Preview

mrvollger-assembly_workflows-a1c33d8
- README.md
  
  1.2 kB
- bin
  - DupMaskerParallel
    
    39.1 kB
  - gffread-0.12.3.Linux_x86_64
    - README.md
      
      916 Bytes
    - gffread
      
      2.5 MB
- env.cfg
  
  1.0 kB
- examples
  - README.md
    
    365 Bytes
  - lift.yaml
    
    1.2 kB
- scripts
  - AddUniqueGeneIDs.py
    
    1.9 kB
  - AddUniqueGeneIDs_2.py
    
    1.5 kB
  - BamBedUtils.py
    
    7.3 kB
  - DupMask_parserV6
    - bd35ChrSize
      
      765 Bytes
    - cytoBandColor
      
      37.2 kB
    - org
      - 20190812_DupMask_parserV6.pl
        
        15.6 kB
    - r.all.repeat.10K.nr.Color
      
      193.0 kB
  - DupMask_parserV6.pl
    
    15.8 kB
  - GAF_parsing.py
    
    3.9 kB
  - MoveGeneModels.mk
    
    1.2 kB
  - add_regions_to_sedef.py
    
    2.5 kB
  - dedup_sedef_bed.py
    
    2.0 kB
  - enriched.py
    
    2.1 kB
  - interactive_divergence.ipynb
    
    16.1 MB
  - lift_in_cigar.py
    
    1.2 kB
  - liftoff_summary.py
    
    1.8 kB
  - make_csv_from_gfa.sh
    
    152 Bytes
  - minimiro.py
    
    25.7 kB
  - read_genes.py
    
    985 Bytes
  - sedef_summary.py
    
    11.0 kB
  - sedef_to_bed.py
    
    6.5 kB
- templates
  - bigGenePred.as
    
    1.3 kB
  - dupmasker.html
    
    987 Bytes
  - liftoff.html
    
    892 Bytes
  - sedef.as
    
    1.8 kB
  - sedef.html
    
    1.1 kB
  - snpEff.config.template
    
    16.4 kB
- test_data
  - CHM13.pri.NOTCH2NL.fasta.gz
    
    2.6 MB
  - Clint_PTR.pri.NOTCH2NL.fasta.gz
    
    800.8 kB
  - minimal_minimiro.sh
    
    488 Bytes
- workflows
  - align.smk
    
    6.1 kB
  - dipcall.smk
    
    7.9 kB
  - hifiasm_trio.smk
    
    5.2 kB
  - liftoff.smk
    
    7.8 kB
  - mask.smk
    
    11.8 kB
  - minimiro.smk
    
    10.4 kB
  - pull_regions.smk
    
    16.9 kB
  - run.smk
    
    635 Bytes
  - sedef.smk
    
    6.2 kB

mrvollger/assembly_workflows-v0.2-Zenodo.zip