1M -12 19:42:57] Number of raw reads: 46343088 -12 19:42:57] Number of raw reads with CGG/TGG at 5' end: 41670023 -0.899 -12 19:42:57] Number of raw reads with tag CGG: 29634440 (0.639) -12 19:42:57] Number of raw reads with tag TGG: 12035583 (0.260) -12 19:42:57] Number of bases in total: 4585533197 -12 19:42:57] Number of reads are rejected because of multiple hit s: 15972 -12 19:42:57] Number of unique-hits reads (before post-filtering): 40604469 -12 19:42:57] ------ 34539445 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -12 19:42:57] Mappability= 74.5299% -12 19:42:57] Total bases of uniquely mapped reads 3417185491 -12 19:42:57] ---- 17273073 FW reads mapped to Watson strand -12 19:42:57] ---- 17266372 FW reads mapped to Crick strand -12 19:42:57] Total bases of uniquely mapped reads 3417185491 -12 19:42:57] ---------------------------------------------- -12 19:42:57] Methylated C in mapped reads -12 19:42:57] mCG 57.975% -12 19:42:57] mCHG 0.649% -12 19:42:57] mCHH 0.644% -12 19:42:57] ---------------------------------------------- -12 19:42:57] ------------------- END ---------------------- 1F -14 20:23:04] Number of raw reads: 31089004 -14 20:23:04] Number of raw reads with CGG/TGG at 5' end: 29189870 -0.939 -14 20:23:04] Number of raw reads with tag CGG: 21462507 (0.690) -14 20:23:04] Number of raw reads with tag TGG: 7727363 (0.249) -14 20:23:04] Number of bases in total: 3075700069 -14 20:23:04] Number of reads are rejected because of multiple hit s: 3697 -14 20:23:04] Number of unique-hits reads (before post-filtering): 27534370 -14 20:23:04] ------ 24026891 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -14 20:23:04] Mappability= 77.2842% -14 20:23:04] Total bases of uniquely mapped reads 2376926487 -14 20:23:04] ---- 12019650 FW reads mapped to Watson strand -14 20:23:04] ---- 12007241 FW reads mapped to Crick strand -14 20:23:04] Total bases of uniquely mapped reads 2376926487 -14 20:23:04] ---------------------------------------------- -14 20:23:04] Methylated C in mapped reads -14 20:23:04] mCG 61.127% -14 20:23:04] mCHG 0.647% -14 20:23:04] mCHH 0.649% -14 20:23:04] ---------------------------------------------- -14 20:23:04] ------------------- END ---------------------- 2M -16 02:39:56] Number of raw reads: 36713342 -16 02:39:56] Number of raw reads with CGG/TGG at 5' end: 34242743 -0.933 -16 02:39:56] Number of raw reads with tag CGG: 25060107 (0.683) -16 02:39:56] Number of raw reads with tag TGG: 9182636 (0.250) -16 02:39:56] Number of bases in total: 3631996125 -16 02:39:56] Number of reads are rejected because of multiple hit s: 29684 -16 02:39:56] Number of unique-hits reads (before post-filtering): 32388790 -16 02:39:56] ------ 28274334 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -16 02:39:56] Mappability= 77.0138% -16 02:39:56] Total bases of uniquely mapped reads 2797077970 -16 02:39:56] ---- 14156232 FW reads mapped to Watson strand -16 02:39:56] ---- 14118102 FW reads mapped to Crick strand -16 02:39:56] Total bases of uniquely mapped reads 2797077970 -16 02:39:56] ---------------------------------------------- -16 02:39:56] Methylated C in mapped reads -16 02:39:56] mCG 60.606% -16 02:39:56] mCHG 0.678% -16 02:39:56] mCHH 0.680% -16 02:39:56] ---------------------------------------------- -16 02:39:56] ------------------- END ---------------------- 2F -16 21:00:02] Number of raw reads: 35892977 -16 21:00:02] Number of raw reads with CGG/TGG at 5' end: 31979358 -0.891 -16 21:00:02] Number of raw reads with tag CGG: 23105163 (0.644) -16 21:00:02] Number of raw reads with tag TGG: 8874195 (0.247) -16 21:00:02] Number of bases in total: 3551723746 -16 21:00:02] Number of reads are rejected because of multiple hit s: 44119 -16 21:00:02] Number of unique-hits reads (before post-filtering): 31264198 -16 21:00:02] ------ 26573700 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -16 21:00:02] Mappability= 74.0359% -16 21:00:02] Total bases of uniquely mapped reads 2629195881 -16 21:00:02] ---- 13300932 FW reads mapped to Watson strand -16 21:00:02] ---- 13272768 FW reads mapped to Crick strand -16 21:00:02] Total bases of uniquely mapped reads 2629195881 -16 21:00:02] ---------------------------------------------- -16 21:00:02] Methylated C in mapped reads -16 21:00:02] mCG 58.487% -16 21:00:02] mCHG 0.636% -16 21:00:02] mCHH 0.632% -16 21:00:02] ---------------------------------------------- -16 21:00:02] ------------------- END ---------------------- 3F -17 06:02:10] Number of raw reads: 30002388 -17 06:02:10] Number of raw reads with CGG/TGG at 5' end: 27941713 -0.931 -17 06:02:10] Number of raw reads with tag CGG: 21294529 (0.710) -17 06:02:10] Number of raw reads with tag TGG: 6647184 (0.222) -17 06:02:10] Number of bases in total: 2967810485 -17 06:02:10] Number of reads are rejected because of multiple hit s: 130 -17 06:02:10] Number of unique-hits reads (before post-filtering): 26437513 -17 06:02:10] ------ 23098199 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -17 06:02:10] Mappability= 76.9879% -17 06:02:10] Total bases of uniquely mapped reads 2284766187 -17 06:02:10] ---- 11556785 FW reads mapped to Watson strand -17 06:02:10] ---- 11541414 FW reads mapped to Crick strand -17 06:02:10] Total bases of uniquely mapped reads 2284766187 -17 06:02:10] ---------------------------------------------- -17 06:02:10] Methylated C in mapped reads -17 06:02:10] mCG 63.304% -17 06:02:10] mCHG 0.670% -17 06:02:10] mCHH 0.669% -17 06:02:10] ---------------------------------------------- -17 06:02:10] ------------------- END ---------------------- 4F -30 18:10:28] Number of raw reads: 30130463 -30 18:10:28] Number of raw reads with CGG/TGG at 5' end: 28323348 -0.94 -30 18:10:28] Number of raw reads with tag CGG: 21053024 (0.699) -30 18:10:28] Number of raw reads with tag TGG: 7270324 (0.241) -30 18:10:28] Number of bases in total: 2980842293 -30 18:10:28] Number of reads are rejected because of multiple hit s: 5440 -30 18:10:28] Number of unique-hits reads (before post-filtering): 26739466 -30 18:10:28] ------ 23373069 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -30 18:10:28] Mappability= 77.5729% -30 18:10:28] Total bases of uniquely mapped reads 2312279709 -30 18:10:28] ---- 11698992 FW reads mapped to Watson strand -30 18:10:28] ---- 11674077 FW reads mapped to Crick strand -30 18:10:28] Total bases of uniquely mapped reads 2312279709 -30 18:10:28] ---------------------------------------------- -30 18:10:28] Methylated C in mapped reads -30 18:10:28] mCG 61.722% -30 18:10:28] mCHG 0.613% -30 18:10:28] mCHH 0.622% -30 18:10:28] ---------------------------------------------- -30 18:10:28] ------------------- END ---------------------- 3M -01 08:00:58] Number of raw reads: 45529388 -01 08:00:58] Number of raw reads with CGG/TGG at 5' end: 42798010 -0.94 -01 08:00:58] Number of raw reads with tag CGG: 30516443 (0.670) -01 08:00:58] Number of raw reads with tag TGG: 12281567 (0.270) -01 08:00:58] Number of bases in total: 4504329105 -01 08:00:58] Number of reads are rejected because of multiple hit s: 22230 -01 08:00:58] Number of unique-hits reads (before post-filtering): 40353963 -01 08:00:58] ------ 35165080 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -01 08:00:58] Mappability= 77.2360% -01 08:00:58] Total bases of uniquely mapped reads 3478867522 -01 08:00:58] ---- 17613766 FW reads mapped to Watson strand -01 08:00:58] ---- 17551314 FW reads mapped to Crick strand -01 08:00:58] Total bases of uniquely mapped reads 3478867522 -01 08:00:58] ---------------------------------------------- -01 08:00:58] Methylated C in mapped reads -01 08:00:58] mCG 59.298% -01 08:00:58] mCHG 0.625% -01 08:00:58] mCHH 0.635% -01 08:00:58] ---------------------------------------------- -01 08:00:58] ------------------- END ---------------------- 5F -09 00:13:46] Number of raw reads: 32104058 -09 00:13:46] Number of raw reads with CGG/TGG at 5' end: 30244794 -0.942 -09 00:13:46] Number of raw reads with tag CGG: 22296393 (0.695) -09 00:13:46] Number of raw reads with tag TGG: 7948401 (0.248) -09 00:13:46] Number of bases in total: 3176025888 -09 00:13:46] Number of reads are rejected because of multiple hit s: 4511 -09 00:13:46] Number of unique-hits reads (before post-filtering): 28388109 -09 00:13:46] ------ 24710597 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -09 00:13:46] Mappability= 76.9703% -09 00:13:46] Total bases of uniquely mapped reads 2444552177 -09 00:13:46] ---- 12375494 FW reads mapped to Watson strand -09 00:13:46] ---- 12335103 FW reads mapped to Crick strand -09 00:13:46] Total bases of uniquely mapped reads 2444552177 -09 00:13:46] ---------------------------------------------- -09 00:13:46] Methylated C in mapped reads -09 00:13:46] mCG 61.344% -09 00:13:46] mCHG 0.650% -09 00:13:46] mCHH 0.654% -09 00:13:46] ---------------------------------------------- -09 00:13:46] ------------------- END ---------------------- 4M -29 20:35:04] Number of raw reads: 38427369 -29 20:35:04] Number of raw reads with CGG/TGG at 5' end: 35756204 -0.93 -29 20:35:04] Number of raw reads with tag CGG: 26507310 (0.690) -29 20:35:04] Number of raw reads with tag TGG: 9248894 (0.241) -29 20:35:04] Number of bases in total: 3801092510 -29 20:35:04] Number of reads are rejected because of multiple hit s: 17734 -29 20:35:04] Number of unique-hits reads (before post-filtering): 33902544 -29 20:35:04] ------ 29747382 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -29 20:35:04] Mappability= 77.4120% -29 20:35:04] Total bases of uniquely mapped reads 2942458488 -29 20:35:04] ---- 14881254 FW reads mapped to Watson strand -29 20:35:04] ---- 14866128 FW reads mapped to Crick strand -29 20:35:04] Total bases of uniquely mapped reads 2942458488 -29 20:35:04] ---------------------------------------------- -29 20:35:04] Methylated C in mapped reads -29 20:35:04] mCG 61.837% -29 20:35:04] mCHG 0.676% -29 20:35:04] mCHH 0.671% -29 20:35:04] ---------------------------------------------- -29 20:35:04] ------------------- END ---------------------- 6F -06 04:24:17] Number of