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Prediction of horizontal gene transfer (HGT) using graph neural network

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This pipeline performs data splitting on precomputed HGT data and trains a graph neural network model.

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Acknowledgment

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    \n\t
  1. T. N. Kipf, M. Welling, Variational Graph Auto-Encoders, NIPS Workshop on Bayesian Deep Learning (2016)
    2. \n\t
  2. SNAP: Stanford Network Analysis Project
    3. \n\t
  3. TensorFlow (1.13.1)
    4. \n\t
  4. python (3.5.5)
    5. \n\t
  5. networkx
    6. \n\t
  6. scikit-learn
    7. \n\t
  7. scipy
    8. \n\t
  8. pandas
    9. \n\t
  9. numpy
    10. \n\t
  10. tqdm
    11. \n
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