Script of example R-code can be found in:
"Script_JAPPL_2020_01139.R"


*** Data files include:

1) Full data:
"dat_FULL_JAPPL_2020_01139.csv"

2) Data filtered on species richness:
"dat_SR_JAPPL_2020_01139.csv"

3) Data filtered on gadoid abundance:
"dat_Gadidae_JAPPL_2020_01139.csv"

4) Data filtered on labrid abundance:
"dat_Labridae_JAPPL_2020_01139.csv"

5) Data filtered on flatfish abundance:
"dat_Flatfish_JAPPL_2020_01139.csv"

6) Data filtered on demersal goby abundance:
"dat_Pelgo_JAPPL_2020_01139.csv"

7) Data filtered on benthic goby abundance:
"dat_Bengo_JAPPL_2020_01139.csv"

  
*** Supporting files (needed to run R-script) include:

1) Data matrix of species counts per deployment (BACI)
"Mat_sp_BACI"

2) Data matrix of species counts per deployment (SLOSS)
"Mat_sp_SLOSS"

3) Data matrix of site information per deployment (BACI)
"Mat_sites_BACI"

4) Data matrix of site information per deployment (SLOSS)
"Mat_sites_SLOSS"

5) Data matrix of vegetation coverage estimates:
"Mat_veg"

6) Data matrix of spatial reef configuration dummy variables:
"Mat_spat_SLOSS"

The supporting files above are loaded directly in R software
by running the corresponding R-code in the script
(after setting the appropriate working directory), e.g. 
> Mat_sp_BACI <- readRDS(file = "Mat_sp_BACI")


*** Definitions of variables in .csv files

- Deployment: unique identifier number assigned to a camera deployment

- Sequence: unique identifier number assigned to a 2-min video clip within a camera deployment

- Year: sampling year (either 2016: pre-restoration or 2018: post-restoration)

- Date: sampling date

- Treatment: name of the treatment, i.e. Control, Single Large (SL) or Several Small (SS)

- Site: name of the field site where sample was taken

- Film_No.: number of camera file as assigned by each GoPro camera 

- Species: species identification for the observed organism

- MaxN: relative abundance metric commonly used in underwater video surveys, i.e. the maximum
        number of individuals per species visible within a single video frame

- SR: species richness count, i.e. the number of unique species observed within a 2-min video clip
      (applicable to "SR" dataset only)

- Visibility: functional visibility in meters, i.e. visible distance from the camera as estimated
              by rope markers 

- logVis: functional visibility on the natural log-scale

- Eelgrass: estimated proportion (0-1) of seabed covered with eelgrass (Zostera marina)

- Algal_cov: estimated proportion (0-1) of seabed covered with macroalgae (other than eelgrass)

- Lon: longitudinal coordinate of camera deployment

- Lat: latitudinal coordinate of camera deployment

- Time_seq: numeric denoting sequential hourly recordings within a deployment, used to
            define an autoregressive temporal structure in the models.