sample_id	X.gene1	gene2	strand1.gene.fusion.	strand2.gene.fusion.	breakpoint1	breakpoint2	site1	site2	type	direction1	direction2	split_reads1	split_reads2	discordant_mates	coverage1	coverage2	confidence	closest_genomic_breakpoint1	closest_genomic_breakpoint2	filters	fusion_transcript	reading_frame	peptide_sequence	read_identifiers
X09	TCF7	SPI1	+/+	-/-	5:134138164	11:47360040	splice-site	splice-site	translocation	downstream	downstream	152	206	42	971	685	high	.	.	duplicates(39),mismappers(1),mismatches(12)	CAGGGATCCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGATGGCGCGCGCGCTGCGCAACTACGG	in-frame	GIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQ|dHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNY	.
X09	TCF7	SPI1	+/+	-/-	5:134116033	11:47360040	splice-site	splice-site	translocation	downstream	downstream	4	0	16	751	685	high	.	.	.	CGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAG	out-of-frame	GVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|titgtstpttctassrasprttsrssracsprscssstatwswsrctssippwchpipvlatrsptcpgcassthpcpqp	.
X09	TCF7	SPI1	+/+	-/-	5:134138237	11:47360040	splice-site	splice-site	translocation	downstream	downstream	1	0	43	45	685	medium	.	.	duplicates(1),mismatches(1)	CCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAGGTACAAGCCTGGGATGGGGAGGGGCCCAGTGAAACCAGAGCCTAAGGGCCAAGACCCCAGCTTCTGAGACCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGG	out-of-frame	PSGAGQHPQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQgtslgwggaq*nqslraktpasetr|pllglppppraqrvrelrreqlhgaperaapaaaaalpphgagadarpryphgatpsqswppgllpapdvppvpipvpspaqlr*	.
X09	SPI1	TCF7	-/-	+/+	11:47375633	5:134138059	splice-site	splice-site	translocation	upstream	upstream	4	4	1	158	1079	medium	.	.	duplicates(1)	CTGCATTGGCCCCCACCGAGGCAGGGGATCTGACCGACTCGGAGCCCGGCTGGATGTTACAGGCGTGCAAAATGGAAGGGTTTCCCCTCGTCCCCCCT___CCATCAGAAGACCTGGTGCCCTATGACACGGATCTATACCAACGCCAAACGCACGAGTATTACCCCTATCTCAGCAGTGATGGGGAGAGCCATAGCG|CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG___TTCACAGGCCTCTGCAGACCCCTGACCTCTCTGGCTTCTACTCCCTGACCTCAGGC...GCAGCTCCCCCACtCTGTGAGCTG___GCCCAGCCCTCCTCTCTACCCCCTGTCCCCTTCCTGCGGATATAGACAGCACTTCCCTGCCCCCACTGCAGCCCCTGGCGCCCCCTACCCCAG___GTTCACCC	out-of-frame	MLQACKMEGFPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHS|aqgqsapprcpptlslrtfqqptshpctcghqpeassqasadp*	.
X09	TCF7	SPI1	+/+	-/-	5:134138164	11:47355546	splice-site	splice-site	translocation	downstream	downstream	0	1	1	971	948	medium	.	.	.	CAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGATGGCGCGCGCGCTGCGCAACTACGGCAAGACGGGCGAGGTCAAGAAGGTGAAGAAGAAGCTCACCTACCAGTTCAGCGGCGAAGTGCTGG	in-frame	NSPHPTPAPADISQKQ|gSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVKKKLTYQFSGEVL	.
X09	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	171	132	17	542	546	high	.	.	duplicates(30),low_entropy(46),mismappers(3),mismatches(4)	TGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTG	out-of-frame	WKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
X09	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	14	21	6	85	209	high	.	.	duplicates(1),low_entropy(3),mismappers(1),mismatches(2)	CTTTTATTTACGAGAAGAAATCTCCCCCTCG___...GAAAGACTGAT?TTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCC	.	.	.
X09	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	14	11	5	126	161	high	.	.	duplicates(1)	.	.	.	.
X09	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	7	1	0	23	14	high	.	.	.	TAAAAGTAGGTCTGCCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATC	.	.	.
X09	KANSL1	RP11-707O23.1(4469),RP11-707O23.5(3031)	-/-	./-	17:46170855	17:45597838	splice-site	intergenic	deletion	upstream	downstream	0	2	2	228	53	high	.	.	duplicates(1),mismatches(6)	CTTTGAGCAAACTGCCAAACTTGGAATCCTTGAGACCACGGAGCCAGTTGATGCTGACTCGAAAGGCTGAAGCTGCCTTGAGAAAAGCTGCaAGTGAGACCACCACTTCAGAGGGACTTAGCAACTTTCTGAAAAGCAATTCAATTTCAGAAGAATTGGAGAGATTTACAGCTAGTGGCATAGCCAACTTGAGGTGCAGTGAACAGGCATTTGATTCAGATGTCACTGACAGTAGTTCAGGAGGGGAGTCTGATATTGAAGAGGAAGAACTGACCAGAGCTGATCCCGAGCAGCGTCATGTACCCCT|AGACGTGGGAACAACGCAAGTCCCACTTACAACACTTAAGAACATTCTCATGATGACCGTTGAACTGGAAAAACT___GCTGTAGTTCCTCACTGAATATTGGTTGAAGACTTCATTGGCTTACTACCTGGACTTCTCCACACACTGCCTGAATGTCCTCCCCACATAGCTAGAGTGAATGAACTAAAAAAGAGAGAGAACACACACAGCCCAG	out-of-frame	LSKLPNLESLRPRSQLMLTRKAEAALRKAASETTTSEGLSNFLKSNSISEELERFTASGIANLRCSEQAFDSDVTDSSSGGESDIEEEELTRADPEQRHVPl|dvgttqvplttlknilmmtvelekll*	.
X09	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	12	26	6	132	77	medium	.	.	low_entropy(4)	G___...CCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTG...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTG	.	.	.
X09	SPNS3	RP13-580F15.2	+/.	-/.	17:4482892	17:4483872	intron	intron	duplication/3'-3'	upstream	downstream	14	11	5	126	161	medium	.	.	duplicates(1)	.	.	.	.
X09	MTAP	RP11-408N14.1	+/+	-/+	9:21818202	9:22210664	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	3	6	1	94	10	medium	.	.	low_entropy(1)	AAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTC...AAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GAAAAGAAAAATACGACACATAGCCATGATTGAAGACGTGTACCTTCATCTGAGAAGACATCTGCAAATATTCTGGTCACTATTAAACTATATCCAATT...___GAAAAGGAGCTGATTGTTAATGGAAGAAGGAAGAA...TATTTAAAGAAGAATTCACTCTGCTGAACGTGATAAGAAACAGAACTCAGAAAGAGGGACACCTAGAGGATG	out-of-frame	EGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|krkirhiamiedvylhlrrhlqifwsllnyiq	.
X09	ADAT1	ADAT1	-/-	-/-	16:75599307	16:75601146	3'UTR	intron	duplication	upstream	downstream	0	2	4	46	9	medium	.	.	.	TGTTTAGATGTCTCAATTATGTGAGACAGATTCCTGTTGTTATTTTGATTAAGCCTGTTTGTGTTGGTTTTCTGACTTACAATTGAAAGAGTTCTGTCCAAAAAGCCAAAAGGTGGCCAGGCTTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAAGCCCAGGCAGGCAGATCACTTGAGGTCAGG|CTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCTTCGGCCTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCACCATGCCTGGCCTAGAAAACTTTTAAACCAAAAAAGTAGACAGTTGTTTTTATTTTATCTGATTCCACTAGGACCATAGAAACCTAGAATTCTGTTCATTCTTAACTGTTTTAATTCATGTTGCTTTCTCGTGAATTCCCTACAAAGGAGACAGAGTTGCTCTAGGAAAGTGTCAAAAG	.	.	.
X09	TYK2	TYK2	-/-	-/-	19:10351410	19:10352181	intron	intron	duplication	upstream	downstream	0	2	2	53	61	medium	.	.	.	TATTACCCTATTTTACGGATGAGAAAACAGGCCCAGAGAAGTGAACTCAAATTCAAAGTCACACAGCTGAGAAGTGTAAGAGGTGGGATTGGAACCCATGCAGTCGATTTCATGAAGTTGCAGAGTGATTTCTTTTTCTTTTTTG...CACACTTGTATCCCAGGCTGGAGTGCAATGGCACAATCTCGGCTCACTGCAACCTCCGCCTCCCAG|GAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCTCCCGACTGCACTCCAGCTGGGTGACAGAGCGAGACTCCGTCTAAGACAGGACAGGAC?GAGAGAGAGAGAAAGAAAAGAAAGGAAAGAAAGGCATAGGCCGGGCGCGGTGGCTGACACCTGTAATCGCAGCACTTTGGGAGGCCGAGGCGGGCgGATCACGAGGTCAGGAGATCGAGA	.	.	.
X09	SLC25A44	SLC25A44	+/+	+/+	1:156197496	1:156195350	exon	intron	duplication	downstream	upstream	1	1	1	10	7	medium	.	.	.	CAGAACTTTGCCTCTAGCTCATTTTCCACAGCCTAGATTTTCCAATCTTGCCAATCCAGTTGACTTCTGTCTTCTCATTTCCAAGCCATTGTTCTCTCTCTTTCACTATCTACATGGATTATCCTTCATTCAAACTGCTTTGTCCCGGCcGGGTGCGGTGGCTCAT|GCCTCGGCCTCCCAAAGTGTTGGGATTATAGGCCCGGCCTCACCTCAGTTCTCGGAAGGTCAGCCCATCCTCGCTCCTGG...CAAATGCCATTGGTGGAATCGCTGACAGCTCATCCTCCGTCCCCCGCAGGGGGCGTTAATAACAGAGTCCAAATTTCCGGTTGCGGCAGTACCGGGAGCCGAGTGGATATGGAGGAAGATGCGACCAGCGGACGGCATTCGCTGGG	.	.	.
X09	LENG8-AS1	LENG8-AS1	-/.	-/.	19:54447846	19:54448737	intron	exon	duplication	upstream	downstream	0	2	1	14	35	medium	.	.	.	.	.	.	.
X09	NECAP2	NECAP2	+/.	+/.	1:16450882	1:16453152	exon	intron	duplication	upstream	downstream	0	2	1	26	14	medium	.	.	.	.	.	.	.
X09	UBA6	UBA6-AS1	-/+	+/+	4:67661227	4:67720422	intron	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	8	0	120	118	low	.	.	mismappers(3)	CTGAGGCAGGGATCACTTGAGCCCAGGAGTTCCAGGCCAGACTGGAAAACATAGGGAAACCCTGTTTTTTTGTTTTTTTTTAAAGTTGTTTCTAAGGAAGATGAACTTAAGATCCTAAAGAGAGGGAAAGACTAAAGAGAAGGCAACACACATTCCAGCAACTATATTTAACTGGAG___GCTCATAGGTGGAAGGGACTTGCCTTGCTCAGATAAGACTTTGGACATGGACTTCTGGATTAATGCTGGAATGAGCTAAGACTTTGGGGGACTGTTGGAAAGGTGTGACTGTGTTTTGAAAC|AAATCCTGGCTGACATTGACTTCTCCACTGCAACCATCGAGTTCATTGTCTCCTAAACCTTGCCATGGAGGCCTGTGGCACCTGAGCCAGCCATTATCATCACCAGCACTTCCATGAGCTACAAGCTGGACCCACTGCAGTCCTCCTGACACACTGAAATCAGAGCCTGCACACAaAGCAGCAGATGCTTCAATGcgAAGGTCATTTCCAGGTCCTTGACAGGCGTGCATCTGGGCCAGATCCATGGCAATAACCTTCAGGTTGAGGCTAGAGGGCTTCAGATGGGCAGCTTCGAATGACAGGAGCAAGGaACAAGAGGCCGGAAAGGGAGGGTGACATTTTCAG	.	.	.
X09	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	7	0	15	17	low	.	.	low_entropy(3),mismatches(2)	CTTCTGTTTTGGCTGGCAACAGACAGTCTGCAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAG...CACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___C	.	.	.
X09	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	4	1	67	223	low	.	.	.	TATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTG	out-of-frame	YADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
X09	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	81	223	low	.	.	low_entropy(1)	GTTAAAAATTCTTACAACAGCcTTATTTTCTGTGTCTATGCTTAGTA...GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTG	in-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLI	.
X09	LZTFL1	SLC6A20	-/-	-/-	3:45826255	3:45782229	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	8	468	16	low	.	.	mismappers(5)	GGAGAATCTGGCGACAGCCAAGCACGATCTACTCAGGGTTCAGGAGCAGCTGCACATGGCTGAAAAG___...ATTTCAGCAAACAGCAGCTTATCGAAACATGAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGG...|...CCtCAGGTAGTTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCG___GGGTCGCCAGCGTGGTGGTCTCTTTCTTCCTCTCCATGTACTACAACGTCATCAACGCCTGGGCCTTCTGGTACCTCTTCCACTCCTTCCAG___GATCCCCT	.	.	.
X09	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	7	0	0	307	26	low	.	.	low_entropy(4),mismappers(4)	GTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTG...GAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGG	.	.	.
X09	ANP32B	HEMGN	+/-	-/-	9:97985267	9:97936264	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	1	4	2	14	9	low	.	.	.	CGGAAGGTCGGAAGAACGCACGCCCGCGACCCTCCATCTCGCAACCCCCGGAGCGGCCCACCCTCGCGGGCCCTCCGGGAAGGACAGCGCCGTGCGGTGGAGCCCGGCCCGCCCCGCGTTAGTGGTGACCTCAAAGACTAGAGAGCAAGGATTTAAAATGTCGAGCACACCAG|AAGTCATTGGAACCTGGAGTTTGAGAAACAGAGAACTACTTAGAAAAAGAAAAGCTGAAGTGCATGAAAAGGAAACATCACAATGGCTATTTGG___AGAACAGAAAAAACGCAAGCAGCAGAGAACAGGAAAAGGAAATCGAAGAGGCAGAAAGAGACAACAAAACACAGAATTGAAGGTGGAGCCTCAGCCACAGATAGAAAAGGAAATAGTGGAGAAAGCACTGGCACCTATAGAGAAAAAAACTG	.	.	.
X09	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	177	414	low	.	.	low_entropy(1)	GTCGCGCAGTGCGGGGATCCCCGCTTCAGTCGGCAGAGAGAGAGCTCGCGGGTGGTTCCGGTCCGGCTTTTCAGGCCGGACGGGTGCCTGCCCCTCAGGTGCGAGTTTGTGCGGTAAAGAACACAC...CTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAG	out-of-frame	lfgGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
X09	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	57	414	low	.	.	duplicates(1),read_through(12)	CCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG...CTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTcAAG	out-of-frame	lfgGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
X09	ADAT1	RP11-77K12.8	-/-	-/-	16:75599307	16:75601146	3'UTR	intron	duplication	upstream	downstream	0	2	4	46	9	low	.	.	.	TGTTTAGATGTCTCAATTATGTGAGACAGATTCCTGTTGTTATTTTGATTAAGCCTGTTTGTGTTGGTTTTCTGACTTACAATTGAAAGAGTTCTGTCCAAAAAGCCAAAAGGTGGCCAGGCTTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAAGCCCAGGCAGGCAGATCACTTGAGGTCAGG|CTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCTTCGGCCTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCACCATGCCTGGCCTAGAAAACTTTTAAACCAAAAAAGTAGACAGTTGTTTTTATTTTATCTGATTCCACTAGGACCATAGAAACCTAGAATTCTGTTCATTCTTAACTGTTTTAATTCATGTTGCTTTCTCGTGAATTCCCTACAAAGGAGACAGAGTTGCTCTAGGAAAGTGTCAAAAG	.	.	.
X09	PXDN(23260),MYT1L(21001)	PXDN	./-	-/-	2:1768112	2:1693134	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	1	90	209	low	.	.	mismatches(1)	GTGCAAGATACTAAAGGGGGCGCTTAGAAGAGGAGCTCAAAGGTGGCCTGGCGTCAGGGGCTGGAGGGCCTTTGACAGAGGCCGGGACTGAGGCTACAGCATCATCGGAGCGCTGGCCTTGGAAAGA|AGATCTTCGCTTTAACAGAATCAGAGAGATCCAACCTGGGGCATTCAGGCGGCTGAGGAACTTGAACACATT___GCTTCTCAATAATAATCAGATCAAGAGGATACCTAGTGGAGCATTTGAAGACTTGGAAAATTTAAAATATCT___CTATCTGTACAAGAATGAGATCCAGTCAATTG	.	.	.
X09	PPP1R3A	RP11-786A20.1(271259),PPP1R3A(154116)	-/-	./-	7:114075626	7:113722661	splice-site	intergenic	deletion/read-through	upstream	downstream	4	0	0	44	9	low	.	.	duplicates(1)	AGAATTGAGATCTCCCAACAACCATGTGACTGAACTTGGAAGCAGACCCTTCTTTCCCAGCTGAATCTTCTTGAGATGTCTGGAGCCCTGGCTAACAGCTTAATAACCTCAAGAGAGAATCTGGGCAAGAACGACTCAG|TTGAAGAACAGGAACTTTAATGTCCATGTGGGGATCCAAACACTGATACTCCAGAGTCTTACCAGAGAATCGTCTTTGGGATTGGTGGC	.	.	.
X09	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	2	0	65	5	low	.	.	low_entropy(1)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCT...GGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTaTGCCC	.	.	.
X09	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	76	93	low	.	.	.	CGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCAC?AGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATAC	.	.	.
X09	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	3	1	0	603	11	low	.	.	.	CAACAATACAGCTCGTGTTCGACAATATTCCTTGATGACAGCACAGCCATCCAGCATTATCTTACAATGACAATAATATC___...AAGTCAGTTTTAAG___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGG	.	.	.
X09	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47997739	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	603	3	low	.	.	.	ATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|TTCATGCCGTGGAGGAAGTGGTGAAGGAGGTGGTGGGACATGCCAAGGAGACTGGAGAGAAAG___CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGT	.	.	.
X09	TBCEL	TECTA	+/+	+/+	11:121060073	11:121101440	CDS	5'UTR	deletion/read-through	downstream	upstream	0	0	3	25	0	low	.	.	.	TGATAAACTAAATTCATTTCCCAAACTGGAAGAAGTGAGATTGTTAGGAATTCCTCTTCTGCAGCCATATACCACCGAGGAGCGAAGGAAATTGGTAATAGCCAG___ATTGCCATCAGTTTCCAAACTTAATGGCAGCGTTGTTACTGATGGTGAACGAGAAGATTCTGAGAGATTTTTTATTCGTTACTATGTGGATGTTCCACAGGAAGA...|...CAG___GATGAATTATTCATCATTCCTTAGAATTTGGGTCTCTTTCATCTTCGCACTTGTACAGCACCAAG___ATGGGAGAGCCTTCGTCGCCCCATTTTGGGCAGATGTGCACAATGGAATTCGAGGCGAG	.	.	.
