column, description runID, simulation run identifier string N, number of individuals in the population R0_MEAN, mean individual reproductive number (R0) R0_CV, coefficient of variation in individual reproductive numbers (transmissibilities) TESTING_CADENCE, descriptor of testing cadence INIT_INCIDENCE, initial percentage of the population that has been previously infected (in the R compartment) INIT_VACCINE_UPTAKE, expected fraction of the population who are vaccinated at the beginning of the simulation VACCINE_EFFECTIVENESS, effectiveness of the vaccine (probability of vaccination leading to parameter changes per individual) VACCINE_TRANSMISSIBILITY_FACTOR, factor by which an individual's transmissibility is multiplied upon effective vaccination STOP_TESTING_VACCINE_DOSE, number of vaccine doses after which an individual no longer complies with testing STOP_ISOLATION_VACCINE_DOSE, number of vaccine doses after which an individual no longer complies with isolation AVG_INTRODUCTIONS_PER_DAY, rate of case introductions to the population per day degree_mean, mean degree of random network used in simulation degree_stdev, standard deviation of degree of random network used in simulation degree_95CI, 95% confidence interval of degree of random network used in simulation degree_CV, coefficent of variation of degree of random network used in simulation degree_CV2, squared coefficient of variation of degree of random network used in simulation assortativity, assortativity of degree of random network used in simulation cluster_coeff, clustering coefficient of random network used in simulation avg_path_length, average path length of random network used in simulation num_connected_comps, number of connected components of random network used in simulation latentPeriod_mean, mean latent period across individuals latentPeriod_stdev, standard deviation of latent period across individuals latentPeriod_95CI, 95% confidence interval for latent period across individuals presymptomaticPeriod_mean, mean presymptomatic period across individuals presymptomaticPeriod_stdev, standard deviation of presymptomatic period across individuals presymptomaticPeriod_95CI, 95% confidence interval for presymptomatic period across individuals totalIncubationPeriod_mean, mean incubation period across individuals totalIncubationPeriod_stdev, standard deviation of incubation period across individuals totalIncubationPeriod_95CI, 95% confidence interval for incubation period across individuals symptomaticPeriod_mean, mean symptomatic period across individuals symptomaticPeriod_stdev, standard deviation of symptomatic period across individuals symptomaticPeriod_95CI, 95% confidence interval for symptomatic period across individuals totalInfectiousPeriod_mean, mean infectious period across individuals totalInfectiousPeriod_stdev, standard deviation of infectious period across individuals totalInfectiousPeriod_95CI, 95% confidence interval for infectious period across individuals individualR0_mean, mean individual reproductive number period across individuals individualR0_stdev, standard deviation of individual reproductive number period across individuals individualR0_95CI, 95% confidence interval for individual reproductive number period across individuals total_num_infected, total number of infected individuals (including exogenous introduction cases) total_pct_infected, total percentage of the population infected (including exogenous introduction cases) total_num_fatality, total number of fatalities total_pct_fatality, total fatalities as a percentage of the population total_num_hospitalized, total number of hospitalizations total_pct_hospitalized, total hospitalizations as a percentage of the population peak_num_infected, peak number of infected individuals (including exogenous introduction cases) peak_pct_infected, peak percentage of the population infected (including exogenous introduction cases) peak_num_hospitalized, peak number of hospitalizations peak_pct_hospitalized, peak hospitalizations as a percentage of the population total_isolation_time, total number of days spent in isolation across the population total_num_infected_vaccinated, total number of infected individuals among vaccinated individuals total_pct_infected_vaccinated, total percentage of infected individuals among vaccinated individuals total_num_fatality_vaccinated, total number of fatalities among vaccinated individuals total_pct_fatality_vaccinated, total percentage of fatalities among vaccinated individuals total_num_hospitalized_vaccinated, total number of hospitalizations among vaccinated individuals total_pct_hospitalized_vaccinated, total percentage of hospitalizations among vaccinated individuals peak_num_infected_vaccinated, peak number of infected individuals among vaccinated individuals peak_pct_infected_vaccinated, peak percentage of infected individuals among vaccinated individuals peak_num_hospitalized_vaccinated, peak number of hospitalizations among vaccinated individuals peak_pct_hospitalized_vaccinated, peak percentage of hospitalizations among vaccinated individuals total_isolation_time_vaccinated, total number of person-days spent in