AUXILIARY DATA FILES FOR
The chimerical genome of Isla del Coco feral pigs (Costa Rica), an isolated population since 1793 but with remarkable levels of diversity
E. Bianco, H.W. Soto, L. Vargas, M. Perez-Enciso
Molecular Ecology (in press)
2015-03-17

Contact
Miguel Perez-Enciso
miguel.perez@uab.es

The following files are included:

FILENAME		FORMAT	DESCRIPTION
60k.map.gz		Plink	map file of 60k array genotyping, complete dataset (411 individuals)
			Individual breed codes are in Table S1 and in Burgos-Paz et al (2013)
			For pruning, —indeed option was used.

60.ped.gz		Plink	ped file.

MT.CR.fas		Fasta	Aligned fasta files of control region in the biodiversity panel. New sequences 
			submitted to Genbank

MT.CR.samples.xlsx	xlsx	Samples sequenced for the control MT region

microsat.xlsx		xlsx	File with microsatellite genotypes. 

SSCY.fas.gz		fasta	Aligned fasta sequences from the 11 boars for SCCY BACs

SSCY.NJ.nwk		nwk	NJ SSCY tree in newick format as obtained with MEGA

sequence.map.gz		Plink	All variants obtained by shotgun sequencing of the 16 samples (Table 1)

sequence.ped.gz		Plink	ped file


MD5SUM
60k.map.gz  90bfa41e6b6b7221af78b0dedb73ed6d
60k.ped.gz  41a11fbaf625e4ba16d1150923caf35f
MT.CR.fas.gz  a6bf09b9042d83f2a8ee00a3a1e5f967
MT.CR.samples.xlsx  8cc2b373b3092a000097f67d6ce3839c
README.txt  4699ec4e53a30e1df7f1126b2e3e9d94
SSCY.NJ.nwk  f39058f7187359629d325777e43159e0
SSCY.fas.gz  dae1a27deeffc747e4ba3be5bb125ef9
microsat.xlsx  2afa0bb869af07130994f6a10c39c6dc
sequence.map.gz  2097a84c05fe46764ef8177c307baf04
sequence.ped.gz  0c0ef25fd22a4e7f0ec814b950a82d65