grunwaldlab/poppr-v.2.9.3.zip
grunwaldlab-poppr-4013eba
.Rbuildignore
416 Bytes
.github
.gitignore
7 Bytes
FUNDING.yml
874 Bytes
workflows
R-CMD-check.yaml
2.9 kB
pkgdown.yaml
1.3 kB
.gitignore
359 Bytes
.travis.yml
778 Bytes
CODE_OF_CONDUCT.md
1.4 kB
CONTRIBUTING.md
5.6 kB
CRAN-RELEASE
127 Bytes
DESCRIPTION
2.6 kB
ISSUE_TEMPLATE.md
556 Bytes
Makefile
1.5 kB
NAMESPACE
4.7 kB
NEWS.md
45.4 kB
R
.gitignore
11 Bytes
Index_calculations.r
49.5 kB
aaaMLGclass.R
5.7 kB
aaaMLGmethods.R
19.3 kB
amova.r
20.7 kB
bitwise.r
26.2 kB
bootstraping.R
29.9 kB
bruvo.r
38.8 kB
check_data.R
4.1 kB
classes.r
9.3 kB
data_subset.r
32.6 kB
distances.r
14.3 kB
file_handling.r
29.2 kB
filter_stats.R
13.0 kB
global_memory.r
3.6 kB
ia_jackknife.R
9.2 kB
imsn.R
7.2 kB
internal.r
103.6 kB
internal_methods.R
14.1 kB
messages.r
12.4 kB
methods.r
68.1 kB
mlg.r
20.3 kB
msn_handlers.R
10.3 kB
pipe.R
113 Bytes
poppr.R
23.9 kB
print_methods.r
5.6 kB
round_robin.R
33.3 kB
sample_schemes.r
11.7 kB
upgma.R
615 Bytes
visualizations.r
59.3 kB
zzz.r
4.2 kB
README.md
7.3 kB
_pkgdown.yml
573 Bytes
appveyor.yml
860 Bytes
cran-comments.md
474 Bytes
data
Aeut.rda
1.8 kB
Pinf.rda
2.9 kB
Pram.rda
14.0 kB
monpop.rda
8.1 kB
old_Pinf.rda
3.1 kB
old_partial_clone.rda
1.3 kB
partial_clone.rda
1.1 kB
inst
CITATION
2.1 kB
files
rootrot.csv
24.6 kB
rootrot2.csv
22.3 kB
simulated.dat
3.8 kB
shiny
msn_explorer
server.R
21.6 kB
ui.R
8.0 kB
utils.R
2.9 kB
man
Aeut.Rd
880 Bytes
MLG-accessors.Rd
2.5 kB
MLG-class.Rd
1.9 kB
MLG-method.Rd
1.9 kB
Pinf.Rd
996 Bytes
Pram.Rd
2.1 kB
aboot.Rd
7.6 kB
bitwise.dist.Rd
4.8 kB
bitwise.ia.Rd
2.0 kB
boot.ia.Rd
1.7 kB
bootgen-class.Rd
812 Bytes
bootgen-methods.Rd
1.2 kB
bruvo.boot.Rd
4.3 kB
bruvo.dist.Rd
9.3 kB
bruvo.msn.Rd
9.6 kB
bruvomat-class.Rd
649 Bytes
bruvomat-methods.Rd
977 Bytes
clonecorrect.Rd
2.9 kB
coercion-methods.Rd
2.0 kB
cutoff_predictor.Rd
2.0 kB
diss.dist.Rd
2.1 kB
diversity_boot.Rd
4.0 kB
diversity_ci.Rd
7.6 kB
diversity_stats.Rd
2.2 kB
figures
logo.png
27.0 kB
small_logo.png
14.6 kB
filter_stats.Rd
3.4 kB
fix_replen.Rd
3.8 kB
genclone-class.Rd
2.8 kB
genclone-method.Rd
1.8 kB
genetic_distance.Rd
4.2 kB
genind2genalex.Rd
3.0 kB
genotype_curve.Rd
3.7 kB
getfile.Rd
1.5 kB
grapes-greater-than-grapes.Rd
217 Bytes
greycurve.Rd
2.0 kB
ia.Rd
11.6 kB
imsn.Rd
4.0 kB
incomp.Rd
883 Bytes
info_table.Rd
3.9 kB
informloci.Rd
2.7 kB
is.clone.Rd
841 Bytes
levels-methods.Rd
634 Bytes
locus_table.Rd
3.5 kB
make_haplotypes-method.Rd
2.4 kB
missingno.Rd
3.2 kB
mlg.Rd
7.9 kB
mlg.filter.Rd
8.0 kB
mll-method.Rd
1.7 kB
mll.custom.Rd
1.5 kB
mll.reset-method.Rd
1.9 kB