X09	RN7SL569P(59871),RNY4(12931)	EZH2	./-	-/-	7:148950384	7:148847305	intergenic	splice-site	deletion/read-through	upstream	downstream	1	1	0	6	47	low	.	.	low_entropy(1),mismappers(2)	TCTAGTGCTGTTTTATGAAGAAGGTGCTTGCTGCTTCTTCCGCCGTGATTATAAATTTCCTGAGGCCTCCTCAGCCATGAGAACT___ACTCTTGCTCTGTTGCCGAGTGGAGGGCACTGGCATTGTGTCCGGAATTGGTGGGTTCTTGGTCTCACTGACATCAAGAATGAAGCTGCGGACCCTCGCG|AATAATCATGGGCCAGACTGGGAAGAAATCTGAGAAGGGACCAGTTTGTTGGCGGAAGCGTGTAAAATCAGAGTACATGCGACTGAGACAGCTCAAGAG...GTTCCAATCGTCAGAAAATTTTGGAAAGAACGGAAATCTTAAACCAAGAATGGAAACAGCGAAGGATACAGCCTGTGCACATCCTGACTTCTGTGAGCTCATTGCGCGGGACTAGGGAG___TGTTCGG	.	.	.
X09	GYPE	RP13-578N3.3	-/-	+/-	4:143880411	4:143841053	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	1	0	36	4	low	.	.	mismappers(1)	TCAAGTACCACTGGTGTGGCAATGCACACTTCAACCTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATG|AAAGAGCATGCTCCCTGTGTTGATGCAGTCGCCCCCCTCCCGGGCTTTGTTCTACACATGGATGTAACCTGCCACACACTGGAAGACACTAAGTTTGGAACCCATGTAATGTTCAACTAGTCAAAC	out-of-frame	SSTTGVAMHTSTSSSVTKSYISSQTN|eracslc*	.
X09	PDP1	CTC-788C1.2(45604),KB-1184D12.1(77384)	+/+	./+	8:93923260	8:94020380	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	2	42	2	low	.	.	.	CCCAGACCAGTTGAATGACAATGAATATACCAAGTTTATTCCTCCTAATTATCACACACCTCCTTATCTCACTGCTGAGCCAGAGG...|...AGGGTGCCCAAGGCTTTGCAATGGAGTGTATCATCCCAGGTTCATCTGTCGACTGGGTGAGCTTCATATATGAGCCTACAG___GGTCACCAGAAGAATTCAAGAAGCACTTGACTTTCCTCCTGCAAG	.	.	.
X09	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69084016	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	0	111	9	low	.	.	.	GCAGAACATGCGTGCGTTTGGCGGGATCCTGGTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAG	out-of-frame	QNMRAFGGILV|*	.
X09	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	1	1	0	80	16	low	.	.	.	CCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGT	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgs	.
X09	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	0	1	1	119	148	low	.	.	duplicates(1),low_entropy(1)	TTTTGtCACTGTATTTTTGGTGAATGTGTAGTAAGTAACTGGCCTCTTTAGTATCACAAAGCTGGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCC	.	.	.
X09	TMLHE	F8A2(36335),F8A3(37349)	-/-	./-	X:155492700	X:155419565	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	2	6	4	low	.	.	.	CATGAATATATTGAAGATGTTGGAGAATGTCACAACCACATGATTGGGATTGGGCCAGTCTTAAATATCTACCCATGGAATAAAGAGCTGTATTTGATCAG___A...|...CAGAGTGCTTCGCTCCTGGTGCTCTACAAGGACTATAGAGGCAACGTCAAAAGAAATAAAACTCTACATTGTTTGCAGATACAGCTACTTTGGGGAAACCTTGTTTCCCAGGAGTAAAGAAAC	.	.	.
X09	TBC1D22A	CERK	+/+	-/-	22:46762848	22:46721015	splice-site	splice-site	inversion	downstream	downstream	0	2	0	111	187	low	.	.	duplicates(1)	CAATTCTGGAAGCGCAGCAACAGCAAGCTCCCGGGCAG|ATGCCTGCTCTGTGCCTGTATCTGAGATCATCGCCGTTGAGGAAACAGACGTTCACGGGAAACATCAAGGCAGTGGAAAATGGCAGAAAATGGAAAAGCCTTACGCTTTTACAG___TTCACTGTGTAAAGAGAGCAC...ATGAGATTAACATAGACAAATACGACGG___CATCGTCTGTGTCGGCGGAGATGGTATGTTCAGCGAGGTGCTGCACGGTCTGATTGGGAGGACGCAGAGGAGCGCCGGGGTCGACCAGAACCACCCCC	out-of-frame	QFWKRSNSKLPGr|cllcaci*	.
XB37	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	18	20	14	108	95	high	.	.	low_entropy(4),mismatches(4)	GAGCCGGCTCCCCAGCCTGCTTTCTCCTGCCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...GCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...TTTTT...___...GTC...___...CTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCG	.	.	.
XB37	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	19	18	5	67	73	high	.	.	duplicates(2),low_entropy(3),mismatches(2)	GCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTCTGGGCCCGAGTGGGCTGAATCCCATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGACGGTG	out-of-frame	ANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
XB37	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	33	6	1	136	188	high	.	.	duplicates(4),low_entropy(9),mismappers(54),mismatches(2)	GCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___...GGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGC...ATACCTTTACAGGAATTTATACTTTTGAATCACTTATTAAAATACTTGCAAGGGGCTTTTGTTTAGAAGATTTCACATTTTTACGGGATCCATGGAATTGGTTGGATTTCACAGTCATTACTTTTG	.	.	.
XB37	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	9	8	5	102	188	high	.	.	low_entropy(1),mismappers(5),mismatches(3)	CCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAG	.	.	.
XB37	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	10	8	3	176	188	high	.	.	low_entropy(1),mismappers(3),mismatches(4)	ATTCCAGCTTCCTTTTTAACATAGGCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAG	.	.	.
XB37	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	8	7	3	116	188	high	.	.	duplicates(1),mismappers(3),mismatches(3)	ATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAAC	.	.	.
XB37	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	13	17	1	305	69	high	.	.	duplicates(2),low_entropy(3)	GGCGGCGGGAGCATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAA___GATCACCATTAACAAGGACACCAAGGTACCCAAtGCCTGCTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG___GTTTCA	in-frame	MNAPPAFESFLLFEGEKITINKDTKVPnACLFTINKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|TGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGF	.
XB37	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	13	17	1	305	69	high	.	.	duplicates(2),low_entropy(3)	GGCGGCGGGAGCATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAA___GATCACCATTAACAAGGACACCAAGGTACCCAAtGCCTGCTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG___GTTTCA	out-of-frame	MNAPPAFESFLLFEGEKITINKDTKVPnACLFTINKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|tgssdpycivkvdnepiirtatvwktlcpfwgeeyqvhlpptfhavafyvmdedalsrddvigkvcltrdtiashpkgf	.
XB37	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102624351	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	3	305	9	medium	.	.	.	ATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CCCCAGCTCTTCTCCTTCAAGCCCAGCTCAGGTGCCGCCTCTTCCAGGAAGCCCCCTGGGACCATCTCCAGTCTCAGTGGGAGCAGTGTGTCCTTGGTTGCTCCCAGAGTCTATAGCAGAGATCTGGACCCAAGACTCTGGACTCCCGGCTTTGGGCTGGCAGGTAACACCCACTCCTGGGGCTTCACTTGCC	in-frame	INKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|PSSSPSSPAQVPPLPGSPLGPSPVSVGAVCPWLLPESIAEIWTQDSGLPALGWQvtptpgasl	.
XB37	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	6	15	1	50	72	high	.	.	low_entropy(3)	CCAATACGTAACGGCGACCGTGCGCGGCTCTCTAGCACCACCCCCGCTCCCTGACTGGCGAGGTTTCTGACCAGTCAGCAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGAC...GGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGG	.	.	.
XB37	STIL	TAL1	-/-	-/-	1:47314036	1:47224098	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	50	112	low	.	.	.	CAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAGCAGAATGTGAA	.	.	.
XB37	LMO2	TRDC	-/-	+/+	11:33891795	14:22462932	splice-site	splice-site	translocation	upstream	upstream	7	8	4	31	387	high	.	.	duplicates(1),inconsistently_clipped(1)	CAAAGAACAGCAACGGGCCTTGAGCAGAATTGAGAAGGAAATACCCCCACCTGCCCTCAGCCGTTAAGTGGGCTTTGCTATTCACAAGGGCCTCTGGGTGTCCTGGCAGAGAGGGGAGATGGCACAGGCACCAGGTGCTAGGGTGCCAGGGCCTCCCGAGAAGGAACAGGTGCAAAGCAGGCAATTAGCCCAGAAGGTATCCGTGGGGCAGGCAGCCTAGATCTGATGGGGGAAGCCACCAGGATTACATCATCTGCTG|GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAACACGACAATAAAACTGTGCACTCCACTGACTTTGAAGTGAAGACAGATTCTACAG___ATCACGTAAAACCAAAG...AAAGAGCTGCCATAAACCCAAAG___CCATAGTTCATACCGAGAAGGTGAACATGATGTCCCTCACAGTGCTTGGGCTACGAATGCTGTTTGCAAAGACTGTTGCCGTCAATTTTCTCTTGACTGCCA	.	.	.
XB37	RP11-294C11.4	RP11-294C11.6	-/-	-/-	15:21718200	15:21703898	splice-site	splice-site	deletion/read-through	upstream	downstream	7	4	0	51	12	high	.	.	.	CACCCAACAACCACATCCGTCCTCTAGAGAATCCCCTGAGAGCTCAGCTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCTACAG|GAAGGAAAGCAGACCACATGGAAGCAGATGAAGGAAAAAGCAGACCACGTGGGAGCCGGATGAAGGGAAGGTTTCTATGAAATTGAAACAGCCTATCTGCCAGTGGAGAAAGTTATTTCATCC[t]TTTTTTGCCTGCAGTGAGAAAGGGGGAAATCAGAGCCACAGAGAAGAGAATGAAATGTCCCTGAGGACATCTGAGAATTAGAGAAAAGAAAGCCTCAGATTCTAAGGAGAAGTCCTCGCCACTTCCCATC	out-of-frame	MDWTWRILFLVAAAT|grkadhmeadegksrprgsrmkgrfl*	.
XB37	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	17	5	65	36	medium	.	.	low_entropy(1),mismappers(2),mismatches(1)	CCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAAT...GTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTG	.	.	.
XB37	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	20	1	0	716	91	medium	.	.	low_entropy(2),mismappers(1)	CTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAgTACCA	.	.	.
XB37	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	8	5	1	443	39	medium	.	.	low_entropy(1),mismappers(1)	CGCAGCTGCCGTTTCAGGCGAGGGGCGCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATGGGCCACCATGTGCCAGCACCATGCCTCCAAG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
XB37	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	5	9	0	1224	418	medium	.	.	.	TCTAGAATGAGTTTGCTCTGGAATTTTCTGATTCTTTGATGTTGCAAGGTGAAATAACTCATCAGTCAGCATCCACTCTAGCCTGAGATTTCACATCACTCCCTTAAGTCTGAAATAACATTCAC...TCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCG	out-of-frame	sltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqis	.
XB37	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	3	3	305	69	medium	.	.	.	ATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___...GCTGGAGGAGCGCTTtCGG___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGG	out-of-frame	LEERFRtcllplrllp*lsvs*glpshasctacrt|HWQQRPLLHREGGQ*	.
XB37	NAA16	NAA16	+/+	+/+	13:41376074	13:41373462	3'UTR	intron	duplication	downstream	upstream	2	1	2	109	32	medium	.	.	.	GTATACAACCCCACTGTATTATTTTCTTTAGATTCTGATTTCAGGATCTGTGCTTTGATTCCTTGTCTGTTTTATCGTATATTTGCTTGCTTTTTAATTAAAGCACATCAGTTTTAAAGTGTTAACTATATGTTAACAATATGGAGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCCAGACTGGCGGATCACCTG|TGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCATAAAGGGTTTTCAGTAGGTTTTTTTTTTTTCAAAGGACAGATCAAAAACAAAAAATCCAAATGTTTTTGTTTTTATAGTGTCTAATCATAGTAATCTTCCAGACATTGTGAGCAAAGTTCTATCTCAAGAAAT	.	.	.
XB37	ADAT1	ADAT1	-/-	-/-	16:75599312	16:75601151	3'UTR	intron	duplication	upstream	downstream	0	2	2	50	11	medium	.	.	.	CAAAGATCTAGTAACACTGTTTAGATGTCTCAATTATGTGAGACAGATTCCTGTTGTTATTTTGATTAAGCCTGTTTGTGTTGGTTTTCTGACTTACAATTGAAAGAGTTCTGTCCAAAAAGCCAAAAGGTGGCCAGGCTTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAAGCCCAGGCAGGCAGATCACTTGAGG|CCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCTTCGGCCTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCACCATGCCTGGCCTAGAAAACTTTTAAACCAAAAAAGTAGACAGTTGTTTTTATTTTAT	.	.	.
XB37	RPAP1	RPAP1	-/.	-/.	15:41518580	15:41520063	intron	3'UTR	duplication	upstream	downstream	0	2	1	13	12	medium	.	.	mismatches(1)	.	.	.	.
XB37	CCDC120	CCDC120	+/+	+/+	X:49069418	X:49066157	3'UTR	intron	duplication	downstream	upstream	2	1	0	57	6	medium	.	.	duplicates(1)	GGGaGGtcTGCCTGAAAGAGCCCAACCCCCTCTGTGCCCATGGCCTCTGCCCTGACCACCCCCAGTCAGGAGGCCCCACAGGAGGGGCACCCGGTAGATGCCAGTGAAATCCTCAGGTGAGGTCTGCCTACGGGCCACGGGCCACTCACCACTCACACCTTCCTTGGCTTTCCTTCCACCCTTTTTTTTTTCTCGAGACGGAGTCTTGCTCTGTCACC|AGGTTGCAGTGAGCTGAGATCAACATCGTGCCATTGCACTCCAGCCTGGGCGACAAGAGCGAAACTCCGTCTCAAAACAAACAAAAAAACAAAAG...GAGCAGGCATCTCGGTGGATAATGGGGTAGGAGTCAGTCTCCTCATTTGTGAAATGGAAATAATAATATCTGCCTTTGAAAGACATGGACATAATAAGTTCTGGTTAgCATATACTGAGTGCCTG	.	.	.
XB37	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	0	2	1	3	52	medium	.	.	duplicates(1)	GCCAACTTCCTTGAGGGTTCGTTCTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATT-CAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCT...ATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTG	.	.	.
XB37	LINC01226	LINC01225	+/.	+/.	1:31523625	1:31524544	exon	intron	duplication	upstream	downstream	7	3	5	129	89	low	.	.	.	.	.	.	.
XB37	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	3	3	305	69	low	.	.	.	ATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___...GCTGGAGGAGCGCTTtCGG___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGG	out-of-frame	LEERFRtcllplrllp*lsvs*glpshasctacrt|hwqqrpllhreggq*	.
XB37	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	1	223	27	low	.	.	low_entropy(1)	GCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCAC?CCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGG___GGACCAGGTTCTTCGAGTCCTGGCCAAAGATGAGAAGCAGCTTTCACTTCTC	out-of-frame	pllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacra?leagralghppwtgghswssalswqqlwak*	.
XB37	CPA4	CPA5	+/+	+/+	7:130312122	7:130346393	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	223	32	low	.	.	.	GGGGGGCTGAGAATCTTCCAAACCATCCCAGAGCAGAGCAGCTGAGGAAGGTCAAGCTTCAGGATCGATTTTTTCTCACTCCACGGATTCCCCCTTCCCAGGACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GCTGGGCTTTCCAGCCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAG...AGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGG___GGA	out-of-frame	gaenlpnhpraeqlrkvklqdrffltprippsqDKVARLAAKALASVSGTEYQVGPTCTTV|cwafqplgavls*	.
XB37	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	223	24	low	.	.	.	ATCCCAGAGCAGAGCAGCTGAGGAAGGTCAAGCTTCAGGATCGATTTTTTCTCACTCCACGGATTCCCCCTTCCCAGGACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCG	out-of-frame	praeqlrkvklqdrffltprippsqDKVARLAAKALASVSGTEYQVGPTCTTV|caag*	.
XB37	CPA4	CPA5	+/+	+/+	7:130312122	7:130349975	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	223	27	low	.	.	duplicates(1)	CTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGGACTTCTGGCGTGGCCCAGCCAGG	out-of-frame	*wDKVARLAAKALASVSGTEYQVGPTCTTV|cgllawpsq	.
XB37	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	4	0	127	211	low	.	.	.	GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGC	out-of-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
XB37	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	5	0	173	211	low	.	.	.	AAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTC	in-frame	ILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKS	.
XB37	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	6	0	109	11	low	.	.	mismatches(1)	GTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTG	.	.	.
XB37	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	2	0	126	357	low	.	.	.	GGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
XB37	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	60	357	low	.	.	read_through(10)	GGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCG...GAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTT	out-of-frame	KNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
XB37	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	0	106	217	low	.	.	duplicates(1),mismatches(1)	GTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAG	.	.	.
XB37	LMO2	AE000661.37	-/-	-/+	11:33891794	14:22463013	intron	exon	translocation/5'-5'	upstream	upstream	0	0	4	31	394	low	.	.	.	CAAAGAACAGCAACGGGCCTTGAGCAGAATTGAGAAGGAAATACCCCCACCTGCCCTCAGCCGTTAAGTGGGCTTTGCTATTCACAAGGGCCTCTGGGTGTCCTGGCAGAGAGGGGAGATGGCACAGGCACCAGGTGCTAGGGTGCCAGGGCCTCCCGAGAAGGAACAGGTGCAAAGCAGGCAATTAGCCCAGAAGGTATCCGTGGGGCAGGCAGCCTAGATCTGATGGGGGAAGCCACCAGGATTACATCATCTGCTGG...|...CCAAGGATATAAGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAG	.	.	.
XB37	POLR2M	POLR2M(71490),ALDH1A2(99172)	+/+	./+	15:57777745	15:57854252	splice-site	intergenic	deletion/read-through	downstream	upstream	2	2	0	90	7	low	.	.	.	CTGGGAGGTGATGAGTCACGGTTGGCTCTAAAGCCCAAGCTCTTTTCTTCACACCTTGATGCCGTCTAGCCTGTCCATGGACCAATTAGAGCCAGTGACCAACAG|GTGAAGATCCCCTGACCTGCTGCACATGATATATGATTGCTGTTGTTACAAAAGGGCAGAAATATGCCTTGAGTATTTCCTCTGACCATCAAACCTTCAGGGCAAGAGGAAGACCCTGAATGAACTGCTCAGCAGAGAAAGATACAAAGTCCTAGAAATGCATTCCTAGACCAAAGGAAACAGAGCAGCT	.	.	.