raw reads: 46831353 -06 04:24:17] Number of raw reads with CGG/TGG at 5' end: 43935535 -0.938 -06 04:24:17] Number of raw reads with tag CGG: 32299240 (0.690) -06 04:24:17] Number of raw reads with tag TGG: 11636295 (0.248) -06 04:24:17] Number of bases in total: 4633290229 -06 04:24:17] Number of reads are rejected because of multiple hit s: 34762 -06 04:24:17] Number of unique-hits reads (before post-filtering): 41412823 -06 04:24:17] ------ 36131532 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -06 04:24:17] Mappability= 77.1524% -06 04:24:17] Total bases of uniquely mapped reads 3574603082 -06 04:24:17] ---- 18082765 FW reads mapped to Watson strand -06 04:24:17] ---- 18048767 FW reads mapped to Crick strand -06 04:24:17] Total bases of uniquely mapped reads 3574603082 -06 04:24:17] ---------------------------------------------- -06 04:24:17] Methylated C in mapped reads -06 04:24:17] mCG 61.169% -06 04:24:17] mCHG 0.650% -06 04:24:17] mCHH 0.652% -06 04:24:17] ---------------------------------------------- -06 04:24:17] ------------------- END ---------------------- 7F -06 14:20:40] Number of raw reads: 33258944 -06 14:20:40] Number of raw reads with CGG/TGG at 5' end: 31331639 -0.942 -06 14:20:40] Number of raw reads with tag CGG: 23569778 (0.709) -06 14:20:40] Number of raw reads with tag TGG: 7761861 (0.233) -06 14:20:40] Number of bases in total: 3290311492 -06 14:20:40] Number of reads are rejected because of multiple hit s: 11245 -06 14:20:40] Number of unique-hits reads (before post-filtering): 29523211 -06 14:20:40] ------ 25888895 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -06 14:20:40] Mappability= 77.8404% -06 14:20:40] Total bases of uniquely mapped reads 2561071091 -06 14:20:40] ---- 12956684 FW reads mapped to Watson strand -06 14:20:40] ---- 12932211 FW reads mapped to Crick strand -06 14:20:40] Total bases of uniquely mapped reads 2561071091 -06 14:20:40] ---------------------------------------------- -06 14:20:40] Methylated C in mapped reads -06 14:20:40] mCG 62.389% -06 14:20:40] mCHG 0.614% -06 14:20:40] mCHH 0.613% -06 14:20:40] ---------------------------------------------- -06 14:20:40] ------------------- END ---------------------- 5M -08 09:08:59] Number of raw reads: 34127483 -08 09:08:59] Number of raw reads with CGG/TGG at 5' end: 31548215 -0.924 -08 09:08:59] Number of raw reads with tag CGG: 13650975 (0.400) -08 09:08:59] Number of raw reads with tag TGG: 17897240 (0.524) -08 09:08:59] Number of bases in total: 3374641064 -08 09:08:59] Number of reads are rejected because of multiple hit s: 5079 -08 09:08:59] Number of unique-hits reads (before post-filtering): 29954390 -08 09:08:59] ------ 26439425 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -08 09:08:59] Mappability= 77.4725% -08 09:08:59] Total bases of uniquely mapped reads 2614581863 -08 09:08:59] ---- 13226936 FW reads mapped to Watson strand -08 09:08:59] ---- 13212489 FW reads mapped to Crick strand -08 09:08:59] Total bases of uniquely mapped reads 2614581863 -08 09:08:59] ---------------------------------------------- -08 09:08:59] Methylated C in mapped reads -08 09:08:59] mCG 38.100% -08 09:08:59] mCHG 0.646% -08 09:08:59] mCHH 0.662% -08 09:08:59] ---------------------------------------------- -08 09:08:59] ------------------- END ---------------------- 6M -08 18:16:45] Number of raw reads: 31262442 -08 18:16:45] Number of raw reads with CGG/TGG at 5' end: 29340780 -0.939 -08 18:16:45] Number of raw reads with tag CGG: 22544445 (0.721) -08 18:16:45] Number of raw reads with tag TGG: 6796335 (0.217) -08 18:16:45] Number of bases in total: 3092966273 -08 18:16:45] Number of reads are rejected because of multiple hit s: 10891 -08 18:16:45] Number of unique-hits reads (before post-filtering): 27609350 -08 18:16:45] ------ 24153546 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -08 18:16:45] Mappability= 77.2606% -08 18:16:45] Total bases of uniquely mapped reads 2389625661 -08 18:16:45] ---- 12077481 FW reads mapped to Watson strand -08 18:16:45] ---- 12076065 FW reads mapped to Crick strand -08 18:16:45] Total bases of uniquely mapped reads 2389625661 -08 18:16:45] ---------------------------------------------- -08 18:16:45] Methylated C in mapped reads -08 18:16:45] mCG 64.032% -08 18:16:45] mCHG 0.637% -08 18:16:45] mCHH 0.642% -08 18:16:45] ---------------------------------------------- -08 18:16:45] ------------------- END ---------------------- 7M -10 05:25:45] Number of raw reads: 34264008 -10 05:25:45] Number of raw reads with CGG/TGG at 5' end: 31781451 -0.928 -10 05:25:45] Number of raw reads with tag CGG: 23381785 (0.682) -10 05:25:45] Number of raw reads with tag TGG: 8399666 (0.245) -10 05:25:45] Number of bases in total: 3389922965 -10 05:25:45] Number of reads are rejected because of multiple hit s: 11240 -10 05:25:45] Number of unique-hits reads (before post-filtering): 30204566 -10 05:25:45] ------ 26336849 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -10 05:25:45] Mappability= 76.8645% -10 05:25:45] Total bases of uniquely mapped reads 2605522736 -10 05:25:45] ---- 13184872 FW reads mapped to Watson strand -10 05:25:45] ---- 13151977 FW reads mapped to Crick strand -10 05:25:45] Total bases of uniquely mapped reads 2605522736 -10 05:25:45] ---------------------------------------------- -10 05:25:45] Methylated C in mapped reads -10 05:25:45] mCG 60.647% -10 05:25:45] mCHG 0.747% -10 05:25:45] mCHH 0.744% -10 05:25:45] ---------------------------------------------- -10 05:25:45] ------------------- END ---------------------- 8M -11 02:44:12] Number of raw reads: 71462677 -11 02:44:12] Number of raw reads with CGG/TGG at 5' end: 69704396 -0.975 -11 02:44:12] Number of raw reads with tag CGG: 50775531 (0.711) -11 02:44:12] Number of raw reads with tag TGG: 18928865 (0.265) -11 02:44:12] Number of bases in total: 7068055930 -11 02:44:12] Number of reads are rejected because of multiple hit s: 21735 -11 02:44:12] Number of unique-hits reads (before post-filtering): 63329230 -11 02:44:12] ------ 54048549 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -11 02:44:12] Mappability= 75.6319% -11 02:44:12] Total bases of uniquely mapped reads 5345452184 -11 02:44:12] ---- 27061284 FW reads mapped to Watson strand -11 02:44:12] ---- 26987265 FW reads mapped to Crick strand -11 02:44:12] Total bases of uniquely mapped reads 5345452184 -11 02:44:12] ---------------------------------------------- -11 02:44:12] Methylated C in mapped reads -11 02:44:12] mCG 59.099% -11 02:44:12] mCHG 0.511% -11 02:44:12] mCHH 0.493% -11 02:44:12] ---------------------------------------------- -11 02:44:12] ------------------- END ---------------------- 9M -14 21:15:55] Number of raw reads: 32184249 -14 21:15:55] Number of raw reads with CGG/TGG at 5' end: 30022388 -0.933 -14 21:15:55] Number of raw reads with tag CGG: 22224105 (0.691) -14 21:15:55] Number of raw reads with tag TGG: 7798283 (0.242) -14 21:15:55] Number of bases in total: 3184253871 -14 21:15:55] Number of reads are rejected because of multiple hit s: 7768 -14 21:15:55] Number of unique-hits reads (before post-filtering): 28485494 -14 21:15:55] ------ 24862724 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -14 21:15:55] Mappability= 77.2512% -14 21:15:55] Total bases of uniquely mapped reads 2459747367 -14 21:15:55] ---- 12439816 FW reads mapped to Watson strand -14 21:15:55] ---- 12422908 FW reads mapped to Crick strand -14 21:15:55] Total bases of uniquely mapped reads 2459747367 -14 21:15:55] ---------------------------------------------- -14 21:15:55] Methylated C in mapped reads -14 21:15:55] mCG 61.342% -14 21:15:55] mCHG 0.688% -14 21:15:55] mCHH 0.695% -14 21:15:55] ---------------------------------------------- -14 21:15:55] ------------------- END ---------------------- 8F -15 06:20:18] Number of raw reads: 31254941 -15 06:20:18] Number of raw reads with CGG/TGG at 5' end: 29338245 -0.939 -15 06:20:18] Number of raw reads with tag CGG: 21874146 (0.700) -15 06:20:18] Number of raw reads with tag TGG: 7464099 (0.239) -15 06:20:18] Number of bases in total: 3092361194 -15 06:20:18] Number of reads are rejected because of multiple hit s: 11257 -15 06:20:18] Number of unique-hits reads (before post-filtering): 27619293 -15 06:20:18] ------ 24045112 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -15 06:20:18] Mappability= 76.9322% -15 06:20:18] Total bases of uniquely mapped reads 2378896908 -15 06:20:18] ---- 12042232 FW reads mapped to Watson strand -15 06:20:18] ---- 12002880 FW reads mapped to Crick strand -15 06:20:18] Total bases of uniquely mapped reads 2378896908 -15 06:20:18] ---------------------------------------------- -15 06:20:18] Methylated C in mapped reads -15 06:20:18] mCG 62.054% -15 06:20:18] mCHG 0.650% -15 06:20:18] mCHH 0.660% -15 06:20:18] ---------------------------------------------- -15 06:20:18] ------------------- END ---------------------- 9F -17 00:15:42] Number of raw reads: 33503462 -17 00:15:42] Number of raw reads with CGG/TGG at 5' end: 31595859 -0.943 -17 00:15:42] Number of raw reads with tag CGG: 24110824 (0.720) -17 00:15:42] Number of raw reads with tag TGG: 7485035 (0.223) -17 00:15:42] Number of bases in total: 3314611800 -17 00:15:42] Number of reads are rejected because of multiple hit s: 21511 -17 00:15:42] Number of unique-hits reads (before post-filtering): 29641228 -17 00:15:42] ------ 25956371 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -17 00:15:42] Mappability= 77.4737% -17 00:15:42] Total bases of uniquely mapped reads 2567863459 -17 00:15:42] ---- 12987431 FW reads mapped to Watson strand -17 00:15:42] ---- 12968940 FW reads mapped to Crick strand -17 00:15:42] Total bases of uniquely mapped reads 2567863459 -17 00:15:42] ---------------------------------------------- -17 00:15:42] Methylated C in mapped reads -17 00:15:42] mCG 63.537% -17 00:15:42] mCHG 0.634% -17 00:15:42] mCHH 0.627% -17 00:15:42] ---------------------------------------------- -17 00:15:42] ------------------- END ---------------------- 10M -16 13:50:28] Number of raw reads: 35412976 -16 13:50:28] Number of raw reads with CGG/TGG at 5' end: 33288656 -0.94 -16 13:50:28] Number of raw reads with tag CGG: 23243858 (0.656) -16 13:50:28] Number of raw reads with tag TGG: 10044798 (0.284) -16 13:50:28] Number of bases in total: 3502530147 -16 13:50:28] Number of reads are rejected because of multiple hit s: 18199 -16 13:50:28] Number of unique-hits reads (before post-filtering): 31378410 -16 13:50:28] ------ 27225722 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -16 13:50:28] Mappability= 76.8806% -16 13:50:28] Total bases of uniquely mapped reads 2692859484 -16 13:50:28] ---- 13630573 FW reads mapped to Watson strand -16 13:50:28] ---- 13595149 FW reads mapped to Crick strand -16 13:50:28] Total bases of uniquely mapped reads 2692859484 -16 13:50:28] ---------------------------------------------- -16 13:50:28] Methylated C in mapped reads -16 13:50:28] mCG 57.260% -16 13:50:28] mCHG 0.653% -16 13:50:28] mCHH 0.646% -16 13:50:28] ---------------------------------------------- -16 13:50:28] ------------------- END ---------------------- 11M -18 15:22:00] Number of raw reads: 39499474 -18 15:22:00] Number of raw reads with CGG/TGG at 5' end: 36989468 -0.936 -18 15:22:00] Number of raw reads with tag CGG: 27433493 (0.695) -18 15:22:00] Number of raw reads with tag TGG: 9555975 (0.242) -18 15:22:00] Number of bases in total: 3907857340 -18 15:22:00] Number of reads are rejected because of multiple hit s: 21554 -18 15:22:00] Number of unique-hits reads (before post-filtering): 34996598 -18 15:22:00] ------ 30449339 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -18 15:22:00] Mappability= 77.0880% -18 15:22:00] Total bases of uniquely mapped reads 3012408190 -18 15:22:00] ---- 15247763 FW reads mapped to Watson strand -18 15:22:00] ---- 15201576 FW reads mapped to Crick strand -18 15:22:00] Total bases of uniquely mapped reads 3012408190 -18 15:22:00] ---------------------------------------------- -18 15:22:00] Methylated C in mapped reads -18 15:22:00] mCG 60.969% -18 15:22:00] mCHG 0.663% -18 15:22:00] mCHH 0.669% -18 15:22:00] ---------------------------------------------- -18 15:22:00] ------------------- END ---------------------- 12M -19 03:11:26] Number of raw reads: 41193296 -19 03:11:26] Number of raw reads with CGG/TGG at 5' end: 36300640 -0.881 -19 03:11:26] Number of raw reads with tag CGG: 25721218 (0.624) -19 03:11:26] Number of raw reads with tag TGG: 10579422 (0.257) -19 03:11:26] Number of bases in total: 4075542590 -19 03:11:26] Number of reads are rejected because of multiple hit s: 9405 -19 03:11:26] Number of unique-hits reads (before post-filtering): 35786575 -19 03:11:26] ------ 30350053 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -19 03:11:26] Mappability= 73.6772% -19 03:11:26] Total bases of uniquely mapped reads 3002313628 -19 03:11:26] ---- 15191829 FW reads mapped to Watson strand -19 03:11:26] ---- 15158224 FW reads mapped to Crick strand -19 03:11:26] Total bases of uniquely mapped reads 3002313628 -19 03:11:26] ---------------------------------------------- -19 03:11:26] Methylated C in mapped reads -19 03:11:26] mCG 57.282% -19 03:11:26] mCHG 0.669% -19 03:11:26] mCHH 0.666% -19 03:11:26] ---------------------------------------------- -19 03:11:26] ------------------- END ---------------------- 13M -20 19:31:56] Number of raw reads: 37107603 -20 19:31:56] Number of raw reads with CGG/TGG at 5' end: 32086792 -0.865 -20 19:31:56] Number of raw reads with tag CGG: 22561913 (0.608) -20 19:31:56] Number of raw reads with tag TGG: 9524879 (0.257) -20 19:31:56] Number of bases in total: 3707867683 -20 19:31:56] Number of reads are rejected because of multiple hit s: 6415 -20 19:31:56] Number of unique-hits reads (before post-filtering): 31766440 -20 19:31:56] ------ 26029965 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -20 19:31:56] Mappability= 70.1473% -20 19:31:56] Total bases of uniquely mapped reads 2600604662 -20 19:31:56] ---- 13000374 FW reads mapped to Watson strand -20 19:31:56] ---- 13029591 FW reads mapped to Crick strand -20 19:31:56] Total bases of uniquely mapped reads 2600604662 -20 19:31:56] ---------------------------------------------- -20 19:31:56] Methylated C in mapped reads -20 19:31:56] mCG 54.439% -20 19:31:56] mCHG 3.868% -20 19:31:56] mCHH 3.572% -20 19:31:56] ---------------------------------------------- -20 19:31:56] ------------------- END ---------------------- 14M -21 17:03:55] Number of raw reads: 74951944 -21 17:03:55] Number of raw reads with CGG/TGG at 5' end: 72877830 -0.972 -21 17:03:55] Number of raw reads with tag CGG: 53170005 (0.709) -21 17:03:55] Number of raw reads with tag TGG: 19707825 (0.263) -21 17:03:55] Number of bases in total: 7413627649 -21 17:03:55] Number of reads are rejected because of multiple hit s: 43134 -21 17:03:55] Number of unique-hits reads (before post-filtering): 66260458 -21 17:03:55] ------ 56423267 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -21 17:03:55] Mappability= 75.2793% -21 17:03:55] Total bases of uniquely mapped reads 5580566932 -21 17:03:55] ---- 28243031 FW reads mapped to Watson strand -21 17:03:55] ---- 28180236 FW reads mapped to Crick strand -21 17:03:55] Total bases of uniquely mapped reads 5580566932 -21 17:03:55] ---------------------------------------------- -21 17:03:55] Methylated C in mapped reads -21 17:03:55] mCG 59.475% -21 17:03:55] mCHG 0.533% -21 17:03:55] mCHH 0.511% -21 17:03:55] ---------------------------------------------- -21 17:03:55] ------------------- END ---------------------- 15M -22 19:53:02] Number of raw reads: 36301113 -22 19:53:02] Number of raw reads with CGG/TGG at 5' end: 34093729 -0.939 -22 19:53:02] Number of raw reads with tag CGG: 25019381 (0.689) -22 19:53:02] Number of raw reads with tag TGG: 9074348 (0.250) -22 19:53:02] Number of bases in total: 3591227909 -22 19:53:02] Number of reads are rejected because of multiple hit s: 12435 -22 19:53:02] Number of unique-hits reads (before post-filtering): 32144863 -22 19:53:02] ------ 28051875 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -22 19:53:02] Mappability= 77.2755% -22 19:53:02] Total bases of uniquely mapped reads 2775028697 -22 19:53:02] ---- 14033382 FW reads mapped to Watson strand -22 19:53:02] ---- 14018493 FW reads mapped to Crick strand -22 19:53:02] Total bases of uniquely mapped reads 2775028697 -22 19:53:02] ---------------------------------------------- -22 19:53:02] Methylated C in mapped reads -22 19:53:02] mCG 60.468% -22 19:53:02] mCHG 0.658% -22 19:53:02] mCHH 0.657% -22 19:53:02] ---------------------------------------------- -22 19:53:02] ------------------- END ---------------------- 16M -23 03:01:03] Number of raw reads: 24833719 -23 03:01:03] Number of raw reads with CGG/TGG at 5' end: 23098482 -0.93 -23 03:01:03] Number of raw reads with tag CGG: 17595691 (0.709) -23 03:01:03] Number of raw reads with tag TGG: 5502791 (0.222) -23 03:01:03] Number of bases in total: 2456866362 -23 03:01:03] Number of reads are rejected because of multiple hit s: 33058 -23 03:01:03] Number of unique-hits reads (before post-filtering): 21924061 -23 03:01:03] ------ 19197499 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -23 03:01:03] Mappability= 77.3042% -23 03:01:03] Total bases of uniquely mapped reads 1899230724 -23 03:01:03] ---- 9605092 FW reads mapped to Watson strand -23 03:01:03] ---- 9592407 FW reads mapped to Crick strand -23 03:01:03] Total bases of uniquely mapped reads 1899230724 -23 03:01:03] ---------------------------------------------- -23 03:01:03] Methylated C in mapped reads -23 03:01:03] mCG 63.263% -23 03:01:03] mCHG 0.661% -23 03:01:03] mCHH 0.666% -23 03:01:03] ---------------------------------------------- -23 03:01:03] ------------------- END ---------------------- 10F -24 03:04:48] Number of raw reads: 39804347 -24 03:04:48] Number of raw reads with CGG/TGG at 5' end: 37584544 -0.944 -24 03:04:48] Number of raw reads with tag CGG: 27389733 (0.688) -24 03:04:48] Number of raw reads with tag TGG: 10194811 (0.256) -24 03:04:48] Number of bases in total: 3938185748 -24 03:04:48] Number of reads are rejected because of multiple hit s: 34626 -24 03:04:48] Number of unique-hits reads (before post-filtering): 35128727 -24 03:04:48] ------ 30595177 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -24 03:04:48] Mappability= 76.8639% -24 03:04:48] Total bases of uniquely mapped reads 3026867741 -24 03:04:48] ---- 15297601 FW reads mapped to Watson strand -24 03:04:48] ---- 15297576 FW reads mapped to Crick strand -24 03:04:48] Total bases of uniquely mapped reads 3026867741 -24 03:04:48] ---------------------------------------------- -24 03:04:48] Methylated C in mapped reads -24 03:04:48] mCG 60.314% -24 03:04:48] mCHG 0.618% -24 03:04:48] mCHH 0.621% -24 03:04:48] ---------------------------------------------- -24 03:04:48] ------------------- END ---------------------- 11F -24 14:56:12] Number of raw reads: 35708742 -24 14:56:12] Number of raw reads with CGG/TGG at 5' end: 33519021 -0.939 -24 14:56:12] Number of raw reads with tag CGG: 25465597 (0.713) -24 14:56:12] Number of raw reads with tag TGG: 8053424 (0.226) -24 14:56:12] Number of bases in total: 3532665980 -24 14:56:12] Number of reads are rejected because of multiple hit s: 29538 -24 14:56:12] Number of unique-hits reads (before post-filtering): 31618908 -24 14:56:12] ------ 27723638 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -24 14:56:12] Mappability= 77.6382% -24 14:56:12] Total bases of uniquely mapped reads 2742620961 -24 14:56:12] ---- 13875355 FW reads mapped to Watson strand -24 14:56:12] ---- 13848283 FW reads mapped to Crick strand -24 14:56:12] Total bases of uniquely mapped reads 2742620961 -24 14:56:12] ---------------------------------------------- -24 14:56:12] Methylated C in mapped reads -24 14:56:12] mCG 63.294% -24 14:56:12] mCHG 0.615% -24 14:56:12] mCHH 0.623% -24 14:56:12] ---------------------------------------------- -24 14:56:12] ------------------- END ---------------------- 12F -28 12:05:56] Number of raw reads: 37379707 -28 