Major functions in the R package 'Luminescence'

[version: 0.9.14 ]

  Name Title Description Version m.Date m.Time Author Citation
1 analyse_Al2O3C_CrossTalk Al2O3:C Reader Cross Talk Analysis The function provides the analysis of cross-talk measurements on a FI lexsyg SMART reader using Al2O3:C chips 0.1.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_Al2O3C_CrossTalk(): Al2O3:C Reader Cross Talk Analysis. Function version 0.1.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
2 analyse_Al2O3C_ITC Al2O3 Irradiation Time Correction Analysis The function provides a very particular analysis to correct the irradiation time while irradiating Al2O3:C chips in a luminescence reader. 0.1.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_Al2O3C_ITC(): Al2O3 Irradiation Time Correction Analysis. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
3 analyse_Al2O3C_Measurement Al2O3:C Passive Dosimeter Measurement Analysis The function provides the analysis routines for measurements on a FI lexsyg SMART reader using Al2O3:C chips according to Kreutzer et al., 2018 0.2.5 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_Al2O3C_Measurement(): Al2O3:C Passive Dosimeter Measurement Analysis. Function version 0.2.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
4 analyse_baSAR Bayesian models (baSAR) applied on luminescence data This function allows the application of Bayesian models on luminescence data, measured with the single-aliquot regenerative-dose (SAR, Murray and Wintle, 2000) protocol. In particular, it follows the idea proposed by Combès et al., 2015 of using an hierarchical model for estimating a central equivalent dose from a set of luminescence measurements. This function is (I) the adoption of this approach for the R environment and (II) an extension and a technical refinement of the published code. 0.1.33 Norbert Mercier, IRAMAT-CRP2A, Université Bordeaux Montaigne (France)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
The underlying Bayesian model based on a contribution by Combès et al., 2015.
, RLum Developer Team
Mercier, N., Kreutzer, S., 2021. analyse_baSAR(): Bayesian models (baSAR) applied on luminescence data. Function version 0.1.33. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
5 analyse_FadingMeasurement Analyse fading measurements and returns the fading rate per decade (g-value) The function analysis fading measurements and returns a fading rate including an error estimation. The function is not limited to standard fading measurements, as can be seen, e.g., Huntley and Lamothe (2001). Additionally, the density of recombination centres (rho') is estimated after Kars et al. (2008). 0.1.19 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Kreutzer, S., Burow, C., 2021. analyse_FadingMeasurement(): Analyse fading measurements and returns the fading rate per decade (g-value). Function version 0.1.19. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
6 analyse_IRSAR.RF Analyse IRSAR RF measurements Function to analyse IRSAR RF measurements on K-feldspar samples, performed using the protocol according to Erfurt et al. (2003) and beyond. 0.7.8 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_IRSAR.RF(): Analyse IRSAR RF measurements. Function version 0.7.8. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
7 analyse_pIRIRSequence Analyse post-IR IRSL measurement sequences The function performs an analysis of post-IR IRSL sequences including curve fitting on RLum.Analysis objects. 0.2.4 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_pIRIRSequence(): Analyse post-IR IRSL measurement sequences. Function version 0.2.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
8 analyse_portableOSL Analyse portable CW-OSL measurements The function analyses CW-OSL curve data produced by a SUERC portable OSL reader and produces a combined plot of OSL/IRSL signal intensities, OSL/IRSL depletion ratios and the IRSL/OSL ratio. 0.0.3 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. analyse_portableOSL(): Analyse portable CW-OSL measurements. Function version 0.0.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
9 analyse_SAR.CWOSL Analyse SAR CW-OSL measurements The function performs a SAR CW-OSL analysis on an RLum.Analysis object including growth curve fitting. 0.9.11 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University
(United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_SAR.CWOSL(): Analyse SAR CW-OSL measurements. Function version 0.9.11. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
10 Analyse_SAR.OSLdata Analyse SAR CW-OSL measurements. The function analyses SAR CW-OSL curve data and provides a summary of the measured data for every position. The output of the function is optimised for SAR OSL measurements on quartz. 0.2.17 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Margret C. Fuchs, HZDR, Freiberg (Germany)
, RLum Developer Team
Kreutzer, S., Fuchs, M.C., 2021. Analyse_SAR.OSLdata(): Analyse SAR CW-OSL measurements.. Function version 0.2.17. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
11 analyse_SAR.TL Analyse SAR TL measurements The function performs a SAR TL analysis on a RLum.Analysis object including growth curve fitting. 0.3.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_SAR.TL(): Analyse SAR TL measurements. Function version 0.3.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
12 app_RLum Run Luminescence shiny apps (wrapper) Wrapper for the function RLumShiny::app_RLum from the package RLumShiny::RLumShiny-package . For further details and examples please see the manual of this package. 0.1.1 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. app_RLum(): Run Luminescence shiny apps (wrapper). Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
13 apply_CosmicRayRemoval Function to remove cosmic rays from an RLum.Data.Spectrum S4 class object The function provides several methods for cosmic-ray removal and spectrum smoothing RLum.Data.Spectrum objects and such objects embedded in list or RLum.Analysis objects. 0.3.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. apply_CosmicRayRemoval(): Function to remove cosmic rays from an RLum.Data.Spectrum S4 class object. Function version 0.3.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
14 apply_EfficiencyCorrection Function to apply spectral efficiency correction to RLum.Data.Spectrum S4
class objects
The function allows spectral efficiency corrections for RLum.Data.Spectrum S4 class objects 0.2.0 Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS-Université Bordeaux Montaigne (France)
Johannes Friedrich, University of Bayreuth (Germany)
, RLum Developer Team
Kreutzer, S., Friedrich, J., 2021. apply_EfficiencyCorrection(): Function to apply spectral efficiency correction to RLum.Data.Spectrum S4 class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
15 as as() - RLum-object coercion for [RLum.Analysis-class] for [RLum.Data.Curve-class] for [RLum.Data.Image-class] for [RLum.Data.Spectrum-class] for [RLum.Results-class]
16 BaseDataSet.ConversionFactors Base data set of dose-rate conversion factors Collection of published dose-rate conversion factors to convert concentrations of radioactive isotopes to dose rate values.
17 BaseDataSet.CosmicDoseRate Base data set for cosmic dose rate calculation Collection of data from various sources needed for cosmic dose rate calculation
18 BaseDataSet.FractionalGammaDose Base data set of fractional gamma-dose values Collection of (un-)published fractional gamma dose-rate values to scale the gamma-dose rate considering layer-to-layer variations in soil radioactivity.
19 BaseDataSet.GrainSizeAttenuation Base dataset for grain size attenuation data by Guérin et al. (2012) Grain size correction data for beta-dose rates published by Guérin et al. (2012). #' @format A data.frame seven columns and sixteen rows. Column headers are GrainSize , Q_K , FS_K , Q_Th , FS_Th , Q_U , FS_U . Grain sizes are quoted in µm (e.g., 20, 40, 60 etc.)
20 bin_RLum.Data Channel binning - method dispatcher Function calls the object-specific bin functions for RLum.Data S4 class objects. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. bin_RLum.Data(): Channel binning - method dispatcher. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
21 calc_AliquotSize Estimate the amount of grains on an aliquot Estimate the number of grains on an aliquot. Alternatively, the packing density of an aliquot is computed. 0.31 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. calc_AliquotSize(): Estimate the amount of grains on an aliquot. Function version 0.31. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
22 calc_AverageDose Calculate the Average Dose and the dose rate dispersion This functions calculates the Average Dose and their extrinsic dispersion and estimates the standard errors by bootstrapping based on the Average Dose Model by Guerin et al., 2017 0.1.4 Claire Christophe, IRAMAT-CRP2A, Université de Nantes (France),
Anne Philippe, Université de Nantes, (France),
Guillaume Guérin, IRAMAT-CRP2A, Université Bordeaux Montaigne, (France),
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Christophe, C., Philippe, A., Kreutzer, S., 2021. calc_AverageDose(): Calculate the Average Dose and the dose rate dispersion. Function version 0.1.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
23 calc_CentralDose Apply the central age model (CAM) after Galbraith et al. (1999) to a given
De distribution
This function calculates the central dose and dispersion of the De distribution, their standard errors and the profile log likelihood function for sigma. 1.4.0 Christoph Burow, University of Cologne (Germany)
Based on a rewritten S script of Rex Galbraith, 2010
, RLum Developer Team
Burow, C., 2021. calc_CentralDose(): Apply the central age model (CAM) after Galbraith et al. (1999) to a given De distribution. Function version 1.4.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
24 calc_CobbleDoseRate Calculate dose rate of slices in a spherical cobble Calculates the dose rate profile through the cobble based on Riedesel and Autzen (2020). Corrects the beta dose rate in the cobble for the grain size following results of Guérin et al. (2012). Sediment beta and gamma dose rates are corrected for the water content of the sediment using the correction factors of Aitken (1985). Water content in the cobble is assumed to be 0. 0.1.0 Svenja Riedesel, Aberystwyth University (United Kingdom)
Martin Autzen, DTU NUTECH Center for Nuclear Technologies (Denmark)
, RLum Developer Team
Riedesel, S., Autzen, M., 2021. calc_CobbleDoseRate(): Calculate dose rate of slices in a spherical cobble. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
25 calc_CommonDose Apply the (un-)logged common age model after Galbraith et al. (1999) to a
given De distribution
Function to calculate the common dose of a De distribution. 0.1.1 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. calc_CommonDose(): Apply the (un-)logged common age model after Galbraith et al. (1999) to a given De distribution. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
26 calc_CosmicDoseRate Calculate the cosmic dose rate This function calculates the cosmic dose rate taking into account the soft- and hard-component of the cosmic ray flux and allows corrections for geomagnetic latitude, altitude above sea-level and geomagnetic field changes. 0.5.2 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. calc_CosmicDoseRate(): Calculate the cosmic dose rate. Function version 0.5.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
27 calc_FadingCorr Apply a fading correction according to Huntley & Lamothe (2001) for a given
g-value and a given tc
This function solves the equation used for correcting the fading affected age including the error for a given g-value according to Huntley & Lamothe (2001). 0.4.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. calc_FadingCorr(): Apply a fading correction according to Huntley & Lamothe (2001) for a given g-value and a given tc. Function version 0.4.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
28 calc_FastRatio Calculate the Fast Ratio for CW-OSL curves Function to calculate the fast ratio of quartz CW-OSL single grain or single aliquot curves after Durcan & Duller (2011). 0.1.1 Georgina E. King, University of Bern (Switzerland)
Julie A. Durcan, University of Oxford (United Kingdom)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
King, G.E., Durcan, J., Burow, C., 2021. calc_FastRatio(): Calculate the Fast Ratio for CW-OSL curves. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
29 calc_FiniteMixture Apply the finite mixture model (FMM) after Galbraith (2005) to a given De
distribution
This function fits a k-component mixture to a De distribution with differing known standard errors. Parameters (doses and mixing proportions) are estimated by maximum likelihood assuming that the log dose estimates are from a mixture of normal distributions. 0.4.2 Christoph Burow, University of Cologne (Germany)
Based on a rewritten S script of Rex Galbraith, 2006.
, RLum Developer Team
Burow, C., 2021. calc_FiniteMixture(): Apply the finite mixture model (FMM) after Galbraith (2005) to a given De distribution. Function version 0.4.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
30 calc_FuchsLang2001 Apply the model after Fuchs & Lang (2001) to a given De distribution. This function applies the method according to Fuchs & Lang (2001) for heterogeneously bleached samples with a given coefficient of variation threshold. 0.4.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Kreutzer, S., Burow, C., 2021. calc_FuchsLang2001(): Apply the model after Fuchs & Lang (2001) to a given De distribution.. Function version 0.4.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
31 calc_gSGC_feldspar Calculate Global Standardised Growth Curve (gSGC) for Feldspar MET-pIRIR Implementation of the gSGC approach for feldspar MET-pIRIR by Li et al. (2015) 0.1.0 Harrison Gray, USGS (United States),
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Gray, H.J., Kreutzer, S., 2021. calc_gSGC_feldspar(): Calculate Global Standardised Growth Curve (gSGC) for Feldspar MET-pIRIR. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
32 calc_gSGC Calculate De value based on the gSGC by Li et al., 2015 Function returns De value and De value error using the global standardised growth curve (gSGC) assumption proposed by Li et al., 2015 for OSL dating of sedimentary quartz 0.1.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. calc_gSGC(): Calculate De value based on the gSGC by Li et al., 2015. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
33 calc_HomogeneityTest Apply a simple homogeneity test after Galbraith (2003) A simple homogeneity test for De estimates 0.3.0 Christoph Burow, University of Cologne (Germany), Sebastian Kreutzer,
IRAMAT-CRP2A, Université Bordeaux Montaigne (France)
, RLum Developer Team
Burow, C., Kreutzer, S., 2021. calc_HomogeneityTest(): Apply a simple homogeneity test after Galbraith (2003). Function version 0.3.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
34 calc_Huntley2006 Apply the Huntley (2006) model A function to calculate the expected sample specific fraction of saturation based on the model of Huntley (2006) using the approach as implemented in Kars et al. (2008) or Guralnik et al. (2015). 0.4.1 Georgina E. King, University of Bern (Switzerland)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
King, G.E., Burow, C., 2021. calc_Huntley2006(): Apply the Huntley (2006) model. Function version 0.4.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
35 calc_IEU Apply the internal-external-uncertainty (IEU) model after Thomsen et al.
(2007) to a given De distribution
Function to calculate the IEU De for a De data set. 0.1.1 Rachel Smedley, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Based on an excel spreadsheet and accompanying macro written by Kristina Thomsen.
