FastQCFastQC Report
Mon 5 Oct 2015
MG.R1.trimmed.hg38.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameMG.R1.trimmed.hg38.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10858737
Sequences flagged as poor quality0
Sequence length40-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGATC4200.017.64787994-95
TAGATCG16900.015.66379894-95
TTAGATC10550.010.70582294-95
TCTAGAT5000.0080526636.746955492-93
ACTAGAT5050.0088641326.68015492-93
AGATCGG57800.06.28972894-95
Produced by FastQC (version 0.11.3)