12:05:56] Number of raw reads with CGG/TGG at 5' end: 35022897 -0.937 -28 12:05:56] Number of raw reads with tag CGG: 25548536 (0.683) -28 12:05:56] Number of raw reads with tag TGG: 9474361 (0.253) -28 12:05:56] Number of bases in total: 3698368101 -28 12:05:56] Number of reads are rejected because of multiple hit s: 16964 -28 12:05:56] Number of unique-hits reads (before post-filtering): 32894129 -28 12:05:56] ------ 28528920 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -28 12:05:56] Mappability= 76.3219% -28 12:05:56] Total bases of uniquely mapped reads 2822481243 -28 12:05:56] ---- 14301367 FW reads mapped to Watson strand -28 12:05:56] ---- 14227553 FW reads mapped to Crick strand -28 12:05:56] Total bases of uniquely mapped reads 2822481243 -28 12:05:56] ---------------------------------------------- -28 12:05:56] Methylated C in mapped reads -28 12:05:56] mCG 59.880% -28 12:05:56] mCHG 0.667% -28 12:05:56] mCHH 0.675% -28 12:05:56] ---------------------------------------------- -28 12:05:56] ------------------- END ---------------------- 17M -29 02:51:23] Number of raw reads: 47941924 -29 02:51:23] Number of raw reads with CGG/TGG at 5' end: 43247925 -0.902 -29 02:51:23] Number of raw reads with tag CGG: 30986057 (0.646) -29 02:51:23] Number of raw reads with tag TGG: 12261868 (0.256) -29 02:51:23] Number of bases in total: 4744346445 -29 02:51:23] Number of reads are rejected because of multiple hit s: 43123 -29 02:51:23] Number of unique-hits reads (before post-filtering): 42184472 -29 02:51:23] ------ 35876458 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -29 02:51:23] Mappability= 74.8332% -29 02:51:23] Total bases of uniquely mapped reads 3549769692 -29 02:51:23] ---- 17963314 FW reads mapped to Watson strand -29 02:51:23] ---- 17913144 FW reads mapped to Crick strand -29 02:51:23] Total bases of uniquely mapped reads 3549769692 -29 02:51:23] ---------------------------------------------- -29 02:51:23] Methylated C in mapped reads -29 02:51:23] mCG 57.917% -29 02:51:23] mCHG 0.621% -29 02:51:23] mCHH 0.622% -29 02:51:23] ---------------------------------------------- -29 02:51:23] ------------------- END ---------------------- 18M -30 13:10:42] Number of raw reads: 38388640 -30 13:10:42] Number of raw reads with CGG/TGG at 5' end: 32268264 -0.841 -30 13:10:42] Number of raw reads with tag CGG: 22418709 (0.584) -30 13:10:42] Number of raw reads with tag TGG: 9849555 (0.257) -30 13:10:42] Number of bases in total: 3831070655 -30 13:10:42] Number of reads are rejected because of multiple hit s: 22953 -30 13:10:42] Number of unique-hits reads (before post-filtering): 32575324 -30 13:10:42] ------ 26598910 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -30 13:10:42] Mappability= 69.2885% -30 13:10:42] Total bases of uniquely mapped reads 2653958497 -30 13:10:42] ---- 13294256 FW reads mapped to Watson strand -30 13:10:42] ---- 13304654 FW reads mapped to Crick strand -30 13:10:42] Total bases of uniquely mapped reads 2653958497 -30 13:10:42] ---------------------------------------------- -30 13:10:42] Methylated C in mapped reads -30 13:10:42] mCG 53.448% -30 13:10:42] mCHG 3.604% -30 13:10:42] mCHH 3.320% -30 13:10:42] ---------------------------------------------- -30 13:10:42] ------------------- END ---------------------- 13F -31 00:32:52] Number of raw reads: 39594668 -31 00:32:52] Number of raw reads with CGG/TGG at 5' end: 37370189 -0.944 -31 00:32:52] Number of raw reads with tag CGG: 27056054 (0.683) -31 00:32:52] Number of raw reads with tag TGG: 10314135 (0.260) -31 00:32:52] Number of bases in total: 3917458415 -31 00:32:52] Number of reads are rejected because of multiple hit s: 26331 -31 00:32:52] Number of unique-hits reads (before post-filtering): 35026248 -31 00:32:52] ------ 30475800 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -31 00:32:52] Mappability= 76.9695% -31 00:32:52] Total bases of uniquely mapped reads 3014960767 -31 00:32:52] ---- 15268290 FW reads mapped to Watson strand -31 00:32:52] ---- 15207510 FW reads mapped to Crick strand -31 00:32:52] Total bases of uniquely mapped reads 3014960767 -31 00:32:52] ---------------------------------------------- -31 00:32:52] Methylated C in mapped reads -31 00:32:52] mCG 59.619% -31 00:32:52] mCHG 0.633% -31 00:32:52] mCHH 0.632% -31 00:32:52] ---------------------------------------------- -31 00:32:52] ------------------- END ---------------------- 19M -09 11:05:36] Number of raw reads: 36697953 -09 11:05:36] Number of raw reads with CGG/TGG at 5' end: 34358213 -0.936 -09 11:05:36] Number of raw reads with tag CGG: 24975906 (0.681) -09 11:05:36] Number of raw reads with tag TGG: 9382307 (0.256) -09 11:05:36] Number of bases in total: 3631046901 -09 11:05:36] Number of reads are rejected because of multiple hit s: 29806 -09 11:05:36] Number of unique-hits reads (before post-filtering): 32521744 -09 11:05:36] ------ 28330998 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -09 11:05:36] Mappability= 77.2005% -09 11:05:36] Total bases of uniquely mapped reads 2803050542 -09 11:05:36] ---- 14178218 FW reads mapped to Watson strand -09 11:05:36] ---- 14152780 FW reads mapped to Crick strand -09 11:05:36] Total bases of uniquely mapped reads 2803050542 -09 11:05:36] ---------------------------------------------- -09 11:05:36] Methylated C in mapped reads -09 11:05:36] mCG 60.110% -09 11:05:36] mCHG 0.658% -09 11:05:36] mCHH 0.658% -09 11:05:36] ---------------------------------------------- -09 11:05:36] ------------------- END ---------------------- 14F -31 22:11:59] Number of raw reads: 41459149 -31 22:11:59] Number of raw reads with CGG/TGG at 5' end: 35233853 -0.85 -31 22:11:59] Number of raw reads with tag CGG: 25253331 (0.609) -31 22:11:59] Number of raw reads with tag TGG: 9980522 (0.241) -31 22:11:59] Number of bases in total: 4142329058 -31 22:11:59] Number of reads are rejected because of multiple hit s: 27130 -31 22:11:59] Number of unique-hits reads (before post-filtering): 35379380 -31 22:11:59] ------ 28825273 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -31 22:11:59] Mappability= 69.5269% -31 22:11:59] Total bases of uniquely mapped reads 2879526428 -31 22:11:59] ---- 14406679 FW reads mapped to Watson strand -31 22:11:59] ---- 14418594 FW reads mapped to Crick strand -31 22:11:59] Total bases of uniquely mapped reads 2879526428 -31 22:11:59] ---------------------------------------------- -31 22:11:59] Methylated C in mapped reads -31 22:11:59] mCG 57.115% -31 22:11:59] mCHG 11.924% -31 22:11:59] mCHH 11.421% -31 22:11:59] ---------------------------------------------- -31 22:11:59] ------------------- END ---------------------- 15F -01 10:11:19] Number of raw reads: 42825332 -01 10:11:19] Number of raw reads with CGG/TGG at 5' end: 36876671 -0.861 -01 10:11:19] Number of raw reads with tag CGG: 27008607 (0.631) -01 10:11:19] Number of raw reads with tag TGG: 9868064 (0.230) -01 10:11:19] Number of bases in total: 4278047141 -01 10:11:19] Number of reads are rejected because of multiple hit s: 46518 -01 10:11:19] Number of unique-hits reads (before post-filtering): 36791747 -01 10:11:19] ------ 30011446 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -01 10:11:19] Mappability= 70.0787% -01 10:11:19] Total bases of uniquely mapped reads 2997214385 -01 10:11:19] ---- 15033209 FW reads mapped to Watson strand -01 10:11:19] ---- 14978237 FW reads mapped to Crick strand -01 10:11:19] Total bases of uniquely mapped reads 2997214385 -01 10:11:19] ---------------------------------------------- -01 10:11:19] Methylated C in mapped reads -01 10:11:19] mCG 58.514% -01 10:11:19] mCHG 14.132% -01 10:11:19] mCHH 13.711% -01 10:11:19] ---------------------------------------------- -01 10:11:19] ------------------- END ---------------------- 16F -07 21:40:58] Number of raw reads: 50010540 -07 21:40:58] Number of raw reads with CGG/TGG at 5' end: 41251088 -0.825 -07 21:40:58] Number of raw reads with tag CGG: 30817856 (0.616) -07 21:40:58] Number of raw reads with tag TGG: 10433232 (0.209) -07 21:40:58] Number of bases in total: 4991625797 -07 21:40:58] Number of reads are rejected because of multiple hit s: 100 -07 21:40:58] Number of unique-hits reads (before post-filtering): 29081887 -07 21:40:58] ------ 23908222 uniquely aligned reads, passed fragm ent check, with mismatches <= 4 -07 21:40:58] Mappability= 47.8064% -07 21:40:58] Total bases of uniquely mapped reads 2385603656 -07 21:40:58] ---- 11968111 FW reads mapped to Watson strand -07 21:40:58] ---- 11940111 FW reads mapped to Crick strand -07 21:40:58] Total bases of uniquely mapped reads 2385603656 -07 21:40:58] ---------------------------------------------- -07 21:40:58] Methylated C in mapped reads -07 21:40:58] mCG 63.304% -07 21:40:58] mCHG 16.567% -07 21:40:58] mCHH 16.235% -07 21:40:58] ---------------------------------------------- -07 21:40:58] ------------------- END ---------------------- AFGH_1 Number of raw reads: 58235583 Number of raw reads with CGG/TGG at 5' end: 27564526 Number of raw reads with tag CGG: 17957576 (0.308) Number of raw reads with tag TGG: 9606950 (0.165) Number of bases in total: 5803557096 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 33320943 uniquely aligned reads, passed fragm Mappability= 57.2175% Total bases of uniquely mapped reads 3321399422 ---- 16641038 FW reads mapped to Watson strand ---- 16679905 FW reads mapped to Crick strand Total bases of uniquely mapped reads 3321399422 ---------------------------------------------- Methylated C in mapped reads mCG 53.068% mCHG 6.432% mCHH 5.923% ---------------------------------------------- ------------------- END ---------------------- AFGH_2 Number of raw reads: 20462480 Number of raw reads with CGG/TGG at 5' end: 17539402 Number of raw reads with tag CGG: 12875125 (0.629) Number of raw reads with tag TGG: 4664277 (0.228) Number of bases in total: 2042065682 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 15092949 uniquely aligned reads, passed fragm Mappability= 73.7591% Total bases of uniquely mapped reads 1506326976 ---- 7555340 FW reads mapped