, RLum Developer Team
Smedley, R.K., 2021. calc_IEU(): Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
36 calc_Kars2008 Apply the Kars et al. (2008) model (deprecated) A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006). This function is deprecated and will eventually be removed. Please use calc_Huntley2006() instead. 0.4.0 Georgina E. King, University of Bern (Switzerland)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
King, G.E., Burow, C., 2021. calc_Kars2008(): Apply the Kars et al. (2008) model (deprecated). Function version 0.4.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
37 calc_Lamothe2003 Apply fading correction after Lamothe et al., 2003 This function applies the fading correction for the prediction of long-term fading as suggested by Lamothe et al., 2003. The function basically adjusts the Ln/Tn values and fit a new dose-response curve using the function plot_GrowthCurve . 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom), Norbert Mercier,
IRAMAT-CRP2A, Université Bordeaux Montaigne (France)
, RLum Developer Team
Kreutzer, S., Mercier, N., 2021. calc_Lamothe2003(): Apply fading correction after Lamothe et al., 2003. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
38 calc_MaxDose Apply the maximum age model to a given De distribution Function to fit the maximum age model to De data. This is a wrapper function that calls calc_MinDose and applies a similar approach as described in Olley et al. (2006). 0.3.1 Christoph Burow, University of Cologne (Germany)
Based on a rewritten S script of Rex Galbraith, 2010
, RLum Developer Team
Burow, C., 2021. calc_MaxDose(): Apply the maximum age model to a given De distribution. Function version 0.3.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
39 calc_MinDose Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999)
to a given De distribution
Function to fit the (un-)logged three or four parameter minimum dose model (MAM-3/4) to De data. 0.4.4 Christoph Burow, University of Cologne (Germany)
Based on a rewritten S script of Rex Galbraith, 2010
The bootstrap approach is based on a rewritten MATLAB script of Alastair Cunningham.
Alastair Cunningham is thanked for his help in implementing and cross-checking the code.
, RLum Developer Team
Burow, C., 2021. calc_MinDose(): Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) to a given De distribution. Function version 0.4.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
40 calc_OSLLxTxDecomposed Calculate Lx/Tx ratio for decomposed CW-OSL signal components Calculate Lx/Tx ratios from a given set of decomposed CW-OSL curves decomposed by [OSLdecomposition::RLum.OSL_decomposition] 0.1.0 Dirk Mittelstrass
, RLum Developer Team
Mittelstrass, D., 2021. calc_OSLLxTxDecomposed(): Calculate Lx/Tx ratio for decomposed CW-OSL signal components. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
41 calc_OSLLxTxRatio Calculate Lx/Tx ratio for CW-OSL curves Calculate Lx/Tx ratios from a given set of CW-OSL curves assuming late light background subtraction. 0.8.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. calc_OSLLxTxRatio(): Calculate Lx/Tx ratio for CW-OSL curves. Function version 0.8.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
42 calc_SourceDoseRate Calculation of the source dose rate via the date of measurement Calculating the dose rate of the irradiation source via the date of measurement based on: source calibration date, source dose rate, dose rate error. The function returns a data.frame that provides the input argument dose_rate for the function Second2Gray . 0.3.2 Margret C. Fuchs, HZDR, Helmholtz-Institute Freiberg for Resource Technology (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Fuchs, M.C., Kreutzer, S., 2021. calc_SourceDoseRate(): Calculation of the source dose rate via the date of measurement. Function version 0.3.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
43 calc_Statistics Function to calculate statistic measures This function calculates a number of descriptive statistics for estimates with a given standard error (SE), most fundamentally using error-weighted approaches. 0.1.7 Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Dietze, M., 2021. calc_Statistics(): Function to calculate statistic measures. Function version 0.1.7. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
44 calc_ThermalLifetime Calculates the Thermal Lifetime using the Arrhenius equation The function calculates the thermal lifetime of charges for given E (in eV), s (in 1/s) and T (in deg. C.) parameters. The function can be used in two operational modes: 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. calc_ThermalLifetime(): Calculates the Thermal Lifetime using the Arrhenius equation. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
45 calc_TLLxTxRatio Calculate the Lx/Tx ratio for a given set of TL curves -beta version- Calculate Lx/Tx ratio for a given set of TL curves. 0.3.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Christoph Schmidt, University of Bayreuth (Germany)
, RLum Developer Team
Kreutzer, S., Schmidt, C., 2021. calc_TLLxTxRatio(): Calculate the Lx/Tx ratio for a given set of TL curves -beta version-. Function version 0.3.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
46 calc_WodaFuchs2008 Obtain the equivalent dose using the approach by Woda and Fuchs 2008 The function generates a histogram-like reorganisation of the data, to assess counts per bin. The log-transformed counts per bin are used to calculate the second derivative of the data (i.e., the curvature of the curve) and to find the central value of the bin hosting the distribution maximum. A normal distribution model is fitted to the counts per bin data to estimate the dose distribution parameters. The uncertainty of the model is estimated based on all input equivalent doses smaller that of the modelled central value. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom),
Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., 2021. calc_WodaFuchs2008(): Obtain the equivalent dose using the approach by Woda and Fuchs 2008. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
47 convert_Activity2Concentration Convert Nuclide Activities to Concentrations and Vice Versa The function performs the conversion of the specific activities into concentrations and vice versa for the nuclides U-238, Th-232 and K-40 to harmonise the measurement unit with the required data input unit of potential analytical tools for, e.g. dose rate calculation or related functions such as use_DRAC . 0.1.0 Margret C. Fuchs, Helmholtz-Institute Freiberg for Resource Technology (Germany)
, RLum Developer Team
Fuchs, M.C., 2021. convert_Activity2Concentration(): Convert Nuclide Activities to Concentrations and Vice Versa. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
48 convert_BIN2CSV Export Risoe BIN-file(s) to CSV-files This function is a wrapper function around the functions read_BIN2R and write_RLum2CSV and it imports a Risoe BIN-file and directly exports its content to CSV-files. If nothing is set for the argument path ( write_RLum2CSV ) the input folder will become the output folder. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_BIN2CSV(): Export Risoe BIN-file(s) to CSV-files. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
49 convert_Concentration2DoseRate Dose-rate conversion function This function converts radionuclide concentrations (K in %, Th and U in ppm) into dose rates (Gy/ka). Beta-dose rates are also attenuated for the grain size. Beta and gamma-dose rates are corrected for the water content. This function converts concentrations into dose rates (Gy/ka) and corrects for grain size attenuation and water content Dose rate conversion factors can be chosen from Adamiec and Aitken (1998), Guerin et al. (2011), Liritzis et al. (201) and Cresswell et al. (2018). Default is Guerin et al. (2011). Grain size correction for beta dose rates is achieved using the correction factors published by Guérin et al. (2012). Water content correction is based on factors provided by Aitken (1985), with the factor for beta dose rate being 1.25 and for gamma 1.14. 0.1.0 Svenja Riedesel, Aberystwyth University (United Kingdom)
Martin Autzen, DTU NUTECH Center for Nuclear Technologies (Denmark)
, RLum Developer Team
Riedesel, S., Autzen, M., 2021. convert_Concentration2DoseRate(): Dose-rate conversion function. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
50 convert_Daybreak2CSV Export measurement data produced by a Daybreak luminescence reader to CSV-files This function is a wrapper function around the functions read_Daybreak2R and write_RLum2CSV and it imports an Daybreak-file (TXT-file, DAT-file) and directly exports its content to CSV-files. If nothing is set for the argument path ( write_RLum2CSV ) the input folder will become the output folder. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_Daybreak2CSV(): Export measurement data produced by a Daybreak luminescence reader to CSV-files. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
51 convert_PSL2CSV Export PSL-file(s) to CSV-files This function is a wrapper function around the functions read_PSL2R and write_RLum2CSV and it imports an PSL-file (SUERC portable OSL reader file format) and directly exports its content to CSV-files. If nothing is set for the argument path ( write_RLum2CSV ) the input folder will become the output folder. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_PSL2CSV(): Export PSL-file(s) to CSV-files. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
52 convert_RLum2Risoe.BINfileData Converts RLum.Analysis-objects and RLum.Data.Curve-objects to RLum2Risoe.BINfileData-objects The functions converts RLum.Analysis and RLum.Data.Curve objects and a list of those to Risoe.BINfileData objects. The function intends to provide a minimum of compatibility between both formats. The created RLum.Analysis object can be later exported to a BIN-file using the function write_R2BIN . 0.1.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_RLum2Risoe.BINfileData(): Converts RLum.Analysis-objects and RLum.Data.Curve-objects to RLum2Risoe.BINfileData-objects. Function version 0.1.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
53 convert_SG2MG Converts Single-Grain Data to Multiple-Grain Data Conversion of single-grain data to multiple-grain data by adding signals from grains belonging to one disc (unique pairs of position, set and run). 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom), Norbert Mercier, IRAMAT-CRP2A, UMR 5060, CNRS-Université Bordeaux Montaigne (France);
, RLum Developer Team
Kreutzer, S., Mercier, N., 2021. convert_SG2MG(): Converts Single-Grain Data to Multiple-Grain Data. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
54 convert_Wavelength2Energy Emission Spectra Conversion from Wavelength to Energy Scales The function provides a convenient and fast way to convert emission spectra wavelength to energy scales. The function works on RLum.Data.Spectrum , data.frame and matrix and a list of such objects. The function was written to smooth the workflow while analysing emission spectra data. This is in particular useful if you want to further treat your data and apply, e.g., a signal deconvolution. 0.1.1 Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS - Université Bordeaux Montaigne (France)
, RLum Developer Team
Kreutzer, S., 2021. convert_Wavelength2Energy(): Emission Spectra Conversion from Wavelength to Energy Scales. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
55 convert_XSYG2CSV Export XSYG-file(s) to CSV-files This function is a wrapper function around the functions read_XSYG2R and write_RLum2CSV and it imports an XSYG-file and directly exports its content to CSV-files. If nothing is set for the argument path ( write_RLum2CSV ) the input folder will become the output folder. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_XSYG2CSV(): Export XSYG-file(s) to CSV-files. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
56 CW2pHMi Transform a CW-OSL curve into a pHM-OSL curve via interpolation under
hyperbolic modulation conditions
This function transforms a conventionally measured continuous-wave (CW) OSL-curve to a pseudo hyperbolic modulated (pHM) curve under hyperbolic modulation conditions using the interpolation procedure described by Bos & Wallinga (2012). 0.2.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Based on comments and suggestions from:
Adrie J.J. Bos, Delft University of Technology, The Netherlands
, RLum Developer Team
Kreutzer, S., 2021. CW2pHMi(): Transform a CW-OSL curve into a pHM-OSL curve via interpolation under hyperbolic modulation conditions. Function version 0.2.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
57 CW2pLM Transform a CW-OSL curve into a pLM-OSL curve Transforms a conventionally measured continuous-wave (CW) curve into a pseudo linearly modulated (pLM) curve using the equations given in Bulur (2000). 0.4.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. CW2pLM(): Transform a CW-OSL curve into a pLM-OSL curve. Function version 0.4.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
58 CW2pLMi Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear
modulation conditions
Transforms a conventionally measured continuous-wave (CW) OSL-curve into a pseudo linearly modulated (pLM) curve under linear modulation conditions using the interpolation procedure described by Bos & Wallinga (2012). 0.3.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)

Based on comments and suggestions from:
Adrie J.J. Bos, Delft University of Technology, The Netherlands
, RLum Developer Team
Kreutzer, S., 2021. CW2pLMi(): Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear modulation conditions. Function version 0.3.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
59 CW2pPMi Transform a CW-OSL curve into a pPM-OSL curve via interpolation under
parabolic modulation conditions
Transforms a conventionally measured continuous-wave (CW) OSL-curve into a pseudo parabolic modulated (pPM) curve under parabolic modulation conditions using the interpolation procedure described by Bos & Wallinga (2012). 0.2.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)

Based on comments and suggestions from:
Adrie J.J. Bos, Delft University of Technology, The Netherlands
, RLum Developer Team
Kreutzer, S., 2021. CW2pPMi(): Transform a CW-OSL curve into a pPM-OSL curve via interpolation under parabolic modulation conditions. Function version 0.2.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
60 ExampleData.Al2O3C Example Al2O3:C Measurement Data Measurement data obtained from measuring Al2O3:C chips at the IRAMAT-CRP2A, Université Bordeaux Montaigne in 2017 on a Freiberg Instruments lexsyg SMART reader. The example data used in particular to allow test of the functions developed in framework of the work by Kreutzer et al., 2018.
61 ExampleData.BINfileData Example data from a SAR OSL and SAR TL measurement for the package
Luminescence
Example data from a SAR OSL and TL measurement for package Luminescence directly extracted from a Risoe BIN-file and provided in an object of type Risoe.BINfileData
62 ExampleData.CobbleData Example data for calc_CobbleDoseRate() An example data set for the function calc_CobbleDoseRate containing layer specific information for the cobble to be used in the function.
63 ExampleData.CW_OSL_Curve Example CW-OSL curve data for the package Luminescence data.frame containing CW-OSL curve data (time, counts)
64 ExampleData.DeValues Example De data sets for the package Luminescence Equivalent dose (De) values measured for a fine grain quartz sample from a loess section in Rottewitz (Saxony/Germany) and for a coarse grain quartz sample from a fluvial deposit in the rock shelter of Cueva Anton (Murcia/Spain).
65 ExampleData.Fading Example data for feldspar fading measurements Example data set for fading measurements of the IR50, IR100, IR150 and IR225 feldspar signals of sample UNIL/NB123. It further contains regular equivalent dose measurement data of the same sample, which can be used to apply a fading correction to.
66 ExampleData.FittingLM Example data for fit_LMCurve() in the package Luminescence Linearly modulated (LM) measurement data from a quartz sample from Norway including background measurement. Measurements carried out in the luminescence laboratory at the University of Bayreuth.
67 ExampleData.LxTxData Example Lx/Tx data from CW-OSL SAR measurement LxTx data from a SAR measurement for the package Luminescence.
