T cell repertoire characterization data are provided herein as a supplement to: 

Defining the alloreactive T cell repertoire using high-throughput sequencing of mixed lymphocyte reaction culture

by RO Emerson, JM Mathew, IM Konieczna, HS Robins and JR Leventhal

These are the original data used for the analyses presented in the manuscript, 24 files in total:

MLR7_TCR1_Fresh_1.adap.txt.results.tsv
MLR7_TCR1_Fresh_2.adap.txt.results.tsv
MLR7_TCR1_Proliferating_1.adap.txt.results.tsv
MLR7_TCR1_Proliferating_2.adap.txt.results.tsv

MLR8_TCR2_Fresh_1.adap.txt.results.tsv
MLR8_TCR2_Fresh_2.adap.txt.results.tsv
MLR8_TCR2_Proliferating_1.adap.txt.results.tsv
MLR8_TCR2_Proliferating_2.adap.txt.results.tsv

MLR9_TCR3_Fresh_1.adap.txt.results.tsv
MLR9_TCR3_Fresh_2.adap.txt.results.tsv
MLR9_TCR3_Proliferating_1.adap.txt.results.tsv
MLR9_TCR3_Proliferating_2.adap.txt.results.tsv

TCR4_Fresh_Responder_R_1.adap.txt.results.tsv
TCR4_Fresh_Responder_R_2.adap.txt.results.tsv
TCR4_Proliferating_1.adap.txt.results.tsv
TCR4_Proliferating_2.adap.txt.results.tsv

TCR5_Fresh_Responder_R_1.adap.txt.results.tsv
TCR5_Fresh_Responder_R_2.adap.txt.results.tsv
TCR5_Proliferating_1.adap.txt.results.tsv
TCR5_Proliferating_2.adap.txt.results.tsv

TCR6_Fresh_Responder_R_1.adap.txt.results.tsv
TCR6_Fresh_Responder_R_2.adap.txt.results.tsv
TCR6_Proliferating_1.adap.txt.results.tsv
TCR6_Proliferating_2.adap.txt.results.tsv

Samples are arranged according to donor pairs;
MLR7/TCR4, MLR8/TCR5 and MLR9/TCR6 are the same pairs of subjects,
with experiments separated by three months.  Each experiment has
four associated files, two fresh samples (PCR replicates to increase
sampling depth, which were concatenated for the analysis in the paper)
and two proliferating samples (the results of two duplicate cell culture
experiments).

Each file is a set of TCR sequencing data, one line per unique TCR observed
in the dataset, with tab-separated columns of additional annotations.

Relevant annotation columns:

nucleotide - nucleotide sequence of the CDR3 region
aminoAcid - Amino Acid translation of the CDR3 region
count - Sequence read counts for this receptor
frequencyCount - Proportional abundance of this receptor in the dataset
cdr3Length - length of the CDR3 region (in NT)
vMaxResolved - The V gene segment used in this rearrangement
dMaxResolved - The D gene segment used in this rearrangement
jMaxResolved - The J gene segment used in this rearrangement
vDeletion - The number of bases deleted from the V gene segment during rearrangement
d5Deletion - The number of bases deleted from the 5' end of the D gene segment during rearrangement
d3Deletion - The number of bases deleted from the 3' end of the D gene segment during rearrangement
jDeletion - The number of bases deleted from the J gene segment during rearrangement
n2Insertion - The number of inserted bases between the V and DJ gene segments during rearrangement
n1Insertion - The number of inserted bases between the D and J gene segments during rearrangement
estimatedNumberGenomes - The estimated number of template molecules (i.e., cells) for this receptor in the source sample
sequenceStatus - The status (In-frame, out-of-frame, stop codon) of this receptor.  'In' are predicted to encode functional receptor proteins