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Unwarp (automatic)

Description

Apply slice-by-slice (2D) B-spline unwarping-based image registration to a multi-dimensional stack. Images can be aligned relative to the first frame in the stack, the previous frame or a separate image in the workspace. The registration transform can also be calculated from a separate stack to the one that it will be applied to. Registration can be performed along either the time or Z axes. The non-registered axis (e.g. time axis when registering in Z) can be "linked" (all frames given the same registration) or "independent" (each stack registered separately).

This module uses the BUnwarpJ plugin to calculate and apply the necessary 2D transforms. Detailed information about how the BUnwarpJ process works can be found at https://imagej.net/BUnwarpJ.

Parameters