{ "access": { "embargo": { "active": false, "reason": null }, "files": "public", "record": "public", "status": "open" }, "created": "2021-06-12T20:47:55.288051+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "files": { "count": 6, "enabled": true, "entries": { "Fig. S1.pdf": { "access": { "hidden": false }, "checksum": "md5:e5d6adf8adb10cf7b08795acc018b957", "ext": "pdf", "id": "66748456-dc57-4fe9-b97a-9028bb7802c9", "key": "Fig. S1.pdf", "links": { "content": "https://zenodo.org/api/records/4939340/files/Fig.%20S1.pdf/content", "iiif_api": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S1.pdf/full/full/0/default.png", "iiif_base": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S1.pdf", "iiif_canvas": "https://zenodo.org/api/iiif/record:4939340/canvas/Fig.%20S1.pdf", "iiif_info": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S1.pdf/info.json", "self": "https://zenodo.org/api/records/4939340/files/Fig.%20S1.pdf" }, "metadata": null, "mimetype": "application/pdf", "size": 35914, "storage_class": "L" }, "Fig. S2.pdf": { "access": { "hidden": false }, "checksum": "md5:2f42e0ff49f05b4bc82c4171452a2c9b", "ext": "pdf", "id": "93434c8d-47b3-4779-ae7c-d518fa2102cd", "key": "Fig. S2.pdf", "links": { "content": "https://zenodo.org/api/records/4939340/files/Fig.%20S2.pdf/content", "iiif_api": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S2.pdf/full/full/0/default.png", "iiif_base": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S2.pdf", "iiif_canvas": "https://zenodo.org/api/iiif/record:4939340/canvas/Fig.%20S2.pdf", "iiif_info": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S2.pdf/info.json", "self": "https://zenodo.org/api/records/4939340/files/Fig.%20S2.pdf" }, "metadata": null, "mimetype": "application/pdf", "size": 2276568, "storage_class": "L" }, "Fig. S3.pdf": { "access": { "hidden": false }, "checksum": "md5:b7a5d5d59fb40ac790791f37414f8bf7", "ext": "pdf", "id": "f8dbcf85-3614-4f32-a6d1-70355361ac06", "key": "Fig. S3.pdf", "links": { "content": "https://zenodo.org/api/records/4939340/files/Fig.%20S3.pdf/content", "iiif_api": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S3.pdf/full/full/0/default.png", "iiif_base": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S3.pdf", "iiif_canvas": "https://zenodo.org/api/iiif/record:4939340/canvas/Fig.%20S3.pdf", "iiif_info": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S3.pdf/info.json", "self": "https://zenodo.org/api/records/4939340/files/Fig.%20S3.pdf" }, "metadata": null, "mimetype": "application/pdf", "size": 21911, "storage_class": "L" }, "Fig. S4.jpg": { "access": { "hidden": false }, "checksum": "md5:a2d5927b9b20d4f9648c71605a07f5d8", "ext": "jpg", "id": "14dd3ff6-9b38-4c00-bf27-57ed6567247c", "key": "Fig. S4.jpg", "links": { "content": "https://zenodo.org/api/records/4939340/files/Fig.%20S4.jpg/content", "iiif_api": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S4.jpg/full/full/0/default.png", "iiif_base": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S4.jpg", "iiif_canvas": "https://zenodo.org/api/iiif/record:4939340/canvas/Fig.%20S4.jpg", "iiif_info": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S4.jpg/info.json", "self": "https://zenodo.org/api/records/4939340/files/Fig.