68 ExampleData.LxTxOSLData Example Lx and Tx curve data from an artificial OSL measurement Lx and Tx data of continuous wave (CW-) OSL signal curves.
69 ExampleData.portableOSL Example portable OSL curve data for the package Luminescence A list of RLum.Analysis objects, each containing the same number of RLum.Data.Curve objects representing individual OSL, IRSL and dark count measurements of a sample.
70 ExampleData.RLum.Analysis Example data as RLum.Analysis objects Collection of different RLum.Analysis objects for protocol analysis.
71 ExampleData.RLum.Data.Image Example data as RLum.Data.Image objects Measurement of Princton Instruments camera imported with the function read_SPE2R to R to produce an RLum.Data.Image object.
72 ExampleData.ScaleGammaDose Example data for scale_GammaDose() An example data set for the function scale_GammaDose() containing layer specific information to scale the gamma dose rate considering variations in soil radioactivity.
73 ExampleData.SurfaceExposure Example OSL surface exposure dating data A set of synthetic OSL surface exposure dating data to demonstrate the fit_SurfaceExposure functionality. See examples to reproduce the data interactively.
74 ExampleData.TR_OSL Example TR-OSL data Single TR-OSL curve obtained by Schmidt et al. (under review) for quartz sample BT729 (origin: Trebgast Valley, Germany, quartz, 90-200 µm, unpublished data).
75 ExampleData.XSYG Example data for a SAR OSL measurement and a TL spectrum using a lexsyg
reader
Example data from a SAR OSL measurement and a TL spectrum for package Luminescence imported from a Freiberg Instruments XSYG file using the function read_XSYG2R .
76 extdata Collection of External Data Description and listing of data provided in the folder data/extdata
77 extract_IrradiationTimes Extract Irradiation Times from an XSYG-file Extracts irradiation times, dose and times since last irradiation, from a Freiberg Instruments XSYG-file. These information can be further used to update an existing BINX-file. 0.3.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. extract_IrradiationTimes(): Extract Irradiation Times from an XSYG-file. Function version 0.3.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
78 fit_CWCurve Nonlinear Least Squares Fit for CW-OSL curves -beta version- The function determines the weighted least-squares estimates of the component parameters of a CW-OSL signal for a given maximum number of components and returns various component parameters. The fitting procedure uses the nls function with the port algorithm. 0.5.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. fit_CWCurve(): Nonlinear Least Squares Fit for CW-OSL curves -beta version-. Function version 0.5.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
79 fit_LMCurve Nonlinear Least Squares Fit for LM-OSL curves The function determines weighted nonlinear least-squares estimates of the component parameters of an LM-OSL curve (Bulur 1996) for a given number of components and returns various component parameters. The fitting procedure uses the function nls with the port algorithm. 0.3.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. fit_LMCurve(): Nonlinear Least Squares Fit for LM-OSL curves. Function version 0.3.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
80 fit_OSLLifeTimes Fitting and Deconvolution of OSL Lifetime Components Fitting and Deconvolution of OSL Lifetime Components 0.1.5 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University,
Christoph Schmidt, University of Bayreuth (Germany)
, RLum Developer Team
Kreutzer, S., Schmidt, C., 2021. fit_OSLLifeTimes(): Fitting and Deconvolution of OSL Lifetime Components. Function version 0.1.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
81 fit_SurfaceExposure Nonlinear Least Squares Fit for OSL surface exposure data This function determines the (weighted) least-squares estimates of the parameters of either equation 1 in Sohbati et al. (2012a) or equation 12 in Sohbati et al. (2012b) for a given OSL surface exposure data set ( BETA ). 0.1.0 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. fit_SurfaceExposure(): Nonlinear Least Squares Fit for OSL surface exposure data. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
82 fit_ThermalQuenching Fitting Thermal Quenching Data Applying a nls-fitting to thermal quenching data. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. fit_ThermalQuenching(): Fitting Thermal Quenching Data. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
83 get_Layout Collection of layout definitions This helper function returns a list with layout definitions for homogeneous plotting. 0.1 Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Dietze, M., 2021. get_Layout(): Collection of layout definitions. Function version 0.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
84 get_Quote Function to return essential quotes This function returns one of the collected essential quotes in the growing library. If called without any parameters, a random quote is returned. 0.1.5 Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer, Geography & Earth Science, Aberystwyth University (United Kingdom), Dirk Mittelstraß, TU Dresden (Germany)
, RLum Developer Team
Dietze, M., Kreutzer, S., 2021. get_Quote(): Function to return essential quotes. Function version 0.1.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
85 get_rightAnswer Function to get the right answer This function returns just the right answer 0.1.0 inspired by R.G.
, RLum Developer Team
NA, NA, , , 2021. get_rightAnswer(): Function to get the right answer. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
86 get_Risoe.BINfileData General accessor function for RLum S4 class objects Function calls object-specific get functions for RisoeBINfileData S4 class objects. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. get_Risoe.BINfileData(): General accessor function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
87 get_RLum General accessors function for RLum S4 class objects Function calls object-specific get functions for RLum S4 class objects. 0.3.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. get_RLum(): General accessors function for RLum S4 class objects. Function version 0.3.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
88 GitHub-API GitHub API R Interface to the GitHub API v3. 0.1.0 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. GitHub-API(): GitHub API. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
89 install_DevelopmentVersion Attempts to install the development version of the 'Luminescence' package This function is a convenient method for installing the development version of the R package 'Luminescence' directly from GitHub.
90 length_RLum General accessor function for RLum S4 class objects Function calls object-specific get functions for RLum S4 class objects. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
(France)
, RLum Developer Team
Kreutzer, S., 2021. length_RLum(): General accessor function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
91 merge_Risoe.BINfileData Merge Risoe.BINfileData objects or Risoe BIN-files Function allows merging Risoe BIN/BINX files or Risoe.BINfileData objects. 0.2.7 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_Risoe.BINfileData(): Merge Risoe.BINfileData objects or Risoe BIN-files. Function version 0.2.7. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
92 merge_RLum.Analysis Merge function for RLum.Analysis S4 class objects Function allows merging of RLum.Analysis objects and adding of allowed objects to an RLum.Analysis. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_RLum.Analysis(): Merge function for RLum.Analysis S4 class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
93 merge_RLum.Data.Curve Merge function for RLum.Data.Curve S4 class objects Function allows merging of RLum.Data.Curve objects in different ways 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_RLum.Data.Curve(): Merge function for RLum.Data.Curve S4 class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
94 merge_RLum General merge function for RLum S4 class objects Function calls object-specific merge functions for RLum S4 class objects. 0.1.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_RLum(): General merge function for RLum S4 class objects. Function version 0.1.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
95 merge_RLum.Results Merge function for RLum.Results S4-class objects Function merges objects of class RLum.Results . The slots in the objects are combined depending on the object type, e.g., for data.frame and matrix rows are appended. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_RLum.Results(): Merge function for RLum.Results S4-class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
96 methods_RLum methods_RLum Methods for S3-generics implemented for the package 'Luminescence'. This document summarises all implemented S3-generics. The name of the function is given before the first dot, after the dot the name of the object that is supported by this method is given, e.g. plot.RLum.Data.Curve can be called by plot(object, ...) , where object is the RLum.Data.Curve object.
97 names_RLum S4-names function for RLum S4 class objects Function calls object-specific names functions for RLum S4 class objects. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. names_RLum(): S4-names function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
98 plot_AbanicoPlot Function to create an Abanico Plot. A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values. 0.1.15 Michael Dietze, GFZ Potsdam (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Inspired by a plot introduced by Galbraith & Green (1990)
, RLum Developer Team
Dietze, M., Kreutzer, S., 2021. plot_AbanicoPlot(): Function to create an Abanico Plot.. Function version 0.1.15. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
99 plot_DetPlot Create De(t) plot Plots the equivalent dose (De) in dependency of the chosen signal integral (cf. Bailey et al., 2003). The function is simply passing several arguments to the function plot and the used analysis functions and runs it in a loop. Example: legend.pos for legend position, legend for legend text. 0.1.3 Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
NA, NA, , , 2021. plot_DetPlot(): Create De(t) plot. Function version 0.1.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
100 plot_DRCSummary Create a Dose-Response Curve Summary Plot While analysing OSL SAR or pIRIR-data the view on the data is limited usually to one dose-response curve (DRC) at the time for one aliquot. This function overcomes this limitation by plotting all DRC from an RLum.Results object created by the function analyse_SAR.CWOSL in one single plot. 0.2.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Christoph Burow, University of Cologne
, RLum Developer Team
Kreutzer, S., Burow, C., 2021. plot_DRCSummary(): Create a Dose-Response Curve Summary Plot. Function version 0.2.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
101 plot_DRTResults Visualise dose recovery test results The function provides a standardised plot output for dose recovery test measurements. 0.1.13 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., 2021. plot_DRTResults(): Visualise dose recovery test results. Function version 0.1.13. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
102 plot_FilterCombinations Plot filter combinations along with the (optional) net transmission window The function allows to plot transmission windows for different filters. Missing data for specific wavelengths are automatically interpolated for the given filter data using the function approx . With that a standardised output is reached and a net transmission window can be shown. 0.3.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_FilterCombinations(): Plot filter combinations along with the (optional) net transmission window. Function version 0.3.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
103 plot_GrowthCurve Fit and plot a growth curve for luminescence data (Lx/Tx against dose) A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extrapolation to calculate the equivalent dose. 1.11.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., 2021. plot_GrowthCurve(): Fit and plot a growth curve for luminescence data (Lx/Tx against dose). Function version 1.11.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
104 plot_Histogram Plot a histogram with separate error plot Function plots a predefined histogram with an accompanying error plot as suggested by Rex Galbraith at the UK LED in Oxford 2010. 0.4.5 Michael Dietze, GFZ Potsdam (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Dietze, M., Kreutzer, S., 2021. plot_Histogram(): Plot a histogram with separate error plot. Function version 0.4.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
105 plot_KDE Plot kernel density estimate with statistics Plot a kernel density estimate of measurement values in combination with the actual values and associated error bars in ascending order. If enabled, the boxplot will show the usual distribution parameters (median as bold line, box delimited by the first and third quartile, whiskers defined by the extremes and outliers shown as points) and also the mean and standard deviation as pale bold line and pale polygon, respectively. 3.6.0 Michael Dietze, GFZ Potsdam (Germany)
Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Dietze, M., 2021. plot_KDE(): Plot kernel density estimate with statistics. Function version 3.6.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
106 plot_NRt Visualise natural/regenerated signal ratios This function creates a Natural/Regenerated signal vs. time (NR(t)) plot as shown in Steffen et al. 2009 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. plot_NRt(): Visualise natural/regenerated signal ratios. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
107 plot_RadialPlot Function to create a Radial Plot A Galbraith's radial plot is produced on a logarithmic or a linear scale. 0.5.5 Michael Dietze, GFZ Potsdam (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Based on a rewritten S script of Rex Galbraith, 2010
, RLum Developer Team
Dietze, M., Kreutzer, S., 2021. plot_RadialPlot(): Function to create a Radial Plot. Function version 0.5.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
108 plot_Risoe.BINfileData Plot single luminescence curves from a BIN file object Plots single luminescence curves from an object returned by the read_BIN2R function. 0.4.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., 2021. plot_Risoe.BINfileData(): Plot single luminescence curves from a BIN file object. Function version 0.4.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
109 plot_RLum.Analysis Plot function for an RLum.Analysis S4 class object The function provides a standardised plot output for curve data of an RLum.Analysis S4 class object 0.3.13 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum.Analysis(): Plot function for an RLum.Analysis S4 class object. Function version 0.3.13. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
110 plot_RLum.Data.Curve Plot function for an RLum.Data.Curve S4 class object The function provides a standardised plot output for curve data of an RLum.Data.Curve S4-class object. 0.2.5 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum.Data.Curve(): Plot function for an RLum.Data.Curve S4 class object. Function version 0.2.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
111 plot_RLum.Data.Image Plot function for an RLum.Data.Image S4 class object The function provides a standardised plot output for image data of an RLum.Data.Image S4 class object, mainly using the plot functions provided by the raster package. Details on the plot functions Image is visualised as 2D plot using generic plot types provided by other packages. Supported plot types: plot.type = "plot.raster" Uses the standard plot function for raster data from the package raster::raster : raster::plot . For each raster layer in a raster brick one plot is produced. Arguments that are passed through the function call: main , axes , xlab , ylab , xlim , ylim , zlim , col , stretch ( NULL no strech) plot.type = "plotRGB" Uses the function raster::plotRGB from the raster::raster package. Only one image plot is produced as all layers in a brick a combined. This plot type is useful to see whether any signal is recorded by the camera. Arguments that are passed through the function call: main , axes , xlab , ylab , ext , interpolate , maxpixels , alpha , colNA , stretch plot.type = "contour" Uses the function contour plot function from the raster function ( raster::contour ). For each raster layer one contour plot is produced. Arguments that are passed through the function call: main , axes , xlab , ylab , xlim , ylim , col 0.1.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum.Data.Image(): Plot function for an RLum.Data.Image S4 class object. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
112 plot_RLum.Data.Spectrum Plot function for an RLum.Data.Spectrum S4 class object The function provides a standardised plot output for spectrum data of an RLum.Data.Spectrum class object. The purpose of this function is to provide easy and straight-forward spectra plotting, not provide a full customised access to all plot parameters. If this is wanted, standard R plot functionality should be used instead. Matrix structure (cf. RLum.Data.Spectrum ) rows (x-values): wavelengths/channels ( xlim , xlab ) columns (y-values): time/temperature ( ylim , ylab ) cells (z-values): count values ( zlim , zlab ) Note: This nomenclature is valid for all plot types of this function! Nomenclature for value limiting xlim : Limits values along the wavelength axis ylim : Limits values along the time/temperature axis zlim : Limits values along the count value axis Details on the plot functions Spectrum is visualised as 3D or 2D plot. Both plot types are based on internal R plot functions. plot.type = "persp" Arguments that will be passed to graphics::persp : shade : default is 0.4 phi : default is 15 theta : default is -30 expand : default is 1 ticktype : default is detailed , r : default is 10 Note: Further parameters can be adjusted via par . For example to set the background transparent and reduce the thickness of the lines use: par(bg = NA, lwd = 0.7) previous the function call. plot.type = "single" Per frame a single curve is returned. Frames are time or temperature steps. plot.type = "multiple.lines" All frames plotted in one frame. '** plot.type = "image" or `plot.type = "contour" ** These plot types use the R functions graphics::image or graphics::contour . The advantage is that many plots can be arranged conveniently using standard R plot functionality. If plot.type = "image" a contour is added by default, which can be disabled using the argument contour = FALSE to add own contour lines of choice. plot.type = "transect" Depending on the selected wavelength/channel range a transect over the time/temperature (y-axis) will be plotted along the wavelength/channels (x-axis). If the range contains more than one channel, values (z-values) are summed up. To select a transect use the xlim argument, e.g. xlim = c(300,310) plot along the summed up count values of channel 300 to 310. Further arguments that will be passed (depending on the plot type) xlab , ylab , zlab , xlim , ylim , zlim , main , mtext , pch , type ( "single" , "multiple.lines" , "interactive" ), col , border , box lwd , bty , showscale ( "interactive" , "image" ) contour , contour.col ( "image" ) 0.6.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum.Data.Spectrum(): Plot function for an RLum.Data.Spectrum S4 class object. Function version 0.6.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
