1KFG/NCBI_fungi-v0.1.zip
1KFG-NCBI_fungi-8076c55
.gitignore
40 Bytes
README.md
306 Bytes
assembly_stats.csv
701.2 kB
lib
ncbi_accessions.csv
254.3 kB
ncbi_accessions_taxonomy.csv
477.9 kB
logs
.hodor
0 Bytes
pipeline
00_init_parse.sh
267 Bytes
01_download.sh
1.4 kB
02_parse_and_plot.sh
511 Bytes
03_make_gffdb.sh
726 Bytes
04_make_genomefa.sh
273 Bytes
04a_make_genomefa.sh
278 Bytes
04b_make_saccharomycota_genome.sh
318 Bytes
scripts
assembly_json_process.py
3.4 kB
create_genome_files.py
2.8 kB
genome_feature_stats.R
8.1 kB
get_ncbi_datasets.sh
464 Bytes
make_gff_db.py
2.2 kB
make_taxonomy_table.pl
2.4 kB
parse_genome_stats.py
7.9 kB
summary_plot_genomeStats.R
8.4 kB
util
rename_folders_to_full_accession.sh
435 Bytes