=true'>outbreak.info</a> 20210921."
  },
  "S_alpha": {
    "Description": "Variant amino acids of the spike protein in the alpha strain",
    "Sequence_hash": "4c35f09aac2f7be4f3cffd30c6aecac8", 
    "Features": [
	{
		"Name": "H69_V70del",
		"Residues": "69-70",
		"Description": "Occurrence in alpha = 97%"
	},
	{
		"Name": "Y144_Y145del",
		"Residues": "144-145",
		"Description": "Occurrence in alpha = 95%"
	},
	{
		"Name": "N501Y",
		"Residue": 501,
		"Description": "Occurrence in alpha = 98%"
	},
	{
		"Name": "A570D",
		"Residue": 570,
		"Description": "Occurrence in alpha = 99%"
	},
	{
		"Name": "D614G",
		"Residue": 614,
		"Description": "Occurrence in alpha = 99%"
	},
	{
		"Name": "P681H",
		"Residue": 681,
		"Description": "Occurrence in alpha = 99%"
	},
	{
		"Name": "T716I",
		"Residue": 716,
		"Description": "Occurrence in alpha = 99%"
	},
	{
		"Name": "S982A",
		"Residue": 982,
		"Description": "Occurrence in alpha = 99%"
	},
	{
		"Name": "D1118H",
		"Residue": 1118,
		"Description": "Occurrence in alpha = 99%"
	}
    ]
  },
  "PP1a_alpha": {
    "Description": "Variant amino acids of polyprotein 1a in the alpha strain",
    "Sequence_hash": "e781b58591b8dbdd15f84dcbdec82105",
    "Features": [
	{
		"Name": "T1001I",
		"Residue": 1001,
		"Description": "Occurrence in alpha = 100%"
	},
	{
		"Name": "A1708D",
		"Residue": 1708,
		"Description": "Occurrence in alpha = 99%"
	},
	{
		"Name": "I2230T",
		"Residue": 2230,
		"Description": "Occurrence in alpha = 98%"
	},
	{
		"Name": "S3675K",
		"Residue": 3675,
		"Description": "Occurrence in alpha = 97%"
	},
	{
		"Name": "S3675_F3677del",
		"Residues": "3675-3677",
		"Description": "Occurrence in alpha = 97%"
	}
	]
  },
  "PP1ab_alpha": {
    "Description": "ariant amino acids of polyprotein 1ab in the alpha strain",
    "Sequence_hash": "e6608b50fcd6e004708a875615ddf2d9",
    "Features": [
	{
		"Name": "T1001I",
		"Residue": 1001,
		"Description": "Occurrence in alpha = 100%"
	},
	{
		"Name": "A1708D",
		"Residue": 1708,
		"Description": "Occurrence in alpha = 99%"
	},
	{
		"Name": "I2230T",
		"Residue": 2230,
		"Description": "Occurrence in alpha = 98%"
	},
	{
		"Name": "S3675K",
		"Residue": 3675,
		"Description": "Occurrence in alpha = 97%"
	},
	{
		"Name": "S3675_F3677del",
		"Residues": "3675-3677",
		"Description": "Occurrence in alpha = 97%"
	},		
	{
		"Name": "P4715L",
		"Residue": 4715,
		"Description": "Occurrence in delta = 99%"
	}
	]
  },
  "ORF8_alpha": {
    "Description": "Variant amino acids of the ORF8 protein in the alpha strain",
    "Sequence_hash": "3a77ad9207d29beacfbf6f18b0da9e26",
    "Features": [
    {
		"Name": "Q27Ter",
		"Residues": "27-121",
		"Description": "Occurrence in alpha = 99%"
	},
	{
		"Name": "R52I",
		"Residue": 52,
		"Description": "Occurrence in alpha = 99%"
	},
	{
		"Name": "Y73C",
		"Residue": 73,
		"Description": "Occurrence in alpha = 99%"
	}
	]
  },
  "N_alpha": {
    "Description": "Variant amino acids of the nucleocapsid protein in the alpha strain",
    "Sequence_hash": "b100d0849c3e01fc6c75ead0e916ce0f",
    "Features": [
	{
		"Name": "R203K",
		"Residue": 203,
		"Description": "Occurrence in alpha = 98%"
	},
	{
		"Name": "G204R",
		"Residue": 204,
		"Description": "Occurrence in alpha = 91%"
	},
	{
		"Name": "S235F",
		"Residue": 235,
		"Description": "Occurrence in alpha = 99%"
	}

	]
  }
}