XB37	PEX11B	PEX11B	-/.	-/.	1:145915864	1:145917241	intron	intron	duplication	upstream	downstream	0	4	0	33	15	low	.	.	.	.	.	.	.
XB37	RP11-404O13.5(1073),CD1A(49187)	CD1C	./+	+/+	1:158204950	1:158291134	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	0	13	65	low	.	.	low_entropy(1)	CTTCATTGCTCATCAGAGGATTCCGGCGAG___GGTCTCGCTCTGTGCAGTGGTGTGATCTTGGCTCACTTTAGCCTCAACCTCCCGAGTAGCTGGGATTACAG|CATCCCAGGAACACGTCTCCTTCCATGTCATCCAGATCTTCTCATTTGTCAACCAATCCTGGGCACGAGGTCAGGGCTCAGGATGGCTGGACGAGTTGCAGACTCATGGCTGGGACAGTGAATCAGGCACAATAATTT...CCTGCATAACTGGTCCAAGGGCAACTTCAGCAATGAAGAGTTGTCAGACCTAGAGTTGTTATTTCGTTTCTACCTCTTTGGATTAACTCGGGAGATTCAAGACCATGCAAGTCAAGATTACTCGAA...GAAGTACAGGTGAAAGCGGGCTGTGAGCTGCATTCTGGAAAGAGCCCAGAAGGCTTCTTTCAGGTAGCTTTCAACGGATTAGATTTACTGAGTTTCCAGAATACAACATGGGTGCCATCTCCAGG	.	.	.
XB37	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	2	2	0	93	5	low	.	.	.	TGGAGAATGGCTTCAAGGCCCTGAGAAGCACCATTGATGCCGTGAGTGGGTGGAGATGAGGGGCTGGGGGCCTGGCTCACTCTCCCTGCCCCGCCCCACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAACTGTGAGACAT	.	.	.
XB37	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87037303	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	1	0	3	173	127	low	.	.	.	CTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTGGACATTGTGAGGAACATCCAGCTCTGTGGACGTTGGGGGTAAGAGAGCAGGAATGCGAATGCTAAGAAGCCGAG	out-of-frame	NVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|anrtsavcl*	.
XB37	ADAT1	RP11-77K12.8	-/-	-/-	16:75599312	16:75601151	3'UTR	intron	duplication	upstream	downstream	0	2	2	50	11	low	.	.	.	CAAAGATCTAGTAACACTGTTTAGATGTCTCAATTATGTGAGACAGATTCCTGTTGTTATTTTGATTAAGCCTGTTTGTGTTGGTTTTCTGACTTACAATTGAAAGAGTTCTGTCCAAAAAGCCAAAAGGTGGCCAGGCTTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAAGCCCAGGCAGGCAGATCACTTGAGG|CCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCTTCGGCCTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCACCATGCCTGGCCTAGAAAACTTTTAAACCAAAAAAGTAGACAGTTGTTTTTATTTTAT	.	.	.
XB37	AC011893.3	MCM6	+/+	-/+	2:135820639	2:135846146	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	3	0	1271	78	low	.	.	low_entropy(1),mismappers(1)	CAAAGCCTGAGGTACAGCTGCTGCTGCGGGTCTGTTGATCTGAACTGCTGATTTGAAGTGGATTGAGAGGATGGAACAATAGAAGGAGGATATGGCTCAGGACAGTCAAGTACTGGAAGAGGAAAGGTACAAAGAGGTGTTGGCACTGAATGACCCTGAACAGGGCTGCACTGGAAATATCAGAG|AACAACACGAAGTTTGGCAATCACAAGTGGCCTATGTGAACAGAGCTTACAGAAGTGACCGAGCATGTAAGCAGTACCAG___ATGAAGTCTCACCCAGTCGCTCAGGCTCG	.	.	.
XB37	C6orf183	CCDC162P	+/+	+/+	6:109270176	6:109285976	exon	splice-site	deletion/read-through	downstream	upstream	2	1	0	4	4	low	.	.	mismappers(1)	GGATGATAACCAAATTGGCAAATTTAGTTTTTACACAAAGGAAGCCATTCTTAAG___CTTTTGCTGCATTCAGGAGTGGAAAATATGCAGGTGACTCTTGCATGCCAAGCTGCTCAGAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGCACCCCTCAAGGGAGCTGTCCTGCTAATGTCAAG|GATGAAATTGGAAAAGTCAAGAGAGATGTTATGGTTGAATATTGTCAGAA___GTTTAACCACCGCATGTCTCACTATGCTCTTCGGGGTCAGATCATGGCATACTGCAATAGCCTGAGAGATCTTCTGGAAGATTTTCCTACCATCAGGG	.	.	.
XB37	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	115	4	low	.	.	.	TTGGGATCAACTTGTTTAGAGGCGTCATTGTGGCTCTTCCTGGAAACAGCAG___CCTGGCCCCTGCCtATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGA	out-of-frame	GINLFRGVIVALPGNSSLAPAyGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
XB37	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606353	intergenic	intron	deletion/read-through	downstream	upstream	0	2	1	16	15	low	.	.	.	.	.	.	.
XB37	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	1	2	0	4	5	low	.	.	.	TATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACC	out-of-frame	IAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaal	.
XB37	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	intron	deletion/read-through	downstream	upstream	0	2	1	4	5	low	.	.	.	CCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAAT	in-frame	PEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEE	.
XB37	LARP1	CNOT8	+/+	+/+	5:154811640	5:154858639	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	2	429	109	low	.	.	.	GTTATGGCCTGGAAAAGAAGTTCCGGCTGGACATATTCAAGGATTTTCAGGAGGAAACGGTGAAGGACTATGAAGCTG___GCCAACTGTATGGGCTGGAGAAGTTCTGGGCCTTCTTGAAATATTCCAAAGCCAAAAATTTGGACATTGACCCCAAACTGCAAGAATACCTCGGCAAATTCCGACGTCTTGAAGACTTCCGAGTAGAT|GAGCAGATCCGGGGTAGAGGGAAAAGAGCTCCGGGCCAGGGGCTG	out-of-frame	YGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVD|eqirgrgkrapgqg	.
XB37	LINC00977	LINC00824(252636),AC068570.1(2479)	-/-	./-	8:129223218	8:128817315	intron	intergenic	deletion	upstream	downstream	0	0	3	72	3	low	.	.	.	CACACCCAAGTGCAATGTTCAAT___CATCTACTTGTTTCCAAAGTTATTTGGGTCAGCATTTTCCTCCACCCACCACTTAAAACTGATTTGTTTCATACATTTGAAATGTATGAAAAGCCAGAAATCCAGGACCCACCCTGGCCTGCTCCCTTTTTCTCACCTACTGTGTTAAGGTA...|...AAG___GTACTGAAGGCTTTGATGGGAGAAAGCATCTCATTTCCCATTTCTGAG___AAACAGAAAAATAAGACCTGAATAAAGCCCATGACAATCAATTTGAAACTACTCTCAAAACCAAGAGGCCAAC	.	.	.
XB37	RP11-12A20.6	FAM27E3(1662),RP11-12A20.13(1044)	+/+	./+	9:67723940	9:67720840	exon	intergenic	duplication	downstream	upstream	3	0	0	37	6	low	.	.	.	CACAAACGCACAGAGAGTGGGAgAGAAACACACAGAGACTGAGAGACAGAGAGAGAAGAGAGAATGGGAG--ACACACACACACACACACACACACACACACACACGCAGAGTCATACAGCAGAGGCATTGAAACACACACCCCCAGGCAACCCCTGAGGCTGCGGGGTTCTGCTCTGGAGGAGAACGACCCTCGGGTGAGAGAGCAG|AACATCACAGCCTCAGGGATTGCTTGGGGGTGTGTTTTTCAATGCCCT	.	.	.
XB37	FRDAP(110396),RNA5SP388(7129)	NRXN3	./.	+/.	14:78170674	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	1	0	1	1	4	low	.	.	low_entropy(1),mismappers(1)	.	.	.	.
XB37	KIAA1324L	GRM3	-/-	+/-	7:86891724	7:86860648	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	0	1	1	57	1	low	.	.	.	CAAAAGAGTGTGAACTCCCGGCTGCAGACAGTTGTGCTATCATGGAAGGAGAAGATAATGAAGAGGAAGTTGTATATTCCAATAAACAGTCACTACTAGGAAAACTCAAATCTTTGGCAACCAAG|GGACATTCAAAGGAGCAACCTATGTCTAAACTCTTTGAGAGGAAGATAATACAAATTCAAGGTCTTCTTACAAGAAATAGCAACAGCAAAAAAT	out-of-frame	KECELPAADSCAIMEGEDNEEEVVYSNKQSLLGKLKSLATK|ghskeqpmsklferkiiqiqglltrnsnskk	.
XB37	PPP1R15B	NAA25	-/-	-/-	1:204409492	12:112033379	splice-site	splice-site	translocation	upstream	downstream	0	1	1	212	90	low	.	.	.	GTGAATGTCCAGACTCGGTACAGCGTGACGTTCTTTCTGGAGGAAGACACACACATGTCAAAAGAAAAAAG|CCACCTGTCTTTACCAGTTTCCAAGACTATGTTACTGGGCTTCAGACTTTAATTT...AGAACTTATTTTAGAAGACACTTCTCTCTCACCG___GAAGAGAGAAAATTTTCAAAGACTGTGCAAGGGAAGGTGCAGAGCAGTTATCTGCACTCACTTCTGGAAATGGGGGAGCTGCTGAAAAAAAG	in-frame	ECPDSVQRDVLSGGRHTHVKRKK|PPVFTSFQDYVTGLQTLI	.
XB37	GFRA4	LINC01089	-/-	-/-	20:3663354	12:121799956	splice-site	splice-site	translocation	upstream	downstream	0	1	0	140	1029	low	.	.	.	AAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|GTTCTGGGCCGGAGAAGGGGC...CCTCCCACTAAG___GAATTCCTGGTGACTGGAAGGGGGAGTGACTCAGGCCCTCAACCTCTAGCAGGTAAGGGtGCTACCTCCTGGGTGGGCATGCCCAGTTCCTCAGTGGGCCCAGCGCGGCCCAGC	out-of-frame	MVRCLGPALLLLLLL|gsgpekg	.
XB37	GFRA4	LINC01089	-/-	-/-	20:3663354	12:121796242	splice-site	splice-site	translocation	upstream	downstream	0	1	0	140	1214	low	.	.	.	GTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|GAATTCCTGGTGACTGGAAGGGGGAGTGACTCAGGCCCTCAACCTCTAGCAGGTAAGGGtGCTACC...TCCTCAGTGGGCCCAGCGCGGCCCAGCCTCCGAGGAAGCTCTGAGCAGCTGGCTTGGCTCCGAGGTATTTTTAGCTACAGATCCAGCCCCCCTCCATCACCACAACAGTCGAGTCCAAATCAAAC	out-of-frame	MVRCLGPALLLLLLL|gipgdwkge*	.
XB37	ACTL6A	MRPL47	+/+	-/-	3:179570241	3:179601790	splice-site	splice-site	inversion	downstream	downstream	1	0	0	443	354	low	.	.	.	GACGGAAGCACATTAATGGAAATAGATGGCGATAAAGGCAAACAAGGCGGTCCCACCTACTACATAGATACTAATGCTCTGCGTGTTCCGAGGGAGAATATGGAGGCCATTTCACCTCTAAAAAATGGGATGG|GAGCAGCATGGACCTGTCAGCAACTAAG	in-frame	DGSTLMEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGM|gAAWTCQQL	.
XB37	MRPL47	ACTL6A	-/-	+/+	3:179602652	3:179573369	splice-site	splice-site	inversion	upstream	upstream	0	1	0	330	491	low	.	.	.	AAAGGACTAGAAGAATTTTTTGATGACCCAAAAAACTGGGGGCAAGAAAAAGTAAAATCTG|TTGAAGACTGGGATAGTTTCCAAGCTATTTTGGATCATACCTACAAAATGCATGTCAAATCAGA...GGTCGTTCTACT-GGCTGATTTTGGACAGTGGAGCCACTCATACCACTGCAATTCCAGTCCACGATGGCTATGTCCTTCAACAAG___GCATTGTGAAATCCCCTCTTGCTGGAG	in-frame	KGLEEFFDDPKNWGQEKVKS|vEDWDSFQAILDHTYKMHVKS	.
XB41	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	27	3	1	80	115	high	.	.	duplicates(1),low_entropy(6),mismappers(25),mismatches(1)	CCAACACCAAG___...GGCAAATCATGCTACATGCA?TTTTTCCAG___...GTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTT	.	.	.
XB41	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	9	8	3	75	115	high	.	.	mismappers(3)	CTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCA?TTTTTCCAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGAC	.	.	.
XB41	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	11	7	1	164	115	high	.	.	duplicates(2),mismappers(1),mismatches(2)	CAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCA?TTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTT	.	.	.
XB41	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	9	15	1	41	36	high	.	.	.	CAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAGGTCTGTGTGATAAAAGAAGAGCCTTGGG...___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGAT	out-of-frame	GLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichdiskdskreywcpccddssapli*	.
XB41	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	6	5	4	34	23	high	.	.	mismatches(2)	GGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GGGGGGGAAAGACTGATTTTTTTTTTT?GTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGC...CCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGG...CATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCC	.	.	.
XB41	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	5	8	1	93	166	high	.	.	.	TGCTCAAGCACATAAGCACCTTGAAGTGTGTTACTAAGATACAAGAAACAGGTTTGCTTTTGCCTATTCCAGCATGGTGTACCTCTCTTAGGATACCTTTTAGCACAGGTAGCAGAATACCAGCCAGCCTCCTGTGGCTCACAGCATTAAGATATTTAATCATCTGACATTACATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAAGGACAAGATGGAG	.	.	.
XB41	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	9	4	0	24	23	high	.	.	low_entropy(5),mismappers(1)	CATGGACCCACTGCGGTACCCTGTGCTGGTCACCCCAGTTCGGGTCGCCATCTCTCTGGTCTTAATTTGGGTCATCTCCATTACCCTGTCCTTTCTGTCTATCCACCTGGGGTGGAACAGCAGG...CTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCT	out-of-frame	LGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrt	.
XB41	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	4	8	0	27	25	high	.	.	low_entropy(1)	CAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGC	.	.	.
XB41	TPST1	TYW1	+/+	+/+	7:66292624	7:67183126	intron	splice-site	deletion	downstream	upstream	2	8	0	16	91	high	.	.	low_entropy(1),mismappers(3),mismatches(2)	CCTAAGCAAGCCTGGGCAATGGCGGGCGCCCCTCCCCCAGCCTCGtTGCCGCCcTGCAGTTTGATCTCAGACTGCTGTGCTAGCAATCAGCGAGAcTCCGTGGGgGTAGGACCCTCTGAGCCAGGTGTGGGATATAGTCTCGTGGTGCGCCGTTTCTTAAGCCgGTCTGAAAAGCGCAATATTcGGGTGGGAGTGACCCGATTTTCCAG|CAACAACGAACTGTCTACAGACTGACGCTCGTGAAAGCATGGAAtGTGGACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGaAATCCTGACTTCATCGAAGTGAAG___GGCGTTACCTACTGCGGAGAAAGTTCAGCAAGCAGTCTTACCATGGCCCACGTGCCCTGGCATGAGGAAGTGGTACAGTTTGTCCgCGAGcTGGTGGATCTGATCCCCGAATATGAAATTGCATGTGAACACGAACACTCTAATTGCCTCCTGATAGCACACAGAAAG___TTTAAAATTG	.	.	.
XB41	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	10	27	2	102	57	medium	.	.	duplicates(1),low_entropy(3),mismatches(1)	CCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATT...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG	.	.	.
XB41	CD1B	CD1C(1408),CD1B(32913)	-/-	./-	1:158329852	1:158295038	splice-site	intergenic	deletion/read-through	upstream	downstream	12	21	2	3817	62	medium	.	.	duplicates(1),low_entropy(2)	TCCGAGTCTACATCTTTGGATTCGCTCGAGAAGTACAAGACTTTGCCGGTGATTTCCAGATGAAAT___ACCCCTTTGAGATCCAGGGCATAGCAGGCTGTGAGCTACATTCTGGAGGTGCCATAGTAAGCTTCCTGAGGGGAGCTCTAGGAGGATTGGATTTCCTGAGTGTCAAGAATGCTTCATGTGTGCCTTCCCCAGAAGGTGGCAGCAGGGCACAGAAATTCTGTGCACTAATCATACAATATCAAGGTATCATGGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|GTCACAGGGTGACTAAGGGTGCAGGAGAGTCACCTAGGGCCTCCTGGTGCCAAGGAAATGAGCAATGGAAGCAGGACCCAAGCTGG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCTGGGCAATGGAATGTGTGGTGTTGGAAGCATTAGCCAGCTCCAGTCCTGACCACTGAAAATATCACATCTGATCATCTTACCCTGTGGTACCAACTTG	out-of-frame	RVYIFGFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQRQ|ghrvtkgagespraswcqgneqwkqdpswercncpis*	.
XB41	LINC01226	LINC01225	+/.	+/.	1:31523622	1:31524541	exon	intron	duplication	upstream	downstream	13	5	14	204	121	medium	.	.	duplicates(2)	.	.	.	.
XB41	XG	XG	+/.	+/.	X:2810797	X:2811716	intron	intron	duplication	upstream	downstream	13	0	9	313	78	medium	.	.	mismatches(1)	.	.	.	.
XB41	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	6	10	0	437	53	medium	.	.	low_entropy(2),mismappers(2)	CATgAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG___GTTTCAG	in-frame	mNKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|TGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGF	.
XB41	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	6	10	0	437	53	medium	.	.	low_entropy(2),mismappers(1)	CATgAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG___GTTTCAG	out-of-frame	mNKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|tgssdpycivkvdnepiirtatvwktlcpfwgeeyqvhlpptfhavafyvmdedalsrddvigkvcltrdtiashpkgf	.
XB41	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	2	10	1	248	25	medium	.	.	low_entropy(1)	CAAAAAGGCCCCAGATGCCGAGGAACTC___...TTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGG___GGACCAGGTTCTTCGAGTCCTGGCCAAAGATGAGAAGCAGCTTTCACTTCTCGGGGATCTGGAGGGCCTGAAACCCCAGAAG___GcGGAC	out-of-frame	llds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalswqqlwak*	.