113 plot_RLum General plot function for RLum S4 class objects Function calls object specific plot functions for RLum S4 class objects. 0.4.4 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum(): General plot function for RLum S4 class objects. Function version 0.4.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
114 plot_RLum.Results Plot function for an RLum.Results S4 class object The function provides a standardised plot output for data of an RLum.Results S4 class object 0.2.1 Christoph Burow, University of Cologne (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Burow, C., Kreutzer, S., 2021. plot_RLum.Results(): Plot function for an RLum.Results S4 class object. Function version 0.2.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
115 plot_ROI Create Regions of Interest (ROI) Graphic Create ROI graphic with data extracted from the data imported via read_RF2R . This function is used internally by analyse_IRSAR.RF but might be of use to work with reduced data from spatially resolved measurements. The plot dimensions mimic the original image dimensions 0.1.0 Sebastian Kreutzer, Department of Geography & Earth Sciences, Aberystwyth University
(United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_ROI(): Create Regions of Interest (ROI) Graphic. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
116 plot_ViolinPlot Create a violin plot Draws a kernel density plot in combination with a boxplot in its middle. The shape of the violin is constructed using a mirrored density curve. This plot is especially designed for cases where the individual errors are zero or to small to be visualised. The idea for this plot is based on the the 'volcano plot' in the ggplot2 package by Hadley Wickham and Winston Chang. The general idea for the violin plot seems to be introduced by Hintze and Nelson (1998). The function is passing several arguments to the function plot , stats::density , graphics::boxplot : Supported arguments are: xlim , main , xlab , ylab , col.violin , col.boxplot , mtext , cex , mtext Valid summary keywords 'n' , 'mean' , 'median' , 'sd.abs' , 'sd.rel' , 'se.abs' , 'se.rel' . 'skewness' , 'kurtosis' 0.1.4 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_ViolinPlot(): Create a violin plot. Function version 0.1.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
117 PSL2Risoe.BINfileData Convert portable OSL data to an Risoe.BINfileData object Converts an RLum.Analysis object produced by the function read_PSL2R() to an Risoe.BINfileData object (BETA) . 0.0.1 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. PSL2Risoe.BINfileData(): Convert portable OSL data to an Risoe.BINfileData object. Function version 0.0.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
118 read_BIN2R Import Risø BIN/BINX-files into R Import a *.bin or a *.binx file produced by a Risø DA15 and DA20 TL/OSL reader into R. 0.16.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Margret C. Fuchs, HZDR Freiberg, (Germany)
based on information provided by Torben Lapp and Karsten Bracht Nielsen (Risø DTU, Denmark)
, RLum Developer Team
Kreutzer, S., Fuchs, M.C., 2021. read_BIN2R(): Import Risø BIN/BINX-files into R. Function version 0.16.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
119 read_Daybreak2R Import measurement data produced by a Daybreak TL/OSL reader into R Import a TXT-file (ASCII file) or a DAT-file (binary file) produced by a Daybreak reader into R. The import of the DAT-files is limited to the file format described for the software TLAPLLIC v.3.2 used for a Daybreak, model 1100. 0.3.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Antoine Zink, C2RMF, Palais du Louvre, Paris (France)

The ASCII-file import is based on a suggestion by Willian Amidon and Andrew Louis Gorin
, RLum Developer Team
Kreutzer, S., Zink, A., 2021. read_Daybreak2R(): Import measurement data produced by a Daybreak TL/OSL reader into R. Function version 0.3.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
120 read_PSL2R Import PSL files to R Imports PSL files produced by a SUERC portable OSL reader into R (BETA) . 0.0.1 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. read_PSL2R(): Import PSL files to R. Function version 0.0.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
121 read_RF2R Import RF-files to R Import files produced by the IR-RF 'ImageJ' macro (#TODO ADD REFERENCE) into R and create a list of RLum.Analysis objects 0.1.0 Sebastian Kreutzer, Geography & Earth Science, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. read_RF2R(): Import RF-files to R. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
122 read_SPE2R Import Princeton Instruments (TM) SPE-file into R Function imports Princeton Instruments (TM) SPE-files into R environment and provides RLum.Data.Image objects as output. 0.1.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. read_SPE2R(): Import Princeton Instruments (TM) SPE-file into R. Function version 0.1.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
123 read_TIFF2R Import TIFF Image Data into R Simple wrapper around [tiff::readTIFF] to import TIFF images and TIFF image stacks to be further processed within the package 'Luminescence' 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. read_TIFF2R(): Import TIFF Image Data into R. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
124 read_XSYG2R Import XSYG files to R Imports XSYG-files produced by a Freiberg Instruments lexsyg reader into R. 0.6.8 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. read_XSYG2R(): Import XSYG files to R. Function version 0.6.8. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
125 replicate_RLum General replication function for RLum S4 class objects Function replicates RLum S4 class objects and returns a list for this objects 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. replicate_RLum(): General replication function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
126 report_RLum Create a HTML-report for (RLum) objects Create a HTML-report for (RLum) objects 0.1.4 Christoph Burow, University of Cologne (Germany),
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Burow, C., Kreutzer, S., 2021. report_RLum(): Create a HTML-report for (RLum) objects. Function version 0.1.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
127 Risoe.BINfileData-class Class "Risoe.BINfileData" S4 class object for luminescence data in R. The object is produced as output of the function read_BIN2R . 0.4.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
based on information provided by Torben Lapp and Karsten Bracht Nielsen (Risø DTU, Denmark)
, RLum Developer Team
Kreutzer, S., 2021. Risoe.BINfileData-class(): Class 'Risoe.BINfileData'. Function version 0.4.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
128 Risoe.BINfileData2RLum.Analysis Convert Risoe.BINfileData object to an RLum.Analysis object Converts values from one specific position of a Risoe.BINfileData S4-class object to an RLum.Analysis object. 0.4.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. Risoe.BINfileData2RLum.Analysis(): Convert Risoe.BINfileData object to an RLum.Analysis object. Function version 0.4.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
129 RLum-class Class "RLum" Abstract class for data in the package Luminescence Subclasses are: Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum-class(): Class 'RLum'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
130 RLum.Analysis-class Class "RLum.Analysis" Object class to represent analysis data for protocol analysis, i.e. all curves, spectra etc. from one measurements. Objects from this class are produced, by e.g. read_XSYG2R , read_Daybreak2R Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Analysis-class(): Class 'RLum.Analysis'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
131 RLum.Data-class Class "RLum.Data" Generalized virtual data class for luminescence data. Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
132 RLum.Data.Curve-class Class "RLum.Data.Curve" Class for representing luminescence curve data. Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS - Université Bordeaux Montaigne (France)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Data.Curve-class(): Class 'RLum.Data.Curve'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
133 RLum.Data.Image-class Class "RLum.Data.Image" Class for representing luminescence image data (TL/OSL/RF). Such data are for example produced by the function read_SPE2R Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Data.Image-class(): Class 'RLum.Data.Image'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
134 RLum.Data.Spectrum-class Class "RLum.Data.Spectrum" Class for representing luminescence spectra data (TL/OSL/RF). Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Data.Spectrum-class(): Class 'RLum.Data.Spectrum'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
135 RLum.Results-class Class "RLum.Results" Object class contains results data from functions (e.g., analyse_SAR.CWOSL ). Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Results-class(): Class 'RLum.Results'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
136 scale_GammaDose Calculate the gamma dose deposited within a sample taking layer-to-layer
variations in radioactivity into account (according to Aitken, 1985)
This function calculates the gamma dose deposited in a luminescence sample taking into account layer-to-layer variations in sediment radioactivity . The function scales user inputs of uranium, thorium and potassium based on input parameters for sediment density, water content and given layer thicknesses and distances to the sample. 0.1.2 Svenja Riedesel, Aberystwyth University (United Kingdom)
Martin Autzen, DTU NUTECH Center for Nuclear Technologies (Denmark)
Christoph Burow, University of Cologne (Germany)
Based on an excel spreadsheet and accompanying macro written by Ian Bailiff.
, RLum Developer Team
Riedesel, S., Autzen, M., Burow, C., 2021. scale_GammaDose(): Calculate the gamma dose deposited within a sample taking layer-to-layer variations in radioactivity into account (according to Aitken, 1985). Function version 0.1.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
137 Second2Gray Converting equivalent dose values from seconds (s) to Gray (Gy) Conversion of absorbed radiation dose in seconds (s) to the SI unit Gray (Gy) including error propagation. Normally used for equivalent dose data. 0.6.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
Margret C. Fuchs, HZDR, Helmholtz-Institute Freiberg for Resource Technology (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., Fuchs, M.C., 2021. Second2Gray(): Converting equivalent dose values from seconds (s) to Gray (Gy). Function version 0.6.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
138 set_Risoe.BINfileData General accessor function for RLum S4 class objects Function calls object-specific get functions for RisoeBINfileData S4 class objects. 0.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. set_Risoe.BINfileData(): General accessor function for RLum S4 class objects. Function version 0.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
139 set_RLum General set function for RLum S4 class objects Function calls object-specific set functions for RLum S4 class objects. 0.3.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. set_RLum(): General set function for RLum S4 class objects. Function version 0.3.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
140 smooth_RLum Smoothing of data Function calls the object-specific smooth functions for provided RLum S4-class objects. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. smooth_RLum(): Smoothing of data. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
141 sTeve sTeve - sophisticated tool for efficient data validation and evaluation This function provides a sophisticated routine for comprehensive luminescence dating data analysis. R Luminescence Team, 2012-2046
, RLum Developer Team
NA, NA, , , 2021. sTeve(): sTeve - sophisticated tool for efficient data validation and evaluation. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
142 structure_RLum General structure function for RLum S4 class objects Function calls object-specific get functions for RLum S4 class objects. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. structure_RLum(): General structure function for RLum S4 class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
143 template_DRAC Create a DRAC input data template (v1.2) This function returns a DRAC input template (v1.2) to be used in conjunction with the use_DRAC function Christoph Burow, University of Cologne (Germany), Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Burow, C., Kreutzer, S., 2021. template_DRAC(): Create a DRAC input data template (v1.2). In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
144 tune_Data Tune data for experimental purpose The error can be reduced and sample size increased for specific purpose. 0.5.0 Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Dietze, M., 2021. tune_Data(): Tune data for experimental purpose. Function version 0.5.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
145 use_DRAC Use DRAC to calculate dose rate data The function provides an interface from R to DRAC. An R-object or a pre-formatted XLS/XLSX file is passed to the DRAC website and the results are re-imported into R. 0.1.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., Burow, C., 2021. use_DRAC(): Use DRAC to calculate dose rate data. Function version 0.1.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
146 verify_SingleGrainData Verify single grain data sets and check for invalid grains, i.e.
zero-light level grains
This function tries to identify automatically zero-light level curves (grains) from single grain data measurements. 0.2.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. verify_SingleGrainData(): Verify single grain data sets and check for invalid grains, i.e. zero-light level grains. Function version 0.2.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
147 write_R2BIN Export Risoe.BINfileData into Risø BIN/BINX-file Exports a Risoe.BINfileData object in a *.bin or *.binx file that can be opened by the Analyst software or other Risø software. 0.5.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. write_R2BIN(): Export Risoe.BINfileData into Risø BIN/BINX-file. Function version 0.5.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
148 write_RLum2CSV Export RLum-objects to CSV This function exports RLum -objects to CSV-files using the R function utils::write.table . All RLum -objects are supported, but the export is lossy, i.e. the pure numerical values are exported only. Information that cannot be coerced to a data.frame or a matrix are discarded as well as metadata. 0.2.0 Sebastian Kreutzer, Geography & Earth Science, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. write_RLum2CSV(): Export RLum-objects to CSV. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence

Major functions in the R package 'Luminescence'

[version: 0.9.14 ]

  Name Title Description Version m.Date m.Time Author Citation
1 analyse_Al2O3C_CrossTalk Al2O3:C Reader Cross Talk Analysis The function provides the analysis of cross-talk measurements on a FI lexsyg SMART reader using Al2O3:C chips 0.1.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_Al2O3C_CrossTalk(): Al2O3:C Reader Cross Talk Analysis. Function version 0.1.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
2 analyse_Al2O3C_ITC Al2O3 Irradiation Time Correction Analysis The function provides a very particular analysis to correct the irradiation time while irradiating Al2O3:C chips in a luminescence reader. 0.1.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_Al2O3C_ITC(): Al2O3 Irradiation Time Correction Analysis. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
3 analyse_Al2O3C_Measurement Al2O3:C Passive Dosimeter Measurement Analysis The function provides the analysis routines for measurements on a FI lexsyg SMART reader using Al2O3:C chips according to Kreutzer et al., 2018 0.2.5 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_Al2O3C_Measurement(): Al2O3:C Passive Dosimeter Measurement Analysis. Function version 0.2.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
4 analyse_baSAR Bayesian models (baSAR) applied on luminescence data This function allows the application of Bayesian models on luminescence data, measured with the single-aliquot regenerative-dose (SAR, Murray and Wintle, 2000) protocol. In particular, it follows the idea proposed by Combès et al., 2015 of using an hierarchical model for estimating a central equivalent dose from a set of luminescence measurements. This function is (I) the adoption of this approach for the R environment and (II) an extension and a technical refinement of the published code. 0.1.33 Norbert Mercier, IRAMAT-CRP2A, Université Bordeaux Montaigne (France)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
The underlying Bayesian model based on a contribution by Combès et al., 2015.
