Published August 3, 2021
| Version v1
Journal article
Open
Automated assignment of cell identity from single-cell multiplexed imaging and proteomic data
- 1. Lunenfeld-Tanenbaum Research Institute
- 2. Lunenfeld Tannenbaum Research Institute
Description
Files ending in "astir_assignments.csv" are Astir cell type assignment probabilities for five different IMC, CyTOF and CyCIF datasets comprising ~2.4 million total single cells. The raw data was produced by the following publications:
- Basel & Zurich: PMID 31959985
- Schapiro: PMID 28783155
- Wagner: PMID 30982598
- Lin: PMID 29993362
Cells are listed as rows while cell types are listed as columns.
Files starting with "assignments" are manual annotation of a 500 cells subset from the basel, zurich, wagner and lin cohorts. Each set of 500 cells was annotated twice by two annotators.
Files
basel_astir_assignments.csv
Files
(516.6 MB)
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