All functions |
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ENMdetails class |
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Automated runs and evaluations of ecological niche models |
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Tune ecological niche model (ENM) settings and calculate evaluation statistics |
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ENMevaluation class |
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ENMnull class |
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Generate null ecological niche models (ENMs) and compare null with empirical performance metrics |
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Calculate AICc from Maxent model prediction |
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Build metadata object from ENMeval results |
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Example occurrence dataset. |
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Calculate 10 percentile threshold |
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Calculate Similarity of ENMs in Geographic Space |
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Clamp predictor variables |
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Corrected variance function |
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emp.bg generic for ENMnull object |
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emp.bg.grp generic for ENMnull object |
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emp.occs generic for ENMnull object |
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emp.occs.grp generic for ENMnull object |
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enm.args generic for ENMdetails object |
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ENMdetails bioclim |
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enm.errors generic for ENMdetails object |
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enm.fun generic for ENMdetails object |
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ENMdetails maxent.jar |
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ENMdetails maxnet |
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enm.msgs generic for ENMdetails object |
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eval.name generic for ENMdetails object |
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enm.ncoefs generic for ENMdetails object |
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enm.predict generic for ENMdetails object |
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enm.varimp generic for ENMdetails object |
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Example ENMevaluation object. |
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eval.algorithm generic for ENMevaluation object |
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eval.bg generic for ENMevaluation object |
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eval.bg.grp generic for ENMevaluation object |
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eval.clamp.directions generic for ENMevaluation object |
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eval.doClamp generic for ENMevaluation object |
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eval.models generic for ENMevaluation object |
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eval.occs generic for ENMevaluation object |
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eval.occs.grp generic for ENMevaluation object |
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eval.occs.testing generic for ENMevaluation object |
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eval.other.settings generic for ENMevaluation object |
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eval.overlap generic for ENMevaluation object |
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eval.partition.method generic for ENMevaluation object |
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eval.partition.settings generic for ENMevaluation object |
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eval.predictions generic for ENMevaluation object |
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eval.results generic for ENMevaluation object |
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eval.results.partitions generic for ENMevaluation object |
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eval.rmm generic for ENMevaluation object |
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eval.taxon.name generic for ENMevaluation object |
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eval.tune.settings generic for ENMevaluation object |
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eval.variable.importance generic for ENMevaluation object |
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Similarity histogram plots for partition groups |
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Similarity maps for partition groups |
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Partition group plots |
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ENMnulls statistics plot |
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ENMevaluation statistics plot |
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Look up ENMdetails abject |
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Look up version of maxent.jar |
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null.algorithm generic for ENMnull object |
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null.emp.results generic for ENMnull object |
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null.mod.settings generic for ENMnull object |
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null.no.iter generic for ENMnull object |
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null.other.settings generic for ENMnull object |
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null.partition.method generic for ENMnull object |
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null.partition.settings generic for ENMnull object |
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null.results generic for ENMnull object |
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null.results.partitions generic for ENMnull object |
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Methods to partition data for evaluation |
Find NA cells in a RasterStack |
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Calculate Multivariate Environmental Similarity |
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Iterate tuning of ENMs |