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3257_snps_Pvitt
Filtered dataset PED format consisting of 3,257 SNPs genotyped in 185 individuals of Phaulacridium vittatum.
3257_snps_Pvitt
Datafile (map format) consisting names of 3257 loci
11408_snps_Pvitt
Filtered dataset consisting of 11,408 SNPs genotyped in 185 individuals used for adaptive genetic analysis
11408_snps_Pvitt
Map file containing 11,408 SNP loci name.
Model_selection_Landcover
R script to perform model selection
alpha_gamma_values
Datafile consisting values of of alpha and gamma. Required to generate resistance surfaces.
Landcover_150m_res
Re-classified landcover raster file used to generate multiple resistance surfaces.
BIO1_Mean_annual_temp
Annual mean temperature raster file used to generate multiple resistance surfaces
Morphology_185_ind_Pvitt
Morphological data of 185 individuals used to test morph-environment association in LFMM.
", "type": { "id": "notes", "title": { "de": "Anmerkungen", "en": "Notes" } } } ], "creators": [ { "affiliations": [ { "name": "Macquarie University" } ], "person_or_org": { "family_name": "Yadav", "given_name": "Sonu", "name": "Yadav, Sonu", "type": "personal" } }, { "affiliations": [ { "name": "Macquarie University" } ], "person_or_org": { "family_name": "Stow", "given_name": "Adam J.", "name": "Stow, Adam J.", "type": "personal" } }, { "affiliations": [ { "name": "Macquarie University" } ], "person_or_org": { "family_name": "Dudaniec", "given_name": "Rachael Y.", "name": "Dudaniec, Rachael Y.", "type": "personal" } } ], "description": "Widespread species that exhibit both high gene flow and the capacity to occupy heterogeneous environments make excellent models for examining local selection processes along environmental gradients. Here we evaluate the influence of temperature and landscape variables on genetic connectivity and signatures of local adaptation in Phaulacridium vittatum, a widespread agricultural pest grasshopper, endemic to Australia. With sampling across a 900 km latitudinal gradient, we genotyped 185 P. vittatum from 19 sites at 11,408 single nucleotide polymorphisms (SNPs) using ddRAD sequencing. Despite high gene flow across sites (pairwise Fst = 0.0003-0.08), landscape genetic resistance modelling identified a positive non-linear effect of mean annual temperature on genetic connectivity. Urban areas and water bodies had a greater influence on genetic distance among sites than pasture, agricultural areas, and forest. Together, Fst outlier tests and Environmental Association Analysis (EAA) detected 242 unique SNPs under putative selection, with the highest numbers associated with latitude, mean annual temperature, and body size. A combination of landscape genetic connectivity analysis together with EAA identified mean annual temperature as a key driver of both neutral gene flow and environmental selection processes. Gene annotation of putatively adaptive SNPs matched with gene functions for olfaction, metabolic detoxification and ultra-violet light shielding. Our results imply that this widespread agricultural pest has the potential to spread and adapt under shifting temperature regimes and land cover change.", "locations": { "features": [ { "place": "New South Wales Australia" } ] }, "publication_date": "2019-05-21", "publisher": "Zenodo", "related_identifiers": [ { "identifier": "10.1111/mec.15146", "relation_type": { "id": "iscitedby", "title": { "de": "Wird zitiert von", "en": "Is cited by" } }, "scheme": "doi" } ], "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "CC0 waives copyright interest in a work you've created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach." }, "icon": "cc-cc0-icon", "id": "cc0-1.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/publicdomain/zero/1.0/legalcode" }, "title": { "en": "Creative Commons Zero v1.0 Universal" } } ], "subjects": [ { "subject": "landscape genomics" }, { "subject": "Population connectivity" }, { "subject": "2017" }, { "subject": "Phaulacridium vittatum" }, { "subject": "pest grasshopper" }, { "subject": "resistance modelling" } ], "title": "Data from: Detection of environmental and morphological adaptation despite high landscape genetic connectivity in a pest grasshopper (Phaulacridium vittatum)" }, "parent": { "access": { "owned_by": { "user": "90070" } }, "communities": { "default": "734b6452-1f40-4db0-b218-08ab1d568b7f", "entries": [ { "access": { "member_policy": "open", "members_visibility": "public", "record_submission_policy": "open", "review_policy": "open", "visibility": "public" }, "children": { "allow": false }, "created": "2020-02-04T14:03:17.992421+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "id": "734b6452-1f40-4db0-b218-08ab1d568b7f", "links": {}, "metadata": { "curation_policy": "

The Dryad collection in Zenodo contains datasets mirrored from the Dryad Digital Repository. If you want your dataset to appear here, submit it through https://datadryad.org. No other datasets will be accepted.

", "description": "Dryad is an international open-access repository of research data, especially data underlying scientific and medical publications. Dryad is a curated general-purpose repository that makes data discoverable, freely reusable, and citable.", "organizations": [ { "id": "00x6h5n95" } ], "page": "

Dryad is a community-governed open data publishing and curation repository. Through Dryad and Zenodo's partnership, Zenodo hosts a preservation copy of Dryad datasets, available through this Zenodo Community. For more information or to access the original published datasets, visit https://datadryad.org.

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