Active contour-based detection

Convex hull 2D

Fit 2D convex hull to a 2D object.

Extract object edges

Get local object region

Creates a local object region (sphere centred on the centroid of the input object) for each object in a specified object collection.

Get object surface

Create surface objects for each input object.

Hough-based detection

Identify objects

Creates objects from an input binary image.

Manually identify objects

Manually create objects using the ImageJ selection tools.

Project objects

Create projections of objects along the z-axis into an xy-plane representation.

Ridge detection

Detects ridge objects in an image from the workspace.

Run TrackMate

Uses the View