to Watson strand ---- 7537609 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1506326976 ---------------------------------------------- Methylated C in mapped reads mCG 59.838% mCHG 1.213% mCHH 1.204% ---------------------------------------------- ------------------- END ---------------------- AFGH_3 Number of raw reads: 24553541 Number of raw reads with CGG/TGG at 5' end: 23211449 Number of raw reads with tag CGG: 17050253 (0.694) Number of raw reads with tag TGG: 6161196 (0.251) Number of bases in total: 2452490647 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 18453071 uniquely aligned reads, passed fragm Mappability= 75.1544% Total bases of uniquely mapped reads 1842976080 ---- 9236053 FW reads mapped to Watson strand ---- 9217018 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1842976080 ---------------------------------------------- Methylated C in mapped reads mCG 60.135% mCHG 0.766% mCHH 0.741% ---------------------------------------------- ------------------- END ---------------------- AKIT_1 Number of raw reads: 30408202 Number of raw reads with CGG/TGG at 5' end: 20656276 Number of raw reads with tag CGG: 15502737 (0.510) Number of raw reads with tag TGG: 5153539 (0.169) Number of bases in total: 3033078195 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 19524713 uniquely aligned reads, passed fragm Mappability= 64.2087% Total bases of uniquely mapped reads 1947781017 ---- 9762182 FW reads mapped to Watson strand ---- 9762531 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1947781017 ---------------------------------------------- Methylated C in mapped reads mCG 57.222% mCHG 2.533% mCHH 2.364% ---------------------------------------------- ------------------- END ---------------------- AKIT_2 Number of raw reads: 29535014 Number of raw reads with CGG/TGG at 5' end: 18963441 Number of raw reads with tag CGG: 13644498 (0.462) Number of raw reads with tag TGG: 5318943 (0.180) Number of bases in total: 2946841722 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 19403711 uniquely aligned reads, passed fragm Mappability= 65.6973% Total bases of uniquely mapped reads 1936487286 ---- 9698309 FW reads mapped to Watson strand ---- 9705402 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1936487286 ---------------------------------------------- Methylated C in mapped reads mCG 56.786% mCHG 1.069% mCHH 1.047% ---------------------------------------------- ------------------- END ---------------------- AKIT_3 Number of raw reads: 36100039 Number of raw reads with CGG/TGG at 5' end: 20208801 Number of raw reads with tag CGG: 14858118 (0.412) Number of raw reads with tag TGG: 5350683 (0.148) Number of bases in total: 3597301652 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 21693169 uniquely aligned reads, passed fragm Mappability= 60.0918% Total bases of uniquely mapped reads 2162260209 ---- 10835786 FW reads mapped to Watson strand ---- 10857383 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2162260209 ---------------------------------------------- Methylated C in mapped reads mCG 55.196% mCHG 0.921% mCHH 0.890% ---------------------------------------------- ------------------- END ---------------------- AKIT_4 Number of raw reads: 21122026 Number of raw reads with CGG/TGG at 5' end: 19505173 Number of raw reads with tag CGG: 13649806 (0.646) Number of raw reads with tag TGG: 5855367 (0.277) Number of bases in total: 2104375041 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 15562317 uniquely aligned reads, passed fragm Mappability= 73.6781% Total bases of uniquely mapped reads 1549938273 ---- 7794682 FW reads mapped to Watson strand ---- 7767635 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1549938273 ---------------------------------------------- Methylated C in mapped reads mCG 58.052% mCHG 0.968% mCHH 0.908% ---------------------------------------------- ------------------- END ---------------------- BASS_1 Number of raw reads: 36063147 Number of raw reads with CGG/TGG at 5' end: 20961505 Number of raw reads with tag CGG: 15393732 (0.427) Number of raw reads with tag TGG: 5567773 (0.154) Number of bases in total: 3594343725 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 21768829 uniquely aligned reads, passed fragm Mappability= 60.3631% Total bases of uniquely mapped reads 2169985266 ---- 10886711 FW reads mapped to Watson strand ---- 10882118 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2169985266 ---------------------------------------------- Methylated C in mapped reads mCG 54.374% mCHG 5.714% mCHH 5.291% ---------------------------------------------- ------------------- END ---------------------- BASS_2 Number of raw reads: 21094856 Number of raw reads with CGG/TGG at 5' end: 18757003 Number of raw reads with tag CGG: 13904786 (0.659) Number of raw reads with tag TGG: 4852217 (0.230) Number of bases in total: 2105191408 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 15917957 uniquely aligned reads, passed fragm Mappability= 75.4590% Total bases of uniquely mapped reads 1588417273 ---- 7979756 FW reads mapped to Watson strand ---- 7938201 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1588417273 ---------------------------------------------- Methylated C in mapped reads mCG 60.467% mCHG 0.926% mCHH 0.913% ---------------------------------------------- ------------------- END ---------------------- BORZ_1 Number of raw reads: 32944271 Number of raw reads with CGG/TGG at 5' end: 22731449 Number of raw reads with tag CGG: 16873327 (0.512) Number of raw reads with tag TGG: 5858122 (0.178) Number of bases in total: 3285346535 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 22445749 uniquely aligned reads, passed fragm Mappability= 68.1325% Total bases of uniquely mapped reads 2239066812 ---- 11229504 FW reads mapped to Watson strand ---- 11216245 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2239066812 ---------------------------------------------- Methylated C in mapped reads mCG 59.356% mCHG 2.716% mCHH 2.642% ---------------------------------------------- ------------------- END ---------------------- BORZ_2 Number of raw reads: 22774244 Number of raw reads with CGG/TGG at 5' end: 20375670 Number of raw reads with tag CGG: 14520399 (0.638) Number of raw reads with tag TGG: 5855271 (0.257) Number of bases in total: 2267901704 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 17578562 uniquely aligned reads, passed fragm Mappability= 77.1861% Total bases of uniquely mapped reads 1749909193 ---- 8821855 FW reads mapped to Watson strand ---- 8756707 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1749909193 ---------------------------------------------- Methylated C in mapped reads mCG 58.097% mCHG 2.650% mCHH 2.602% ---------------------------------------------- ------------------- END ---------------------- BOX_1 Number of raw reads: 37622493 Number of raw reads with CGG/TGG at 5' end: 20328059 Number of raw reads with tag CGG: 14939420 (0.397) Number of raw reads with tag TGG: 5388639 (0.143) Number of bases in total: 3747836808 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 23095601 uniquely aligned reads, passed fragm Mappability= 61.3877% Total bases of uniquely mapped reads 2301224120 ---- 11541713 FW reads mapped to Watson strand ---- 11553888 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2301224120 ---------------------------------------------- Methylated C in mapped reads mCG 55.871% mCHG 1.031% mCHH 0.993% ---------------------------------------------- ------------------- END ---------------------- BOX_2 Number of raw reads: 27898654 Number of raw reads with CGG/TGG at 5' end: 21150224 Number of raw reads with tag CGG: 11936067 (0.428) Number of raw reads with tag TGG: 9214157 (0.330) Number of bases in total: 2782396807 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 17698847 uniquely aligned reads, passed fragm Mappability= 63.4398% Total bases of uniquely mapped reads 1764803061 ---- 8861434 FW reads mapped to Watson strand ---- 8837413 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1764803061 ---------------------------------------------- Methylated C in mapped reads mCG 52.700% mCHG 0.871% mCHH 0.875% ---------------------------------------------- ------------------- END ---------------------- BOX_3 Number of raw reads: 35495965 Number of raw reads with CGG/TGG at 5' end: 25303275 Number of raw reads with tag CGG: 18463055 (0.520) Number of raw reads with tag TGG: 6840220 (0.193) Number of bases in total: 3536333177 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 23828917 uniquely aligned reads, passed fragm Mappability= 67.1313% Total bases of uniquely mapped reads 2373637006 ---- 11933282 FW reads mapped to Watson strand ---- 11895635 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2373637006 ---------------------------------------------- Methylated C in mapped reads mCG 55.529% mCHG 0.947% mCHH 0.894% ---------------------------------------------- ------------------- END ---------------------- BOX_4 Number of raw reads: 24024219 Number of raw reads with CGG/TGG at 5' end: 22821857 Number of raw reads with tag CGG: 16518537 (0.688) Number of raw reads with tag TGG: 6303320 (0.262) Number of bases in total: 2399596326 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 18632701 uniquely aligned reads, passed fragm Mappability= 77.5580% Total bases of uniquely mapped reads 1860766305 ---- 9333215 FW reads mapped to Watson strand ---- 9299486 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1860766305 ---------------------------------------------- Methylated C in mapped reads mCG 59.405% mCHG 0.670% mCHH 0.654% ---------------------------------------------- ------------------- END ---------------------- BOZ_1 Number of raw reads: 31428356 Number of raw reads with CGG/TGG at 5' end: 29663364 Number of raw reads with tag CGG: 24775640 (0.788) Number of raw reads with tag TGG: 4887724 (0.156) Number of bases in total: 3138919834 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 23625223 uniquely aligned reads, passed fragm Mappability= 75.1717% Total