XB41	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	248	29	low	.	.	.	AGACGGTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCACACCCTGGA	out-of-frame	tvvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|caag*	.
XB41	CPA4	CPA5	+/+	+/+	7:130312122	7:130361143	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	248	26	low	.	.	.	CAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|ATATATAGCTGGATTGACAACTTTGTAATGGAGCATTCCGATATTGTCTCAAAAATTCAGATTGGCAACAGCTTTGAAAACCAG	out-of-frame	KALASVSGTEYQVGPTCTTV|yi*	.
XB41	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	7	4	0	694	63	medium	.	.	low_entropy(1),mismappers(5)	TGAAGGTGCTGGGTGCCAACCTCTGGTGGCCG?ACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAG	.	.	.
XB41	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	5	3	2	116	181	medium	.	.	low_entropy(1)	CAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GgGG	out-of-frame	KNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
XB41	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	5	1	143	181	medium	.	.	low_entropy(1)	CTcTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTATCTCTGTTTCTG	in-frame	sAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVS	.
XB41	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	171	181	low	.	.	.	GAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTT[t]GCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTG	out-of-frame	NIQL|asrnrfs*	.
XB41	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482896	17:4483875	intron	intron	duplication	upstream	downstream	0	2	1	7	14	medium	.	.	.	.	.	.	.
XB41	EXOSC2	EXOSC2	+/+	+/+	9:130704315	9:130700564	3'UTR	intron	duplication	downstream	upstream	0	2	1	81	23	medium	.	.	.	CACTGTCATTCACAAGGCACAGTGCCCCATGAAATTGCCCCAATAGAAAACATGGCATCCCTGACCTCCAAATGGTCTGTTTTGGCCTCCATTCCTATATCCTTTAAATGACTGAGAATGCAGCTG...GAATAAAGTTAACCAAGCAGGCCAGGCACGGTGGCTCACGCCTATAATCCCAGCACTTAGGGAGGCCAAGGCGGGCAGATCACCTGA|GGTCAGGCTGGTCTAGAACTCCTGACCTCAGGTGATCGACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCTGGCCTTCTGTCTGTATTTTTAAAAAAAAGATATTCATGACAACCAAGGGGAG	.	.	.
XB41	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	116	31	medium	.	.	low_entropy(2),mismatches(1)	GTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATAC...GTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCGAGGATTTAGCTAGCTGGTGACGCCGGAGCACGAAGTTGTACAGGTAGCCAGCAGCACCCACGCGAGCCCGCGGTTACCCTGGCCGCGCGGCTACTG	out-of-frame	VLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
XB41	PAFAH2	PAFAH2	-/-	-/-	1:25961099	1:25987478	3'UTR	intron	duplication	upstream	downstream	1	1	1	169	25	medium	.	.	.	CTTTGGGGGTTTTGCTAAGTGTATCTTGATAGGAAACAACAAAAGCAGGTTGAGATGGGGAAGATGACAGAACAACAGTGTTAAATGGCCATTTGCACAGGCCTTTGCCACAACAGAGAAGTAGTTTGGTCAGCTAAAACTCAGCTGCAGCCTGGACAGTAGAGCGAGACCCCATCTTAAAAATAAAGAAGGCTGGG|ATTACAGGCGTGAGCCACTGCGCCCGGCCCCATGTGTTCTTATTTAAGCTTGTGAATGTTCTCTCTGTCTGTTCATCAACATATATGTCTAGTTTAGGTCCCAGAATGTTGCACATCTCAAAGGCATCTGTTTTTGCCTCTCAGCCCCCAAACCATTGTCCACATTGTAGCCATGGAG	.	.	.
XB41	MTDH	MTDH(263),Y_RNA(43280)	+/.	./.	8:97727043	8:97729033	3'UTR	intergenic	duplication	upstream	downstream	1	0	2	34	54	medium	.	.	.	.	.	.	.
XB41	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	3'UTR	splice-site	deletion/read-through	upstream	downstream	8	0	0	437	53	low	.	.	mismappers(1)	CAGCCCCCAGGAAGCCTTTACCAACGCCATCACCGACCTCATCAGcGAGCTGTCCCTGCTGGAGGAGCGCTTCCGG___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCAC	out-of-frame	SPQEAFTNAITDLISELSLLEERFRtcllplrllp*lsvs*glpshasctacrt|hwqqrpllhreggq*	.
XB41	CD1B	CD1E	-/+	+/+	1:158331459	1:158355300	5'UTR	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	7	0	1531	5335	low	.	.	duplicates(3),low_entropy(2),mismappers(14),mismatches(24)	AGTGACTCTTACCATGTTCACTGTTACCACCAGGAAAGAGAACAGCTAACAGTTGAAATGGCAGCAGCAGCATTTCACTGGGAGATGCAACTTCTTACTGGCAGAGCTG|ACCCCTTCGAGATCCAGATATTAGCTGGCTGTAGAATGAATGCCCCACAAATCTTCTTAAATATGGCATATCAAGGGTCAGATTTCCTGAGTTTCCAAGGAATTTCCTGGGAGCCATCTCCAGGAGCAGGGATCCGGGCCCAGAACATCTGTAAAGTGCTCAATCGCTACCTAGATATTAAGGAAATACTGCAAAGCCTTCTTGGTCACACCTGCCCTCGATTTCTAGCGGGGCTCATGGAAGCAGGGGAGTCAGAACTGAAACGGAAAG___TGAAGCCAGAGGCCTGGCTGTCCTGTGGCCCCAGTCCTGGCCCTGGCCGTCTG	.	.	.
XB41	LZTFL1	SLC6A20	-/-	-/-	3:45826252	3:45782219	3'UTR	CDS	deletion/read-through	upstream	downstream	1	1	6	1173	82	low	.	.	inconsistently_clipped(1),mismappers(3)	AAAAGAAATTTCAGCAAACAGCAGCTTATCGAAACATGAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGGtA|g|TTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCG___GGGTCGCCAGCGTGGTGGTCTCTTTCTTCCTCTCCATGTACTACAACGTCATCAACGCCTGGGCCTTCTGGTACCTCTTCCACTCCTTCCAG___GATCCCCT	out-of-frame	KKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED*n*rfpleattckhtssltsg|s|FLVPYIIMLIVEGMPLLYLELAVGQRMRQGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDP	.
XB41	INADL	INADL(12711),PIGPP2(12500)	+/.	./.	1:62138079	1:62176631	intron	intergenic	deletion/read-through	downstream	upstream	0	4	2	104	97	low	.	.	low_entropy(1),mismappers(14),mismatches(3)	.	.	.	.
XB41	MTAP	CDKN2A	+/+	-/+	9:21818202	9:21994151	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	0	6	0	41	12	low	.	.	.	CCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCCGTGAGCCGCGGGATGTGAACCACGAAAACCCTCACTCGCGGCGGGCCGCACGCGCGCCGAATCCGGAGGGTCACCAAGAACCTGCGCACCATGTTCTCGCCGCCTCCAGGGCCGAGCTCGGCAGCCGCTGCGCCGCCCTTTGGCACCAGAG___ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGA	out-of-frame	PGDIVIIDQFIDr|krllp*	.
XB41	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	0	107	260	low	.	.	low_entropy(2),mismatches(1)	AGAACCGTTG?TTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___...GAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTG	out-of-frame	GGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
XB41	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	48	260	low	.	.	read_through(14)	TCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCA...AAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
XB41	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	4	1	0	9	7	low	.	.	.	CAGAAG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATG	out-of-frame	QKPVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaalt	.
XB41	AC011893.3	MCM6	+/+	-/+	2:135820639	2:135846146	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	2	2	1	1335	48	low	.	.	.	CGGGTCTGTTGATCTGAACTGCTGATTTGAAGTGGATTGAGAGGATGGAACAATAGAAGGAGGATATGGCTCAGGACAGTCAAGTACTGGAAGAGGAAAGGTACAAAGAGGTGTTGGCACTGAATGACCCTGAACAGGGCTGCcCTGGAAATATCAGAG|AACAACACGAAGTTTGGCAATCACAAGTGGCCTATGTGAACAGAGCTTACAGAAGTGACCGAGCATGTAAGCAGTACCAG___TAAGAATCTCCTCCTGTTGGCACAAACTGGATTTCGGCAGATGTTTGGC	.	.	.
XB41	RPP30	HTR7	+/-	-/-	10:90894308	10:90749594	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	2	2	0	29	7	low	.	.	.	CCATGAACTATCAAAAGGAAAACAGAAATGTACTCCCTACATTTACAGTAAACTGTATACAAACATAGTAAACCAAGTAATCTGACCTATGAATGCACAAAGAGACAAAGAAATGAAGAGCTGAAAAAAGCCCAAAGAACCAAGGGCAGGAAGGTCTTTCAG|GTACCTTGGGATCACAAGGCCCCTCACATACCCTGTGAGGCAGAATGGGAAATGCATGGCGAAGATGATTCTCTCCGTCTGGCTTCTCTCCGCCTCCATCACCTTACCTCCACTCTTTGGATGGG	.	.	.
XB41	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	1	26	4	low	.	.	inconsistently_clipped(1),mismatches(1)	CAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGaTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGAC	out-of-frame	NSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|eiksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
XB41	Y_RNA(4459),RP11-973H7.1(9374)	CEP76	./-	-/-	18:12765277	18:12701113	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	282	55	low	.	.	.	TCCTGATTCACGGACAATGTCTCCTCCCTGTGTCCTCACATGGCCTCTACTCTGTGCGCACCTGGAGAGAGAGCGCCCCGTCCCTCCCTCTTCTGATGAGGTCACCAGCCCTATCAG|ATGGATGTCCATGGTAGAATAAGAGAAATCCTTGCTGAGACTATACGGGAAGAATTGGCACCTGATCAACAGCATTTATCAACAGAAGATTTGATCAAAGC	.	.	.
XB41	RP11-120D5.1	MID1	-/-	-/-	X:11055943	X:10677466	exon	5'UTR	deletion/read-through	upstream	downstream	0	0	3	27	0	low	.	.	.	CATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG___GTGCAGGACCGGAAGCAGAAGACAGAAAGTGGAGACCAGATGTTTGAAGCTGGGTAAAGGCAGGGATGGAGCAGGAACCGAGGAACAAACCTTG...|...AG___ATAGCTGATCAGCTTCCTTGGGTTTTGCTGATGACACAAGAGAGCTTTGCCTGAAGATGGAAACACTGGAGTCAGAACTGAC	.	.	.
XB41	CTD-2583A14.11	ZNF587	+/+	+/+	19:57868630	19:57860979	exon	3'UTR	duplication	downstream	upstream	0	3	0	17	43	low	.	.	mismappers(1)	CATAGCTTTAAGAAGTACCTGCAAGGGTCAGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATGGATCACCTGACGTAGAGAGTCCAAGGCCTGACAAACATGGAGAAATGTCATCCCTATTTAAAAAAATAAAAAAATTAGCCAAGTGTGGTGGCGCATGCCTGTAA|TCCCGAGTAGCAGGGATTACCGGTGTGCACCACCATGCCTGGATAACTTTTTTTTTTATTTCTATTAGCAATGGGGTTTCACCATGCTGGCCAGGCTTGTTATGAACTGACCTCAAGTGATCTGCCTGCCTCAGCTTCTCAGGTGTGACCTAC	.	.	.
XB41	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87036400	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	2	0	0	418	13	low	.	.	mismappers(1)	AAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTTTCTATCAACACCACGAGAGAAACACACCCTCCAGCCTGGGTCCCAGAATGAGGCAGGTGAGGCAGAACGGCAGCAGAACAGCCGGCTACACATCTACAGCCT	out-of-frame	RNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|gfyqhherntpsslgprmrqvrqngsrtagytsta	.
XB41	CLN5	MYCBP2-AS1	+/+	+/+	13:76996127	13:77075518	splice-site	exon	deletion/read-through	downstream	upstream	2	0	0	81	5	low	.	.	.	CCGACCTGAAATGGATGCCCCTTTCTGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGATGATGTTCACTGGAAGGAAAATGGGACATTAGTTCAAGTAGCAACTATATCAG|ATCTAACTCCAGTCCAATATCCCCTAAGAAGCCTTCTCTGACCACTCCAGGGCACAATGATCTCAAG___G	out-of-frame	RPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATIS|dltpvqyplrsll*	.
XB41	ITM2A	CTHRC1P1(48186),KIF4CP(97592)	-/-	./-	X:79366864	X:79225854	exon	intergenic	deletion/read-through	upstream	downstream	0	0	2	14	0	low	.	.	mismappers(1)	CCTGGGAGGGCCCCTCTTGCTCCTCTTACGCTGTCTCTGGGGTTTACCCGGTCGCCTCGGTTCTGTCTCCTTGCGGCACCTTCTGCTTACCGCACCCTCTGTCACTCTGCATTCCCGCGTGTCGTGCCATGTTCTGTCTGTTCCAGCTCACACCAGCTGTCCTG...|...C___ATGAGGTATCCAAAGTAATCAAATTCATGGAAACGGAAAGTTGATGGTGGTTATCCGGGA___CTGCTGTTTTCTTCGGTGCTGATGGAACTTCTTG	.	.	.
XB41	SMCR8	SMCR8	+/+	+/+	17:18325811	17:18322273	3'UTR	intron	duplication	downstream	upstream	2	0	0	62	6	low	.	.	.	GGGAAGCCCTGCCCCTCCCTATGCCCCCTTCACTCCGGGGAACTGAAACCTACTCTGAGTCTCACATCTCTAAACCTCAGTGCTGAGACCTATGCAGTGGGACTAATCTCATCAAGAATTTTCAGTTGAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAA|AGTGCTGGGATTACAGGTGTGAGCCATTGCACCTGGCCTGAACAAAGAGGTTTGTAATTCTAAGGCCCCACTGAAAGCTTGCC	.	.	.
XB41	TPCN2	RP11-554A11.7(26376),RP11-554A11.8(11758)	+/+	./+	11:69085930	11:69135470	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	2	63	3	low	.	.	.	AGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC...|...AGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTG	.	.	.
XB41	NKX2-1	TRDC	-/-	+/+	14:36518985	14:22462932	splice-site	splice-site	inversion	upstream	upstream	0	1	0	358	474	low	.	.	.	CGCCTCTGGCCCCGGATGGTACGGCGCCAACCCAGACCCGCGCTTCCCCGCCA|GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGG...GGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAACACGACAATAAAACTGTGCACTCCACTGACTTTGAAGTGAAGACAGATTCTACAG___ATC	in-frame	ASGPGWYGANPDPRFPA|rSQPHTKPSVFVMKNGTNVACLVK	.
XB41	NKX2-1	TRDC	-/-	+/+	14:36520053	14:22462932	splice-site	splice-site	inversion	upstream	upstream	1	0	0	208	474	low	.	.	.	AG___GGTTCGTCCCCAGACTCGCTCGCTCATTTGTTGGCGACTGGGGCTCAGCGCAGCGAAGCCCGATGTGGTCCGGAGGCAGTGGGAAGGCGCGGGGCTGGGAGGCCGCGGCGGGAGGGAGGAGCAGCCCCGGCAGGCTCAG|GAAGTCAGCCTCATACCAAAC	out-of-frame	MWSGGSGKARGWEAAAGGRSSPGRLr|ksasyq	.
XB41	DLEU2	RNASEH2B	-/-	+/+	13:50081823	13:50927407	splice-site	splice-site	inversion	upstream	upstream	1	0	0	183	1048	low	.	.	.	ATCAATCTAGCGGGAGAGACAGGATAACCTGTCCGAGAGTATAGCGCCACTATGACTCCGCCGGAAAAATTACTTTAAAAATCGCCAAAAATTACTTGGAGCAAAGGGCAGTCGGCGGAGCTTCGCCAAGGCTGGCGCAGTCG|AATATTTAAAAGATGCTTCAAAGAAGATGAAAAATGGGC	.	.	.
XB41	DLEU2	RNASEH2B	-/-	+/+	13:50075559	13:50969932	splice-site	splice-site	inversion	upstream	upstream	1	0	0	234	512	low	.	.	.	TTAAAAATCGCCAAAAATTACTTGGAGCAAAGGGCAGTCGGCGGAGCTTCGCCAAGGCTGGCGCAGTCG___GTTTTGACCTGTAGCAGAGAACCAATTCTGGAGAACAGCCTCACTTCTTTGATTGAATACTTACATAATGCATTGGAACATGACATGAGATTAAG|ATGGCAGCACAAAGACAGAAAAGGGGCAAGTGATGGTG	.	.	.
XB41	RCC1	INTS3	+/+	+/+	1:28508901	1:153761570	splice-site	splice-site	deletion	downstream	upstream	0	1	0	3323	319	low	.	.	.	GTAACTCTTATTTG___GAGAGAAGACGATCTGCACTTCGCATTTTGGCATTGACATTTAATTTTAGGGTCCTTTATATAGAAGGGAGA|ACACCTAGCTCCCCTGTTTGACAACCCTAAGTTGGATAAGGAGCTGCGGGCAATGCTGAGAGAGAAGTTTCCTGAGTTCTGCAGCTCACCCTCCCCACCTGTGGAAG___TCAAAATTGAGGAGCCAGTTTCCATGGAG	.	.	.
XB47	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	34	22	14	135	132	high	.	.	duplicates(1),low_entropy(8),mismatches(5)	GTTGGTGGCGAGAGGGGGAGGGGAGCCGGCTCCCCAGCCTGCTTTCTCCTGCCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...AGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...TGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAG	.	.	.
XB47	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	25	33	7	192	99	high	.	.	duplicates(2),low_entropy(4),mismappers(3),mismatches(3)	CAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCG	.	.	.
XB47	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	36	5	0	127	174	high	.	.	duplicates(2),low_entropy(7),mismappers(58),mismatches(3)	CTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCA?GGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCCTGCCCTTTACATTTTAACTCCCTTCAACCCTATTAGAAAATTAGCTATTAAGATTTTGG	.	.	.
XB47	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	11	7	2	143	174	high	.	.	low_entropy(1),mismappers(2),mismatches(3)	AGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAaGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTG...TGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGG	.	.	.
XB47	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	7	7	6	97	174	high	.	.	duplicates(1),low_entropy(1),mismappers(6),mismatches(2)	GTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCA?GGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGA	.	.	.
XB47	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	5	8	3	105	174	high	.	.	mismappers(3),mismatches(2)	GGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAgggTGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTG	.	.	.
XB47	AC013463.2	SCN2A	+/+	+/+	2:165091299	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	0	195	174	low	.	.	.	GCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATG	.	.	.
