Modules ➤ Image processing ➤ Stack
Image processing operations leading to changes in the whole stack layout. For example, substack extraction, cropping or drift correction
Modules performing alignment of images within a stack to account for sample drift or other motion.
Extract a Z-substack from an input stack based on either manually-selected slices, or an automatically-calculated best-focus slice.
Combine two or more image stacks into a single stack.
Emsures 3D stacks (or 4D with multiple channels) are of the expected type (timeseries or Z-stack).
Crop an input image in X and Y using pre-defined limits.
Extract a substack from the specified input image in terms of channels, slices and frames.
Flips the order of slices in stack.
Channels will be focused individually.
Change the bit-depth of an image stack.
Interpolates Z-axis of image to match XY spatial calibration
Removes the specified image(s) from the workspace.
This module duplicates an image into another, existing, image.
Uses the bUnwarpJ_ plugin by Ignacio Arganda-Carreras.