, RLum Developer Team
Mercier, N., Kreutzer, S., 2021. analyse_baSAR(): Bayesian models (baSAR) applied on luminescence data. Function version 0.1.33. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
5 analyse_FadingMeasurement Analyse fading measurements and returns the fading rate per decade (g-value) The function analysis fading measurements and returns a fading rate including an error estimation. The function is not limited to standard fading measurements, as can be seen, e.g., Huntley and Lamothe (2001). Additionally, the density of recombination centres (rho') is estimated after Kars et al. (2008). 0.1.19 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Kreutzer, S., Burow, C., 2021. analyse_FadingMeasurement(): Analyse fading measurements and returns the fading rate per decade (g-value). Function version 0.1.19. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
6 analyse_IRSAR.RF Analyse IRSAR RF measurements Function to analyse IRSAR RF measurements on K-feldspar samples, performed using the protocol according to Erfurt et al. (2003) and beyond. 0.7.8 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_IRSAR.RF(): Analyse IRSAR RF measurements. Function version 0.7.8. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
7 analyse_pIRIRSequence Analyse post-IR IRSL measurement sequences The function performs an analysis of post-IR IRSL sequences including curve fitting on RLum.Analysis objects. 0.2.4 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_pIRIRSequence(): Analyse post-IR IRSL measurement sequences. Function version 0.2.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
8 analyse_portableOSL Analyse portable CW-OSL measurements The function analyses CW-OSL curve data produced by a SUERC portable OSL reader and produces a combined plot of OSL/IRSL signal intensities, OSL/IRSL depletion ratios and the IRSL/OSL ratio. 0.0.3 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. analyse_portableOSL(): Analyse portable CW-OSL measurements. Function version 0.0.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
9 analyse_SAR.CWOSL Analyse SAR CW-OSL measurements The function performs a SAR CW-OSL analysis on an RLum.Analysis object including growth curve fitting. 0.9.11 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University
(United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_SAR.CWOSL(): Analyse SAR CW-OSL measurements. Function version 0.9.11. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
10 Analyse_SAR.OSLdata Analyse SAR CW-OSL measurements. The function analyses SAR CW-OSL curve data and provides a summary of the measured data for every position. The output of the function is optimised for SAR OSL measurements on quartz. 0.2.17 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Margret C. Fuchs, HZDR, Freiberg (Germany)
, RLum Developer Team
Kreutzer, S., Fuchs, M.C., 2021. Analyse_SAR.OSLdata(): Analyse SAR CW-OSL measurements.. Function version 0.2.17. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
11 analyse_SAR.TL Analyse SAR TL measurements The function performs a SAR TL analysis on a RLum.Analysis object including growth curve fitting. 0.3.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. analyse_SAR.TL(): Analyse SAR TL measurements. Function version 0.3.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
12 app_RLum Run Luminescence shiny apps (wrapper) Wrapper for the function RLumShiny::app_RLum from the package RLumShiny::RLumShiny-package . For further details and examples please see the manual of this package. 0.1.1 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. app_RLum(): Run Luminescence shiny apps (wrapper). Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
13 apply_CosmicRayRemoval Function to remove cosmic rays from an RLum.Data.Spectrum S4 class object The function provides several methods for cosmic-ray removal and spectrum smoothing RLum.Data.Spectrum objects and such objects embedded in list or RLum.Analysis objects. 0.3.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. apply_CosmicRayRemoval(): Function to remove cosmic rays from an RLum.Data.Spectrum S4 class object. Function version 0.3.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
14 apply_EfficiencyCorrection Function to apply spectral efficiency correction to RLum.Data.Spectrum S4
class objects
The function allows spectral efficiency corrections for RLum.Data.Spectrum S4 class objects 0.2.0 Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS-Université Bordeaux Montaigne (France)
Johannes Friedrich, University of Bayreuth (Germany)
, RLum Developer Team
Kreutzer, S., Friedrich, J., 2021. apply_EfficiencyCorrection(): Function to apply spectral efficiency correction to RLum.Data.Spectrum S4 class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
15 as as() - RLum-object coercion for [RLum.Analysis-class] for [RLum.Data.Curve-class] for [RLum.Data.Image-class] for [RLum.Data.Spectrum-class] for [RLum.Results-class]
16 BaseDataSet.ConversionFactors Base data set of dose-rate conversion factors Collection of published dose-rate conversion factors to convert concentrations of radioactive isotopes to dose rate values.
17 BaseDataSet.CosmicDoseRate Base data set for cosmic dose rate calculation Collection of data from various sources needed for cosmic dose rate calculation
18 BaseDataSet.FractionalGammaDose Base data set of fractional gamma-dose values Collection of (un-)published fractional gamma dose-rate values to scale the gamma-dose rate considering layer-to-layer variations in soil radioactivity.
19 BaseDataSet.GrainSizeAttenuation Base dataset for grain size attenuation data by Guérin et al. (2012) Grain size correction data for beta-dose rates published by Guérin et al. (2012). #' @format A data.frame seven columns and sixteen rows. Column headers are GrainSize , Q_K , FS_K , Q_Th , FS_Th , Q_U , FS_U . Grain sizes are quoted in µm (e.g., 20, 40, 60 etc.)
20 bin_RLum.Data Channel binning - method dispatcher Function calls the object-specific bin functions for RLum.Data S4 class objects. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. bin_RLum.Data(): Channel binning - method dispatcher. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
21 calc_AliquotSize Estimate the amount of grains on an aliquot Estimate the number of grains on an aliquot. Alternatively, the packing density of an aliquot is computed. 0.31 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. calc_AliquotSize(): Estimate the amount of grains on an aliquot. Function version 0.31. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
22 calc_AverageDose Calculate the Average Dose and the dose rate dispersion This functions calculates the Average Dose and their extrinsic dispersion and estimates the standard errors by bootstrapping based on the Average Dose Model by Guerin et al., 2017 0.1.4 Claire Christophe, IRAMAT-CRP2A, Université de Nantes (France),
Anne Philippe, Université de Nantes, (France),
Guillaume Guérin, IRAMAT-CRP2A, Université Bordeaux Montaigne, (France),
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Christophe, C., Philippe, A., Kreutzer, S., 2021. calc_AverageDose(): Calculate the Average Dose and the dose rate dispersion. Function version 0.1.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
23 calc_CentralDose Apply the central age model (CAM) after Galbraith et al. (1999) to a given
De distribution
This function calculates the central dose and dispersion of the De distribution, their standard errors and the profile log likelihood function for sigma. 1.4.0 Christoph Burow, University of Cologne (Germany)
Based on a rewritten S script of Rex Galbraith, 2010
, RLum Developer Team
Burow, C., 2021. calc_CentralDose(): Apply the central age model (CAM) after Galbraith et al. (1999) to a given De distribution. Function version 1.4.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
24 calc_CobbleDoseRate Calculate dose rate of slices in a spherical cobble Calculates the dose rate profile through the cobble based on Riedesel and Autzen (2020). Corrects the beta dose rate in the cobble for the grain size following results of Guérin et al. (2012). Sediment beta and gamma dose rates are corrected for the water content of the sediment using the correction factors of Aitken (1985). Water content in the cobble is assumed to be 0. 0.1.0 Svenja Riedesel, Aberystwyth University (United Kingdom)
Martin Autzen, DTU NUTECH Center for Nuclear Technologies (Denmark)
, RLum Developer Team
Riedesel, S., Autzen, M., 2021. calc_CobbleDoseRate(): Calculate dose rate of slices in a spherical cobble. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
25 calc_CommonDose Apply the (un-)logged common age model after Galbraith et al. (1999) to a
given De distribution
Function to calculate the common dose of a De distribution. 0.1.1 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. calc_CommonDose(): Apply the (un-)logged common age model after Galbraith et al. (1999) to a given De distribution. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
26 calc_CosmicDoseRate Calculate the cosmic dose rate This function calculates the cosmic dose rate taking into account the soft- and hard-component of the cosmic ray flux and allows corrections for geomagnetic latitude, altitude above sea-level and geomagnetic field changes. 0.5.2 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. calc_CosmicDoseRate(): Calculate the cosmic dose rate. Function version 0.5.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
27 calc_FadingCorr Apply a fading correction according to Huntley & Lamothe (2001) for a given
g-value and a given tc
This function solves the equation used for correcting the fading affected age including the error for a given g-value according to Huntley & Lamothe (2001). 0.4.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. calc_FadingCorr(): Apply a fading correction according to Huntley & Lamothe (2001) for a given g-value and a given tc. Function version 0.4.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
28 calc_FastRatio Calculate the Fast Ratio for CW-OSL curves Function to calculate the fast ratio of quartz CW-OSL single grain or single aliquot curves after Durcan & Duller (2011). 0.1.1 Georgina E. King, University of Bern (Switzerland)
Julie A. Durcan, University of Oxford (United Kingdom)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
King, G.E., Durcan, J., Burow, C., 2021. calc_FastRatio(): Calculate the Fast Ratio for CW-OSL curves. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
29 calc_FiniteMixture Apply the finite mixture model (FMM) after Galbraith (2005) to a given De
distribution
This function fits a k-component mixture to a De distribution with differing known standard errors. Parameters (doses and mixing proportions) are estimated by maximum likelihood assuming that the log dose estimates are from a mixture of normal distributions. 0.4.2 Christoph Burow, University of Cologne (Germany)
Based on a rewritten S script of Rex Galbraith, 2006.
, RLum Developer Team
Burow, C., 2021. calc_FiniteMixture(): Apply the finite mixture model (FMM) after Galbraith (2005) to a given De distribution. Function version 0.4.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
30 calc_FuchsLang2001 Apply the model after Fuchs & Lang (2001) to a given De distribution. This function applies the method according to Fuchs & Lang (2001) for heterogeneously bleached samples with a given coefficient of variation threshold. 0.4.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Kreutzer, S., Burow, C., 2021. calc_FuchsLang2001(): Apply the model after Fuchs & Lang (2001) to a given De distribution.. Function version 0.4.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
31 calc_gSGC_feldspar Calculate Global Standardised Growth Curve (gSGC) for Feldspar MET-pIRIR Implementation of the gSGC approach for feldspar MET-pIRIR by Li et al. (2015) 0.1.0 Harrison Gray, USGS (United States),
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Gray, H.J., Kreutzer, S., 2021. calc_gSGC_feldspar(): Calculate Global Standardised Growth Curve (gSGC) for Feldspar MET-pIRIR. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
32 calc_gSGC Calculate De value based on the gSGC by Li et al., 2015 Function returns De value and De value error using the global standardised growth curve (gSGC) assumption proposed by Li et al., 2015 for OSL dating of sedimentary quartz 0.1.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. calc_gSGC(): Calculate De value based on the gSGC by Li et al., 2015. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
33 calc_HomogeneityTest Apply a simple homogeneity test after Galbraith (2003) A simple homogeneity test for De estimates 0.3.0 Christoph Burow, University of Cologne (Germany), Sebastian Kreutzer,
IRAMAT-CRP2A, Université Bordeaux Montaigne (France)
, RLum Developer Team
Burow, C., Kreutzer, S., 2021. calc_HomogeneityTest(): Apply a simple homogeneity test after Galbraith (2003). Function version 0.3.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
34 calc_Huntley2006 Apply the Huntley (2006) model A function to calculate the expected sample specific fraction of saturation based on the model of Huntley (2006) using the approach as implemented in Kars et al. (2008) or Guralnik et al. (2015). 0.4.1 Georgina E. King, University of Bern (Switzerland)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
King, G.E., Burow, C., 2021. calc_Huntley2006(): Apply the Huntley (2006) model. Function version 0.4.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
35 calc_IEU Apply the internal-external-uncertainty (IEU) model after Thomsen et al.
(2007) to a given De distribution
Function to calculate the IEU De for a De data set. 0.1.1 Rachel Smedley, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Based on an excel spreadsheet and accompanying macro written by Kristina Thomsen.