XB47	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	14	10	2	43	41	high	.	.	duplicates(1),low_entropy(4),mismatches(2)	CTTCAAGGTCGCCCGGGATCAGGCCAAGAGGATCAATCACATTAGCTCCTGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTT...CCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAG	out-of-frame	ILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
XB47	USP49	PRICKLE4	-/+	+/+	6:41792686	6:41789232	3'UTR	splice-site	duplication/3'-3'	downstream	upstream	11	3	5	90	1356	high	.	.	.	ATTTTTTGCAAAAGAACATCAGAACCAATGAAGGTACCATTTCAGGAGGAATCATTTTTGTTTGACTTCTGCTATATGTTGCCCAGCATTAGTCATTGTTTTGATAAAGACTAAAAGGCCTTTTCTCAACATTTGTGCTCTCCCAACCACCTGGGAAAGCAACCCTTCCACTCACAAGAGGTAACCTCAGATAGGGATATAGTATTCATTTAAGAAGGGGTAGCCCCCC?GCCTGATTTAAAAAGGCCCAAGTCAATGTATGGAACATGACAAGGGAAGTGAAAAACAATGGAGTACACAGTCTGCCTTGAAAAGCAGCCATTTGATGAAgAGTCACAAATACAAAGAATTTGGACATTGTAACATAATTTCAGAACTTGCTG|GAACTTGATACTAAATTTGGGACTCTTTGCTGCGGGAGTTTGGCTGGCCAGGAACTTGAGTGACATTGACCTCATGGCACCTCAGCCAGGGGTGTAGCCAAGTAG___ACAAATGGAATCCTGTGCTGAACCCGAATCTTCCAAAAAACAGCCTACAATCTGTGACCACCACAAGATGTGCCCTGATGGCAGCTGAAGTTTGATTCAGATGGGCACTTTTCTTCCCCTTCCCTGCCTAGTTTCCTTTTGTTCCTTGAGTCCACGCAGAATTCCATTCTCTGGTCAGCAGA	.	.	.
XB47	USP49	TOMM6	-/+	+/+	6:41792686	6:41789232	3'UTR	splice-site	duplication/3'-3'	downstream	upstream	11	3	5	90	1356	high	.	.	.	ATTTTTTGCAAAAGAACATCAGAACCAATGAAGGTACCATTTCAGGAGGAATCATTTTTGTTTGACTTCTGCTATATGTTGCCCAGCATTAGTCATTGTTTTGATAAAGACTAAAAGGCCTTTTCTCAACATTTGTGCTCTCCCAACCACCTGGGAAAGCAACCCTTCCACTCACAAGAGGTAACCTCAGATAGGGATATAGTATTCATTTAAGAAGGGGTAGCCCCCC?GCCTGATTTAAAAAGGCCCAAGTCAATGTATGGAACATGACAAGGGAAGTGAAAAACAATGGAGTACACAGTCTGCCTTGAAAAGCAGCCATTTGATGAAgAGTCACAAATACAAAGAATTTGGACATTGTAACATAATTTCAGAACTTGCTG|GAACTTGATACTAAATTTGGGACTCTTTGCTGCGGGAGTTTGGCTGGCCAGGAACTTGAGTGACATTGACCTCATGGCACCTCAGCCAGGGGTGTAGCCAAGTAG___ACAAATGGAATCCTGTGCTGAACCCGAATCTTCCAAAAAACAGCCTACAATCTGTGACCACCACAAGATGTGCCCTGATGGCAGCTGAAGTTTGATTCAGATGGGCACTTTTCTTCCCCTTCCCTGCCTAGTTTCCTTTTGTTCCTTGAGTCCACGCAGAATTCCATTCTCTGGTCAGCAGA	.	.	.
XB47	GFRA4	ATRN	-/-	+/-	20:3663354	20:3647187	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	4	11	0	144	54	high	.	.	low_entropy(5)	CTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|TTGAGACAGTCCCAAGAACAGTTTTCCACAGTGAACCTGAGTGTCATTCCTAGTTCTCTCACTGGCTCTACACTGGCCTCCTCCAGCAACCATCAGCTCATCCCTGGACCTGTAATTAAATCAAGTATTTCCTATGCAAAAGTAAAAGGTTAGATGCTGGAACACGGATGGGAGAAACCGTCAAAGAAAGCTTGTGATCATGCAG___ATAAACATAAGGAGGCAGCAAATCCACAAGGAAGAGCATGAAGCCAACGGCAACAGCTTCTAAGTTGGTCAAGAGCCTGCCG	out-of-frame	MVRCLGPALLLLLLL|vetvprtvfhsepechs*	.
XB47	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	6	6	2	27	132	high	.	.	low_entropy(5),mismappers(1)	CACGCCGCGGGCAGGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGC	.	.	.
XB47	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	9	0	28	33	high	.	.	low_entropy(4),mismappers(1)	AAACTCCCGGGCTCCAGAGATCCTCCTTCCTCAACCTCCCAAAATGCTGGGATTACAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGG	.	.	.
XB47	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	3	2	0	21	23	high	.	.	.	.	.	.	.
XB47	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	6	3	0	622	48	medium	.	.	low_entropy(1),mismappers(1)	TAAAACCAGCCTTAGACTATTTTTCAAACA___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTC	.	.	.
XB47	RP11-460N20.4(2926),RP11-460N20.5(2397)	RP11-479O9.2	./.	+/.	7:65081706	7:65773650	intergenic	exon	deletion	downstream	upstream	5	3	0	24	25	medium	.	.	.	.	.	.	.
XB47	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	5	2	1	136	224	medium	.	.	duplicates(1),low_entropy(2)	GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAG...CCAGTCCTGCAATTGGAGCTTATCTTGGACGAGTATATGGGGACAGCTTGGTGGTGGTCTTAGCTACAGCAATAGCTTTGCTAGATATTTGTTTTATCCTTGTTGCTGTGCCAGAGTCGTTGCCTG	out-of-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
XB47	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	155	224	medium	.	.	low_entropy(1)	TTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTcGGTGGT...TTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTG	in-frame	QLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTsV	.
XB47	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	200	224	low	.	.	low_entropy(1)	ATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTT?CTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGC	out-of-frame	CFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
XB47	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	6	1	0	293	34	medium	.	.	.	GCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhw	.
XB47	XG	TOMM22P2(12810),RPS4Y1(458)	+/+	./+	X:2774739	Y:2841028	splice-site	intergenic	translocation	downstream	upstream	4	2	1	1018	315	medium	.	.	.	CTGAGGTTCTTGCATCCTGAAGCAAACCATGGAGAGCTGGTGGGGACTTCCCTGTCTTGCGTTCCTGTGTTTTCTAATGCACGCCCGAG___GTCAAAGAGACTTTGATTTGGCAGATGCCCTTGATGACCCTG___AACCCACCAAGAAGCCAAACTCAG|GTTTTACGACATGGACAGAGCTGTGCAGCCATCATCACGAGCTAATCCAAAGCAAG___GTCGGCGAAAGATAAGTTTAAGAGTGTAAACTGCGTCCTCCCAGCTCAGCCAACTTGACGGGGGGTAGGCACAACAAAAAGT	out-of-frame	MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNS|gfttwtelcshhheliqskvger*	.
XB47	NAA16	NAA16	+/+	+/+	13:41376064	13:41373450	3'UTR	intron	duplication	downstream	upstream	0	2	5	75	27	medium	.	.	duplicates(1)	GTTTATTCTTACACAGTTTTGTGGTAGCTCCGATCGCTTCTGTATAATTATAATTTCTTACTAAGCTAAGTTGTATACAACCCCACTGTATTATTTTCTTTAGATTCTGATTTCAGGATCTGTGCTTTGATTCCTTGTCTGTTTTATCGTATATTTGCTTGCTTTTTAATTAAAGCACATCAGTTTTAAAGTGTTAACTATATGTTAACAATATGGAGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCCAGACTGGC|GTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCATAAAGGGTTTTCAGTAGGTTTTTTTTTTTTCAAAGGACAGATCAAAAACAAAAAATCCAAATGTTTTTGTTTTTATAGTGTCTAATCATAGTAATCTTCCAGACATTGTGAGCAAAGTTCTATCTCAAGAAATGCAGA	.	.	.
XB47	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	4	1	0	136	34	medium	.	.	low_entropy(1)	GCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGG...CTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCGAGGATTTAGCTAGCTGGTGACGCCGGAGCACGAAGTTGTACAGGTAGCCAGCAGCACCCACGCG	out-of-frame	LTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
XB47	SPNS3	RP13-580F15.2	+/.	-/.	17:4482892	17:4483872	intron	intron	duplication/3'-3'	upstream	downstream	3	2	0	21	23	medium	.	.	.	.	.	.	.
XB47	POLR2B	POLR2B	+/.	+/.	4:57006534	4:57007171	intron	intron	duplication	upstream	downstream	2	0	3	17	19	medium	.	.	.	.	.	.	.
XB47	SYMPK	SYMPK	-/-	-/-	19:45855120	19:45861563	5'UTR	intron	duplication	upstream	downstream	0	2	2	22	11	medium	.	.	.	CTGAAACATAATTATTGAAGCAGGCCTTTTGTGATGTATTGAGTGCCTACTATGTGCCGGACTCTGTGCCTGATATTCCTCAGAGCTGTGTTTTTAAAAGTTTACTCTGGGCCAGGCACTGTGGTTCACGCCTGTAATCCCTGCACTTTGGGAGGCCGAGGCAGGTG|TTTCACCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCTGCCTCCGCCTCCCGAAGTGCTGGGATTACAGGCGTGAGTCACCGCTCCCGGCCCTGTGTATGCTCTTTTTGTAAATGAAAGGGAAATATGTATATATGGGTTTTTTTATTTTCATTTTTTTTCCTTTTTTTGCATAAAATCTAGCTCC...ATGTGTGTTTAAAAAgGAACAAAACAAAACTGAAAGCATAAACCAAAAAGCAGAAGAAGAATGAAACAGGGTAAAATATTTTGGTTGATCTGAATGTATTATCATGAAAAAAGTGGAAATGTTTA	.	.	.
XB47	DCUN1D2	DCUN1D2	-/-	-/-	13:113457133	13:113484868	3'UTR	intron	duplication	upstream	downstream	2	0	1	61	15	medium	.	.	.	TTTATGGTTCTCAATCCCCATGTAGCTTTGCATAGCAACGGCACACGTGGCACGATTCCAGCAGAGTTTATCTCACACCGTTTATATATCACTGGGCCTCTCTTACTTAAATATTATTTGACCTGC...GAGAAGCTTCATAAAGTATGTTTTTTTAAAATATATTTTAATTACATTTAAAAAGACATTTTTCCATGAAAAACATTTATTTTATGAGTGATGAATTATAGATTTTAAAATCAAGGCCGGGCGTGGTGGCTCACACCTGTAATCCCAGCATTTTGGGAGGC|TGACCTCAGGTGATCCGCCTCAGCCTCCCAAAGTGCTGGGATTACATCATCAAGTTACTTTAGATAAGTGGAAACTCAGCCCTCCTATATCTGAAAGTGTCAAGATGTTACTTTGTTTCATTATATACTATATATAGTACAGCTATTTGGCAGTTTTGTTATTTATTGCCTGCCCAGAG	.	.	.
XB47	C5orf56	RAD50	+/+	+/+	5:132449689	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	293	91	medium	.	.	.	CGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGG...GG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAGATTCGTCTGCAATTTCGTGATGTCAATGGAGAACTTATAGCTGTGCAAAGATCTATGGTGTGTACTCAGAAAAGCAAAAAGACAGAATTTAAAACTCTGGA	out-of-frame	VPEFVAYWRKTHQ|dhh*	.
XB47	RP11-896J10.3	TRDC	-/-	+/+	14:36138195	14:22438593	intron	intron	inversion	upstream	upstream	0	0	25	0	432	low	.	.	.	CCAAGAGGGAGAGGGAGAGAGGAAGAGAAAGAGACCAAATAATTCATTTTCTGAGTCAGACTTCTGTTGATAGGAGTCTCAGAACTGTCTACTGTGGTCTCACAAAGCTGAGCCAAg___TTAAGGGCT...|...AAgGGCTTCCAATAAAAATCAAACAATTTATATTTTTACCAACATCTTGCCCACATTGGGAGTGTCAACATTTTGAGCAAAAGCTTTAATTAAATATCCATcCAAAAAATGGTTTGTTAATACTTTACAGTTTTATTACTAGAGGGTTAAAATCCTTTTTCAAGTCTGATAATCAATGATTAACTTTCTTCATTTGTCCTTCACCCATTTGTTTTTTAGGTTGATGGTGTTTTACTTATTGATTTGTGTAATTATAATAATTTTGTGTCTGAG	.	.	.
XB47	LINC01226	LINC01225	+/.	+/.	1:31523619	1:31524543	exon	intron	duplication	upstream	downstream	2	3	10	126	100	low	.	.	.	.	.	.	.
XB47	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	7	1	53	34	low	.	.	duplicates(1),low_entropy(1)	CTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGG	.	.	.
XB47	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606353	intergenic	intron	deletion/read-through	downstream	upstream	2	6	1	27	53	low	.	.	duplicates(1),low_entropy(2),mismappers(2)	.	.	.	.
XB47	FKBP4	RP11-885B4.1	+/-	-/-	12:2796233	12:2771907	exon	exon	deletion/read-through/3'-3'	upstream	downstream	2	7	0	34	16	low	.	.	low_entropy(2)	CTGAGTTCAAGTTTCCGCTGTATG___AAAACGGCAGGACGCTGGAGCGAGAAGGGGAAGTCACATGCCACAGGAGAGCCGCTGGAGCAGACGCTTGAGGTCCCCAATAATCTGGTGCAAAGACAGATGCACTTCTGGACCAG|AATGAAGAAGATACCCAGCAGATGTGTGCCAAGATTCTACAAATGGTACATACAG___GTCG...___GTTGGCACCCAGCATGTGTTTCTGCTCCTTCTCCTGTTTCAGTGCCTGCCTGTGGTGAGCAAAGCCAATAACCACTACAGCACCGATGGCTGCCCTGGCCCCTCTCTCTGCCTGAG___CACTTTGAAtATACTGG	.	.	.
XB47	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	5	1	1	17	8	low	.	.	duplicates(1),mismappers(1)	GAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCG?GAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGtGCTCTACAAGTGGCACTCAAACAGGCGAC	.	.	.
XB47	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	5	0	109	446	low	.	.	duplicates(1)	GGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCC	.	.	.
XB47	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	190	366	low	.	.	.	TGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
XB47	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	43	366	low	.	.	read_through(13)	CCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
XB47	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87036400	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	3	2	0	275	10	low	.	.	low_entropy(1),mismatches(1)	GGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTTTCTATCAACACCACGAGAGAAACACACCCTCCAGCCTGGGTCCCAGAATGAGGCAG___...GAGGCAGAACGGCAGCA...___CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTGGACATTGTGAGGAACATCCAGCTCTGTG	out-of-frame	NQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|gfyqhherntpsslgprmrq	.
XB47	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29505872	exon	5'UTR	deletion/read-through	upstream	downstream	3	2	0	23	21	low	.	.	low_entropy(1),mismatches(1)	AGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTATGATCTCGTGAAACCTTGAGAGAAACTGAATGACGAATGAAACTATTGTTCCTGTTTCACACAGAAGAAAACTGAG___GTTGGCA...GGCCAGCTCACCAAGGAGCTGCAGCAGCATGTAAAGTCAGTGACATGCCCATGCGAGTACCTGAGGAAG___GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCC...CGTGCCTgTAGTcCCAaCTACTcGGaAGGCTGAGGCAGgAGAATtgCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCACCACTG	.	.	.
XB47	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528951	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	19	362	low	.	.	low_entropy(1),mismatches(1)	GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTaTCAaTACtCT...GTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCT	.	.	.
XB47	RP11-764K9.1	LINC01410(5081),RP11-262H14.5(19181)	-/-	./-	9:63811553	9:62818567	exon	intergenic	deletion	upstream	downstream	0	0	4	3	7	low	.	.	.	AGCGACAGAGCCTTGGAGAGGGAGGCTCTGCTCAG___GATTTGTCCCCAGTGCCTTATTTAGTTCACTTGGTGAGGTCATGTTTTCCTGGATGGtGTTGATGCTAGTAGATGTTCTTCAGTGTCTGGACATT...|...ATGaTTATTGCgGCACTATTCACAATAGCAAAGACTGGGAACCAACACAAATGTCCgACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGCAGGGACATGCAGGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAAGACAAAAAACCAAACACCCGCATGTTCTCACTTATAGGTGGGAATTGAACAATGAGAACACGTGGACACAGGAAGG	.	.	.
XB47	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	1	84	5	low	.	.	mismatches(2)	ACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGaTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGACCAATTAACCTGAGCTGCTGAGGACTCTGAGAAGCTTCCC	out-of-frame	PNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|eiksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
XB47	KLRB1	RP11-705C15.2	-/+	+/+	12:9607802	12:9653683	CDS	splice-site	deletion/read-through/3'-3'	downstream	upstream	2	1	1	492	176	low	.	.	.	TAAG___GCCATGCTATCCATCATGTGTTACCTCACATTGGTGTTCCCCGCTTCTTTCACTCAGAATGCTAACTCTTCAGAGACACAGGAAAGTGCCAGTTTCAACAAATG___GAAGATCTAATTCTGGAAGACATACAAATGCCGAAAGGAAAATTAAAGCCACTTACCCCGAGGAAGAGATGAAGGTGAAGAACTTTCTGGGCCTGAGTCTGTGG|ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAG___AATTTCCTGAAA	.	.	.
XB47	KLRB1	RP11-705C15.5	-/+	+/+	12:9607802	12:9653683	CDS	splice-site	deletion/read-through/3'-3'	downstream	upstream	2	1	1	492	176	low	.	.	.	TAAG___GCCATGCTATCCATCATGTGTTACCTCACATTGGTGTTCCCCGCTTCTTTCACTCAGAATGCTAACTCTTCAGAGACACAGGAAAGTGCCAGTTTCAACAAATG___GAAGATCTAATTCTGGAAGACATACAAATGCCGAAAGGAAAATTAAAGCCACTTACCCCGAGGAAGAGATGAAGGTGAAGAACTTTCTGGGCCTGAGTCTGTGG|ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAG___AATTTCCTGAAA	.	.	.
XB47	AC011893.3	MCM6	+/+	-/+	2:135820639	2:135846146	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	3	1	0	826	53	low	.	.	duplicates(1)	GTTTTCTTTTGTGAAGCCACAGCCAGTCCTTCTTGGCTGACTCtAAGTGTGGTCAGGAAGCAGTGGTAACCCATGTCTGTCTATTGCAAGTCTACACTGCCACACAAAGCCTGAGGTACAGCTGC...ATAGAAGGAGGATATGGCTCAGGACAGTCAAGTACTGGAAGAGGAAAGGTACAAAGAGGTGTTGGCACTGAATGACCCTGAACAGGGCTGCACTGGAAATATCAGAG|AACAACACGAAGTTTGGCAATCACAAGTGGCCTATGTGAACAGAGCTTACAGAAGTGACCGAGCATGTAAGCAGTACCAG___ATGAAGTCTCAC	.	.	.
