Filter objects

Modules which can remove objects from an object collection (or move them to a new collection) based on various metrics.

Merge objects

Modules used for combining either different objects into one or combining objects from different collections into a single collection.

Combine object sets

Combines the objects from two collections stored in the workspace.

Expand and shrink objects

Expands or shrinks all objects in a specified object collection from the workspace.

Fill holes in objects

Fills holes in all objects in a collection.

Mask objects

Applies the mask image to the specified object collection.

Reassign enclosed objects

Any objects entirely enclosed by another object in the same collection are reassigned as being part of the enclosing object.

Remove objects

Removes the specified object set(s) from the workspace.

Track editor

Display TrackMate's TrackScheme track editor to allow tracks to be re-linked between detected objects.