FastQCFastQC Report
Mon 5 Oct 2015
MG.R2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameMG.R2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15683038
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA211250.06.38483594-95
AGATCGG237850.05.81374794-95
TAGATCG65950.05.74025494-95
GTCGTGT60350.05.44653394-95
AGAGCGT138550.05.432015494-95
AAGAGCG172400.05.430529694-95
TCGTGTA58750.05.286182494-95
ATCGGAA248750.05.24003594-95
TCGGAAG205350.05.1883994-95
Produced by FastQC (version 0.11.3)