%20S4.jpg" }, "metadata": { "height": 2758, "width": 2529 }, "mimetype": "image/jpeg", "size": 973616, "storage_class": "L" }, "Table S1.xlsx": { "access": { "hidden": false }, "checksum": "md5:7904540ee70289a0aa86244443d9048e", "ext": "xlsx", "id": "03fb7b0b-c579-40b0-b9f6-8b6c2807160b", "key": "Table S1.xlsx", "links": { "content": "https://zenodo.org/api/records/4939340/files/Table%20S1.xlsx/content", "self": "https://zenodo.org/api/records/4939340/files/Table%20S1.xlsx" }, "metadata": null, "mimetype": "application/octet-stream", "size": 64779, "storage_class": "L" }, "Table S2.xlsx": { "access": { "hidden": false }, "checksum": "md5:6a12f2b1823d05459c47919943d8b074", "ext": "xlsx", "id": "a6c2a4ee-5a92-4fb2-982b-c0d78387ba92", "key": "Table S2.xlsx", "links": { "content": "https://zenodo.org/api/records/4939340/files/Table%20S2.xlsx/content", "self": "https://zenodo.org/api/records/4939340/files/Table%20S2.xlsx" }, "metadata": null, "mimetype": "application/octet-stream", "size": 5428, "storage_class": "L" } }, "order": [], "total_bytes": 3378216 }, "id": "4939340", "is_draft": false, "is_published": true, "links": { "access": "https://zenodo.org/api/records/4939340/access", "access_grants": "https://zenodo.org/api/records/4939340/access/grants", "access_links": "https://zenodo.org/api/records/4939340/access/links", "access_request": "https://zenodo.org/api/records/4939340/access/request", "access_users": "https://zenodo.org/api/records/4939340/access/users", "archive": "https://zenodo.org/api/records/4939340/files-archive", "archive_media": "https://zenodo.org/api/records/4939340/media-files-archive", "communities": "https://zenodo.org/api/records/4939340/communities", "communities-suggestions": "https://zenodo.org/api/records/4939340/communities-suggestions", "doi": "https://doi.org/10.5061/dryad.6d5m2", "draft": "https://zenodo.org/api/records/4939340/draft", "file_modification": "https://zenodo.org/api/records/4939340/file-modification", "files": "https://zenodo.org/api/records/4939340/files", "latest": "https://zenodo.org/api/records/4939340/versions/latest", "latest_html": "https://zenodo.org/records/4939340/latest", "media_files": "https://zenodo.org/api/records/4939340/media-files", "parent": "https://zenodo.org/api/records/4939339", "parent_html": "https://zenodo.org/records/4939339", "preview_html": "https://zenodo.org/records/4939340?preview=1", "quota_increase": "https://zenodo.org/api/records/4939340/quota-increase", "request_deletion": "https://zenodo.org/api/records/4939340/request-deletion", "requests": "https://zenodo.org/api/records/4939340/requests", "reserve_doi": "https://zenodo.org/api/records/4939340/draft/pids/doi", "self": "https://zenodo.org/api/records/4939340", "self_doi": "https://doi.org/10.5061/dryad.6d5m2", "self_doi_html": "https://zenodo.org/doi/10.5061/dryad.6d5m2", "self_html": "https://zenodo.org/records/4939340", "self_iiif_manifest": "https://zenodo.org/api/iiif/record:4939340/manifest", "self_iiif_sequence": "https://zenodo.org/api/iiif/record:4939340/sequence/default", "thumbnails": { "10": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S2.pdf/full/%5E10,/0/default.jpg", "100": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S2.pdf/full/%5E100,/0/default.jpg", "1200": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S2.pdf/full/%5E1200,/0/default.jpg", "250": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S2.pdf/full/%5E250,/0/default.jpg", "50": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S2.pdf/full/%5E50,/0/default.jpg", "750": "https://zenodo.org/api/iiif/record:4939340:Fig.