XB47	CLN5	MYCBP2-AS1	+/+	+/+	13:76996127	13:77075518	splice-site	exon	deletion/read-through	downstream	upstream	0	2	1	90	5	low	.	.	.	GTATGGGAATTTAAATATGGAGACCTCCTGGGACACTTG___AAAATTATGCATGATGCCATTGGATTCAGAAGTACATTAACTGGCAAGAACTACACAATGGAATG...TGGGACATTAGTTCAAGTAGCAACTATATCAG|ATCTAACTCCAGTCCAATATCCCCTAAGAAGCCTTCTCTGACCACTCCAGGGCACAATGATCTCAAG___GTTCAGCATCTCCAGAGATGAGCTTTCCAAATACCTGATGAAGATATGCATGTGAGAAGGAATTAATGACAGGCATTAACACTATATTGGCCAGAGGACTCATTAGCTGATTCCGCAGGTTTTATAATATGCTACTCTTGCTAATATACACCACTATTTTTCTTAATTACA	out-of-frame	GTLVQVATIS|dltpvqyplrsll*	.
XB47	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	86	12	low	.	.	mismatches(1)	GCTGAGCGTGATGACTTCATCCTGGGG___ATTCTCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGACATGACCCGCATaCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAG	out-of-frame	AERDDFILGILNCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLLEAGDGGPAVAVGHDPHtEHAHRVPLPAYHPQHE|vtqealtwspqnsinssrcs*	.
XB47	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	1	0	41	13	low	.	.	low_entropy(1),mismappers(2)	AG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCA	out-of-frame	GYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
XB47	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	1	0	10	99	low	.	.	low_entropy(1)	CTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAG	.	.	.
XB47	EPG5	RP11-618K16.4(12219),SIGLEC15(24626)	-/-	./-	18:45855571	18:45800886	exon	intergenic	deletion/read-through	upstream	downstream	0	0	2	52	2	low	.	.	.	CCGGAAGTCGCCTTTGTCTAACAG___GTTCCGAGTGGTTGCCCGAAGCATGGCTGCCTTCCTTTCAGTTCAGGTTCCTATGGAAGATCAGATCCGTTTGAGGCCTGGCTCTGAATTACATCTGACCCCCAAAGCTCAGCAGGT...|...CAAGACGCTCACCTTTTAAGAGGCTTGCCCTAACTGGAGTGCTGGAGTCTGAACTTTCTTTGAACATCGTTTGATCTCAGATGCAGCCAGTCCTGTGCACAGCCTGATGGGATGGAATGTTCAGGATCATCATGTGATTCCCCT	.	.	.
XB47	POC1B	DUSP6	-/-	-/-	12:89459636	12:89351025	intron	CDS	deletion/read-through	upstream	downstream	0	0	2	36	223	low	.	.	mismappers(1)	CCATGAGGAAAAAGTTGAGACTGTAGAA___ATTAATCCAAAGCTTGAGGTAATCGATTTGCAGATCTCTACTCCCCCTGTTATGGATATCCTTTCTTTTGATTCTACCACAGT...|...GTGGCTTCAGTAAGTTCCAAGCCGAGTTCTCCCTGCATTGCGAGACCAATCTAGACGGCTCGTGTAGCAGCAGCTCGCCGCCGTTGCCAGTGCTGG	.	.	.
XB47	LINS	CERS3	-/-	-/-	15:100564692	15:100545019	splice-site	5'UTR	deletion/read-through	upstream	downstream	1	0	1	12	1	low	.	.	.	CTAACTCGAGT___ACATGGAGATTAAGTAGCTTGCCCAAGATCACCCAGCCAGTAAAGTGGCAGAGCTGAAGTAATGGATTCAG___ACACCCACTAACAACAAtAAAGAGGCCAAATCACAAGCAACAAGACACATGCGGACAAAATGGAAAAGGAGAAAACAATTTTGGAAGCTCAAAG|CCTGTAGACCCTTCGTGTTTTCACCTTCTGAAGAGGTTGTGTAAGGCGCTGGGTTCGGAATCACGGAAGGCCCA	.	.	.
SJTALL030263	TCF7	SPI1	+/+	-/-	5:134138164	11:47360040	splice-site	splice-site	translocation	downstream	downstream	35	49	6	985	317	high	.	.	duplicates(36),mismatches(12)	CCACCGCCCCTCACTCCCCTCCGGTTCTCCCTCCAGGCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCA	in-frame	pppltplrfslqALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQ|dHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGER	.
SJTALL030263	TCF7	SPI1	+/+	-/-	5:134138237	11:47360040	splice-site	splice-site	translocation	downstream	downstream	2	2	8	197	317	high	.	.	duplicates(8),mismatches(1)	CCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAGGTACAAGCCTGGGATGGGGAGGGGCCCAGTGAAACCAGAGCCTAAGGGCCAAGACCCCAGCTTCTGAGACCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCC	out-of-frame	PQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQgtslgwggaq*nqslraktpasetr|pllglppppraqrvrelrreqlhgaperaapaaaaalpphgagadarpryphgatpsqswppgllpapdvppvpipvps	.
SJTALL030263	SPI1	TCF7	-/-	+/+	11:47375633	5:134138951	splice-site	splice-site	translocation	upstream	upstream	3	2	2	63	728	high	.	.	duplicates(5)	TGACCGACTCGGAGCCCGGCTGGATGTTACAGGCGTGCAAAATGGAAGGGTTTCCCCTCGTCCCCCCT___CCATCAGAAGACCTGGTGCCCTATGACACGGATCTATACCAACGCCAAACGCACGAGTATTACCCCTATCTCAGCAGTGATGGGGAGAGCCATAGCG|TTCACAGGCCTCTGCAGACCCCTGACCTCTCTGGCTTCTACTCCCTGACCTCAGGCAGCATGGGGCAGCTCCCCCACACTGTGAGCTG___GTTCACCCACCCATCCTTGATGCTAGGTTCTGGTGTACCTGGTCACCCAGCAGCCATCCCCCACCCGGCCATTGTGCCCCCCTCAGGGAAGCAGGAGCTGCAGCCCTTCGACCGCAACCT___GAAGACACAAGCAGAGTCCAAGGCAGAGAAGGAGGCCAAGAAGCCAACCATCAAGAAGCCCC	in-frame	MLQACKMEGFPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHS|vHRPLQTPDLSGFYSLTSGSMGQLPHTVSWFTHPSLMLGSGVPGHPAAIPHPAIVPPSGKQELQPFDRNLKTQAESKAEKEAKKPTIKKP	.
SJTALL030263	TCF7	SPI1	+/+	-/-	5:134116086	11:47360040	splice-site	splice-site	translocation	downstream	downstream	1	0	3	635	317	medium	.	.	mismatches(1)	AGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTGGTAAGTGGACCCCGCAGCCAGTGCCGCCCTGTGCTTGCAGCCTCCTTGACCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTG	out-of-frame	MYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLVSGPRSQCRPVLAASLTr|pllglppppraqrvrelrreqlhgaperaapaaaaalpphgagadarpryphgatpsqswppgllpapdvppvpip	.
SJTALL030263	TCF7	SPI1	+/+	-/-	5:134116033	11:47360040	splice-site	splice-site	translocation	downstream	downstream	1	0	3	1437	317	medium	.	.	mismatches(1)	CTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGC?CCCCCAGCCGCAGCCCCCGCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTG	out-of-frame	LPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQ?PQPQPPL|titgtstpttctassrasprttsrssracsprscssstatwswsrctssippwchpipvlatrsptcpgcassthp	.
SJTALL030263	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	28	19	1	892	206	high	.	.	duplicates(32),low_entropy(1),mismappers(2),mismatches(1)	CGTGTGTGGTGCGGGCCTCACTTCCAGGTGGAAGCAATAAAAGTAGGTCTGCCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAG?CA	.	.	.
SJTALL030263	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	21	13	1	234	446	high	.	.	duplicates(10),low_entropy(1),mismatches(6)	GACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...?TCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACC...___GCCG	.	.	.
SJTALL030263	BACH1	AF124730.4	+/-	-/-	21:29230049	21:29182230	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	8	20	0	234	113	high	.	.	duplicates(10),low_entropy(2),mismappers(1)	GCCTTGTGAAGGAGGTGCTTGCTTCTCCTTTACCTTCTGCCATGATTATAAGTTTCCTGAGGCCTCCCCAGCTATGTGGAACT|GACTCAGACCTGGGAGAACAGCCACTGCCCAGACACGTTCAGCGACAGATAAAACAGTATAACATTTTGCAAAGGCAAATTCCTCCTCTTCTGCTGTAGAAAAACTTGGTTTCTTCTTCATACACACTGAGTCCTTCTGCTCATAATGCTGGTCCTAAACACCTTAATCCAAAAGCAGCCAATAAAAAGTTTTTAAAAGTCC	.	.	.
SJTALL030263	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	9	12	4	86	47	high	.	.	duplicates(9),low_entropy(8),mismappers(1)	GCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGAC	out-of-frame	WFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
SJTALL030263	WDR37	GTPBP4	+/+	+/+	10:1096246	10:995929	splice-site	splice-site	duplication	downstream	upstream	7	1	5	187	623	high	.	.	duplicates(3)	AGCTCGTGAAGGAGTACATCGGCCACCGGGACGGCATCTGGGATGTCAGCGTGGCCAAGACACAGCCAGTGGTGCTCGGGACTGCATCAGCCG___ATCACACGGCTTTGCTGTGGAGCATAGAGACAGGGAAGTGCCTAGTCAAGTACGCAGGCCACGTGGGCTCAG___TAAATTCTATCAAATTTCATCCCTCAGAGCAGTTGGCTCTCACTG___CTTCTGGAGATCAGACTGCTCATATCTGGAGATACGCGGTGCAGCTGCCGACACCCCAGCCTGTTGCTGACACTAGT|GATATTCATCCGTTCTATGCTGATTTGATGAATATTCTCTACGACAAGGATCATTACAAGTTGGCTCTGGGGCAAATAAATATTGCCAAAAATTTAGTGGACAA___TGTTGCTAAAGATTATGTGCGACTGATGAAGTATGGCGACTCTCTCTACCGCTGCAAACAGCTGAAGCGTGCGGCCCTG	in-frame	LVKEYIGHRDGIWDVSVAKTQPVVLGTASADHTALLWSIETGKCLVKYAGHVGSVNSIKFHPSEQLALTASGDQTAHIWRYAVQLPTPQPVADTS|DIHPFYADLMNILYDKDHYKLALGQINIAKNLVDNVAKDYVRLMKYGDSLYRCKQLKRAA	.
SJTALL030263	GTPBP4	WDR37	+/+	+/+	10:1017207	10:1080011	CDS	splice-site	deletion/read-through	downstream	upstream	4	3	0	630	475	low	.	.	duplicates(9),low_entropy(2),mismatches(1)	CTGTGGCCCGGAGTGGGAGTTGCTCTCGAACTCCACGTGACGTTTCTGGTCTTAGGGATGTCAAG___ATGGTGAAGAAAGCCAAGACTATGATGAAGAATGCTCAGAAGAAGATGAATCGGTTGGGGAAGAAAGGGGAGGCGGATAGACACGTGTTTGATATGAAGCCCAAGCACTTGCTGTCTGGGAAGAGGAAAGCTG|TACGTAGAGAAATCGACACTCTTAATGAACGTTTAGCTGCTGAAGGACAAGCGATTGATGGAGCAGAGCTGAGTAAGGGCCAACTCAAAACAAAAG___CCAGTCACAGCACCAGCCAGCTCTCCCAGAAACTGAAGACCACTTACAAGGCTTCCACCAGCAAG___ATTGTCTCCAGCTTTAAGACCACG	in-frame	VARSGSCSRTPRDVSGLRDVKMVKKAKTMMKNAQKKMNRLGKKGEADRHVFDMKPKHLLSGKRKA|vRREIDTLNERLAAEGQAIDGAELSKGQLKTKASHSTSQLSQKLKTTYKASTSKIVSSFKT	.
SJTALL030263	GTPBP4	WDR37	+/+	+/+	10:1007128	10:1080011	splice-site	splice-site	deletion/read-through	downstream	upstream	0	4	0	710	475	low	.	.	duplicates(2),low_entropy(1),mismatches(5)	GCTGAACTTTCTGAAGATGATCAG___AAAATATTTACAGATTTGCAGTCTGAAGGATTCCCTGTAATAGAGACCAGCACCCTGACTGAGGAAGGTGTTATTAAAGTTAAAACAGAG___GCTTGCGATAGGCTTTTGGCTCATCGAGTGGAAACCAAAATGAAGGGAAATAAAGTGAATGAGGTGCTGAATAGACTGCACCTGGCTATCCCAACCAGGAGGGACGATAAG|TACGTAGAGAAATCGACACTCTTAATGAACGTTTAGCTGCTGAAGGACAAGCGATTGATGGAGCAGAGCTGAGTAAGGGCCAACTCAAAACAAAAG___CCAGTCACAGCACCAGCCAGCTCTCCCAGAAACTGAAGACCACTTACAAGGCTTCCACCAGCAAG___ATTGTCTCCAGCTTTAAGACCACGACATCGAGAGCTGCCTGCCAGCTCGTGAAGGAGTACATCGGCCACCGGGACGGCATCTGGGATGTCAGCGTGGCCAAGACACAGCCAGTGGTGCTCGGGACTGCATCAGCC	out-of-frame	AELSEDDQKIFTDLQSEGFPVIETSTLTEEGVIKVKTEACDRLLAHRVETKMKGNKVNEVLNRLHLAIPTRRDDK|yvekstllmnv*	.
SJTALL030263	GTPBP4	WDR37	+/+	+/+	10:1009580	10:1080011	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	590	475	low	.	.	duplicates(1),low_entropy(1)	GGCTTTTGGCTCATCGAGTGGAAACCAAAATGAAGGGAAATAAAGTGAATGAGGTGCTGAATAGACTGCACCTGGCTATCCCAACCAGGAGGGACGATAAG___GAGAGGCCCCCTTTCATCCCTGAAGGAGTGGTGGCTCGCAGGAAGAGGATGGAAACTGAGGAGTCCAGGAAGAAGAGG___GAACGAGATCTTGAGCTGGAAATGGGAGATGATTATATTTTGGATCTTCAGA|TACGTAGAGAAATCGACACTCTTAATGAACGTTTAGCTGCTGAAGGACAAGCGATTGATGGAGCAGAGCTGAGTAAGGGCCAACTCAAAACAAAAG___CCAGTCACAGCACCAGCCAGCTCTCCCAGAAACTGAAGACCACTTACAAGGCTTCCACCAGCAAG___ATTGTCTCCAGCTTTAAGACCACGACATCGAGAGCTGCCTGCCAGCTCGTGAAGGAGTACATCGGCCACCGGG	in-frame	LLAHRVETKMKGNKVNEVLNRLHLAIPTRRDDKERPPFIPEGVVARRKRMETEESRKKRERDLELEMGDDYILDLQ|iRREIDTLNERLAAEGQAIDGAELSKGQLKTKASHSTSQLSQKLKTTYKASTSKIVSSFKTTTSRAACQLVKEYIGHR	.
SJTALL030263	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482895	17:4483875	intron	intron	duplication	upstream	downstream	2	4	6	47	62	high	.	.	duplicates(3)	.	.	.	.
SJTALL030263	RP11-15B24.5	RPS6P12(178815),RASEF(55978)	+/+	./+	9:82496858	9:82923607	splice-site	intergenic	deletion	downstream	upstream	5	3	2	300	15	high	.	.	duplicates(1),mismappers(2)	ATTGAAGAGTGGCAACCAGAACCTCTTGTTCCTCCTGTCCCAAAAGACCATCCTGCTCTCAACTACAACATCGTTTCAGG___TTCCTCTGGCAGCCCTCCTCAAGGACCTCTGTGAGACAAAGTCAGAAATGACTTCACTGGAGACCAAGAGAGCCCACAGAGCTCTTCCTGCTGCTTCTTCTACCCTTGTACTCACTCGGCTCTCTAAATTTGTCTCAGCTCCAG|GACATTAACAATCTACCTCACGCTGTGTCTCCGAAGCCCCGCGGAGCTGCTGAAAACCACTAGCTATCAAATGAACCCTCAGTTCCGCCTCAGTAACTTTAAGTTCAAGTTTATCACTGAAGCGTCACTCATGTGAGAAGAAGATACAAGCCTCTGAGG	.	.	.
SJTALL030263	SLC25A24P1(837),NBPF6(37109)	SLC25A24P1	./+	+/+	1:108338690	1:108331171	intergenic	splice-site	duplication	downstream	upstream	4	5	1	84	97	high	.	.	duplicates(5),low_entropy(1)	GATACTTTTGAGGAATATTTTAGTCAGGCCCATCCCAGTTAAGGTGGGAAGAGTTGGGAACCTTGCATACAAGGGGAGAGGAGCTGAGAACTAAAGTAGGAGAGTGGAAAGAACTGTGAAACTTGAGCTAAATTAAGCCACAGATCAACAGAAGAGAGAAAG|TATAAGAAATTGCTTAGTTTTGATGGTGTTCATTTAGGAATTCTTGAAAGATTTATATTTGGCTCATTGGCTGGTGTAACTGCCCAGACCTGTATTTACCCCATGGAG___GTACTAAAGACCAGACTGGCTATAGGTAAAACTGGAGAGTATTCAG...ACTCCTAACTTGCTAGGCATTGTACCTTATGCCGGCATAGATCTTGCTGTTTATGAG___ATTTTGAAGAATTTTTGGCTAGAAAATTATGCAGGAAACTCTGTGAATCCTGGGATAATGATTTTGGT	.	.	.
SJTALL030263	RP11-460N20.5	RP11-479O9.3	+/+	+/+	7:65091952	7:65768141	splice-site	splice-site	deletion	downstream	upstream	5	2	0	35	44	high	.	.	duplicates(9),low_entropy(4),mismappers(1)	ATACG___TTTCGCTTTTGTTGTTCTGGCTGGAGTGCAATGGCGCAATCTCGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAACCTCCAGAGTAGCTAGGACTACAGGTGTGCACCACCACGCGCAG___ACATGAACTTGTGAATTCAACAAGTGAAGATTTACAACTTGATAAACCAGCTGCAGGAG___TAAAGGAAGAATGGTATGCCAGAATCACTAAATGAAGAAAGATGGTGGATCAGCTTTTCTGCAAAAAAATTTG|GAAATGGACAGGCTACTAGCATGGTCCCACTGCCAGGTGGGAGATTCCTGATGGGAACAAATTCTCCAGATGaCAGAGATGGTGAAGGCCCTGTGTGGG...AGAGACCAAAGACCAACgAACTACCACAGCCACCAGTTCCGG	.	.	.
