FastQCFastQC Report
Mon 5 Oct 2015
MG.R2.trimmed.hg38.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameMG.R2.trimmed.hg38.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10858737
Sequences flagged as poor quality0
Sequence length40-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGATC4101.8189894E-1216.70524494-95
TAGATCG13900.016.52143794-95
TTAGATC11501.4733814E-108.05782494-95
AGATCGG54650.07.003597794-95
Produced by FastQC (version 0.11.3)