, RLum Developer Team
Smedley, R.K., 2021. calc_IEU(): Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
36 calc_Kars2008 Apply the Kars et al. (2008) model (deprecated) A function to calculate the expected sample specific fraction of saturation following Kars et al. (2008) and Huntley (2006). This function is deprecated and will eventually be removed. Please use calc_Huntley2006() instead. 0.4.0 Georgina E. King, University of Bern (Switzerland)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
King, G.E., Burow, C., 2021. calc_Kars2008(): Apply the Kars et al. (2008) model (deprecated). Function version 0.4.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
37 calc_Lamothe2003 Apply fading correction after Lamothe et al., 2003 This function applies the fading correction for the prediction of long-term fading as suggested by Lamothe et al., 2003. The function basically adjusts the Ln/Tn values and fit a new dose-response curve using the function plot_GrowthCurve . 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom), Norbert Mercier,
IRAMAT-CRP2A, Université Bordeaux Montaigne (France)
, RLum Developer Team
Kreutzer, S., Mercier, N., 2021. calc_Lamothe2003(): Apply fading correction after Lamothe et al., 2003. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
38 calc_MaxDose Apply the maximum age model to a given De distribution Function to fit the maximum age model to De data. This is a wrapper function that calls calc_MinDose and applies a similar approach as described in Olley et al. (2006). 0.3.1 Christoph Burow, University of Cologne (Germany)
Based on a rewritten S script of Rex Galbraith, 2010
, RLum Developer Team
Burow, C., 2021. calc_MaxDose(): Apply the maximum age model to a given De distribution. Function version 0.3.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
39 calc_MinDose Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999)
to a given De distribution
Function to fit the (un-)logged three or four parameter minimum dose model (MAM-3/4) to De data. 0.4.4 Christoph Burow, University of Cologne (Germany)
Based on a rewritten S script of Rex Galbraith, 2010
The bootstrap approach is based on a rewritten MATLAB script of Alastair Cunningham.
Alastair Cunningham is thanked for his help in implementing and cross-checking the code.
, RLum Developer Team
Burow, C., 2021. calc_MinDose(): Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) to a given De distribution. Function version 0.4.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
40 calc_OSLLxTxDecomposed Calculate Lx/Tx ratio for decomposed CW-OSL signal components Calculate Lx/Tx ratios from a given set of decomposed CW-OSL curves decomposed by [OSLdecomposition::RLum.OSL_decomposition] 0.1.0 Dirk Mittelstrass
, RLum Developer Team
Mittelstrass, D., 2021. calc_OSLLxTxDecomposed(): Calculate Lx/Tx ratio for decomposed CW-OSL signal components. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
41 calc_OSLLxTxRatio Calculate Lx/Tx ratio for CW-OSL curves Calculate Lx/Tx ratios from a given set of CW-OSL curves assuming late light background subtraction. 0.8.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. calc_OSLLxTxRatio(): Calculate Lx/Tx ratio for CW-OSL curves. Function version 0.8.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
42 calc_SourceDoseRate Calculation of the source dose rate via the date of measurement Calculating the dose rate of the irradiation source via the date of measurement based on: source calibration date, source dose rate, dose rate error. The function returns a data.frame that provides the input argument dose_rate for the function Second2Gray . 0.3.2 Margret C. Fuchs, HZDR, Helmholtz-Institute Freiberg for Resource Technology (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Fuchs, M.C., Kreutzer, S., 2021. calc_SourceDoseRate(): Calculation of the source dose rate via the date of measurement. Function version 0.3.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
43 calc_Statistics Function to calculate statistic measures This function calculates a number of descriptive statistics for estimates with a given standard error (SE), most fundamentally using error-weighted approaches. 0.1.7 Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Dietze, M., 2021. calc_Statistics(): Function to calculate statistic measures. Function version 0.1.7. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
44 calc_ThermalLifetime Calculates the Thermal Lifetime using the Arrhenius equation The function calculates the thermal lifetime of charges for given E (in eV), s (in 1/s) and T (in deg. C.) parameters. The function can be used in two operational modes: 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. calc_ThermalLifetime(): Calculates the Thermal Lifetime using the Arrhenius equation. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
45 calc_TLLxTxRatio Calculate the Lx/Tx ratio for a given set of TL curves -beta version- Calculate Lx/Tx ratio for a given set of TL curves. 0.3.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Christoph Schmidt, University of Bayreuth (Germany)
, RLum Developer Team
Kreutzer, S., Schmidt, C., 2021. calc_TLLxTxRatio(): Calculate the Lx/Tx ratio for a given set of TL curves -beta version-. Function version 0.3.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
46 calc_WodaFuchs2008 Obtain the equivalent dose using the approach by Woda and Fuchs 2008 The function generates a histogram-like reorganisation of the data, to assess counts per bin. The log-transformed counts per bin are used to calculate the second derivative of the data (i.e., the curvature of the curve) and to find the central value of the bin hosting the distribution maximum. A normal distribution model is fitted to the counts per bin data to estimate the dose distribution parameters. The uncertainty of the model is estimated based on all input equivalent doses smaller that of the modelled central value. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom),
Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., 2021. calc_WodaFuchs2008(): Obtain the equivalent dose using the approach by Woda and Fuchs 2008. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
47 convert_Activity2Concentration Convert Nuclide Activities to Concentrations and Vice Versa The function performs the conversion of the specific activities into concentrations and vice versa for the nuclides U-238, Th-232 and K-40 to harmonise the measurement unit with the required data input unit of potential analytical tools for, e.g. dose rate calculation or related functions such as use_DRAC . 0.1.0 Margret C. Fuchs, Helmholtz-Institute Freiberg for Resource Technology (Germany)
, RLum Developer Team
Fuchs, M.C., 2021. convert_Activity2Concentration(): Convert Nuclide Activities to Concentrations and Vice Versa. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
48 convert_BIN2CSV Export Risoe BIN-file(s) to CSV-files This function is a wrapper function around the functions read_BIN2R and write_RLum2CSV and it imports a Risoe BIN-file and directly exports its content to CSV-files. If nothing is set for the argument path ( write_RLum2CSV ) the input folder will become the output folder. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_BIN2CSV(): Export Risoe BIN-file(s) to CSV-files. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
49 convert_Concentration2DoseRate Dose-rate conversion function This function converts radionuclide concentrations (K in %, Th and U in ppm) into dose rates (Gy/ka). Beta-dose rates are also attenuated for the grain size. Beta and gamma-dose rates are corrected for the water content. This function converts concentrations into dose rates (Gy/ka) and corrects for grain size attenuation and water content Dose rate conversion factors can be chosen from Adamiec and Aitken (1998), Guerin et al. (2011), Liritzis et al. (201) and Cresswell et al. (2018). Default is Guerin et al. (2011). Grain size correction for beta dose rates is achieved using the correction factors published by Guérin et al. (2012). Water content correction is based on factors provided by Aitken (1985), with the factor for beta dose rate being 1.25 and for gamma 1.14. 0.1.0 Svenja Riedesel, Aberystwyth University (United Kingdom)
Martin Autzen, DTU NUTECH Center for Nuclear Technologies (Denmark)
, RLum Developer Team
Riedesel, S., Autzen, M., 2021. convert_Concentration2DoseRate(): Dose-rate conversion function. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
50 convert_Daybreak2CSV Export measurement data produced by a Daybreak luminescence reader to CSV-files This function is a wrapper function around the functions read_Daybreak2R and write_RLum2CSV and it imports an Daybreak-file (TXT-file, DAT-file) and directly exports its content to CSV-files. If nothing is set for the argument path ( write_RLum2CSV ) the input folder will become the output folder. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_Daybreak2CSV(): Export measurement data produced by a Daybreak luminescence reader to CSV-files. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
51 convert_PSL2CSV Export PSL-file(s) to CSV-files This function is a wrapper function around the functions read_PSL2R and write_RLum2CSV and it imports an PSL-file (SUERC portable OSL reader file format) and directly exports its content to CSV-files. If nothing is set for the argument path ( write_RLum2CSV ) the input folder will become the output folder. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_PSL2CSV(): Export PSL-file(s) to CSV-files. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
52 convert_RLum2Risoe.BINfileData Converts RLum.Analysis-objects and RLum.Data.Curve-objects to RLum2Risoe.BINfileData-objects The functions converts RLum.Analysis and RLum.Data.Curve objects and a list of those to Risoe.BINfileData objects. The function intends to provide a minimum of compatibility between both formats. The created RLum.Analysis object can be later exported to a BIN-file using the function write_R2BIN . 0.1.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_RLum2Risoe.BINfileData(): Converts RLum.Analysis-objects and RLum.Data.Curve-objects to RLum2Risoe.BINfileData-objects. Function version 0.1.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
53 convert_SG2MG Converts Single-Grain Data to Multiple-Grain Data Conversion of single-grain data to multiple-grain data by adding signals from grains belonging to one disc (unique pairs of position, set and run). 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom), Norbert Mercier, IRAMAT-CRP2A, UMR 5060, CNRS-Université Bordeaux Montaigne (France);
, RLum Developer Team
Kreutzer, S., Mercier, N., 2021. convert_SG2MG(): Converts Single-Grain Data to Multiple-Grain Data. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
54 convert_Wavelength2Energy Emission Spectra Conversion from Wavelength to Energy Scales The function provides a convenient and fast way to convert emission spectra wavelength to energy scales. The function works on RLum.Data.Spectrum , data.frame and matrix and a list of such objects. The function was written to smooth the workflow while analysing emission spectra data. This is in particular useful if you want to further treat your data and apply, e.g., a signal deconvolution. 0.1.1 Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS - Université Bordeaux Montaigne (France)
, RLum Developer Team
Kreutzer, S., 2021. convert_Wavelength2Energy(): Emission Spectra Conversion from Wavelength to Energy Scales. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
55 convert_XSYG2CSV Export XSYG-file(s) to CSV-files This function is a wrapper function around the functions read_XSYG2R and write_RLum2CSV and it imports an XSYG-file and directly exports its content to CSV-files. If nothing is set for the argument path ( write_RLum2CSV ) the input folder will become the output folder. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. convert_XSYG2CSV(): Export XSYG-file(s) to CSV-files. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
56 CW2pHMi Transform a CW-OSL curve into a pHM-OSL curve via interpolation under
hyperbolic modulation conditions
This function transforms a conventionally measured continuous-wave (CW) OSL-curve to a pseudo hyperbolic modulated (pHM) curve under hyperbolic modulation conditions using the interpolation procedure described by Bos & Wallinga (2012). 0.2.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Based on comments and suggestions from:
Adrie J.J. Bos, Delft University of Technology, The Netherlands
, RLum Developer Team
Kreutzer, S., 2021. CW2pHMi(): Transform a CW-OSL curve into a pHM-OSL curve via interpolation under hyperbolic modulation conditions. Function version 0.2.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
57 CW2pLM Transform a CW-OSL curve into a pLM-OSL curve Transforms a conventionally measured continuous-wave (CW) curve into a pseudo linearly modulated (pLM) curve using the equations given in Bulur (2000). 0.4.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. CW2pLM(): Transform a CW-OSL curve into a pLM-OSL curve. Function version 0.4.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
58 CW2pLMi Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear
modulation conditions
Transforms a conventionally measured continuous-wave (CW) OSL-curve into a pseudo linearly modulated (pLM) curve under linear modulation conditions using the interpolation procedure described by Bos & Wallinga (2012). 0.3.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)

Based on comments and suggestions from:
Adrie J.J. Bos, Delft University of Technology, The Netherlands
, RLum Developer Team
Kreutzer, S., 2021. CW2pLMi(): Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear modulation conditions. Function version 0.3.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
59 CW2pPMi Transform a CW-OSL curve into a pPM-OSL curve via interpolation under
parabolic modulation conditions
Transforms a conventionally measured continuous-wave (CW) OSL-curve into a pseudo parabolic modulated (pPM) curve under parabolic modulation conditions using the interpolation procedure described by Bos & Wallinga (2012). 0.2.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)

Based on comments and suggestions from:
Adrie J.J. Bos, Delft University of Technology, The Netherlands
, RLum Developer Team
Kreutzer, S., 2021. CW2pPMi(): Transform a CW-OSL curve into a pPM-OSL curve via interpolation under parabolic modulation conditions. Function version 0.2.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
60 ExampleData.Al2O3C Example Al2O3:C Measurement Data Measurement data obtained from measuring Al2O3:C chips at the IRAMAT-CRP2A, Université Bordeaux Montaigne in 2017 on a Freiberg Instruments lexsyg SMART reader. The example data used in particular to allow test of the functions developed in framework of the work by Kreutzer et al., 2018.
61 ExampleData.BINfileData Example data from a SAR OSL and SAR TL measurement for the package
Luminescence
Example data from a SAR OSL and TL measurement for package Luminescence directly extracted from a Risoe BIN-file and provided in an object of type Risoe.BINfileData
62 ExampleData.CobbleData Example data for calc_CobbleDoseRate() An example data set for the function calc_CobbleDoseRate containing layer specific information for the cobble to be used in the function.
63 ExampleData.CW_OSL_Curve Example CW-OSL curve data for the package Luminescence data.frame containing CW-OSL curve data (time, counts)
64 ExampleData.DeValues Example De data sets for the package Luminescence Equivalent dose (De) values measured for a fine grain quartz sample from a loess section in Rottewitz (Saxony/Germany) and for a coarse grain quartz sample from a fluvial deposit in the rock shelter of Cueva Anton (Murcia/Spain).
65 ExampleData.Fading Example data for feldspar fading measurements Example data set for fading measurements of the IR50, IR100, IR150 and IR225 feldspar signals of sample UNIL/NB123. It further contains regular equivalent dose measurement data of the same sample, which can be used to apply a fading correction to.
66 ExampleData.FittingLM Example data for fit_LMCurve() in the package Luminescence Linearly modulated (LM) measurement data from a quartz sample from Norway including background measurement. Measurements carried out in the luminescence laboratory at the University of Bayreuth.
67 ExampleData.LxTxData Example Lx/Tx data from CW-OSL SAR measurement LxTx data from a SAR measurement for the package Luminescence.
68 ExampleData.LxTxOSLData Example Lx and Tx curve data from an artificial OSL measurement Lx and Tx data of continuous wave (CW-) OSL signal curves.
69 ExampleData.portableOSL Example portable OSL curve data for the package Luminescence A list of RLum.Analysis objects, each containing the same number of RLum.Data.Curve objects representing individual OSL, IRSL and dark count measurements of a sample.
70 ExampleData.RLum.Analysis Example data as RLum.Analysis objects Collection of different RLum.Analysis objects for protocol analysis.
71 ExampleData.RLum.Data.Image Example data as RLum.Data.Image objects Measurement of Princton Instruments camera imported with the function read_SPE2R to R to produce an RLum.Data.Image object.
