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Dunlin sample information
dryad_dunlin_sample_info.csv
Dunlin_HighSeq_2014_R1_001.fastq
Genomic data from Illumina sequencing for Dunlin
Toews_Dunlin_HighSeq_2014_R1.tar
Dunlin_HighSeq_2014_R2_001.fastq
Genomic data from Illumina sequencing for Dunlin
Toews_Dunlin_HighSeq_2014_R2.tar
", "type": { "id": "notes", "title": { "de": "Anmerkungen", "en": "Notes" } } } ], "creators": [ { "person_or_org": { "family_name": "Popovic", "given_name": "Iva", "name": "Popovic, Iva", "type": "personal" } }, { "person_or_org": { "family_name": "Toews", "given_name": "David P. L.", "name": "Toews, David P. L.", "type": "personal" } }, { "person_or_org": { "family_name": "Keever", "given_name": "Carson C.", "name": "Keever, Carson C.", "type": "personal" } }, { "person_or_org": { "family_name": "Clair", "given_name": "C. Toby St.", "name": "Clair, C. Toby St.", "type": "personal" } }, { "person_or_org": { "family_name": "Barbaree", "given_name": "Blake A.", "name": "Barbaree, Blake A.", "type": "personal" } }, { "person_or_org": { "family_name": "Fern\u00e1ndez", "given_name": "Guillermo", "name": "Fern\u00e1ndez, Guillermo", "type": "personal" } }, { "person_or_org": { "family_name": "Rourke", "given_name": "James", "name": "Rourke, James", "type": "personal" } } ], "description": "Information on how migratory populations are genetically structured during the overwintering season of the annual cycle can improve our understanding of the strength of migratory connectivity and help identify populations as units for management. Here, we use a genotype-by-sequencing approach to investigate whether population genetic structure exists among overwintering aggregations of the Pacific Dunlin subspecies (Calidris alpina pacifica) sampled at two spatial scales (i.e. within and among overwintering sites) in the eastern Pacific Flyway. Genome-wide analyses of 874 single nucleotide polymorphisms across 80 sampled individuals revealed no evidence for genetic differentiation among aggregations overwintering at three locations within the Fraser River Estuary (FRE) of British Columbia. Similarly, comparisons of aggregations in the FRE and those overwintering in southern sites in California and Mexico indicated no genetic segregation between northern and\nsouthern overwintering areas. These results suggest that Pacific Dunlin residing within the FRE, Sacramento Valley (California) and Guerrero Negro (Mexico) are genetically homogeneous, with no evident genetic structure between sampled sites or regions across the overwintering range. Despite no evidence for differentiation among aggregations, we identified a significant effect of geographical distance between sites on the distribution of individual genotypes in a redundancy analysis; however, a small proportion of the total genotypic variance (R2 = 0.036, P = 0.011) was explained by the combined effect of latitude and longitude, suggesting weak genomic patterns of isolation-by-distance that are consistent with chain-like migratory connectivity between breeding and overwintering areas. Our study represents the first genome-scale investigation of population structure for a Dunlin subspecies and provides essential baseline estimates of genomic diversity and differentiation\nwithin the Pacific Dunlin.", "locations": { "features": [ { "place": "Mexico" }, { "place": "British Columbia" }, { "place": "California" } ] }, "publication_date": "2019-09-04", "publisher": "Zenodo", "related_identifiers": [ { "identifier": "10.1093/condor/duz036", "relation_type": { "id": "iscitedby", "title": { "de": "Wird zitiert von", "en": "Is cited by" } }, "scheme": "doi" } ], "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "CC0 waives copyright interest in a work you've created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach." }, "icon": "cc-cc0-icon", "id": "cc0-1.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/publicdomain/zero/1.0/legalcode" }, "title": { "en": "Creative Commons Zero v1.0 Universal" } } ], "subjects": [ { "subject": "Calidris alpina pacifica" }, { "subject": "genotype-by-sequencing" } ], "title": "Data from: Genotyping-by-sequencing reveals genomic homogeneity among overwintering Pacific Dunlin (Calidris alpina pacifica) aggregations along the Pacific coast of North America" }, "parent": { "access": { "owned_by": { "user": "90070" } }, "communities": { "default": "734b6452-1f40-4db0-b218-08ab1d568b7f", "entries": [ { "access": { "member_policy": "open", "members_visibility": "public", "record_submission_policy": "open", "review_policy": "open", "visibility": "public" }, "children": { "allow": false }, "created": "2020-02-04T14:03:17.992421+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "id": "734b6452-1f40-4db0-b218-08ab1d568b7f", "links": {}, "metadata": { "curation_policy": "

The Dryad collection in Zenodo contains datasets mirrored from the Dryad Digital Repository. If you want your dataset to appear here, submit it through https://datadryad.org. No other datasets will be accepted.

", "description": "Dryad is an international open-access repository of research data, especially data underlying scientific and medical publications. Dryad is a curated general-purpose repository that makes data discoverable, freely reusable, and citable.", "organizations": [ { "id": "00x6h5n95" } ], "page": "

Dryad is a community-governed open data publishing and curation repository. Through Dryad and Zenodo's partnership, Zenodo hosts a preservation copy of Dryad datasets, available through this Zenodo Community. For more information or to access the original published datasets, visit https://datadryad.org.

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