pachterlab/CWGFLHGCCHAP_2021-v2.0.0.zip
pachterlab-CWGFLHGCCHAP_2021-691ab73
.gitignore
11 Bytes
LICENSE
1.3 kB
README.md
7.3 kB
browser.png
501.3 kB
data
Table S3. Designed and Predicted Sequences.xlsx
24.6 kB
Table S5. All marker and differentially expressed (DE) genes.xlsx
1.7 MB
cellCountsTypes.xlsx
36.6 kB
qPCR- Quantification Ct Results.xlsx
47.2 kB
env
mkdocsSite.yml
2.0 kB
pkg_vers_20210111.txt
37.6 kB
html_site
README.md
13 Bytes
docs
.Rhistory
0 Bytes
index.md
7.2 kB
notebooks
MARIMBAAtlasSearchAndPlot.ipynb
8.4 MB
allDistanceCalculations.ipynb
2.9 MB
cellAtlasSearchAndPlot.ipynb
13.9 MB
cellRangerClickTagCounts.ipynb
259.4 kB
cellRangerClustering_Starvation.ipynb
669.9 kB
deSeq2Analysis_StarvationResponse.ipynb
1.2 MB
deSeq2Analysis_StimulationResponse.ipynb
2.2 MB
filterStarvCells_ClickTags.ipynb
27.0 MB
fullTrajAnalysis.ipynb
6.2 MB
kallistoBusRuns_StarvAndStim.ipynb
67.9 kB
kallistobusStarvClickTags.ipynb
15.4 MB
kallistobusStimClickTags.ipynb
12.7 MB
neuronSubpop_Analysis.ipynb
1.2 MB
starvation_Analysis.ipynb
13.9 MB
stimulation_Analysis.ipynb
14.8 MB
requirements.txt
31 Bytes
mkdocs.yml
2.2 kB
site
404.html
15.8 kB
assets
images
favicon.png
1.9 kB
javascripts
bundle.76f349be.min.js
80.9 kB
bundle.76f349be.min.js.map
386.0 kB
lunr
min
lunr.ar.min.js
17.1 kB
lunr.da.min.js
4.7 kB
lunr.de.min.js
6.1 kB
lunr.du.min.js
6.2 kB
lunr.es.min.js
11.5 kB
lunr.fi.min.js
9.3 kB
lunr.fr.min.js
10.7 kB
lunr.hu.min.js
9.4 kB
lunr.it.min.js
11.2 kB
lunr.ja.min.js
2.3 kB
lunr.jp.min.js
36 Bytes
lunr.multi.min.js
817 Bytes
lunr.nl.min.js
6.0 kB
lunr.no.min.js
4.8 kB
lunr.pt.min.js
10.2 kB
lunr.ro.min.js
11.0 kB
lunr.ru.min.js
10.3 kB
lunr.stemmer.support.min.js
3.6 kB
lunr.sv.min.js
4.5 kB
lunr.tr.min.js
15.0 kB
lunr.vi.min.js
784 Bytes
tinyseg.js
22.9 kB
workers
search.b0710199.min.js
35.0 kB
search.b0710199.min.js.map
167.5 kB
stylesheets
main.ca7ac06f.min.css
89.1 kB
main.ca7ac06f.min.css.map
324.5 kB
palette.f1a3b89f.min.css
10.9 kB
palette.f1a3b89f.min.css.map
37.5 kB
index.html
42.3 kB
notebooks
MARIMBAAtlasSearchAndPlot
index.html
8.5 MB
allDistanceCalculations
index.html
3.0 MB
cellAtlasSearchAndPlot
index.html
13.9 MB
cellRangerClickTagCounts
index.html
278.5 kB
cellRangerClustering_Starvation
index.html
730.9 kB
deSeq2Analysis_StarvationResponse
index.html
1.2 MB
deSeq2Analysis_StimulationResponse
index.html
2.3 MB
filterStarvCells_ClickTags
index.html
27.0 MB
fullTrajAnalysis
index.html
6.3 MB
kallistoBusRuns_StarvAndStim
index.html
155.7 kB
kallistobusStarvClickTags
index.html
15.3 MB
kallistobusStimClickTags
index.html
12.8 MB
neuronSubpop_Analysis
index.html
1.3 MB
starvation_Analysis
index.html
14.0 MB
stimulation_Analysis
index.html
14.9 MB
requirements.txt
31 Bytes
sitemap.xml
3.2 kB
sitemap.xml.gz
424 Bytes
notebooks
CellAtlasAnalysis
cellRangerClustering_Starvation.ipynb
669.9 kB
deSeq2Analysis_StarvationResponse.ipynb
1.2 MB
fullTrajAnalysis.ipynb
6.2 MB
gastroGeneModuleAnalysis.ipynb
418.4 kB
neuronSubpop_Analysis.ipynb
1.2 MB
pseudoBulkStarvation.ipynb
802.7 kB
starvation_Analysis.ipynb
13.9 MB
ComparativeDistanceAnalysis
allDistanceCalculations.ipynb
2.9 MB
Extras
scrubletAnalysis.ipynb
383.0 kB
validationForL1Analysis.ipynb
1.1 MB
L1Validation
l1ValidationwithMultiplexPerturbations.ipynb
5.1 MB
l1ValidationwithPopAlignTutorial.ipynb
590.8 kB
Preprocessing
ClickTagDemultiplexing
cellRangerClickTagCounts.ipynb
259.4 kB
kallistobusStarvClickTags.ipynb
15.4 MB
kallistobusStimClickTags.ipynb
12.7 MB
cDNAFiltering
filterStarvCells_ClickTags.ipynb
27.0 MB
kallistoBusRuns_StarvAndStim.ipynb
67.9 kB
SearchAndPlotInteractive
MARIMBAAnnosAnalysis.ipynb
3.7 MB
MARIMBAAtlasSearchAndPlot.ipynb
8.4 MB
cellAtlasSearchAndPlot.ipynb
13.9 MB
StimulationAnalysis
deSeq2Analysis_StimulationResponse.ipynb
2.2 MB
stimulation_Analysis.ipynb
14.8 MB
scripts
cellCount.R
653 Bytes
clytiaSplitsTree.R
1.2 kB
qpcr_logFC_boxplot_script.R
1.8 kB