{ "n_nodes" : 2048, "n_layers" : 2, "batch_size" : 40000, "celltypes" : [ "J000", "J002", "J004", "J006", "J007", "J008", "J010", "J011", "J012", "J013", "J014", "J015", "J019", "J020", "J021", "J023", "J024", "J025", "J026", "J027", "J028", "J029", "J033", "J035", "J036", "J038", "J040", "J041", "J042", "J043", "J044", "J045", "J046", "J047", "J048", "J049", "J050", "J051", "J053", "J055", "J056", "J057", "J059", "J060", "J061", "J062", "J063", "J066", "J067", "J068", "J069", "J071", "J072", "J073", "J074", "J076", "J077", "J078", "J082", "J083", "J084", "J085", "J086", "J090", "J091", "J092", "J095", "J096", "J097", "J098", "J099", "J101", "J102", "J104", "J105", "J107", "J108", "J109", "J111", "J112", "J113", "J115", "J116", "J118", "J120", "J122", "J123", "J124", "J125", "J128", "J129", "J130", "J131", "J132", "J135", "J137", "J138", "J139", "J140", "J143", "J144", "J146", "J147", "J148", "J149", "J153", "J156", "J158", "J159", "J160", "J161", "J162", "J163", "J164", "J168", 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"J352", "J355", "J356", "J358", "J359", "J364", "J365", "J366", "J367", "J368", "J369", "J370", "J371", "J372", "J374", "J378", "J379", "J381", "J382", "J385", "J387", "J389", "J390", "J391", "J392", "J394", "J395", "J396", "J400", "J401", "J402", "J403", "J404", "J406", "J411", "J413", "J415", "J418", "J419", "J421", "J424", "J428", "J430", "J432", "J434", "J435", "J439", "J440", "J442", "J445", "J446", "J447", "J448", "J449", "J450", "J452", "J453", "J457", "J463", "J465", "J466", "J467", "J468", "J469", "J477", "J478", "J480", "J481", "J482", "J485", "J486", "J489", "J491", "J492", "J493", "J495", "J496", "J499", "J502", "J504", "J506", "J508", "J510", "J511", "J514", "J518", "J521", "J530", "J531", "J532", "J533", "J534", "J537", "J539", "J541", "J546", "J547", "J548", "J549", "J553", "J555", "J558", "J561", "J564", "J567", "J569", "J570", "J571", "J573", "J578", "J579", "J582", "J586", "J588", "J591", "J595", "J599", "J600", "J602", "J603", "J604", "J605", "J606", "J607", "J608", "J609", "J617", "J620", "J624", "J633", "J635", "J639", "J642", "J643", "J644", "J667", "J675", "J676", "J678", "J689", "J697", "J699", "J707", "J708", "J710", "J717", "J721", "J724", "J737", "J744", "J774", "J775", "J781", "J797", "J816", "J833", "J865", "J896", "J905", "J911" ], "n_250bp_factors" : 40, "n_celltype_factors" : 32, "n_25bp_factors" : 25, "n_genomic_positions" : 1199362, "n_5kbp_factors" : 45, "assays" : [ "ATAC-seq_signal_p-value", "CAGE_minus_strand_signal_of_all_reads", "CAGE_plus_strand_signal_of_all_reads", "ChIP-seq_ATF3_signal_p-value", "ChIP-seq_BHLHE40_signal_p-value", "ChIP-seq_CEBPB_signal_p-value", "ChIP-seq_CHD2_signal_p-value", "ChIP-seq_CTCF_signal_p-value", "ChIP-seq_EGR1_signal_p-value", "ChIP-seq_ELF1_signal_p-value", "ChIP-seq_ELK1_signal_p-value", "ChIP-seq_EP300_signal_p-value", "ChIP-seq_ETS1_signal_p-value", "ChIP-seq_EZH2_signal_p-value", "ChIP-seq_EZH2phosphoT487_signal_p-value", "ChIP-seq_FOXA1_signal_p-value", "ChIP-seq_FOXK2_signal_p-value", "ChIP-seq_GABPA_signal_p-value", "ChIP-seq_GTF2F1_signal_p-value", "ChIP-seq_H2AFZ_signal_p-value", "ChIP-seq_H2AK5ac_signal_p-value", "ChIP-seq_H2BK120ac_signal_p-value", "ChIP-seq_H2BK12ac_signal_p-value", "ChIP-seq_H2BK15ac_signal_p-value", "ChIP-seq_H2BK5ac_signal_p-value", "ChIP-seq_H3F3A_signal_p-value", "ChIP-seq_H3K14ac_signal_p-value", "ChIP-seq_H3K18ac_signal_p-value", "ChIP-seq_H3K23ac_signal_p-value", "ChIP-seq_H3K27ac_signal_p-value", "ChIP-seq_H3K27me3_signal_p-value", "ChIP-seq_H3K36me3_signal_p-value", "ChIP-seq_H3K4ac_signal_p-value", "ChIP-seq_H3K4me1_signal_p-value", "ChIP-seq_H3K4me2_signal_p-value", "ChIP-seq_H3K4me3_signal_p-value", "ChIP-seq_H3K79me1_signal_p-value", "ChIP-seq_H3K79me2_signal_p-value", "ChIP-seq_H3K9ac_signal_p-value", "ChIP-seq_H3K9me2_signal_p-value", "ChIP-seq_H3K9me3_signal_p-value", "ChIP-seq_H4K20me1_signal_p-value", "ChIP-seq_H4K8ac_signal_p-value", "ChIP-seq_H4K91ac_signal_p-value", "ChIP-seq_HDAC2_signal_p-value", "ChIP-seq_JUND_signal_p-value", "ChIP-seq_KDM1A_signal_p-value", "ChIP-seq_MAFK_signal_p-value", "ChIP-seq_MAX_signal_p-value", "ChIP-seq_MAZ_signal_p-value", "ChIP-seq_NRF1_signal_p-value", "ChIP-seq_POLR2A_signal_p-value", "ChIP-seq_POLR2AphosphoS5_signal_p-value", "ChIP-seq_RAD21_signal_p-value", "ChIP-seq_RCOR1_signal_p-value", "ChIP-seq_REST_signal_p-value", "ChIP-seq_RFX5_signal_p-value", "ChIP-seq_RXRA_signal_p-value", "ChIP-seq_SIN3A_signal_p-value", "ChIP-seq_SMC3_signal_p-value", "ChIP-seq_SP1_signal_p-value", "ChIP-seq_SUZ12_signal_p-value", "ChIP-seq_TAF1_signal_p-value", "ChIP-seq_TARDBP_signal_p-value", "ChIP-seq_TBP_signal_p-value", "ChIP-seq_TCF12_signal_p-value", "ChIP-seq_USF1_signal_p-value", "ChIP-seq_USF2_signal_p-value", "ChIP-seq_YY1_signal_p-value", "ChIP-seq_ZBTB33_signal_p-value", "ChIP-seq_ZFP36_signal_p-value", "DNase-seq_read-depth_normalized_signal", "RAMPAGE_minus_strand_signal_of_all_reads", "RAMPAGE_plus_strand_signal_of_all_reads", "microRNA-seq_minus_strand_signal_of_all_reads", "microRNA-seq_plus_strand_signal_of_all_reads", "polyA_RNA-seq_minus_strand_signal_of_all_reads", "polyA_RNA-seq_plus_strand_signal_of_all_reads", "polyA_depleted_RNA-seq_minus_strand_signal_of_all_reads", "polyA_depleted_RNA-seq_plus_strand_signal_of_all_reads", "small_RNA-seq_minus_strand_signal_of_all_reads", "small_RNA-seq_plus_strand_signal_of_all_reads", "total_RNA-seq_minus_strand_signal_of_all_reads", "total_RNA-seq_plus_strand_signal_of_all_reads" ], "n_assay_factors" : 256 }