SJTALL030263	RP11-460N20.5	RP11-479O9.3	+/+	+/+	7:65098832	7:65768141	splice-site	splice-site	deletion	downstream	upstream	1	1	0	14	44	medium	.	.	duplicates(2)	CTACCAGAAAACATTCCTTTCAGAAGTCCCTCGTGGTATGGAATCGCAAGGCTGGAAAACATCATTCAAGTGGGCAATCGAATTAAATTTCTTATTAAAAG|GAAATGGACAGGCTACTAGCATGG...GAGTCTTGCTCTGTCACCCAGGCTGGCAGTGGCAcGGCCTCGGCTCACTGaAACGTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAACCTCC	.	.	.
SJTALL030263	CDH12P3(63905),RP11-1415C14.4(377)	GUSBP3	./-	-/-	5:70196878	5:69642289	intergenic	splice-site	deletion	upstream	downstream	2	4	0	74	259	high	.	.	.	CCAAGGATGAAGGAAAcACTGGACCTCATTATGGATTTACTTTTGGGATACACTCATcATTCCAGAGGAGGGTAAAAGGCTGAGAAGCTTAAG|GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGC	.	.	.
SJTALL030263	CCDC7	CCDC7	+/+	+/+	10:32848718	10:32447108	splice-site	intron	duplication	downstream	upstream	0	1	5	14	9	high	.	.	duplicates(1)	AAAAGTGATCAATTTATCACCCTTTGAAAATAAAG|TAAAATTTCTCTACAGTGCTTATATTCAATTCATTGTTCCTACTTCCTCTCTTTTGAACG___GGAGGAATAAGTTTTTTTCATCTGTAATTTGGAAGCCAAGTCAGTAACAAAATGAAACCAG	out-of-frame	KVINLSPFENK|vkflysayiqfivptssllngrnkffssviwkpsq*	.
SJTALL030263	CCDC7	CCDC7	+/+	+/+	10:32567891	10:32565558	splice-site	splice-site	duplication	downstream	upstream	0	1	0	175	206	low	.	.	.	AAAGAAACAAGAAAATCACTGGTTTCAGATTCAGGTGGACAAAGGACAAGTGATAAAATCCAAGAATATCCACAG|AAAGTAGCACGTCTGGAAATTGAGAACAAAGTCCTTCAGGAGCAATTGAAACAGGCTTTACAG___GAAGCTGAAAAAGCTAAGCATCAACTTAACTATTTCCTAAATCAAGAGAAGTTACTTAAAAGTGAGGGGAAAACTGAGACAACAATGCAAGT	in-frame	KETRKSLVSDSGGQRTSDKIQEYPQ|KVARLEIENKVLQEQLKQALQEAEKAKHQLNYFLNQEKLLKSEGKTETTMQ	.
SJTALL030263	PTBP3	UBE2V1P10(171881),STK33P1(160748)	-/-	./-	9:112333470	9:85331831	splice-site	intergenic	deletion	upstream	downstream	4	2	0	461	389	high	.	.	duplicates(1)	CGGACCGGCCGGGGCTCCGCAGAGCCAAAGCTCGCTTGTCCCCGGAACCGCCCTGCTGCCGCCGCCTGCTTCCTCTGCTCGCGGTTAGCCCGTCAGTCCCTGCTCTGTGCGCGCCTCCATCTGGGCCATGGATGG|AGCACTGGAATCACCCATGAGTCCAAGACGGAAGGCTGATGAAGAGAAGGAACAGGGAGAGGGAATTAACTTTCCTGAGCTCAGTAAGTGCTTTGATCACATGACTTTAAAAACTGCTTCTTGCATCATGGCACTCTACTGTGGTATTATCTCTAATTCTCATGGACCCTAAACAATAGAC...GAAAAACTGTGACAAAG___GTACTAGAACCTAGGCTGAGTGCTTTGCCTATATGATACAATGTAATCTTCAGAGTAACATTGTGAAGGTGGCAGTCTCGGATCATTTTCAAATGAGGAAATCGAAGC	out-of-frame	MDg|alespmsprrkadeekeqgeginfpelskcfdhmtlktascimalycgiisnshgp*	.
SJTALL030263	UBE2V1P10(187305),STK33P1(145324)	PTBP3	./-	-/-	9:85347255	9:112330474	intergenic	splice-site	duplication	upstream	downstream	1	0	0	147	108	low	.	.	duplicates(2)	GGAAGATGAGGGGCCACATGGAGAGTGAGGCCTCAGAGAGGAGTGCGGAGGTTCTGGACATGTGAATGAAGGTGCCACCTTGGACGTTCCAGACCCGTCGAGGCTCCAAGGACACCAGACCCATCCATCGTGTGATAAGAGCCAACAAGAGCCCCCAG|TGTTGTTACAGATCTTATAACAGTCG	.	.	.
SJTALL030263	WRN	TEX15	+/+	-/-	8:31125000	8:30887311	splice-site	splice-site	inversion	downstream	downstream	1	2	2	96	32	high	.	.	duplicates(4)	CACCTTCTTACTGAGATACGTAATGAGAAGTTTCGATTATACAAATTAAAGATGATGGCAAAGATGGAAAAATATCTTCATTCTAGCAGATGTAGGAGACA___AATCATCTTGTCTCATTTTGAGGACAAACAAGTACAAAAAGCCTCCTTGGGAATTATGGGAACTGAAAAATGCTGTGATAATTGCAGGTCCAG|GCCAACAAAATGGAAATGAAAGAAACTGCTAAACAGGATACACTGTGGCAAATGAGCTCAACTAGCAAACCCGTGTTGAATACTCGTGAAGTCAATCCTTTGAAGAAATTCACCATTCCTAAGATCAGGAGGACAGCTGAGAAAG___TTTACTTGTCACCTTGTTACACCAATAGTAGAGAGTATAGTTTTATACATGATACTCTTAACCAGTGCAGG	out-of-frame	HLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSr|ptkwk*	.
SJTALL030263	TEX15	WRN	-/-	+/+	8:30858668	8:31064289	splice-site	splice-site	inversion	upstream	upstream	1	0	0	15	177	low	.	.	.	CAAGAAATGCACCTTCTTTGAAAGATACCATTGAACTGCAAGCCTACAGTTCAGCA___GTGTACTTCTATGAATACAGTGTCCTTTCAAAGCCTGTAGATAAACCTAGGCAATGTCTTCCATATGCTG...ATAATGGACGCCTTATGACATCTTTGAGATTCCTCTCAACAGGATTTCCTAAGAGAGCTG|CATGAGTCTATCAGATGGGGATGTGGTGGGATTTGACATGGAGTGGCCACCATTATACAATAGAGG	.	.	.
SJTALL030263	WRN	TEX15	+/+	-/-	8:31064434	8:30860057	splice-site	splice-site	inversion	downstream	downstream	0	1	0	149	34	low	.	.	.	GCCACCATTATACAATAGAGGGAAACTTGGCAAAGTTGCACTAATTCAGTTGTGTGTTTtTGAGAGCAAATGTTACTTGTTCCACGTTTCTTCCATGTCAG|GTTCTCTTTGGAAAAGTGAAGAA...AACTTTGATTGCCATATGTCAAGAAATGCACCTTCTTTGAAAGATACCATTGAACTGCAAGCCTACAGTTCAGCA___GTGTACTTCTATGAATACAGTGTCCTTTCAAAGCCTGTAGATAAACCTAGG	out-of-frame	PPLYNRGKLGKVALIQLCVfESKCYLFHVSSMS|gslwkse	.
SJTALL030263	LRSAM1	FGD3	+/+	+/+	9:127485835	9:92975238	splice-site	splice-site	duplication	downstream	upstream	2	2	0	54	306	high	.	.	duplicates(1)	GTTGATGTCCATAACCCAGGAGGAGACTGAGAGCCTGCGGCGACGTGACGTTGCCT___CCGCCATGCAGCAGATGCTGACTGAGAGCTGTAAGAACCGGCTCATCCAGATGGCCTACGAATCTCAGAGGCAGAACTTGGTCCAGCAGGCCTGTTCCAG|TACCTCCTAAATGGCTCTACTTTGAACCTGCTGGGCAAGGAAGAGATTTTCAAGGAAACCATCTACCGTGTGCAAGCTCCTGCCGGCCAACCCCAGACCCCAGCACGGAGCCAGGCGCCTGTGCCCGCCGACCCTCAGCATCCTCCTCAGAAAGGCTGGT	out-of-frame	LMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSs|ts*	.
SJTALL030263	SECISBP2	SLC25A6P5(6148),RP11-6F6.1(203781)	+/+	./+	9:89334730	9:105857573	splice-site	intergenic	deletion	downstream	upstream	3	1	0	551	22	high	.	.	duplicates(5)	CAGACATTATCTACAGAACTGTCAGCAGCCCCTAAAAATGTTACTTCTATGATAAACTTAAAGACCATTGCTTCATCAGCAGATCCTAAAAATGTTAGTATACCATCTTCTGAAGCTTTATCTTCGGATCCTTCCTACAACAAAGAAAAACACATTATTCATCCTACCCAAAAG|CTCAGAGTCCACATTTAACAATTGCCCCCATCCTGCACATCCTGCACCAAGATTCTAGCATGCCTTACATCTGAGCACATCTGAACT___aTTGGCTTATTGGAATGTTTCTCAGAGAATGTCGAGGAG	out-of-frame	QTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHPTQK|lrvhi*	.
SJTALL030263	DAPK1	IKBKAP	+/+	-/+	9:87668674	9:108877763	splice-site	intron	deletion/5'-5'	downstream	upstream	2	0	2	453	20	high	.	.	duplicates(3)	TATCAAGACAGGCACGGCAATACTCCCCTCCATGTGGCATGTAAAGATGGCAACATGCCTATCGTGGTGGCCCTCTGTGAAGCAAACTGCAATTTGGACATCTCCAACAAG___TATGGGCGAACGCCTCTGCACCTTGCGGCCAACAACGGAATCCTAGACGTGGTC...GCGTTGAGGCGCTGACCACG___GACGGAAAGACGGCAGAAGATCTTGCTAGATCGGAACAGCACGAGCACGTAGCAGGTCTCCTTGCAAGACTTCGAAAG|CTACTTCATCCAGAAAGGAAAATGACAGTCCATTTAACCTATGCCAAG...ATGAAAATGATGAAAAAAATGCACACCGTCTCTGAGAAAACTTACCGGGGTAGCTGAATTCTGCTG___CACCCAACATCCtGAGGATTTACAAGATTCTTACCAGCCTCAAAGCTTCTTCCCAGGCAG	out-of-frame	VEALTTDGKTAEDLARSEQHEHVAGLLARLRK|llhperkmtvhltya	.
SJTALL030263	RASA1	CTC-242N15.1(3801),RASA1(23942)	+/+	./+	5:87341321	5:87243946	splice-site	intergenic	duplication	downstream	upstream	0	1	3	188	265	high	.	.	duplicates(4)	GGAAGAAGATCCACATGAAGGAAAAAT|TCATCCAGGGACCAGGACTAAAGGAGACTGCTGACTTGCATACACATCTTCCAAGAACACACTGGGCATCAACATCCAACAAGCGAAAAAAGGAAGGAGCATGTAGGATGCCATGGACCTGGTCTAAAAATGAC	out-of-frame	EEDPHEGKi|hpgtrtkgdc*	.
SJTALL030263	NOTCH1	IPPK	-/-	-/-	9:136505310	9:92619565	splice-site	splice-site	deletion	upstream	downstream	2	1	0	295	95	high	.	.	duplicates(4)	CTTCAATGACCCCTGGAAGAACTGCACGCAGTCTCTGCAGTGCTGGAAGTACTTCAGTGACGGCCACTGTGACAGCCAGTGCAACTCAGCCGGCTGCCTCTTCGACGGCTTTGACTGCCAGCGTGCGGAAGGCCAGTGCAA|GTGCAGCAGTACCGCGTCGCCATGACTGCCAAGGACTGCTCCAT...GTCTCCCTGTCTGCAGGATGCCAG___CTCTGATCAAAGGCCTGTCGTCCCTTCATCGAGGTCCAGGTTTGCCTTTTCCGTGTCTGTGCTGGACCTTGACCTCAAGCCCTACGAGAGCATTCCCCAT	out-of-frame	FNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEGQCk|csstasp*	.
SJTALL030263	AC012501.2	GALNT13	-/+	+/+	2:153510977	2:153732769	intron	5'UTR	deletion/read-through/3'-3'	downstream	upstream	8	24	0	127	125	medium	.	.	duplicates(13),low_entropy(3),mismappers(2),mismatches(1)	GACTGTGGTTGGCGAGGTAGGAAGCAGACAGGAGAGCtGTGGTGTAGGTTTCAACTGAAGAAAATGTTTCTAGAAGGAAAGAGTTACCCAGCAAATACAAGCAGAAGGAGAGAGTGGGCCACTCTGTGGTATCTCGCAATGGAGCAGACACTGTTGGACAAGAGCAGATTCACTGGAGAG|GTAACAAGTTGGAAGACTTTGGATCTCAAGAAAAGTGGATTTTGCCTCTACCGTAGAGATAG___ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGTGCCACATACA___TGGAATGTATCCTGCTTTCATCTTGGAGTTCACCTGTGTGGCTTGGATTTATCACAGTAGCATTTGTCTTCAATCTGTGTGTTAACTAGAAATCAAGGAAAGACATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAGCCACTTCGCTGATGTGGG	.	.	.
SJTALL030263	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	0	17	1	112	42	medium	.	.	duplicates(8),low_entropy(1),mismappers(2),mismatches(1)	CCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___...GTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCT	.	.	.
SJTALL030263	ARL17B	KANSL1	-/-	-/-	17:46352820	17:46094701	splice-site	splice-site	deletion/read-through	upstream	downstream	6	7	0	291	491	medium	.	.	duplicates(7),low_entropy(5),mismappers(2)	AGGTTTCTGTGTGGAGACAGTAGAATATAAAAATAACACCTTCGCTGTCTGGGATGT...AG___GTTTCTGTGTGGAGACAGTAGAATATAAAAATAACACCTTCGCTGTCTGGGATGTTGGCAGCCACTTCAAAATCAGACCTCTGTGGCAGCATTTTTTCCAGAACACAAAAG|GAGACGCAGGTCAGAATGGAAATGGGCTGCAGACCGGGCAGCTATTGTCAGCCGCTGGAACTGGCTTCAGGCTCATGTTTCTGACTTGGAATATCGAATTCGTCAGCAAACAGACATTTACAAACAGATACGTGCTAATAAGGT	out-of-frame	GFCVETVEYKNNTFAVWDVGSHFKIRPLWQHFFQNTK|gdagqngnglqtgqllsaagtgfrlmfltwniefvskqtftnryvlir	.
SJTALL030263	ARL17B	KANSL1	-/-	-/-	17:46352820	17:46172232	splice-site	splice-site	deletion/read-through	upstream	downstream	5	0	0	291	489	low	.	.	duplicates(1),low_entropy(1)	AGGTTTCTGTGTGGAGACAGTAGAATATAAAAATAACACCTTCGCTGTCTGGGATGTTGGCAGCCACTTCAAAATCAGACCTCTGTGGCAGCATTTTTTCCAGAACACAAAAG|TCTGTTCTCTGGGGAGGCAGTAAGGGGCCGTGGAGCTGGCCTCGGCCTCGGCATCGGGAGAGGCTGGACTTCCTGTCTCTCTGTGCTGAATGGCTGCGATGGCG...GCTTTGAAAATTCTGCAGTACGTTGTGTTTGATATGATGTCACTAAACAATGATATTTCATCACTGTGGAAG___GAGACGCAGGTCAGAATGGAAATGGGCTGCAGACCGGGCAGCTATTGTCAGC	out-of-frame	GFCVETVEYKNNTFAVWDVGSHFKIRPLWQHFFQNTK|vcslgrq*	.
SJTALL030263	RP11-460N20.4	RP11-479O9.2	+/+	+/+	7:65078780	7:65773650	exon	exon	deletion	downstream	upstream	7	5	0	64	65	medium	.	.	duplicates(16)	GGCTACTAGCATGGTCCCACTGCCAGGTGGGAGATTCCTGATGGGAACAAATTCTCCAGATGACAGAGATGGTGAAGGCCCTGTGTGGGAGGCAACAGTGAAACCCTATGCTATCGACATATTTCCTGTCACCAACAAAGATTTCAG|AGACCAAAGACCAACgAACTACCACAGCCACCAGTTCCGGAACCTGCCAATGATGGGCAAtGGAAAGTGAGGGAGTTCAACTCTG	.	.	.
SJTALL030263	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	6	5	0	157	385	medium	.	.	duplicates(7)	CGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
SJTALL030263	SERF1B	SMN2	+/+	+/+	5:70026515	5:70065965	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	157	242	low	.	.	duplicates(3)	GAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGG	out-of-frame	ELARQKNMKKTQEISKGKRKEDSLTASQRKQs|ml*	.
SJTALL030263	CTC-493L21.2(18632),CTD-2161E19.1(65319)	CTC-493L21.2	./+	+/+	5:86818912	5:86799953	intergenic	splice-site	duplication	downstream	upstream	1	3	4	123	185	medium	.	.	duplicates(2)	TGTTGGACCACAGCTTATAGATTCAGTAAGAAGAGACGACGAAGATCATAACTGGGTTGCCTTAAGGGATGAAGAAGTCTCATTGCATTGACTGGGAAGTTATATCCTTGGAAGAAAAGGATCATGGTCATAAACATAGCAG___GTTGAATCTTCCTTCCCAAAATCCCAATGATGCATCAGGCTACTCTTCGGATTCTCCGTATCACATGAAAGATACAG___GTTATGGAACATTGAAAACAACACTTGTCCCTCTGTGCCACACCTGAGGAAA|ATTCCTGGGCTTAAACATGTGACTCCAGTATATGCCCTGCACACAGTTCTTCTG___AAGCAGAAAGGAAAAATTTGCTCCAAAGATTCATGGCAAATCTGCTGTAGAACCAGAAGGACAAAACAAAACAGCTTCTAGACTGTTGGACCACAGCTTATAGATTCAGTAAGAAGAGACGAC	.	.	.