bases of uniquely mapped reads 2359631340 ---- 11819884 FW reads mapped to Watson strand ---- 11805339 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2359631340 ---------------------------------------------- Methylated C in mapped reads mCG 72.610% mCHG 28.918% mCHH 28.133% ---------------------------------------------- ------------------- END ---------------------- BOZ_2 Number of raw reads: 35054269 Number of raw reads with CGG/TGG at 5' end: 33174855 Number of raw reads with tag CGG: 25248893 (0.720) Number of raw reads with tag TGG: 7925962 (0.226) Number of bases in total: 3500484173 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 26480550 uniquely aligned reads, passed fragm Mappability= 75.5416% Total bases of uniquely mapped reads 2643935312 ---- 13289604 FW reads mapped to Watson strand ---- 13190946 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2643935312 ---------------------------------------------- Methylated C in mapped reads mCG 63.444% mCHG 13.268% mCHH 12.769% ---------------------------------------------- ------------------- END ---------------------- BSJI_1 Number of raw reads: 34343362 Number of raw reads with CGG/TGG at 5' end: 30658028 Number of raw reads with tag CGG: 20895677 (0.608) Number of raw reads with tag TGG: 9762351 (0.284) Number of bases in total: 3430817214 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 23600412 uniquely aligned reads, passed fragm Mappability= 68.7190% Total bases of uniquely mapped reads 2357416729 ---- 11800188 FW reads mapped to Watson strand ---- 11800224 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2357416729 ---------------------------------------------- Methylated C in mapped reads mCG 55.297% mCHG 0.898% mCHH 0.903% ---------------------------------------------- ------------------- END ---------------------- BSJI_2 Number of raw reads: 20136444 Number of raw reads with CGG/TGG at 5' end: 18659000 Number of raw reads with tag CGG: 14514524 (0.721) Number of raw reads with tag TGG: 4144476 (0.206) Number of bases in total: 2009408491 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 15584423 uniquely aligned reads, passed fragm Mappability= 77.3941% Total bases of uniquely mapped reads 1555220557 ---- 7799851 FW reads mapped to Watson strand ---- 7784572 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1555220557 ---------------------------------------------- Methylated C in mapped reads mCG 65.504% mCHG 12.530% mCHH 12.020% ---------------------------------------------- ------------------- END ---------------------- BSJI_3 Number of raw reads: 22476841 Number of raw reads with CGG/TGG at 5' end: 19460674 Number of raw reads with tag CGG: 14534546 (0.647) Number of raw reads with tag TGG: 4926128 (0.219) Number of bases in total: 2244440318 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 16299165 uniquely aligned reads, passed fragm Mappability= 72.5154% Total bases of uniquely mapped reads 1627632681 ---- 8159609 FW reads mapped to Watson strand ---- 8139556 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1627632681 ---------------------------------------------- Methylated C in mapped reads mCG 60.786% mCHG 1.113% mCHH 1.064% ---------------------------------------------- ------------------- END ---------------------- CHCR_1 Number of raw reads: 29858999 Number of raw reads with CGG/TGG at 5' end: 27370127 Number of raw reads with tag CGG: 20484379 (0.686) Number of raw reads with tag TGG: 6885748 (0.231) Number of bases in total: 2982308016 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 21515399 uniquely aligned reads, passed fragm Mappability= 72.0567% Total bases of uniquely mapped reads 2149055977 ---- 10765227 FW reads mapped to Watson strand ---- 10750172 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2149055977 ---------------------------------------------- Methylated C in mapped reads mCG 61.837% mCHG 4.304% mCHH 4.276% ---------------------------------------------- ------------------- END ---------------------- CHCR_2 Number of raw reads: 36633987 Number of raw reads with CGG/TGG at 5' end: 34697183 Number of raw reads with tag CGG: 25303656 (0.691) Number of raw reads with tag TGG: 9393527 (0.256) Number of bases in total: 3655956085 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 27554471 uniquely aligned reads, passed fragm Mappability= 75.2156% Total bases of uniquely mapped reads 2749197607 ---- 13814682 FW reads mapped to Watson strand ---- 13739789 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2749197607 ---------------------------------------------- Methylated C in mapped reads mCG 59.427% mCHG 5.413% mCHH 5.003% ---------------------------------------------- ------------------- END ---------------------- DINGO_1 Number of raw reads: 26788600 Number of raw reads with CGG/TGG at 5' end: 24936236 Number of raw reads with tag CGG: 15434987 (0.576) Number of raw reads with tag TGG: 9501249 (0.355) Number of bases in total: 2671062971 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 19323879 uniquely aligned reads, passed fragm Mappability= 72.1347% Total bases of uniquely mapped reads 1925839886 ---- 9686116 FW reads mapped to Watson strand ---- 9637763 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1925839886 ---------------------------------------------- Methylated C in mapped reads mCG 48.380% mCHG 4.013% mCHH 3.693% ---------------------------------------------- ------------------- END ---------------------- DINGO_2 Number of raw reads: 34320364 Number of raw reads with CGG/TGG at 5' end: 32096972 Number of raw reads with tag CGG: 19601411 (0.571) Number of raw reads with tag TGG: 12495561 (0.364) Number of bases in total: 3410129725 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 26027449 uniquely aligned reads, passed fragm Mappability= 75.8368% Total bases of uniquely mapped reads 2584264871 ---- 13060135 FW reads mapped to Watson strand ---- 12967314 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2584264871 ---------------------------------------------- Methylated C in mapped reads mCG 49.193% mCHG 5.956% mCHH 5.583% ---------------------------------------------- ------------------- END ---------------------- ESSP1 Number of raw reads: 22760078 Number of raw reads with CGG/TGG at 5' end: 20275883 Number of raw reads with tag CGG: 14528865 (0.638) Number of raw reads with tag TGG: 5747018 (0.253) Number of bases in total: 2272324754 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 16275134 uniquely aligned reads, passed fragm Mappability= 71.5074% Total bases of uniquely mapped reads 1624714000 ---- 8142774 FW reads mapped to Watson strand ---- 8132360 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1624714000 ---------------------------------------------- Methylated C in mapped reads mCG 58.697% mCHG 0.982% mCHH 0.972% ---------------------------------------------- ------------------- END ---------------------- HUSK_1 Number of raw reads: 23195120 Number of raw reads with CGG/TGG at 5' end: 15048445 Number of raw reads with tag CGG: 10147127 (0.437) Number of raw reads with tag TGG: 4901318 (0.211) Number of bases in total: 2297965272 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 14739137 uniquely aligned reads, passed fragm Mappability= 63.5441% Total bases of uniquely mapped reads 1460389486 ---- 7381008 FW reads mapped to Watson strand ---- 7358129 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1460389486 ---------------------------------------------- Methylated C in mapped reads mCG 58.675% mCHG 10.957% mCHH 10.019% ---------------------------------------------- ------------------- END ---------------------- LAB_1 Number of raw reads: 24283958 Number of raw reads with CGG/TGG at 5' end: 15247030 Number of raw reads with tag CGG: 11597340 (0.478) Number of raw reads with tag TGG: 3649690 (0.150) Number of bases in total: 2423203210 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 14955172 uniquely aligned reads, passed fragm Mappability= 61.5846% Total bases of uniquely mapped reads 1492794229 ---- 7471668 FW reads mapped to Watson strand ---- 7483504 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1492794229 ---------------------------------------------- Methylated C in mapped reads mCG 56.278% mCHG 1.779% mCHH 1.635% ---------------------------------------------- ------------------- END ---------------------- LAB_2 Number of raw reads: 32163488 Number of raw reads with CGG/TGG at 5' end: 26269305 Number of raw reads with tag CGG: 19460785 (0.605) Number of raw reads with tag TGG: 6808520 (0.212) Number of bases in total: 3209675684 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 23369525 uniquely aligned reads, passed fragm Mappability= 72.6586% Total bases of uniquely mapped reads 2332433430 ---- 11689686 FW reads mapped to Watson strand ---- 11679839 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2332433430 ---------------------------------------------- Methylated C in mapped reads mCG 60.475% mCHG 1.747% mCHH 1.725% ---------------------------------------------- ------------------- END ---------------------- LAB_3 Number of raw reads: 19694998 Number of raw reads with CGG/TGG at 5' end: 15357541 Number of raw reads with tag CGG: 11402373 (0.579) Number of raw reads with tag TGG: 3955168 (0.201) Number of bases in total: 1964659921 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 13800326 uniquely aligned reads, passed fragm Mappability= 70.0702% Total bases of uniquely mapped reads 1376894762 ---- 6908723 FW reads mapped to Watson strand ---- 6891603 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1376894762 ---------------------------------------------- Methylated C in mapped reads mCG 59.673% mCHG 1.483% mCHH 1.452% ---------------------------------------------- ------------------- END ---------------------- NGSD_1 Number of raw reads: 29644293 Number of raw reads with CGG/TGG at 5' end: 27614667 Number of raw reads with tag CGG: 20202290 (0.681) Number of raw reads with tag TGG: 7412377 (0.250) Number of bases in total: 2959513915 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 