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Table S1
Data for the hynobiids used in this study on DNA barcoding. DNA vouchers are deposited at Chengdu Institute of Biology (CIB), Chinese Academy of Sciences.
Table S2
Homologous DNA sequences downloaded from GenBank.
Table S3
Intraspecific and interspecific genetic divergence (K2P model) for 31 species in the Hynobiidae.
", "type": { "id": "notes", "title": { "de": "Anmerkungen", "en": "Notes" } } } ], "creators": [ { "affiliations": [ { "name": "Chinese Academy of Sciences" } ], "person_or_org": { "family_name": "Xia", "given_name": "Yun", "name": "Xia, Yun", "type": "personal" } }, { "affiliations": [ { "name": "Chinese Academy of Sciences" } ], "person_or_org": { "family_name": "Gu", "given_name": "Hai-Feng", "name": "Gu, Hai-Feng", "type": "personal" } }, { "affiliations": [ { "name": "Chinese Academy of Sciences" } ], "person_or_org": { "family_name": "Peng", "given_name": "Rui", "name": "Peng, Rui", "type": "personal" } }, { "affiliations": [ { "name": "Chinese Academy of Sciences" } ], "person_or_org": { "family_name": "Chen", "given_name": "Qin", "name": "Chen, Qin", "type": "personal" } }, { "affiliations": [ { "name": "Chinese Academy of Sciences" } ], "person_or_org": { "family_name": "Zheng", "given_name": "Yu-Chi", "name": "Zheng, Yu-Chi", "type": "personal" } }, { "affiliations": [ { "name": "Chinese Academy of Sciences" } ], "person_or_org": { "family_name": "Murphy", "given_name": "Robert W", "name": "Murphy, Robert W", "type": "personal" } }, { "affiliations": [ { "name": "Chinese Academy of Sciences" } ], "person_or_org": { "family_name": "Zeng", "given_name": "Xiao-Mao", "name": "Zeng, Xiao-Mao", "type": "personal" } } ], "description": "The 5' region of the mitochondrial DNA (mtDNA) gene cytochrome c oxidase I (COI) is the standard marker for DNA barcoding. However, because COI tends to be highly variable in amphibians, sequencing is often challenging. Consequently, another mtDNA gene, 16S rRNA gene, is often advocated for amphibian barcoding. Herein, we directly compare the usefulness of COI and 16S in discriminating species of hynobiid salamanders using 130 individuals. Species identification and classification of these animals, which are endemic to Asia, is often based on morphology only. Analysis of Kimura 2-parameter genetic distances (K2P) documents the mean intraspecific variation for COI and 16S rRNA genes to be 1.4% and 0.3%, respectively. Whereas COI can always identify species, sometimes 16S cannot. Intra- and interspecific genetic divergences occasionally overlap in both markers thus reducing the value of a barcoding gap to identify genera. Regardless, COI is the better DNA barcoding marker for hynobiids. In addition to the comparison of two potential markers, high levels of intraspecific divergence in COI (>5%) suggest that both Onychodactylus fischeri and Salamandrella keyserlingii might be composites of cryptic species.", "publication_date": "2011-06-29", "publisher": "Zenodo", "related_identifiers": [ { "identifier": "10.1111/j.1755-0998.2011.03055.x", "relation_type": { "id": "iscitedby", "title": { "de": "Wird zitiert von", "en": "Is cited by" } }, "scheme": "doi" } ], "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "CC0 waives copyright interest in a work you've created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach." }, "icon": "cc-cc0-icon", "id": "cc0-1.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/publicdomain/zero/1.0/legalcode" }, "title": { "en": "Creative Commons Zero v1.0 Universal" } } ], "subjects": [ { "subject": "Hynobiidae" }, { "subject": "species identification" } ], "title": "Data from: COI is better than 16S rRNA for DNA barcoding Asiatic salamanders (Amphibia: Caudata: Hynobiidae)" }, "parent": { "access": { "owned_by": { "user": "90070" } }, "communities": { "default": "734b6452-1f40-4db0-b218-08ab1d568b7f", "entries": [ { "access": { "member_policy": "open", "members_visibility": "public", "record_submission_policy": "open", "review_policy": "open", "visibility": "public" }, "children": { "allow": false }, "created": "2020-02-04T14:03:17.992421+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "id": "734b6452-1f40-4db0-b218-08ab1d568b7f", "links": {}, "metadata": { "curation_policy": "

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