File pb_filtered_data.txt
This file presents filtered data found in the experiments without blocking oligonucleotide. It contains the number of occurrences of each sequence in the different samples, as well as different columns related to the taxonomic identification of the sequences.
The sequences have been generated by the Illumina technology (GA IIx sequencing platform).
Data collection:
    WASIM SHEHZAD, TIAYYBA RIAZ, MUHAMMAD ALI NAWAZ, CHRISTIAN MIQUEL, CAROLE POILLOT, SAFDAR ALI SHAH, FRANCOIS POMPANON, ERIC COISSAC and PIERRE TABERLET
Contact author: 
    PIERRE TABERLET (pierre.taberlet@ujf-grenoble.fr)
Column heading:
    sample:PP_F004: number of reads of the relevant sequence for sample PP_F004
    sample:PP_F010: see above
    ...
    sample:UU_F066: see above
    order_taxid: taxid of the identified order
    order_name: name of the identified order
    family_taxid: taxid of the identified family
    family_name: name of the identified family
    genus_taxid: taxid of the identified genus
    genus_name: name of the identified genus
    species_taxid: taxid of the identified species
    species_name: name of the identified species
    taxid: taxid of the scientific name
    rank: level of identification (order, family, etc.)
    scientific_name: final identification based on GenBank (can be an order, family, tribe, genus, species, etc.)
    best_identity: best match with the closest sequence in the reference database (GenBank)
    best_match: id of the closest sequence in the reference database
    expert_id: final identification taking into account the list of species occurring in the area
    count: number of occurences of the sequence in all the samples.
    sequence: DNA sequence
Missing data: NA