22221753 uniquely aligned reads, passed fragm Mappability= 74.9613% Total bases of uniquely mapped reads 2218221614 ---- 11154629 FW reads mapped to Watson strand ---- 11067124 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2218221614 ---------------------------------------------- Methylated C in mapped reads mCG 59.657% mCHG 5.571% mCHH 5.144% ---------------------------------------------- ------------------- END ---------------------- NGSD_2 Number of raw reads: 29013996 Number of raw reads with CGG/TGG at 5' end: 27091339 Number of raw reads with tag CGG: 19981890 (0.689) Number of raw reads with tag TGG: 7109449 (0.245) Number of bases in total: 2897327290 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 21766765 uniquely aligned reads, passed fragm Mappability= 75.0216% Total bases of uniquely mapped reads 2173473414 ---- 10919269 FW reads mapped to Watson strand ---- 10847496 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2173473414 ---------------------------------------------- Methylated C in mapped reads mCG 60.286% mCHG 5.589% mCHH 5.192% ---------------------------------------------- ------------------- END ---------------------- NGSD_3 Number of raw reads: 23882758 Number of raw reads with CGG/TGG at 5' end: 22170436 Number of raw reads with tag CGG: 15792189 (0.661) Number of raw reads with tag TGG: 6378247 (0.267) Number of bases in total: 2380881894 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 17827384 uniquely aligned reads, passed fragm Mappability= 74.6454% Total bases of uniquely mapped reads 1776849489 ---- 8947912 FW reads mapped to Watson strand ---- 8879472 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1776849489 ---------------------------------------------- Methylated C in mapped reads mCG 58.145% mCHG 5.856% mCHH 5.535% ---------------------------------------------- ------------------- END ---------------------- NGSD_4 Number of raw reads: 27250702 Number of raw reads with CGG/TGG at 5' end: 25358448 Number of raw reads with tag CGG: 18323697 (0.672) Number of raw reads with tag TGG: 7034751 (0.258) Number of bases in total: 2721146731 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 20301419 uniquely aligned reads, passed fragm Mappability= 74.4987% Total bases of uniquely mapped reads 2027107489 ---- 10178246 FW reads mapped to Watson strand ---- 10123173 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2027107489 ---------------------------------------------- Methylated C in mapped reads mCG 59.129% mCHG 5.214% mCHH 4.877% ---------------------------------------------- ------------------- END ---------------------- PEKE_1 Number of raw reads: 34393978 Number of raw reads with CGG/TGG at 5' end: 29867171 Number of raw reads with tag CGG: 20757838 (0.604) Number of raw reads with tag TGG: 9109333 (0.265) Number of bases in total: 3433419256 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 23930334 uniquely aligned reads, passed fragm Mappability= 69.5771% Total bases of uniquely mapped reads 2388506164 ---- 11977657 FW reads mapped to Watson strand ---- 11952677 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2388506164 ---------------------------------------------- Methylated C in mapped reads mCG 54.284% mCHG 0.949% mCHH 0.931% ---------------------------------------------- ------------------- END ---------------------- PEKE_2 Number of raw reads: 21538356 Number of raw reads with CGG/TGG at 5' end: 19667493 Number of raw reads with tag CGG: 14312430 (0.665) Number of raw reads with tag TGG: 5355063 (0.249) Number of bases in total: 2150191073 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 16341501 uniquely aligned reads, passed fragm Mappability= 75.8716% Total bases of uniquely mapped reads 1631470701 ---- 8182197 FW reads mapped to Watson strand ---- 8159304 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1631470701 ---------------------------------------------- Methylated C in mapped reads mCG 59.950% mCHG 1.108% mCHH 1.118% ---------------------------------------------- ------------------- END ---------------------- PEKE_3 Number of raw reads: 33247796 Number of raw reads with CGG/TGG at 5' end: 29637966 Number of raw reads with tag CGG: 21665062 (0.652) Number of raw reads with tag TGG: 7972904 (0.240) Number of bases in total: 3313769859 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 25116454 uniquely aligned reads, passed fragm Mappability= 75.5432% Total bases of uniquely mapped reads 2503470511 ---- 12578462 FW reads mapped to Watson strand ---- 12537992 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2503470511 ---------------------------------------------- Methylated C in mapped reads mCG 60.165% mCHG 0.777% mCHH 0.772% ---------------------------------------------- ------------------- END ---------------------- PEKE_4 Number of raw reads: 29237477 Number of raw reads with CGG/TGG at 5' end: 27461117 Number of raw reads with tag CGG: 20579793 (0.704) Number of raw reads with tag TGG: 6881324 (0.235) Number of bases in total: 2918293737 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 21965719 uniquely aligned reads, passed fragm Mappability= 75.1286% Total bases of uniquely mapped reads 2192060927 ---- 11007022 FW reads mapped to Watson strand ---- 10958697 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2192060927 ---------------------------------------------- Methylated C in mapped reads mCG 63.292% mCHG 16.259% mCHH 15.823% ---------------------------------------------- ------------------- END ---------------------- POM_1 Number of raw reads: 22913882 Number of raw reads with CGG/TGG at 5' end: 14506996 Number of raw reads with tag CGG: 11003838 (0.480) Number of raw reads with tag TGG: 3503158 (0.153) Number of bases in total: 2283863212 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 15065700 uniquely aligned reads, passed fragm Mappability= 65.7492% Total bases of uniquely mapped reads 1501927605 ---- 7540362 FW reads mapped to Watson strand ---- 7525338 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1501927605 ---------------------------------------------- Methylated C in mapped reads mCG 59.167% mCHG 2.631% mCHH 2.530% ---------------------------------------------- ------------------- END ---------------------- PQU_1 Number of raw reads: 37725000 Number of raw reads with CGG/TGG at 5' end: 35398930 Number of raw reads with tag CGG: 26913507 (0.713) Number of raw reads with tag TGG: 8485423 (0.225) Number of bases in total: 3725327769 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 29830786 uniquely aligned reads, passed fragm Mappability= 79.0743% Total bases of uniquely mapped reads 2942877827 ---- 14980235 FW reads mapped to Watson strand ---- 14850551 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2942877827 ---------------------------------------------- Methylated C in mapped reads mCG 64.470% mCHG 23.026% mCHH 22.452% ---------------------------------------------- ------------------- END ---------------------- PTWD_1 Number of raw reads: 28841184 Number of raw reads with CGG/TGG at 5' end: 24918154 Number of raw reads with tag CGG: 18271041 (0.634) Number of raw reads with tag TGG: 6647113 (0.230) Number of bases in total: 2877991512 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 21437623 uniquely aligned reads, passed fragm Mappability= 74.3299% Total bases of uniquely mapped reads 2139453540 ---- 10716614 FW reads mapped to Watson strand ---- 10721009 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2139453540 ---------------------------------------------- Methylated C in mapped reads mCG 61.092% mCHG 1.284% mCHH 1.246% ---------------------------------------------- ------------------- END ---------------------- PTWD_2 Number of raw reads: 31263399 Number of raw reads with CGG/TGG at 5' end: 24687932 Number of raw reads with tag CGG: 17738831 (0.567) Number of raw reads with tag TGG: 6949101 (0.222) Number of bases in total: 3120231996 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 20843616 uniquely aligned reads, passed fragm Mappability= 66.6710% Total bases of uniquely mapped reads 2080324242 ---- 10416922 FW reads mapped to Watson strand ---- 10426694 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2080324242 ---------------------------------------------- Methylated C in mapped reads mCG 55.428% mCHG 1.178% mCHH 1.133% ---------------------------------------------- ------------------- END ---------------------- PUG_1 Number of raw reads: 27712825 Number of raw reads with CGG/TGG at 5' end: 25168741 Number of raw reads with tag CGG: 17819390 (0.643) Number of raw reads with tag TGG: 7349351 (0.265) Number of bases in total: 2767329332 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 20585176 uniquely aligned reads, passed fragm Mappability= 74.2803% Total bases of uniquely mapped reads 2055515122 ---- 10296258 FW reads mapped to Watson strand ---- 10288918 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2055515122 ---------------------------------------------- Methylated C in mapped reads mCG 57.963% mCHG 0.740% mCHH 0.747% ---------------------------------------------- ------------------- END ---------------------- PUG_2 Number of raw reads: 24354791 Number of raw reads with CGG/TGG at 5' end: 13515122 Number of raw reads with tag CGG: 10158503 (0.417) Number of raw reads with tag TGG: 3356619 (0.138) Number of bases in total: 2425889185 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 14614535 uniquely aligned reads, passed fragm Mappability= 60.0068% Total bases of uniquely mapped reads 1456152974 ---- 7309278 FW reads mapped to Watson strand ---- 7305257 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1456152974 ---------------------------------------------- Methylated C in mapped reads mCG 53.532% mCHG 1.819% mCHH 1.627% ---------------------------------------------- ------------------- END ---------------------- PUG_3 Number of raw reads: 22903666 Number of raw reads with CGG/TGG at 5' end: 21887043 Number of raw reads with tag CGG: 12695357 (0.554) Number of raw reads with tag TGG: 