MG.R1.fq FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	MG.R1.fq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15683038
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGTGC	720	0.0	9.56551	92-93
CGCTAGT	715	0.0	8.968384	90-91
ACGCTAG	845	0.0	8.712874	90-91
CTAGATC	1705	0.0	7.9387393	94-95
GCTAGTG	845	0.0	7.869442	92-93
GATCGGA	22285	0.0	6.4894176	94-95
CACACGT	6300	0.0	6.407807	94-95
ACACGTC	6525	0.0	6.3324213	94-95
TAGATCG	6555	0.0	6.2672133	94-95
AGAGCAC	12770	0.0	6.2667165	94-95
CACGTGT	2330	4.5474735E-11	6.114297	6
CACGTCT	6110	0.0	6.0629563	94-95
AGATCGG	24955	0.0	6.061539	94-95
TCACGTG	2590	7.057679E-10	5.5005064	5
GAGCACA	12210	0.0	5.4844675	94-95
TCGGAAG	21610	0.0	5.4613833	94-95
AGCACAC	10795	0.0	5.38945	94-95
ATCGGAA	26765	0.0	5.296734	94-95
GCACACG	10085	0.0	5.274401	94-95