TITLE: Genetic homogeneity in the face of morphological heterogeneity in the harbor porpoise from the Black Sea and adjacent waters (Phocoena phocoena relicta) AUTHORS: Yacine Ben Chehida, Julie Thumloup, Karina Vishnyakova, Pavel Gol’din, Michael C. Fontaine JOURNAL: HEREDITY Data harbor porpoises Black and Azov seas DRYAD including: stranding locations, latitude, longitude, dates, microsatellite genotyping and mitochondrial haplotypes. Data_Heredity_BenChehida_Fontaine_2019.xlsx The tarball archive Scripts_Figures.tar.gz includes the scripts and data used to generated the Figures of the manuscript. In a terminal, use the command "tar xzvf Scripts_Figures.tar.gz" to extract the archive. The script archive includes the following elements. Each directory includes a readme.txt file providing details on the folder's content: Scripts_Figures Scripts_Figures/FigS1 Scripts_Figures/Fig1 Scripts_Figures/FigS4 Scripts_Figures/FigS3 Scripts_Figures/FigS2 Scripts_Figures/FigS5 Scripts_Figures/Fig2 Scripts_Figures/Fig3 Scripts_Figures/Fig3/Script Scripts_Figures/Fig3/Data Scripts_Figures/Fig3/Data/readme.txt Scripts_Figures/Fig3/Script/script_array_script.sh Scripts_Figures/Fig3/Script/simupop_size_change.py Scripts_Figures/Fig3/Script/readme.txt Scripts_Figures/Fig3/Script/plot_simupop.R Scripts_Figures/Fig2/Script Scripts_Figures/Fig2/Data Scripts_Figures/Fig2/Data/Network Scripts_Figures/Fig2/Data/Principal_Component _Analysis Scripts_Figures/Fig2/Data/Bayesian_clustering Scripts_Figures/Fig2/Data/Bayesian_clustering/myzip.zip Scripts_Figures/Fig2/Data/Bayesian_clustering/geo_group.txt Scripts_Figures/Fig2/Data/Bayesian_clustering/readme.txt Scripts_Figures/Fig2/Data/Principal_Component _Analysis/readme.txt Scripts_Figures/Fig2/Data/Principal_Component _Analysis/input_adegenet.txt Scripts_Figures/Fig2/Data/Network/black_sea_haplotype_with_KS.nex Scripts_Figures/Fig2/Data/Network/readme.txt Scripts_Figures/Fig2/Script/Network Scripts_Figures/Fig2/Script/Principal_Component _Analysis Scripts_Figures/Fig2/Script/Fig2 Scripts_Figures/Fig2/Script/Bayesian_clustering Scripts_Figures/Fig2/Script/Bayesian_clustering/readme.txt Scripts_Figures/Fig2/Script/Bayesian_clustering/Clumpak.sh Scripts_Figures/Fig2/Script/Fig2/readme.txt Scripts_Figures/Fig2/Script/Principal_Component _Analysis/PCA_script.R Scripts_Figures/Fig2/Script/Principal_Component _Analysis/readme.txt Scripts_Figures/Fig2/Script/Network/readme.txt Scripts_Figures/FigS5/Script Scripts_Figures/FigS5/Data Scripts_Figures/FigS5/Data/readme.txt Scripts_Figures/FigS5/Script/script_array_script.sh Scripts_Figures/FigS5/Script/simupop_size_change.py Scripts_Figures/FigS5/Script/readme.txt Scripts_Figures/FigS5/Script/plot_simupop.R Scripts_Figures/FigS2/Script Scripts_Figures/FigS2/Data Scripts_Figures/FigS2/Data/Bayesian_clustering_barplots Scripts_Figures/FigS2/Data/Likelihood_distribution Scripts_Figures/FigS2/Data/Likelihood_distribution/rawSummary.tab Scripts_Figures/FigS2/Data/Likelihood_distribution/readme.txt Scripts_Figures/FigS2/Data/Bayesian_clustering_barplots/myzip.zip Scripts_Figures/FigS2/Data/Bayesian_clustering_barplots/geo_group.txt Scripts_Figures/FigS2/Data/Bayesian_clustering_barplots/readme.txt Scripts_Figures/FigS2/Script/Structure_barplots Scripts_Figures/FigS2/Script/Likelihood_distribution Scripts_Figures/FigS2/Script/Fig_S2 Scripts_Figures/FigS2/Script/Fig_S2/readme.txt Scripts_Figures/FigS2/Script/Likelihood_distribution/STRH_plot_LnDvK.R Scripts_Figures/FigS2/Script/Likelihood_distribution/readme.txt Scripts_Figures/FigS2/Script/Structure_barplots/readme.txt Scripts_Figures/FigS2/Script/Structure_barplots/Clumpak.sh Scripts_Figures/FigS3/Script Scripts_Figures/FigS3/Data Scripts_Figures/FigS3/Data/readme.txt Scripts_Figures/FigS3/Data/input_adegenet.txt Scripts_Figures/FigS3/Script/DAPC_script.R Scripts_Figures/FigS3/Script/readme.txt Scripts_Figures/FigS4/Script Scripts_Figures/FigS4/Data Scripts_Figures/FigS4/Data/readme.txt Scripts_Figures/FigS4/Data/mtDNA_powsim_input_R.txt Scripts_Figures/FigS4/Data/microsatellite_powsim_input_R.txt Scripts_Figures/FigS4/Script/POWSIM_Fig_S4.R Scripts_Figures/FigS4/Script/readme.txt Scripts_Figures/Fig1/Script Scripts_Figures/Fig1/Data Scripts_Figures/Fig1/Data/readme.txt Scripts_Figures/Fig1/Data/marmap_coord_22;38;43;48_res_4.csv Scripts_Figures/Fig1/Data/geography_data_map.txt Scripts_Figures/Fig1/Script/map_script.R Scripts_Figures/Fig1/Script/readme.txt Scripts_Figures/FigS1/Script Scripts_Figures/FigS1/Data Scripts_Figures/FigS1/Data/related_input.txt Scripts_Figures/FigS1/Data/readme.txt Scripts_Figures/FigS1/Script/readme.txt Scripts_Figures/FigS1/Script/related_within_pop.R