This archive contains the following files:

filename                                              description
ABCloci_1000contigs_noIBDindividuals.arp              Arlequin project file used to calculate observed summary statistics for Approximate Bayesian Computation
ABCloci_1000contigs_noIBDinviduals_observedata.obs    observed summary statistics for Approximate Bayesian Computation
AGF.est                                               fastsimcoal prior distributions for AGF scenario
AGFRB.est                                             fastsimcoal prior distributions for AGFRB scenario
AGFRB.tpl                                             fastsimcoal simulation template file for AGFRB scenario
AGF.tpl                                               fastsimcoal simulation template file for AGF scenario
ArlquinFST_rubtex_maf05_noIBD_poplevel.arp            Arlequin project file for FST outlier detection
arl_run.ars                                           arlsumstat (Arlequin) settings for summary statistics calculation
BB.est                                                fastsimcoal prior distributions for BB scenario
BB.tpl                                                fastsimcoal simulation template file for BB scenario
CGF.est                                               fastsimcoal prior distributions for CGF scenario
CGF.tpl                                               fastsimcoal simulation template file for CGF scenario
DIV.est                                               fastsimcoal prior distributions for DIV scenario
DIV.tpl                                               fastsimcoal simulation template file for DIV scenario
rABC_postAnalyses.r                                   custom R script for ABC analyses
RB.est                                                fastsimcoal prior distributions for RB scenario
RB.tpl                                                fastsimcoal simulation template file for RB scenario
RGF.est                                               fastsimcoal prior distributions for RGF scenario
RGF.tpl                                               fastsimcoal simulation template file for RGF scenario
STRUCTURE_project_data_rub                            STRUCTURE project data for G. rubens
STRUCTURE_project_data_sppCombined                    STRUCTURE project data for species combined run
STRUCTURE_project_data_tex                            STRUCTURE project data for G. texensis
TB.est                                                fastsimcoal prior distributions for TB scenario
TB.tpl                                                fastsimcoal simulation template file for TB scenario
VCF_allIndividuals.recode.vcf                         Variants file for all individuals (40) including 8 potentially related pairs
VCF_noIBDindividuals.recode.vcf                       Variant file for 32 individuals after exluding one of each of the 8 potentially related pairs