isolation among vaccinated individuals total_num_infected_unvaccinated, total number of infected individuals among unvaccinated individuals total_pct_infected_unvaccinated, total percentage of infected individuals among unvaccinated individuals total_num_fatality_unvaccinated, total number of fatalities among unvaccinated individuals total_pct_fatality_unvaccinated, total percentage of fatalities among unvaccinated individuals total_num_hospitalized_unvaccinated, total number of hospitalizations among unvaccinated individuals total_pct_hospitalized_unvaccinated, total percentage of hospitalizations among unvaccinated individuals peak_num_infected_unvaccinated, peak number of infected individuals among unvaccinated individuals peak_pct_infected_unvaccinated, peak percentage of infected individuals among unvaccinated individuals peak_num_hospitalized_unvaccinated, peak number of hospitalizations among unvaccinated individuals peak_pct_hospitalized_unvaccinated, peak percentage of hospitalizations among unvaccinated individuals total_isolation_time_unvaccinated, total number of person-days spent in isolation among unvaccinated individuals total_num_infected_effectivelyVaccinated, total number of infected individuals among individuals with effective vaccination total_pct_infected_effectivelyVaccinated, total percentage of infected individuals among individuals with effective vaccination total_num_fatality_effectivelyVaccinated, total number of fatalities among individuals with effective vaccination total_pct_fatality_effectivelyVaccinated, total percentage of fatalities among individuals with effective vaccination total_num_hospitalized_effectivelyVaccinated, total number of hospitalizations among individuals with effective vaccination total_pct_hospitalized_effectivelyVaccinated, total percentage of hospitalizations among individuals with effective vaccination peak_num_infected_effectivelyVaccinated, peak number of infected individuals among individuals with effective vaccination peak_pct_infected_effectivelyVaccinated, peak percentage of infected individuals among individuals with effective vaccination peak_num_hospitalized_effectivelyVaccinated, peak number of hospitalizations among individuals with effective vaccination peak_pct_hospitalized_effectivelyVaccinated, peak percentage of hospitalizations among individuals with effective vaccination total_isolation_time_effectivelyVaccinated, total number of person-days spent in isolation among individuals with effective vaccination total_num_infected_effectivelyUnvaccinated, total number of infected individuals among individuals with ineffective vaccination total_pct_infected_effectivelyUnvaccinated, total percentage of infected individuals among individuals with ineffective vaccination total_num_fatality_effectivelyUnvaccinated, total number of fatalities among individuals with ineffective vaccination total_pct_fatality_effectivelyUnvaccinated, total percentage of fatalities among individuals with ineffective vaccination total_num_hospitalized_effectivelyUnvaccinated, total number of hospitalizations among individuals with ineffective vaccination total_pct_hospitalized_effectivelyUnvaccinated, total percentage of hospitalizations among individuals with ineffective vaccination peak_num_infected_effectivelyUnvaccinated, peak number of infected individuals among individuals with ineffective vaccination peak_pct_infected_effectivelyUnvaccinated, peak percentage of infected individuals among individuals with ineffective vaccination peak_num_hospitalized_effectivelyUnvaccinated, peak number of hospitalizations among individuals with ineffective vaccination peak_pct_hospitalized_effectivelyUnvaccinated, peak percentage of hospitalizations among individuals with ineffective vaccination total_isolation_time_effectivelyUnvaccinated, total number of person-days spent in isolation among individuals with ineffective vaccination sim_duration, length of simulation in days active_outbreak_duration, number of days from the first case to the first day with zero active cases total_num_tests, total number of tests administered total_num_tests_random, total number of tests administered due to cadence/random testing total_num_tests_symptomatic, total number of tests administered to symptomatic individuals total_num_tests_tracing, total number of tests administered as part of contact tracing total_num_positive_tests, total number of tests that return positive total_num_positive_tests_random, total number of tests administered due to cadence/random testing that return positive total_num_positive_tests_symptomatic, total number of tests administered to symptomatic individuals that return positive total_num_positive_tests_tracing, total number of tests administered as part of contact tracing that return positive total_num_isolations, total number of isolation periods initiated exposure_ratio, mean ratio of infectious days spent at large (i.e. not in isolation) to total infectious days per individual total_num_cases, total number of cases across the population (convenience column) total_pct_cases, total cases as a percentage of the population (convenience colmun)