72 ExampleData.ScaleGammaDose Example data for scale_GammaDose() An example data set for the function scale_GammaDose() containing layer specific information to scale the gamma dose rate considering variations in soil radioactivity.
73 ExampleData.SurfaceExposure Example OSL surface exposure dating data A set of synthetic OSL surface exposure dating data to demonstrate the fit_SurfaceExposure functionality. See examples to reproduce the data interactively.
74 ExampleData.TR_OSL Example TR-OSL data Single TR-OSL curve obtained by Schmidt et al. (under review) for quartz sample BT729 (origin: Trebgast Valley, Germany, quartz, 90-200 µm, unpublished data).
75 ExampleData.XSYG Example data for a SAR OSL measurement and a TL spectrum using a lexsyg
reader
Example data from a SAR OSL measurement and a TL spectrum for package Luminescence imported from a Freiberg Instruments XSYG file using the function read_XSYG2R .
76 extdata Collection of External Data Description and listing of data provided in the folder data/extdata
77 extract_IrradiationTimes Extract Irradiation Times from an XSYG-file Extracts irradiation times, dose and times since last irradiation, from a Freiberg Instruments XSYG-file. These information can be further used to update an existing BINX-file. 0.3.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. extract_IrradiationTimes(): Extract Irradiation Times from an XSYG-file. Function version 0.3.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
78 fit_CWCurve Nonlinear Least Squares Fit for CW-OSL curves -beta version- The function determines the weighted least-squares estimates of the component parameters of a CW-OSL signal for a given maximum number of components and returns various component parameters. The fitting procedure uses the nls function with the port algorithm. 0.5.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. fit_CWCurve(): Nonlinear Least Squares Fit for CW-OSL curves -beta version-. Function version 0.5.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
79 fit_LMCurve Nonlinear Least Squares Fit for LM-OSL curves The function determines weighted nonlinear least-squares estimates of the component parameters of an LM-OSL curve (Bulur 1996) for a given number of components and returns various component parameters. The fitting procedure uses the function nls with the port algorithm. 0.3.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. fit_LMCurve(): Nonlinear Least Squares Fit for LM-OSL curves. Function version 0.3.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
80 fit_OSLLifeTimes Fitting and Deconvolution of OSL Lifetime Components Fitting and Deconvolution of OSL Lifetime Components 0.1.5 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University,
Christoph Schmidt, University of Bayreuth (Germany)
, RLum Developer Team
Kreutzer, S., Schmidt, C., 2021. fit_OSLLifeTimes(): Fitting and Deconvolution of OSL Lifetime Components. Function version 0.1.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
81 fit_SurfaceExposure Nonlinear Least Squares Fit for OSL surface exposure data This function determines the (weighted) least-squares estimates of the parameters of either equation 1 in Sohbati et al. (2012a) or equation 12 in Sohbati et al. (2012b) for a given OSL surface exposure data set ( BETA ). 0.1.0 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. fit_SurfaceExposure(): Nonlinear Least Squares Fit for OSL surface exposure data. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
82 fit_ThermalQuenching Fitting Thermal Quenching Data Applying a nls-fitting to thermal quenching data. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. fit_ThermalQuenching(): Fitting Thermal Quenching Data. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
83 get_Layout Collection of layout definitions This helper function returns a list with layout definitions for homogeneous plotting. 0.1 Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Dietze, M., 2021. get_Layout(): Collection of layout definitions. Function version 0.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
84 get_Quote Function to return essential quotes This function returns one of the collected essential quotes in the growing library. If called without any parameters, a random quote is returned. 0.1.5 Michael Dietze, GFZ Potsdam (Germany), Sebastian Kreutzer, Geography & Earth Science, Aberystwyth University (United Kingdom), Dirk Mittelstraß, TU Dresden (Germany)
, RLum Developer Team
Dietze, M., Kreutzer, S., 2021. get_Quote(): Function to return essential quotes. Function version 0.1.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
85 get_rightAnswer Function to get the right answer This function returns just the right answer 0.1.0 inspired by R.G.
, RLum Developer Team
NA, NA, , , 2021. get_rightAnswer(): Function to get the right answer. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
86 get_Risoe.BINfileData General accessor function for RLum S4 class objects Function calls object-specific get functions for RisoeBINfileData S4 class objects. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. get_Risoe.BINfileData(): General accessor function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
87 get_RLum General accessors function for RLum S4 class objects Function calls object-specific get functions for RLum S4 class objects. 0.3.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. get_RLum(): General accessors function for RLum S4 class objects. Function version 0.3.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
88 GitHub-API GitHub API R Interface to the GitHub API v3. 0.1.0 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. GitHub-API(): GitHub API. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
89 install_DevelopmentVersion Attempts to install the development version of the 'Luminescence' package This function is a convenient method for installing the development version of the R package 'Luminescence' directly from GitHub.
90 length_RLum General accessor function for RLum S4 class objects Function calls object-specific get functions for RLum S4 class objects. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
(France)
, RLum Developer Team
Kreutzer, S., 2021. length_RLum(): General accessor function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
91 merge_Risoe.BINfileData Merge Risoe.BINfileData objects or Risoe BIN-files Function allows merging Risoe BIN/BINX files or Risoe.BINfileData objects. 0.2.7 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_Risoe.BINfileData(): Merge Risoe.BINfileData objects or Risoe BIN-files. Function version 0.2.7. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
92 merge_RLum.Analysis Merge function for RLum.Analysis S4 class objects Function allows merging of RLum.Analysis objects and adding of allowed objects to an RLum.Analysis. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_RLum.Analysis(): Merge function for RLum.Analysis S4 class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
93 merge_RLum.Data.Curve Merge function for RLum.Data.Curve S4 class objects Function allows merging of RLum.Data.Curve objects in different ways 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_RLum.Data.Curve(): Merge function for RLum.Data.Curve S4 class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
94 merge_RLum General merge function for RLum S4 class objects Function calls object-specific merge functions for RLum S4 class objects. 0.1.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_RLum(): General merge function for RLum S4 class objects. Function version 0.1.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
95 merge_RLum.Results Merge function for RLum.Results S4-class objects Function merges objects of class RLum.Results . The slots in the objects are combined depending on the object type, e.g., for data.frame and matrix rows are appended. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. merge_RLum.Results(): Merge function for RLum.Results S4-class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
96 methods_RLum methods_RLum Methods for S3-generics implemented for the package 'Luminescence'. This document summarises all implemented S3-generics. The name of the function is given before the first dot, after the dot the name of the object that is supported by this method is given, e.g. plot.RLum.Data.Curve can be called by plot(object, ...) , where object is the RLum.Data.Curve object.
97 names_RLum S4-names function for RLum S4 class objects Function calls object-specific names functions for RLum S4 class objects. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. names_RLum(): S4-names function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
98 plot_AbanicoPlot Function to create an Abanico Plot. A plot is produced which allows comprehensive presentation of data precision and its dispersion around a central value as well as illustration of a kernel density estimate, histogram and/or dot plot of the dose values. 0.1.15 Michael Dietze, GFZ Potsdam (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Inspired by a plot introduced by Galbraith & Green (1990)
, RLum Developer Team
Dietze, M., Kreutzer, S., 2021. plot_AbanicoPlot(): Function to create an Abanico Plot.. Function version 0.1.15. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
99 plot_DetPlot Create De(t) plot Plots the equivalent dose (De) in dependency of the chosen signal integral (cf. Bailey et al., 2003). The function is simply passing several arguments to the function plot and the used analysis functions and runs it in a loop. Example: legend.pos for legend position, legend for legend text. 0.1.3 Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
NA, NA, , , 2021. plot_DetPlot(): Create De(t) plot. Function version 0.1.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
100 plot_DRCSummary Create a Dose-Response Curve Summary Plot While analysing OSL SAR or pIRIR-data the view on the data is limited usually to one dose-response curve (DRC) at the time for one aliquot. This function overcomes this limitation by plotting all DRC from an RLum.Results object created by the function analyse_SAR.CWOSL in one single plot. 0.2.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Christoph Burow, University of Cologne
, RLum Developer Team
Kreutzer, S., Burow, C., 2021. plot_DRCSummary(): Create a Dose-Response Curve Summary Plot. Function version 0.2.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
101 plot_DRTResults Visualise dose recovery test results The function provides a standardised plot output for dose recovery test measurements. 0.1.13 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., 2021. plot_DRTResults(): Visualise dose recovery test results. Function version 0.1.13. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
102 plot_FilterCombinations Plot filter combinations along with the (optional) net transmission window The function allows to plot transmission windows for different filters. Missing data for specific wavelengths are automatically interpolated for the given filter data using the function approx . With that a standardised output is reached and a net transmission window can be shown. 0.3.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_FilterCombinations(): Plot filter combinations along with the (optional) net transmission window. Function version 0.3.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
103 plot_GrowthCurve Fit and plot a growth curve for luminescence data (Lx/Tx against dose) A dose response curve is produced for luminescence measurements using a regenerative or additive protocol. The function supports interpolation and extrapolation to calculate the equivalent dose. 1.11.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., 2021. plot_GrowthCurve(): Fit and plot a growth curve for luminescence data (Lx/Tx against dose). Function version 1.11.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
104 plot_Histogram Plot a histogram with separate error plot Function plots a predefined histogram with an accompanying error plot as suggested by Rex Galbraith at the UK LED in Oxford 2010. 0.4.5 Michael Dietze, GFZ Potsdam (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Dietze, M., Kreutzer, S., 2021. plot_Histogram(): Plot a histogram with separate error plot. Function version 0.4.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
105 plot_KDE Plot kernel density estimate with statistics Plot a kernel density estimate of measurement values in combination with the actual values and associated error bars in ascending order. If enabled, the boxplot will show the usual distribution parameters (median as bold line, box delimited by the first and third quartile, whiskers defined by the extremes and outliers shown as points) and also the mean and standard deviation as pale bold line and pale polygon, respectively. 3.6.0 Michael Dietze, GFZ Potsdam (Germany)
Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Dietze, M., 2021. plot_KDE(): Plot kernel density estimate with statistics. Function version 3.6.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
106 plot_NRt Visualise natural/regenerated signal ratios This function creates a Natural/Regenerated signal vs. time (NR(t)) plot as shown in Steffen et al. 2009 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. plot_NRt(): Visualise natural/regenerated signal ratios. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
107 plot_RadialPlot Function to create a Radial Plot A Galbraith's radial plot is produced on a logarithmic or a linear scale. 0.5.5 Michael Dietze, GFZ Potsdam (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Based on a rewritten S script of Rex Galbraith, 2010
, RLum Developer Team
Dietze, M., Kreutzer, S., 2021. plot_RadialPlot(): Function to create a Radial Plot. Function version 0.5.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
108 plot_Risoe.BINfileData Plot single luminescence curves from a BIN file object Plots single luminescence curves from an object returned by the read_BIN2R function. 0.4.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., 2021. plot_Risoe.BINfileData(): Plot single luminescence curves from a BIN file object. Function version 0.4.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
109 plot_RLum.Analysis Plot function for an RLum.Analysis S4 class object The function provides a standardised plot output for curve data of an RLum.Analysis S4 class object 0.3.13 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum.Analysis(): Plot function for an RLum.Analysis S4 class object. Function version 0.3.13. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
110 plot_RLum.Data.Curve Plot function for an RLum.Data.Curve S4 class object The function provides a standardised plot output for curve data of an RLum.Data.Curve S4-class object. 0.2.5 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum.Data.Curve(): Plot function for an RLum.Data.Curve S4 class object. Function version 0.2.5. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
111 plot_RLum.Data.Image Plot function for an RLum.Data.Image S4 class object The function provides a standardised plot output for image data of an RLum.Data.Image S4 class object, mainly using the plot functions provided by the raster package. Details on the plot functions Image is visualised as 2D plot using generic plot types provided by other packages. Supported plot types: plot.type = "plot.raster" Uses the standard plot function for raster data from the package raster::raster : raster::plot . For each raster layer in a raster brick one plot is produced. Arguments that are passed through the function call: main , axes , xlab , ylab , xlim , ylim , zlim , col , stretch ( NULL no strech) plot.type = "plotRGB" Uses the function raster::plotRGB from the raster::raster package. Only one image plot is produced as all layers in a brick a combined. This plot type is useful to see whether any signal is recorded by the camera. Arguments that are passed through the function call: main , axes , xlab , ylab , ext , interpolate , maxpixels , alpha , colNA , stretch plot.type = "contour" Uses the function contour plot function from the raster function ( raster::contour ). For each raster layer one contour plot is produced. Arguments that are passed through the function call: main , axes , xlab , ylab , xlim , ylim , col 0.1.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum.Data.Image(): Plot function for an RLum.Data.Image S4 class object. Function version 0.1.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
