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genepop_all_snps
Genotypes data (all loci) for S. namaycush individuals in Genepop format.
genepop_pot_selected_snps
Genotypes data (48 potentially selected loci, intersection of Bayenv2 and LFMM results) for S. namaycush individuals in Genepop format.
population_map
Individual's population membership (by population (or lake) or sympatric ecotype).
population_map_ecotype
Individual's ecotype membership (by population (or lake) or sympatric ecotype).
geometric_morphometrics
Geometric morphometrics data in TPS format.
infos_tps
Information (ecotype and sex) for geometric morphometrics analyses.
measurements
Gill rakers and linear measurements data.
ReadMe
Information about the files.
read_me.txt
", "type": { "id": "notes", "title": { "de": "Anmerkungen", "en": "Notes" } } } ], "creators": [ { "affiliations": [ { "name": "Universit\u00e9 Laval" } ], "person_or_org": { "family_name": "Bernatchez", "given_name": "Simon", "name": "Bernatchez, Simon", "type": "personal" } }, { "affiliations": [ { "name": "Universit\u00e9 Laval" } ], "person_or_org": { "family_name": "Laporte", "given_name": "Martin", "name": "Laporte, Martin", "type": "personal" } }, { "affiliations": [ { "name": "Universit\u00e9 Laval" } ], "person_or_org": { "family_name": "Perrier", "given_name": "Charles", "name": "Perrier, Charles", "type": "personal" } }, { "affiliations": [ { "name": "Universit\u00e9 du Qu\u00e9bec \u00e0 Chicoutimi" } ], "person_or_org": { "family_name": "Sirois", "given_name": "Pascal", "name": "Sirois, Pascal", "type": "personal" } }, { "affiliations": [ { "name": "Universit\u00e9 Laval" } ], "person_or_org": { "family_name": "Bernatchez", "given_name": "Louis", "name": "Bernatchez, Louis", "type": "personal" } } ], "description": "Repeated adaptive ecological diversification has commonly been reported in fish and has often been associated with trophic niche diversity. The main goal of this study was to investigate the extent of parallelism in the genomic and phenotypic divergence between piscivorous and planktivorous lake trout ecotypes from Laurentian Shield lakes, Canada. This was achieved by documenting the extent of morphological differentiation using geometric morphometrics and linear measurements as well as the pattern of genomic divergence by means of RADseq genotyping (3925 filtered SNPs) in 12 lakes. Our results indicate that the two ecotypes evolved distinct body shape and several linear measurements in parallel. Neutral genetic differentiation was pronounced between all isolated populations (Mean FST = 0.433), indicating no or very limited migration and pronounced genetic drift. Significant genetic differentiation also suggested partial reproductive isolation between ecotypes in the two lakes where they are found in sympatry. Combining different outlier detection methods, we identified 48 SNPs putatively under divergent selection between ecotypes, among which 10 could be annotated and related to functions such as developmental processes and ionic regulation. Finally, our results indicate that parallel morphological divergence is accompanied by both parallel and nonparallel genomic divergence, which is associated with the use of different trophic niches between ecotypes. The results are also discussed in the context of management and conservation of this highly exploited species throughout northern North America.", "locations": { "features": [ { "place": "Canada" }, { "place": "Quebec" } ] }, "publication_date": "2016-08-05", "publisher": "Zenodo", "related_identifiers": [ { "identifier": "10.1111/mec.13795", "relation_type": { "id": "iscitedby", "title": { "de": "Wird zitiert von", "en": "Is cited by" } }, "scheme": "doi" } ], "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "CC0 waives copyright interest in a work you've created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach." }, "icon": "cc-cc0-icon", "id": "cc0-1.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/publicdomain/zero/1.0/legalcode" }, "title": { "en": "Creative Commons Zero v1.0 Universal" } } ], "subjects": [ { "subject": "Genomics/Proteomics" }, { "subject": "Conservation Biology" } ], "title": "Data from: Investigating genomic and phenotypic parallelism between piscivorous and planktivorous lake trout (Salvelinus namaycush) ecotypes by means of RADseq and morphometrics analyses" }, "parent": { "access": { "owned_by": { "user": "90070" } }, "communities": { "default": "734b6452-1f40-4db0-b218-08ab1d568b7f", "entries": [ { "access": { "member_policy": "open", "members_visibility": "public", "record_submission_policy": "open", "review_policy": "open", "visibility": "public" }, "children": { "allow": false }, "created": "2020-02-04T14:03:17.992421+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "id": "734b6452-1f40-4db0-b218-08ab1d568b7f", "links": {}, "metadata": { "curation_policy": "

The Dryad collection in Zenodo contains datasets mirrored from the Dryad Digital Repository. If you want your dataset to appear here, submit it through https://datadryad.org. No other datasets will be accepted.

", "description": "Dryad is an international open-access repository of research data, especially data underlying scientific and medical publications. Dryad is a curated general-purpose repository that makes data discoverable, freely reusable, and citable.", "organizations": [ { "id": "00x6h5n95" } ], "page": "

Dryad is a community-governed open data publishing and curation repository. Through Dryad and Zenodo's partnership, Zenodo hosts a preservation copy of Dryad datasets, available through this Zenodo Community. For more information or to access the original published datasets, visit https://datadryad.org.

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