9191686 (0.401) Number of bases in total: 2288688629 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 14508751 uniquely aligned reads, passed fragm Mappability= 63.3469% Total bases of uniquely mapped reads 1449725982 ---- 7259174 FW reads mapped to Watson strand ---- 7249577 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1449725982 ---------------------------------------------- Methylated C in mapped reads mCG 58.479% mCHG 0.925% mCHH 0.754% ---------------------------------------------- ------------------- END ---------------------- PUG_4 Number of raw reads: 35579910 Number of raw reads with CGG/TGG at 5' end: 33008741 Number of raw reads with tag CGG: 23070402 (0.648) Number of raw reads with tag TGG: 9938339 (0.279) Number of bases in total: 3551010292 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 26852413 uniquely aligned reads, passed fragm Mappability= 75.4707% Total bases of uniquely mapped reads 2679345881 ---- 13454026 FW reads mapped to Watson strand ---- 13398387 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2679345881 ---------------------------------------------- Methylated C in mapped reads mCG 56.814% mCHG 0.644% mCHH 0.656% ---------------------------------------------- ------------------- END ---------------------- SAMO_1 Number of raw reads: 32025441 Number of raw reads with CGG/TGG at 5' end: 28033773 Number of raw reads with tag CGG: 20451690 (0.639) Number of raw reads with tag TGG: 7582083 (0.237) Number of bases in total: 3191768556 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 23748790 uniquely aligned reads, passed fragm Mappability= 74.1560% Total bases of uniquely mapped reads 2366919413 ---- 11882259 FW reads mapped to Watson strand ---- 11866531 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2366919413 ---------------------------------------------- Methylated C in mapped reads mCG 59.614% mCHG 5.048% mCHH 4.913% ---------------------------------------------- ------------------- END ---------------------- SAMO_2 Number of raw reads: 26811776 Number of raw reads with CGG/TGG at 5' end: 25530450 Number of raw reads with tag CGG: 18597599 (0.694) Number of raw reads with tag TGG: 6932851 (0.259) Number of bases in total: 2676456426 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 21120732 uniquely aligned reads, passed fragm Mappability= 78.7741% Total bases of uniquely mapped reads 2108146694 ---- 10579399 FW reads mapped to Watson strand ---- 10541333 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2108146694 ---------------------------------------------- Methylated C in mapped reads mCG 60.577% mCHG 2.788% mCHH 2.757% ---------------------------------------------- ------------------- END ---------------------- SAMO_3 Number of raw reads: 26109570 Number of raw reads with CGG/TGG at 5' end: 22938505 Number of raw reads with tag CGG: 16834635 (0.645) Number of raw reads with tag TGG: 6103870 (0.234) Number of bases in total: 2606401272 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 17876464 uniquely aligned reads, passed fragm Mappability= 68.4671% Total bases of uniquely mapped reads 1784571022 ---- 8935878 FW reads mapped to Watson strand ---- 8940586 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1784571022 ---------------------------------------------- Methylated C in mapped reads mCG 59.156% mCHG 1.012% mCHH 0.990% ---------------------------------------------- ------------------- END ---------------------- SCOT_1 Number of raw reads: 26617502 Number of raw reads with CGG/TGG at 5' end: 24283421 Number of raw reads with tag CGG: 17976281 (0.675) Number of raw reads with tag TGG: 6307140 (0.237) Number of bases in total: 2658435042 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 18996029 uniquely aligned reads, passed fragm Mappability= 71.3667% Total bases of uniquely mapped reads 1897114307 ---- 9506115 FW reads mapped to Watson strand ---- 9489914 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1897114307 ---------------------------------------------- Methylated C in mapped reads mCG 59.994% mCHG 0.836% mCHH 0.815% ---------------------------------------------- ------------------- END ---------------------- SHAR_1 Number of raw reads: 33003084 Number of raw reads with CGG/TGG at 5' end: 31601800 Number of raw reads with tag CGG: 22456184 (0.680) Number of raw reads with tag TGG: 9145616 (0.277) Number of bases in total: 3297727834 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 24585873 uniquely aligned reads, passed fragm Mappability= 74.4957% Total bases of uniquely mapped reads 2456074075 ---- 12325800 FW reads mapped to Watson strand ---- 12260073 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2456074075 ---------------------------------------------- Methylated C in mapped reads mCG 56.491% mCHG 1.867% mCHH 1.822% ---------------------------------------------- ------------------- END ---------------------- SHAR_2 Number of raw reads: 21901034 Number of raw reads with CGG/TGG at 5' end: 21026095 Number of raw reads with tag CGG: 14983653 (0.684) Number of raw reads with tag TGG: 6042442 (0.276) Number of bases in total: 2187077362 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 16209380 uniquely aligned reads, passed fragm Mappability= 74.0119% Total bases of uniquely mapped reads 1618195204 ---- 8122845 FW reads mapped to Watson strand ---- 8086535 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1618195204 ---------------------------------------------- Methylated C in mapped reads mCG 56.570% mCHG 1.927% mCHH 1.850% ---------------------------------------------- ------------------- END ---------------------- SHAR_3 Number of raw reads: 29823139 Number of raw reads with CGG/TGG at 5' end: 28211376 Number of raw reads with tag CGG: 20845066 (0.699) Number of raw reads with tag TGG: 7366310 (0.247) Number of bases in total: 2979318960 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 23241191 uniquely aligned reads, passed fragm Mappability= 77.9301% Total bases of uniquely mapped reads 2321687732 ---- 11622189 FW reads mapped to Watson strand ---- 11619002 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2321687732 ---------------------------------------------- Methylated C in mapped reads mCG 61.597% mCHG 0.849% mCHH 0.851% ---------------------------------------------- ------------------- END ---------------------- SHAR_4 Number of raw reads: 30965439 Number of raw reads with CGG/TGG at 5' end: 29380451 Number of raw reads with tag CGG: 20952023 (0.677) Number of raw reads with tag TGG: 8428428 (0.272) Number of bases in total: 3093074153 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 24614166 uniquely aligned reads, passed fragm Mappability= 79.4892% Total bases of uniquely mapped reads 2458411426 ---- 12331391 FW reads mapped to Watson strand ---- 12282775 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2458411426 ---------------------------------------------- Methylated C in mapped reads mCG 59.186% mCHG 1.306% mCHH 1.292% ---------------------------------------------- ------------------- END ---------------------- SPOO_1 Number of raw reads: 24459585 Number of raw reads with CGG/TGG at 5' end: 20789229 Number of raw reads with tag CGG: 15119534 (0.618) Number of raw reads with tag TGG: 5669695 (0.232) Number of bases in total: 2441083644 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 16923276 uniquely aligned reads, passed fragm Mappability= 69.1887% Total bases of uniquely mapped reads 1688820710 ---- 8472390 FW reads mapped to Watson strand ---- 8450886 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1688820710 ---------------------------------------------- Methylated C in mapped reads mCG 57.078% mCHG 2.098% mCHH 2.019% ---------------------------------------------- ------------------- END ---------------------- SPOO_2 Number of raw reads: 33698464 Number of raw reads with CGG/TGG at 5' end: 29601352 Number of raw reads with tag CGG: 20275431 (0.602) Number of raw reads with tag TGG: 9325921 (0.277) Number of bases in total: 3344443895 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 23900018 uniquely aligned reads, passed fragm Mappability= 70.9232% Total bases of uniquely mapped reads 2369285774 ---- 11994922 FW reads mapped to Watson strand ---- 11905096 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2369285774 ---------------------------------------------- Methylated C in mapped reads mCG 52.969% mCHG 0.881% mCHH 0.875% ---------------------------------------------- ------------------- END ---------------------- SSHP_1 Number of raw reads: 19489165 Number of raw reads with CGG/TGG at 5' end: 15573520 Number of raw reads with tag CGG: 11605265 (0.595) Number of raw reads with tag TGG: 3968255 (0.204) Number of bases in total: 1941376869 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 13992873 uniquely aligned reads, passed fragm Mappability= 71.7982% Total bases of uniquely mapped reads 1394393885 ---- 6996806 FW reads mapped to Watson strand ---- 6996067 FW reads mapped to Crick strand Total bases of uniquely mapped reads 1394393885 ---------------------------------------------- Methylated C in mapped reads mCG 61.007% mCHG 1.100% mCHH 1.105% ---------------------------------------------- ------------------- END ---------------------- THAI_1 Number of raw reads: 28478196 Number of raw reads with CGG/TGG at 5' end: 27012959 Number of raw reads with tag CGG: 19362646 (0.680) Number of raw reads with tag TGG: 7650313 (0.269) Number of bases in total: 2843315020 Number of reads are rejected because of multiple hit Number of unique-hits reads (before post-filtering): ------ 20974759 uniquely aligned reads, passed fragm Mappability= 73.6520% Total bases of uniquely mapped reads 2093478781 ---- 10529404 FW reads mapped to Watson strand ---- 10445355 FW reads mapped to Crick strand Total bases of uniquely mapped reads 2093478781 ---------------------------------------------- Methylated C in mapped reads mCG 57.173% mCHG 7.232% mCHH 6.628% ---------------------------------------------- ------------------- END ----------------------