monpop.Rd
1.4 kB
old2new_genclone.Rd
483 Bytes
partial_clone.Rd
817 Bytes
pgen.Rd
4.7 kB
plot_filter_stats.Rd
1.4 kB
plot_poppr_msn.Rd
11.7 kB
poppr-package.Rd
14.9 kB
poppr.Rd
12.1 kB
poppr.all.Rd
833 Bytes
poppr.amova.Rd
12.3 kB
poppr.msn.Rd
8.4 kB
poppr.plot.Rd
1.3 kB
poppr_has_parallel.Rd
438 Bytes
popsub.Rd
1.8 kB
private_alleles.Rd
2.8 kB
psex.Rd
9.3 kB
rare_allele_correction.Rd
4.3 kB
read.genalex.Rd
4.3 kB
recode_polyploids.Rd
4.2 kB
rraf.Rd
4.6 kB
rrmlg.Rd
1.4 kB
samp.ia.Rd
3.1 kB
shufflepop.Rd
2.6 kB
snpclone-coercion-methods.Rd
1.4 kB
snpclone-method.Rd
1.3 kB
test_replen.Rd
1.7 kB
unique-methods.Rd
804 Bytes
upgma.Rd
567 Bytes
win.ia.Rd
3.9 kB
pkgdown
favicon
apple-touch-icon-120x120.png
11.7 kB
apple-touch-icon-152x152.png
15.7 kB
apple-touch-icon-180x180.png
19.6 kB
apple-touch-icon-60x60.png
4.9 kB
apple-touch-icon-76x76.png
6.5 kB
apple-touch-icon.png
19.6 kB
favicon-16x16.png
1.2 kB
favicon-32x32.png
2.3 kB
favicon.ico
15.1 kB
poppr.Rproj
618 Bytes
src
.gitignore
12 Bytes
Makevars
70 Bytes
adjust_missing.c
2.9 kB
bitwise_distance.c
87.8 kB
init.c
2.6 kB
mlg_clustering.c
23.6 kB
mlg_counter.c
13.4 kB
msn.c
5.9 kB
omp_test.c
350 Bytes
permut_shuffler.c
4.9 kB
poppr_distance.c
39.0 kB
tests
test-all.R
65 Bytes
testthat
genalex
test.txt
181 Bytes
test-MLG-class.R
1.9 kB
test-amova.R
16.9 kB
test-bitwise.R
6.8 kB
test-bootclass.R
1.8 kB
test-colors.R
494 Bytes
test-distpop.R
1.5 kB
test-errors.R
1.1 kB
test-filter.R
9.0 kB
test-genclone.R
3.9 kB
test-genotype_curve.R
1.6 kB
test-greyscale.R
353 Bytes
test-import.R
17.3 kB
test-incomp.R
396 Bytes
test-informloci.R
1.3 kB
test-jackia.R
1.2 kB
test-locustable.R
2.5 kB
test-make_haplotypes.R
1.0 kB
test-missing.R
846 Bytes
test-mlg.R
26.6 kB
test-msn.R
17.7 kB
test-plots.R
9.5 kB
test-polyploids.R
1.9 kB
test-poppr.R
7.0 kB
test-popsub.R
4.3 kB
test-private.R
1.2 kB
test-replen.R
2.5 kB
test-round-robin.R
9.7 kB
test-sampling.R
2.1 kB
test-snpclone.R
2.4 kB
test-trees.R
3.6 kB
test-values.R
19.6 kB
test-winia.R
1.8 kB
tools
convertversion.sh
923 Bytes
getversion.sh
79 Bytes
vignettes
.gitignore
1.3 kB
algo-concordance.tex
89 Bytes
algo.Rnw
25.0 kB
algo.pdf
383.5 kB
algo.tex
28.1 kB
authordate1.bst
31.0 kB
bruvo_upgma.png
6.8 kB
getfile.pdf
78.7 kB
getfile.png
72.5 kB
jalapeno-poppers.pdf
54.7 kB
jalapeno_logo.png
81.2 kB
jalapeno_logo.svg
1.4 MB
mlg.Rmd
27.9 kB
mod_dat.png
62.9 kB
msg.txt
452 Bytes
nancybruvo.rda
4.8 kB
pnas.bst
21.0 kB
poppr.css
291 Bytes
poppr_manual.Rmd
79.4 kB
popprlogo.png
73.5 kB
rootrot2.png
33.2 kB
the_bibliography.bib
13.2 kB
unmod_dat.png
66.8 kB