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orthologous groups of genes in the H. melpomene and the H. erato transcriptomes
OrthoFinder was used to identify orthologous groups of genes in\nthe H. melpomene and the H. erato transcriptomes (options: -t\n48 -a 6). 1-1 orthologous gene sequences were selected for use in subsequent analysis (Supporting Information Table S2)
1_1_melpomene_erato_ortho.txt
divergence_autosomes
Calculation of diversity and selection\nstatistics for 1-1\northolog alignments between\nH. melpomene and H. erato
divergence_Z
Calculation of diversity and selection statistics for 1-1 ortholog alignments between H. melpomene and H. erato
polymorphism_autosomes
Calculation of diversity and selection statistics for 1-1 ortholog alignments between H. melpomene and H. erato
polymorphism_autosomes
Calculation of diversity and selection statistics for 1-1 ortholog alignments between H. melpomene and H. erato
polymorphism_Z.csv
results_heliconius-otherLeps
Overall results for calculation of diversity and selection\nstatistics for 1-1 ortholog alignments between\nH. melpomene and H. erato & other Leps for comparison
results_heliconius-1.csv
total_alignement_autosomes_heliconius
Calculation of diversity and selection statistics for 1-1 ortholog alignments between H. melpomene and H. erato
total_alignement_autosomes_heliconius
Calculation of diversity and selection statistics for 1-1 ortholog alignments between H. melpomene and H. erato
total_alignement_autosomes_heliconius
Calculation of diversity and selection statistics for 1-1 ortholog alignments between H. melpomene and H. erato
total_alignment_Z_heliconius
Calculation of diversity and selection statistics for 1-1 ortholog alignments between H. melpomene and H. erato
total_alignement_Z_heliconius.SFS_DoFE
total_alignment_Z_heliconius
Calculation of diversity and selection statistics for 1-1 ortholog alignments between H. melpomene and H. erato
total_alignement_Z_heliconius.SFS_sum
total_alignment_Z_heliconius
Calculation of diversity and selection statistics for 1-1 ortholog alignments between H. melpomene and H. erato
total_alignement_Z_heliconius.sum
", "type": { "id": "notes", "title": { "de": "Anmerkungen", "en": "Notes" } } } ], "creators": [ { "affiliations": [ { "name": "Princeton University" } ], "person_or_org": { "family_name": "Pinharanda", "given_name": "Ana", "name": "Pinharanda, Ana", "type": "personal" } }, { "affiliations": [ { "name": "University of Cambridge" } ], "person_or_org": { "family_name": "Rousselle", "given_name": "Marjolaine", "name": "Rousselle, Marjolaine", "type": "personal" } }, { "affiliations": [ { "name": "University of Cambridge" } ], "person_or_org": { "family_name": "Martin", "given_name": "Simon H.", "name": "Martin, Simon H.", "type": "personal" } }, { "affiliations": [ { "name": "University of Cambridge" } ], "person_or_org": { "family_name": "Hanly", "given_name": "Joseph J.", "name": "Hanly, Joseph J.", "type": "personal" } }, { "affiliations": [ { "name": "University of Cambridge" } ], "person_or_org": { "family_name": "Davey", "given_name": "John W.", "name": "Davey, John W.", "type": "personal" } }, { "affiliations": [ { "name": "University of Edinburgh" } ], "person_or_org": { "family_name": "Kumar", "given_name": "Sujai", "name": "Kumar, Sujai", "type": "personal" } }, { "affiliations": [ { "name": "Princeton University" } ], "person_or_org": { "family_name": "Galtier", "given_name": "Nicolas", "name": "Galtier, Nicolas", "type": "personal" } }, { "affiliations": [ { "name": "University of Cambridge" } ], "person_or_org": { "family_name": "Jiggins", "given_name": "Chris D.", "name": "Jiggins, Chris D.", "type": "personal" } } ], "description": "Sex chromosomes have different evolutionary properties compared to autosomes due to their hemizygous nature. In particular, recessive mutations are more readily exposed to selection, which can lead to faster rates of molecular evolution. Here, we report patterns of gene expression and molecular evolution for a group of butterflies. First, we improve the completeness of the Heliconius melpomene reference annotation, a neotropical butterfly with a ZW sex determination system. Then, we analyse RNA from male and female whole abdomens and sequence female ovary and gut tissue to identify sex and tissue specific gene expression profiles in H. melpomene. Using these expression profiles we compare: 1) sequence divergence and polymorphism; 2) the strength of positive and negative selection; and 3) rates of adaptive evolution, for Z and autosomal genes between two species of Heliconius butterflies, H. melpomene and H. erato. We show that the rate of adaptive substitutions is higher for Z than autosomal genes, but contrary to expectation, it is also higher for male biased than female biased genes. Additionally, we find no significant increase in the rate of adaptive evolution or purifying selection on genes expressed in ovary tissue, a heterogametic specific tissue. Our results contribute to a growing body of literature from other ZW systems that also provide mixed evidence for a fast-Z effect where hemizygosity influences the rate of adaptive substitutions.", "locations": { "features": [ { "place": "Central and South America" } ] }, "publication_date": "2018-12-19", "publisher": "Zenodo", "related_identifiers": [ { "identifier": "10.1111/jeb.13410", "relation_type": { "id": "iscitedby", "title": { "de": "Wird zitiert von", "en": "Is cited by" } }, "scheme": "doi" } ], "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "CC0 waives copyright interest in a work you've created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach." }, "icon": "cc-cc0-icon", "id": "cc0-1.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/publicdomain/zero/1.0/legalcode" }, "title": { "en": "Creative Commons Zero v1.0 Universal" } } ], "subjects": [ { "subject": "sex chromosomes" }, { "subject": "Heliconius" } ], "title": "Data from: Sexually dimorphic gene expression and transcriptome evolution provides mixed evidence for a fast\u2010Z effect in Heliconius" }, "parent": { "access": { "owned_by": { "user": "90070" } }, "communities": { "default": "734b6452-1f40-4db0-b218-08ab1d568b7f", "entries": [ { "access": { "member_policy": "open", "members_visibility": "public", "record_submission_policy": "open", "review_policy": "open", "visibility": "public" }, "children": { "allow": false }, "created": "2020-02-04T14:03:17.992421+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "id": "734b6452-1f40-4db0-b218-08ab1d568b7f", "links": {}, "metadata": { "curation_policy": "

The Dryad collection in Zenodo contains datasets mirrored from the Dryad Digital Repository. If you want your dataset to appear here, submit it through https://datadryad.org. No other datasets will be accepted.

", "description": "Dryad is an international open-access repository of research data, especially data underlying scientific and medical publications. Dryad is a curated general-purpose repository that makes data discoverable, freely reusable, and citable.", "organizations": [ { "id": "00x6h5n95" } ], "page": "

Dryad is a community-governed open data publishing and curation repository. Through Dryad and Zenodo's partnership, Zenodo hosts a preservation copy of Dryad datasets, available through this Zenodo Community. For more information or to access the original published datasets, visit https://datadryad.org.

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