112 plot_RLum.Data.Spectrum Plot function for an RLum.Data.Spectrum S4 class object The function provides a standardised plot output for spectrum data of an RLum.Data.Spectrum class object. The purpose of this function is to provide easy and straight-forward spectra plotting, not provide a full customised access to all plot parameters. If this is wanted, standard R plot functionality should be used instead. Matrix structure (cf. RLum.Data.Spectrum ) rows (x-values): wavelengths/channels ( xlim , xlab ) columns (y-values): time/temperature ( ylim , ylab ) cells (z-values): count values ( zlim , zlab ) Note: This nomenclature is valid for all plot types of this function! Nomenclature for value limiting xlim : Limits values along the wavelength axis ylim : Limits values along the time/temperature axis zlim : Limits values along the count value axis Details on the plot functions Spectrum is visualised as 3D or 2D plot. Both plot types are based on internal R plot functions. plot.type = "persp" Arguments that will be passed to graphics::persp : shade : default is 0.4 phi : default is 15 theta : default is -30 expand : default is 1 ticktype : default is detailed , r : default is 10 Note: Further parameters can be adjusted via par . For example to set the background transparent and reduce the thickness of the lines use: par(bg = NA, lwd = 0.7) previous the function call. plot.type = "single" Per frame a single curve is returned. Frames are time or temperature steps. plot.type = "multiple.lines" All frames plotted in one frame. '** plot.type = "image" or `plot.type = "contour" ** These plot types use the R functions graphics::image or graphics::contour . The advantage is that many plots can be arranged conveniently using standard R plot functionality. If plot.type = "image" a contour is added by default, which can be disabled using the argument contour = FALSE to add own contour lines of choice. plot.type = "transect" Depending on the selected wavelength/channel range a transect over the time/temperature (y-axis) will be plotted along the wavelength/channels (x-axis). If the range contains more than one channel, values (z-values) are summed up. To select a transect use the xlim argument, e.g. xlim = c(300,310) plot along the summed up count values of channel 300 to 310. Further arguments that will be passed (depending on the plot type) xlab , ylab , zlab , xlim , ylim , zlim , main , mtext , pch , type ( "single" , "multiple.lines" , "interactive" ), col , border , box lwd , bty , showscale ( "interactive" , "image" ) contour , contour.col ( "image" ) 0.6.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum.Data.Spectrum(): Plot function for an RLum.Data.Spectrum S4 class object. Function version 0.6.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
113 plot_RLum General plot function for RLum S4 class objects Function calls object specific plot functions for RLum S4 class objects. 0.4.4 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_RLum(): General plot function for RLum S4 class objects. Function version 0.4.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
114 plot_RLum.Results Plot function for an RLum.Results S4 class object The function provides a standardised plot output for data of an RLum.Results S4 class object 0.2.1 Christoph Burow, University of Cologne (Germany)
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Burow, C., Kreutzer, S., 2021. plot_RLum.Results(): Plot function for an RLum.Results S4 class object. Function version 0.2.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
115 plot_ROI Create Regions of Interest (ROI) Graphic Create ROI graphic with data extracted from the data imported via read_RF2R . This function is used internally by analyse_IRSAR.RF but might be of use to work with reduced data from spatially resolved measurements. The plot dimensions mimic the original image dimensions 0.1.0 Sebastian Kreutzer, Department of Geography & Earth Sciences, Aberystwyth University
(United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_ROI(): Create Regions of Interest (ROI) Graphic. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
116 plot_ViolinPlot Create a violin plot Draws a kernel density plot in combination with a boxplot in its middle. The shape of the violin is constructed using a mirrored density curve. This plot is especially designed for cases where the individual errors are zero or to small to be visualised. The idea for this plot is based on the the 'volcano plot' in the ggplot2 package by Hadley Wickham and Winston Chang. The general idea for the violin plot seems to be introduced by Hintze and Nelson (1998). The function is passing several arguments to the function plot , stats::density , graphics::boxplot : Supported arguments are: xlim , main , xlab , ylab , col.violin , col.boxplot , mtext , cex , mtext Valid summary keywords 'n' , 'mean' , 'median' , 'sd.abs' , 'sd.rel' , 'se.abs' , 'se.rel' . 'skewness' , 'kurtosis' 0.1.4 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. plot_ViolinPlot(): Create a violin plot. Function version 0.1.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
117 PSL2Risoe.BINfileData Convert portable OSL data to an Risoe.BINfileData object Converts an RLum.Analysis object produced by the function read_PSL2R() to an Risoe.BINfileData object (BETA) . 0.0.1 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. PSL2Risoe.BINfileData(): Convert portable OSL data to an Risoe.BINfileData object. Function version 0.0.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
118 read_BIN2R Import Risø BIN/BINX-files into R Import a *.bin or a *.binx file produced by a Risø DA15 and DA20 TL/OSL reader into R. 0.16.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Margret C. Fuchs, HZDR Freiberg, (Germany)
based on information provided by Torben Lapp and Karsten Bracht Nielsen (Risø DTU, Denmark)
, RLum Developer Team
Kreutzer, S., Fuchs, M.C., 2021. read_BIN2R(): Import Risø BIN/BINX-files into R. Function version 0.16.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
119 read_Daybreak2R Import measurement data produced by a Daybreak TL/OSL reader into R Import a TXT-file (ASCII file) or a DAT-file (binary file) produced by a Daybreak reader into R. The import of the DAT-files is limited to the file format described for the software TLAPLLIC v.3.2 used for a Daybreak, model 1100. 0.3.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Antoine Zink, C2RMF, Palais du Louvre, Paris (France)

The ASCII-file import is based on a suggestion by Willian Amidon and Andrew Louis Gorin
, RLum Developer Team
Kreutzer, S., Zink, A., 2021. read_Daybreak2R(): Import measurement data produced by a Daybreak TL/OSL reader into R. Function version 0.3.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
120 read_PSL2R Import PSL files to R Imports PSL files produced by a SUERC portable OSL reader into R (BETA) . 0.0.1 Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Burow, C., 2021. read_PSL2R(): Import PSL files to R. Function version 0.0.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
121 read_RF2R Import RF-files to R Import files produced by the IR-RF 'ImageJ' macro (#TODO ADD REFERENCE) into R and create a list of RLum.Analysis objects 0.1.0 Sebastian Kreutzer, Geography & Earth Science, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. read_RF2R(): Import RF-files to R. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
122 read_SPE2R Import Princeton Instruments (TM) SPE-file into R Function imports Princeton Instruments (TM) SPE-files into R environment and provides RLum.Data.Image objects as output. 0.1.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. read_SPE2R(): Import Princeton Instruments (TM) SPE-file into R. Function version 0.1.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
123 read_TIFF2R Import TIFF Image Data into R Simple wrapper around [tiff::readTIFF] to import TIFF images and TIFF image stacks to be further processed within the package 'Luminescence' 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. read_TIFF2R(): Import TIFF Image Data into R. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
124 read_XSYG2R Import XSYG files to R Imports XSYG-files produced by a Freiberg Instruments lexsyg reader into R. 0.6.8 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. read_XSYG2R(): Import XSYG files to R. Function version 0.6.8. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
125 replicate_RLum General replication function for RLum S4 class objects Function replicates RLum S4 class objects and returns a list for this objects 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. replicate_RLum(): General replication function for RLum S4 class objects. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
126 report_RLum Create a HTML-report for (RLum) objects Create a HTML-report for (RLum) objects 0.1.4 Christoph Burow, University of Cologne (Germany),
Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Burow, C., Kreutzer, S., 2021. report_RLum(): Create a HTML-report for (RLum) objects. Function version 0.1.4. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
127 Risoe.BINfileData-class Class "Risoe.BINfileData" S4 class object for luminescence data in R. The object is produced as output of the function read_BIN2R . 0.4.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
based on information provided by Torben Lapp and Karsten Bracht Nielsen (Risø DTU, Denmark)
, RLum Developer Team
Kreutzer, S., 2021. Risoe.BINfileData-class(): Class 'Risoe.BINfileData'. Function version 0.4.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
128 Risoe.BINfileData2RLum.Analysis Convert Risoe.BINfileData object to an RLum.Analysis object Converts values from one specific position of a Risoe.BINfileData S4-class object to an RLum.Analysis object. 0.4.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. Risoe.BINfileData2RLum.Analysis(): Convert Risoe.BINfileData object to an RLum.Analysis object. Function version 0.4.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
129 RLum-class Class "RLum" Abstract class for data in the package Luminescence Subclasses are: Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum-class(): Class 'RLum'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
130 RLum.Analysis-class Class "RLum.Analysis" Object class to represent analysis data for protocol analysis, i.e. all curves, spectra etc. from one measurements. Objects from this class are produced, by e.g. read_XSYG2R , read_Daybreak2R Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Analysis-class(): Class 'RLum.Analysis'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
131 RLum.Data-class Class "RLum.Data" Generalized virtual data class for luminescence data. Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
132 RLum.Data.Curve-class Class "RLum.Data.Curve" Class for representing luminescence curve data. Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS - Université Bordeaux Montaigne (France)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Data.Curve-class(): Class 'RLum.Data.Curve'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
133 RLum.Data.Image-class Class "RLum.Data.Image" Class for representing luminescence image data (TL/OSL/RF). Such data are for example produced by the function read_SPE2R Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Data.Image-class(): Class 'RLum.Data.Image'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
134 RLum.Data.Spectrum-class Class "RLum.Data.Spectrum" Class for representing luminescence spectra data (TL/OSL/RF). Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Data.Spectrum-class(): Class 'RLum.Data.Spectrum'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
135 RLum.Results-class Class "RLum.Results" Object class contains results data from functions (e.g., analyse_SAR.CWOSL ). Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. RLum.Results-class(): Class 'RLum.Results'. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
136 scale_GammaDose Calculate the gamma dose deposited within a sample taking layer-to-layer
variations in radioactivity into account (according to Aitken, 1985)
This function calculates the gamma dose deposited in a luminescence sample taking into account layer-to-layer variations in sediment radioactivity . The function scales user inputs of uranium, thorium and potassium based on input parameters for sediment density, water content and given layer thicknesses and distances to the sample. 0.1.2 Svenja Riedesel, Aberystwyth University (United Kingdom)
Martin Autzen, DTU NUTECH Center for Nuclear Technologies (Denmark)
Christoph Burow, University of Cologne (Germany)
Based on an excel spreadsheet and accompanying macro written by Ian Bailiff.
, RLum Developer Team
Riedesel, S., Autzen, M., Burow, C., 2021. scale_GammaDose(): Calculate the gamma dose deposited within a sample taking layer-to-layer variations in radioactivity into account (according to Aitken, 1985). Function version 0.1.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
137 Second2Gray Converting equivalent dose values from seconds (s) to Gray (Gy) Conversion of absorbed radiation dose in seconds (s) to the SI unit Gray (Gy) including error propagation. Normally used for equivalent dose data. 0.6.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
Margret C. Fuchs, HZDR, Helmholtz-Institute Freiberg for Resource Technology (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., Fuchs, M.C., 2021. Second2Gray(): Converting equivalent dose values from seconds (s) to Gray (Gy). Function version 0.6.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
138 set_Risoe.BINfileData General accessor function for RLum S4 class objects Function calls object-specific get functions for RisoeBINfileData S4 class objects. 0.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. set_Risoe.BINfileData(): General accessor function for RLum S4 class objects. Function version 0.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
139 set_RLum General set function for RLum S4 class objects Function calls object-specific set functions for RLum S4 class objects. 0.3.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. set_RLum(): General set function for RLum S4 class objects. Function version 0.3.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
140 smooth_RLum Smoothing of data Function calls the object-specific smooth functions for provided RLum S4-class objects. 0.1.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. smooth_RLum(): Smoothing of data. Function version 0.1.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
141 sTeve sTeve - sophisticated tool for efficient data validation and evaluation This function provides a sophisticated routine for comprehensive luminescence dating data analysis. R Luminescence Team, 2012-2046
, RLum Developer Team
NA, NA, , , 2021. sTeve(): sTeve - sophisticated tool for efficient data validation and evaluation. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
142 structure_RLum General structure function for RLum S4 class objects Function calls object-specific get functions for RLum S4 class objects. 0.2.0 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. structure_RLum(): General structure function for RLum S4 class objects. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
143 template_DRAC Create a DRAC input data template (v1.2) This function returns a DRAC input template (v1.2) to be used in conjunction with the use_DRAC function Christoph Burow, University of Cologne (Germany), Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Burow, C., Kreutzer, S., 2021. template_DRAC(): Create a DRAC input data template (v1.2). In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
144 tune_Data Tune data for experimental purpose The error can be reduced and sample size increased for specific purpose. 0.5.0 Michael Dietze, GFZ Potsdam (Germany)
, RLum Developer Team
Dietze, M., 2021. tune_Data(): Tune data for experimental purpose. Function version 0.5.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
145 use_DRAC Use DRAC to calculate dose rate data The function provides an interface from R to DRAC. An R-object or a pre-formatted XLS/XLSX file is passed to the DRAC website and the results are re-imported into R. 0.1.3 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
Michael Dietze, GFZ Potsdam (Germany)
Christoph Burow, University of Cologne (Germany)
, RLum Developer Team
Kreutzer, S., Dietze, M., Burow, C., 2021. use_DRAC(): Use DRAC to calculate dose rate data. Function version 0.1.3. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
146 verify_SingleGrainData Verify single grain data sets and check for invalid grains, i.e.
zero-light level grains
This function tries to identify automatically zero-light level curves (grains) from single grain data measurements. 0.2.2 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. verify_SingleGrainData(): Verify single grain data sets and check for invalid grains, i.e. zero-light level grains. Function version 0.2.2. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
147 write_R2BIN Export Risoe.BINfileData into Risø BIN/BINX-file Exports a Risoe.BINfileData object in a *.bin or *.binx file that can be opened by the Analyst software or other Risø software. 0.5.1 Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. write_R2BIN(): Export Risoe.BINfileData into Risø BIN/BINX-file. Function version 0.5.1. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence
148 write_RLum2CSV Export RLum-objects to CSV This function exports RLum -objects to CSV-files using the R function utils::write.table . All RLum -objects are supported, but the export is lossy, i.e. the pure numerical values are exported only. Information that cannot be coerced to a data.frame or a matrix are discarded as well as metadata. 0.2.0 Sebastian Kreutzer, Geography & Earth Science, Aberystwyth University (United Kingdom)
, RLum Developer Team
Kreutzer, S., 2021. write_RLum2CSV(): Export RLum-objects to CSV. Function version 0.2.0. In: Kreutzer, S., Burow, C., Dietze, M., Fuchs, M.C., Schmidt, C., Fischer, M., Friedrich, J., Mercier, N., Philippe, A., Riedesel, S., Autzen, M., Mittelstrass, D., Gray, H.J., 2021. Luminescence: Comprehensive Luminescence Dating Data Analysis. R package version 0.9.14. https://CRAN.R-project.org/package=Luminescence