nf-core/viralrecon v${version}
Run Name: $runName
<% if (!success) { out << """nf-core/viralrecon execution completed unsuccessfully!
The exit status of the task that caused the workflow execution to fail was: $exitStatus.
The full error message was:
${errorReport}
nf-core/viralrecon execution completed with warnings!
The pipeline finished successfully, but the following samples were skipped due to failing the minimum mapped read threshold (< ${min_mapped_reads}):
${fail_mapped_reads.sort().join('')}
nf-core/viralrecon execution completed successfully!
"""
}
%>
The workflow was completed at $dateComplete (duration: $duration)
The command used to launch the workflow was as follows:
$commandLine
Pipeline Configuration:
| $k | $v |
|---|
nf-core/viralrecon