%20S2.pdf/full/%5E750,/0/default.jpg" }, "versions": "https://zenodo.org/api/records/4939340/versions" }, "media_files": { "count": 4, "enabled": true, "entries": { "Fig. S1.pdf.ptif": { "access": { "hidden": true }, "ext": "ptif", "id": "3b018f03-cc7d-4114-b9a2-2e6911763391", "key": "Fig. S1.pdf.ptif", "links": { "content": "https://zenodo.org/api/records/4939340/files/Fig.%20S1.pdf.ptif/content", "self": "https://zenodo.org/api/records/4939340/files/Fig.%20S1.pdf.ptif" }, "metadata": null, "mimetype": "application/octet-stream", "processor": { "source_file_id": "66748456-dc57-4fe9-b97a-9028bb7802c9", "status": "finished", "type": "image-tiles" }, "size": 0, "storage_class": "L" }, "Fig. S2.pdf.ptif": { "access": { "hidden": true }, "ext": "ptif", "id": "a535a72f-8b63-4e77-98c3-32f4f4eb7b29", "key": "Fig. S2.pdf.ptif", "links": { "content": "https://zenodo.org/api/records/4939340/files/Fig.%20S2.pdf.ptif/content", "self": "https://zenodo.org/api/records/4939340/files/Fig.%20S2.pdf.ptif" }, "metadata": null, "mimetype": "application/octet-stream", "processor": { "source_file_id": "93434c8d-47b3-4779-ae7c-d518fa2102cd", "status": "finished", "type": "image-tiles" }, "size": 0, "storage_class": "L" }, "Fig. S3.pdf.ptif": { "access": { "hidden": true }, "ext": "ptif", "id": "24163166-eaf4-45d6-a288-3a0325ddd30b", "key": "Fig. S3.pdf.ptif", "links": { "content": "https://zenodo.org/api/records/4939340/files/Fig.%20S3.pdf.ptif/content", "self": "https://zenodo.org/api/records/4939340/files/Fig.%20S3.pdf.ptif" }, "metadata": null, "mimetype": "application/octet-stream", "processor": { "source_file_id": "f8dbcf85-3614-4f32-a6d1-70355361ac06", "status": "finished", "type": "image-tiles" }, "size": 0, "storage_class": "L" }, "Fig. S4.jpg.ptif": { "access": { "hidden": true }, "ext": "ptif", "id": "09fec830-f9f2-47b9-b6f9-748f393e2564", "key": "Fig. S4.jpg.ptif", "links": { "content": "https://zenodo.org/api/records/4939340/files/Fig.%20S4.jpg.ptif/content", "self": "https://zenodo.org/api/records/4939340/files/Fig.%20S4.jpg.ptif" }, "metadata": null, "mimetype": "application/octet-stream", "processor": { "source_file_id": "14dd3ff6-9b38-4c00-bf27-57ed6567247c", "status": "finished", "type": "image-tiles" }, "size": 0, "storage_class": "L" } }, "order": [], "total_bytes": 0 }, "metadata": { "additional_descriptions": [ { "description": "
Fig. S1. Time-calibrated Bayesian phylogeny of Ranidae with corresponding posterior probabilities and 95% HPD age intervals.
Fig. S1.pdf
Fig. S2. Ancestral range reconstruction under the best-fit, BAYAREALIKE+J model.
Fig. S2.pdf
Fig. S3. Results of the TESS analysis performed on the entire phylogeny.
Fig. S3.pdf
Fig. S4. Speciation rates through time for subclades that dispersed to a new geographic region.
Fig. S4.jpg
Table S1. Genbank accession numbers for samples used in this study.
Table S1.xlsx
Table S2. Model comparison results from the BioGeoBEARS analysis.
