Published January 28, 2017 | Version v1
Dataset Open

Data from: Progression of neuronal damage in an in vitro model of the ischemic penumbra

Description

Improvement of neuronal recovery in the ischemic penumbra around a brain infarct has a large potential to advance clinical recovery of patients with acute ischemic stroke. However, pathophysiological mechanisms leading to either recovery or secondary damage in the penumbra are not completely understood. We studied neuronal dynamics in a model system of the penumbra consisting of networks of cultured cortical neurons exposed to controlled levels and durations of hypoxia. Short periods of hypoxia (pO2≈20mmHg) reduced spontaneous activity, due to impeded synaptic function. After ≈6 hours, activity and connectivity partially recovered, even during continuing hypoxia. If the oxygen supply was restored within 12 hours, changes in network connectivity were completely reversible. For longer periods of hypoxia (12–30 h), activity levels initially increased, but eventually decreased and connectivity changes became partially irreversible. After ≈30 hours, all functional connections disappeared and no activity remained. Since this complete silence seemed unrelated to hypoxic depths, but always followed an extended period of low activity, we speculate that irreversible damage (at least partly) results from insufficient neuronal activation. This opens avenues for therapies to improve recovery by neuronal activation.

Notes

Overview experiments

List of experiments that were used per analysis

ReadXDat

Script to read .xdat files in MATLAB

CTRL experiments (1)

Neural activity recordings during normoxia.
CTRL(1).zip

CTRL (2)

control recordings during normoxia.
CTRL(2).zip

6 hours hypoxia

Neural activity before, during, and after 6 hours of hypoxia at pO2=20mmHg.
6hours.zip

12 hours hypoxia

Raw datafiles of 12 hours hypoxia at 10% of normoxia
12hours.zip

24 hours hypoxia (1)

Neural activity recorded before, during and after 24 hours of hypoxia at pO2=20mmHg.
24hours(1).zip

24 hours hypoxia(2)

Activity recording before, during and after 24 hours of hypoxia at pO2=20mmHg.
24hours(2).zip

48 hours hypoxia pO2=20mmHg

Activity recording before, during and after 48 hours of hypoxia at pO2=20mmHg
48hours-10%O2.zip

48 hours hypoxia at pO2=80mmHg(1)

Activity recording before, during and after 24 hours of hypoxia at pO2=80mmHg.
48hours-50%O2(1).zip

48 hours hypoxia at pO2=80mmHg(2)

Activity recording before, during and after 24 hours of hypoxia at pO2=80mmHg.
48hours-50%O2(2).zip

LifeDeath Staining

fluorescent images of combined PI (red) and DAPI (blue)staining

Files

12hours.zip

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Additional details

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