Circle detection

Detects circles within grayscale images using the Hough transform.

Convex hull 2D

Fit 2D convex hull to a 2D object.

Extract object cross section

Extract object edges

Fit active contours

Uses active contours to fit a 2D concave hull to specified objects.

Get local object region

Creates a local object region (sphere or circle) for each object in a specified object collection.

Get object surface

Create surface objects for each input object.

Identify objects

Creates objects from an input binary image.

Manually identify objects

Manually create objects using the ImageJ selection tools.

Project objects

Create projections of objects along the z-axis into an xy-plane representation.

Ridge detection

Detects ridge objects in an image from the workspace.

Run TrackMate

Uses the TrackMate plugin included with Fiji to detect and track spots in images.

Sphere detection

Detects spheres within grayscale images using the Hough transform.

Spot detection

Detects spot-like features in 2D and 3D using TrackMate's LogDetector.