Table S2.xlsx
", "type": { "id": "notes", "title": { "de": "Anmerkungen", "en": "Notes" } } } ], "creators": [ { "person_or_org": { "family_name": "Chan", "given_name": "Kin Onn", "name": "Chan, Kin Onn", "type": "personal" } }, { "affiliations": [ { "name": "University of Kansas" } ], "person_or_org": { "family_name": "Brown", "given_name": "Rafe M.", "name": "Brown, Rafe M.", "type": "personal" } } ], "description": "The interplay between range expansion and concomitant diversification is of fundamental interest to evolutionary biologists, particularly when linked to intercontinental dispersal and/or large scale extinctions. The evolutionary history of true frogs has been characterized by circumglobal range expansion. As a lineage that survived the Eocene\u2013Oligocene extinction event (EOEE), the group provides an ideal system to test the prediction that range expansion triggers increased net diversification. We constructed the most densely sampled, time-calibrated phylogeny to date in order to: (i) characterize tempo and patterns of diversification; (ii) assess the impact of the EOEE; and (iii) test the hypothesis that range expansion was followed by increased net diversification. We show that late Eocene colonization of novel biogeographic regions was not affected by the EOEE and surprisingly, global expansion was not followed by increased net diversification. On the contrary, the diversification rate declined or did not shift following geographical expansion. Thus, the diversification history of true frogs contradicts the prevailing expectation that amphibian net diversification accelerated towards the present or increased following range expansion. Rather, our results demonstrate that despite their dynamic biogeographic history, true frogs diversified at a relatively constantly rate, even as they colonized the major land masses of Earth.", "publication_date": "2017-07-19", "publisher": "Zenodo", "related_identifiers": [ { "identifier": "10.1098/rsbl.2017.0299", "relation_type": { "id": "iscitedby", "title": { "de": "Wird zitiert von", "en": "Is cited by" } }, "scheme": "doi" } ], "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "CC0 waives copyright interest in a work you've created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach." }, "icon": "cc-cc0-icon", "id": "cc0-1.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/publicdomain/zero/1.0/legalcode" }, "title": { "en": "Creative Commons Zero v1.0 Universal" } } ], "subjects": [ { "subject": "Ranidae phylogeny" }, { "subject": "Diversification shift" } ], "title": "Data from: Did true frogs 'dispersify'?" }, "parent": { "access": { "owned_by": { "user": "90070" } }, "communities": { "default": "734b6452-1f40-4db0-b218-08ab1d568b7f", "entries": [ { "access": { "member_policy": "open", "members_visibility": "public", "record_submission_policy": "open", "review_policy": "open", "visibility": "public" }, "children": { "allow": false }, "created": "2020-02-04T14:03:17.992421+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "id": "734b6452-1f40-4db0-b218-08ab1d568b7f", "links": {}, "metadata": { "curation_policy": "

The Dryad collection in Zenodo contains datasets mirrored from the Dryad Digital Repository. If you want your dataset to appear here, submit it through https://datadryad.org. No other datasets will be accepted.

", "description": "Dryad is an international open-access repository of research data, especially data underlying scientific and medical publications. Dryad is a curated general-purpose repository that makes data discoverable, freely reusable, and citable.", "organizations": [ { "id": "00x6h5n95" } ], "page": "

Dryad is a community-governed open data publishing and curation repository. Through Dryad and Zenodo's partnership, Zenodo hosts a preservation copy of Dryad datasets, available through this Zenodo Community. For more information or to access the original published datasets, visit https://datadryad.org.

", "title": "Dryad", "type": { "id": "organization" }, "website": "https://datadryad.org" }, "revision_id": 3, "slug": "dryad", "updated": "2024-02-01T21:26:57.292847+00:00" } ], "ids": [ "734b6452-1f40-4db0-b218-08ab1d568b7f" ] }, "id": "4939339", "pids": {} }, "pids": { "doi": { "identifier": "10.5061/dryad.6d5m2", "provider": "external" }, "oai": { "identifier": "oai:zenodo.org:4939340", "provider": "oai" } }, "revision_id": 6, "stats": { "all_versions": { "data_volume": 40445698.0, "downloads": 84, "unique_downloads": 84, "unique_views": 95, "views": 97 }, "this_version": { "data_volume": 40445698.0, "downloads": 84, "unique_downloads": 84, "unique_views": 95, "views": 97 } }, "status": "published", "swh": {}, "updated": "2024-07-19T01:31:47.396734+00:00", "versions": { "index": 1, "is_latest": true } }