=========== Computer Code =========== Computer code used as part of this manuscript is available from: https://github.com/faircloth-lab/phyluce Specifically, a snapshot of code used within the manuscript is available from: https://github.com/faircloth-lab/phyluce/zipball/m1.0-final The m1.0-final tag represents manuscript1.0 version of the code, which corresponds to the following commit: https://github.com/faircloth-lab/phyluce/commit/3d6a8e95037b69b36ac9a3dc73ddc2d0fc01cd2a The steps we used to generate data sets used within the manuscript (using the code above) are available from: https://gist.github.com/11281de985a6f8722251