Binary operations 2D

Applies stock ImageJ binary operations to an image in the workspace.

Calculate distance map

Creates a 32-bit greyscale image from an input binary image, where the value of each foreground pixel in the input image is equal to its Euclidean distance to the nearest background pixel.

Dilate and erode

Applies binary dilate or erode operations to an image in the workspace.

Extended minima

Applies a 3D (or 2D for single slice images) binary skeletonisation operation to an image in the workspace.

Fill holes

Performs a 3D fill holes operation on an input binary image.

Fill holes by volume

Fix skeleton breaks

Skeletonise

Creates an skeletonised representation of a specific binary image in the workspace.

Watershed transform

Peforms a watershed transform on a specified input image.