SJTALL030263	ITM2C	PTMA	+/+	+/+	2:230865145	2:231711348	splice-site	splice-site	deletion	downstream	upstream	1	5	1	1075	46476	medium	.	.	duplicates(6),low_entropy(1),mismatches(12)	GTGAAGATTAGCTTCCAGCCCGCCGTGGCTGGCATCAAGGGCGACAAGGCTGACAAGGCGTCGGCGTCGGCCCCTGCGCCGGCCTCGGCCACCGAGATCCTGCTGACGCCGGCTAGG|GACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCT___AATGAGGA...___GTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGG...___GATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATCTAAACGTGGTCACCTTCGAGTAGAG	in-frame	VKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR|DLKEKKEVVEEAENGRDAPANGNANE	.
SJTALL030263	PLXNA1	RP11-61K12.2(12095),PLXNA1(73)	+/+	./+	3:126989787	3:126988521	splice-site	intergenic	duplication	downstream	upstream	5	0	0	69	5	medium	.	.	duplicates(3)	GGATGCCTACCTGAGCCGGCCCGGCCGTGCCCTGGCCCACCAGCTGGGCCTGGCTGAGGACGAGGACGTGCTGTTCACTGTGTTCGCCCAGGGCCAGAAGAACCGCGTGAAGCCACCAAAGGAGTCAGCACTGTGCCTGTTCACGCTCAGGGCCATCAAGGAGAAGATTAAGGAGCGCATCCAGTCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCTGCTCAACAAGGAGCTGGGCTGCATCAACTCG|GGCTGAAGCTCCTGGCACCATGATGCTCACCCCAGCAGGACCAGAGCACCGAGGCCCAAGGCCCCAGC	out-of-frame	DAYLSRPGRALAHQLGLAEDEDVLFTVFAQGQKNRVKPPKESALCLFTLRAIKEKIKERIQSCYRGEGKLSLPWLLNKELGCINS|g*	.
SJTALL030263	SLC12A1	RP11-154J22.1	+/-	-/-	15:48289778	15:48323343	intron	intron	duplication/3'-3'	upstream	downstream	0	3	1	5	4	medium	.	.	duplicates(3)	GTGTAGCCCAAGTATACAGTGTTGATAAAATCTACAGTAGTGTAGTCGTGTCCTGGGGCCTCACATTCACTCACCACTCACTGACTCACCCAGAGCAACTGCCAGTCCTGCAAGTTCCACTCATG|GACTTCTCAGAGTCTTTAATGACCATTGTGAATTTCCAAGCTGGGCTATGTGCTCTGTAAGCATTTCCCAAGCACATGTGGCCATAGAACCATTTTTTGTAAAGGATATATTAGTAGTCTTTTGCTG___GACAAAAAAGCAGTTGTAAATGTTCAAAAAAAAGAAAAAGAAGTCAGGAAG___CCTGAC	.	.	.
SJTALL030263	MSL2	RP11-657O9.1(118215),RP11-237P21.1(367788)	-/-	./-	3:136194972	3:135558103	splice-site	intergenic	deletion	upstream	downstream	2	2	0	1302	8	medium	.	.	duplicates(3),low_entropy(1)	ATTTCTTTTCAACCGGGAGCCATTGGTGTCGAAGTGTCTGCAATGAACCCCGTGAATGCTACTGCTCTCTACATTTCCGCGAGCCGCCTAGTGCTCAACTACGACCCCGGAGACCCCAAGGCGTTTACTGAGATTAACAGGCTCTTGCCTTACTTCCGACAGTCCCTTTCGTGCTGTGTTTGCG|GCCTTTAGAACTGGACTGGAATTGTACTTTCCTGGGTCTCCAGCTTGCAGATGGCAGATTGTGGAACTTCTCAGCCTGCATAATCGT___ACCTGGAGGCAAAGGTATGGATGAGATCACAT	out-of-frame	MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVC|gl*	.
SJTALL030263	RGS6	RP6-114E22.1	+/+	+/+	14:71964875	14:71908165	splice-site	splice-site	duplication	downstream	upstream	1	2	1	109	57	medium	.	.	duplicates(1)	AGAAATAGGGACCGGCTGCTTTGGAAGAAACATGCTGTAG___TAAACACATCCATGTTATCTCTCcGAGATCAAGAAAGAGAATATTACCGTTCTTCCAGAAACCACCTCATGGGCCCTCCCA___TGTGAGTGAAGACACTCAGGATGGCTCAAGGATCCGGGGATCAAAGAGCAGTGGGGGTTGCTGACCCAGAGGAGAGTTCTCCAAACATGATCGTTTACTGCAAA|ATAATTGACAATAGGCTCCCATGGAAGTCTTCTGTGCATTTCTGCAAAAATTTAGGAAACATTAGGTTTGACACCATCATCATGTTTGCCAAGGCAGCAAAAATCCCAGCCGGCAAAGCTTCAAGTGTGATGAAGCGGAACAGCAAGGACAGCACGGAATGACTGATCATTTCAGAATGCCGTCTAG	out-of-frame	MAQGSGDQRAVGVADPEESSPNMIVYCK|iidnrlpwkssvhfcknlgnirfdtiimfakaakipagkassvmkrnskdste*	.
SJTALL030263	C9orf89	FAM166A	+/+	-/-	9:93096352	9:137245853	splice-site	splice-site	inversion	downstream	downstream	0	3	0	127	121	medium	.	.	.	GGGCAGACCGCTGGGGACTGCGGGCGGCGCTGTGTCCGTCGCCATGACAG|CTATGCCGGCTTCTTTCCGCAGCTGCGCTACCAGGTGGGGAACACCTATGGGCGTACCACGGGGCAGCTGCTCACAGACCCCAGTGTGCAGAAGAGCCCCTGCTCTGTGCTGTCCCCCATGTCCAAACCCAAGTTCATTGAGGACTTCAGCCAGTCC	out-of-frame	MT|ampasfrscatrwgtpmgvprgscsqtpvcrrapalccppcpnpsslrtsas	.
SJTALL030263	EIF6	NPHP4	-/-	-/-	20:35280053	1:5885091	CDS	intron	translocation	upstream	downstream	1	0	2	1253	4	medium	.	.	duplicates(2)	ATGTCACCACCTGCAATGACTACGTGGCCTTGGTCCACCCAGACTTGGACAGG___GAGACAGAAGAAATTCTGGCAGATGTGCTCAAGGTGGAAGTCTTCAGACAGACAGTGGCCGACCAG|TGGGCACTGATCTTGGTTGTGGAGTAGGACGGGGGCTCGGCTGGGAGCTTGGGCAGTGATCTTGGTTGCGGCGTAGGATGGGCTCGGCTGGGAGCTTGGGCAGTGATCTTGGTTGTGGAGTAGGACGGGTTCGGCTGGGAGCTTGGGCAGTGATCTTGGTTGTCGAGTAGGACGGGTTTGGCTGGGAGCTTGGG	out-of-frame	VTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQ|walilvve*	.
SJTALL030263	TUBGCP6	BRD1	-/-	-/-	22:50240204	22:49824331	splice-site	splice-site	deletion	upstream	downstream	3	0	0	576	192	medium	.	.	duplicates(1),mismatches(1)	CCCGTGCCAGACAATGCGGACCTCTCTGGGCTGGCTATTAAG___GTCCCACCGAGTGTGGATCAGTGGGAAGACGAAGGATTCCAGTCAGCGTCCAACTTGACTCCTGATTCCCAGTCTGAGCCCAGCGTGACCCCAGACGTGGACCTGTGGGAAGCCGCACTTACCTATGAGGCCAGCAAGCGGAGGTGCTGGGAGCGAGTTGGCTG|GTAATCATTACCAAATGAGGAGGAAAGGACGATGTCATCG	out-of-frame	PVPDNADLSGLAIKVPPSVDQWEDEGFQSASNLTPDSQSEPSVTPDVDLWEAALTYEASKRRCWERVGw|*	.
SJTALL030263	LA16c-352F7.1(65532),RP11-118F19.1(23646)	COX4I1	./+	+/+	16:85556363	16:85801205	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	234	4048	medium	.	.	duplicates(4),mismatches(2)	CGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|AATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATG___AAAG...ATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCAcTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAG	.	.	.
SJTALL030263	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	712	91	medium	.	.	duplicates(2)	ATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACG...CATGCTACCCACGCTGGAATGAGACGTTTGAATTTGAGCTGCAGGAGGGGGCCATGGAGGCGCTGTGCGTGGAGGCgTGGGACTGGGACCTTGTCAGCCGAAACGACTTCCTGGGCAAAGTGAGC	in-frame	IKSRACFPFAFCrdcqfpeaspatlpvqpael|TGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH	.
SJTALL030263	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102593844	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	712	76	low	.	.	duplicates(6),low_entropy(1),mismatches(1)	CACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|AATGTACCGTTCATCGCCGTCACCAGCTTCCTGTGCCTGCGCTTCTTCTCTCCCGCCATCATGTCGCCCAAGCTCTTCCACCTGCGGGAGCGCCACGCGGACGCCCGCACCAGCCGCACCCTGCTCCTGTTGGCCAAG___GCAGTCCAGAACGTGGGCAACATGGAC	out-of-frame	TINKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|myrsspspascacasslppscrpssstcgsatrtpapaapcscwprqsrtwatw	.
SJTALL030263	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	712	91	medium	.	.	duplicates(2)	ATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACG...CATGCTACCCACGCTGGAATGAGACGTTTGAATTTGAGCTGCAGGAGGGGGCCATGGAGGCGCTGTGCGTGGAGGCgTGGGACTGGGACCTTGTCAGCCGAAACGACTTCCTGGGCAAAGTGAGC	out-of-frame	IKSRACFPFAFCrdcqfpeaspatlpvqpael|tgssdpycivkvdnepiirtatvwktlcpfwgeeyqvhlpptfh	.
SJTALL030263	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102593844	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	712	76	low	.	.	duplicates(6),low_entropy(1),mismatches(1)	CACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|AATGTACCGTTCATCGCCGTCACCAGCTTCCTGTGCCTGCGCTTCTTCTCTCCCGCCATCATGTCGCCCAAGCTCTTCCACCTGCGGGAGCGCCACGCGGACGCCCGCACCAGCCGCACCCTGCTCCTGTTGGCCAAG___GCAGTCCAGAACGTGGGCAACATGGAC	out-of-frame	TINKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|myrsspspascacasslppscrpssstcgsatrtpapaapcscwprqsrtwatw	.
SJTALL030263	AQP4-AS1	KCTD1	+/-	-/-	18:26701625	18:26629237	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	1	0	28	398	51	low	.	.	duplicates(28),low_entropy(2),mismappers(6),mismatches(4)	GAGCCTCATACCCAGAGGGAACAAACGCTCCCCAAAAAGAGTTACAGAAACCATCCTGAGAGATTTTAAGCAGAAGCAAAGTTCAAAGATCCAAGAGGAGAGACGAAGAGAGT|CTCCCGTCACTAGCTTTTTCTCCTCAAGCCTGCACTGCACACCAACTGGGACGGAGGGTGCAGATGAATAAAGGCAAATCCATCACCAAAAGTAAGAAAACCCTTCCACACTTCCTCCC	.	.	.
SJTALL030263	ATP8A2	ATP8A2	+/+	+/+	13:25774959	13:25769046	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	8	2	0	44	71	low	.	.	duplicates(10)	CTGAGATAGTGGATGTGGTGAAGAAGCGGGTGAAGGCCATCACCCTCGCCATCGGAGACGGCGCCAACGATGTCGGGATGATCCAGACAGCCCACGTGGGTGTGGGAATCAGTGGGAATGAAGGCATGCAGGCCACCAACAACTCGGATTACGCCATCGCACAG___TTTTCCTACTTAGAGAAGCTTCTGTTGGTTCATGGAGCCTGGAGCTACAACCGGGTGACCAAGTGCATCTTGTACTGCTTCTATAAGAACGTGGTCCTGTATATTATTGAG|AGTGTCTCCTCTGCAGAAGTCTGAGATAGTGGATGTGGTGAAGAAGCGGGTGAAGGCCATCACCCTCGCCATCGGAGACGGCGCCAACGATGTCGGGATGATCCAGACAGCCCACGTGGGTGTGGGAATCAGTGGGAATGAAGGCATGCAGGCCACCAACAACTCGGATTACGCCATCGCACAG___T	out-of-frame	EIVDVVKKRVKAITLAIGDGANDVGMIQTAHVGVGISGNEGMQATNNSDYAIAQFSYLEKLLLVHGAWSYNRVTKCILYCFYKNVVLYIIE|svssaev*	.
SJTALL030263	CLN8	ARHGEF10	+/+	+/+	8:1771597	8:1857960	splice-site	splice-site	deletion/read-through	downstream	upstream	7	1	1	145	17	low	.	.	duplicates(2),mismatches(2)	GGTTTCACATCACGACAGCAACGGGATTCTTTTGCTTTGAAAATGTTGCAGTCCACCTGTCCAACTTGATCTTCCGGACATTTGACTTGTTTCTGGTTATCCACCATCTCTTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGTTGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAG|AAAATGAAATGAAATATGATACCAATAATAATGAAGAGGAAGAGGGAGAACAGTTCGATTTTGACAGTGGAGATGAAATCCCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGGAGGTGCTGGAGCCAGTGAAGCCCCTGCACCCACAG___GAGGTGAGGATGGAGCTGGAGCAGAAAC	out-of-frame	FHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLK|kmk*	.
SJTALL030263	CLN8	ARHGEF10	+/+	+/+	8:1771597	8:1843353	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	2	145	8	low	.	.	duplicates(2)	GGTTTCACATCACGACAGCAACGGGATTCTTTTGCTTTGAAAATGTTGCAGTCCACCTGTCCAACTTGATCTTCCGGACATTTGACTTGTTTCTGGTTATCCACCATCTCTTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGTTGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAG|GAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGACCAGCGAGAGCCCCTGCCTCCCGCTCCTGCAG___AAAATGAAATGAAATATGATACCAATAATAATGAAGAGGAAGAGGGAGAACAGTTCGATTTTGACAGTGGAGATGAAATCCCAGAAGCGGACAGACAGGCCCC	out-of-frame	FHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLK|ellpltelreasgaaawtsespclpllqkmk*	.
SJTALL030263	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	7	0	99	18	low	.	.	duplicates(11),low_entropy(1)	CTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCT	.	.	.
SJTALL030263	LINC01225	TINAGL1	+/+	+/+	1:31540885	1:31583149	exon	splice-site	deletion/read-through	downstream	upstream	4	3	1	145	73	low	.	.	duplicates(4),mismatches(2)	GTTTGAGGAG___CAGTTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTAC...AG___...GTGA??CCCCgTCTCTACTAA?AATACAAAA___GCCTCAGCAGTTGAGCTGGTTCACCTTGGAATCTGACTCTGACAAGCAAAAGGAAGCAGAGTCTGATCATCTTTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___CTGGCAGGCTGGGAACCACAGCGCCTTCTGGGGCATGACCCTGGATGAGGGCATTCGCTACCGCCTGGGCACCATCCGCCCATCTTCCTCG	.	.	.
SJTALL030263	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31583149	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	1	422	73	low	.	.	duplicates(2),low_entropy(1)	CGCTGACTGCCGGTGCATGTTGGAAATGGGCCACAGGGCTGGGCATGATATGAGCTGCCTGGACATTGGAGGGGGCTTCCCCGGAATGGAGGGCTCCGGGCCCAAGTTTGAGGAG___TTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___CTGGCAGGCTGGGAACCACAGCGCCTTCTGGGGCATGACCCTGGATGAGGGCATTCGCTACCGCCTGGGCACCATCC	.	.	.
SJTALL030263	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31579204	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	422	31	low	.	.	duplicates(2)	GGGGAAGAAAAATGGACTTGGCCAGAGATGGGGAAGAACGTACGCAAAAAG___CAGTTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|GATGTATGCATGGAGGTCGTATCTATCCAGTCTTGGGAACGTACTGGGAC	.	.	.
SJTALL030263	LINC01225	TINAGL1	+/+	+/+	1:31506406	1:31579204	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	604	31	low	.	.	.	GGACATTGGAGGGGGCTTCCCCGGAATGGAGGGCTCCGGGCCCAAGTTTGAGGAG|GATGTATGCATGGAGGTCGTATCTATCCAGTCTTGGGAACGTACTGGGACAACTGTAACCGTTG___C	.	.	.
SJTALL030263	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	0	134	201	low	.	.	duplicates(2),mismatches(1)	CTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGAC	.	.	.
SJTALL030263	C6orf183	CCDC162P	+/+	+/+	6:109270176	6:109285976	exon	splice-site	deletion/read-through	downstream	upstream	2	4	0	26	12	low	.	.	duplicates(2)	CAGGAGTGGAAAATATGCAGGTGACTCTTGCATGCCAAGCTGCTCAGAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGCACCCCTCAAGGGAGCTGTCCTGCTAATGTCAAG|GATGAAATTGGAAAAGTCAAGAGAGATGTTATGGTTGAATATTGTCAGAA___GTTTAACCACCGCATGTCTCACTATGCTCTTCGGGGTCAGATCATGGCATACTGCAATAGCCTGAGAGATCTTCTGGAAGATTTTCCTACCATCAGGGACACCTTTTTCATGGTAGGGCAACCACAAGAGAAGAAGGGGTTGAGAGACTCCAAGGAGGGCCTCAAGGCTGACCCCAG___AAGATTTCAGCCCCGGCCACGATGTTTGCTGTCAGCGGATGGAAAAGTCTTCCTCAATTGATGGTTCATACCCC	.	.	.
SJTALL030263	RNU6-36P	SNORA53	+/+	+/+	12:97721830	12:98599655	3'UTR	exon	deletion	downstream	upstream	0	0	6	2291	10051	low	.	.	duplicates(5)	ACATATACTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCATATTTTTAGAtCcAC...|...CCTTTGTGGATGAATCTTGAACTGAGTTCCACTTGTAAACTTCTTGTTTCTTGTGGTTCCAGTAGTCAAAGAAACATCCAGCAACTTTTTTGGTTGTATAGTCAAAGGTGCTTGAGTCATTGGCATGTAAGAG	.	.	.
SJTALL030263	SEC16A	SEC16A	-/-	-/-	9:136474049	9:136477684	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	1	3	2	240	287	low	.	.	duplicates(3)	CACAGCCAGTGCCTGCACTTGCCCCCGGCCCACCGCCTCAGGACCTGGCCGCCTACTACTACTACCGGCCTTTGTACGATGCCTACCAGCCTCAGTACTCTTTGCCGTACCCACCGGAGCCTGGCGCAGCCTCCCTCTATTACCAG|CTCCAATTAAGGAACAGCTATATCCTGCTTCCTTCTGTAAGCAGCATCGACTTGTGCAAGGGTTCAGTCATGCAGCCACCGCCCCAGACGGTCCCGTCTGGCATGGCTGGGCCACCTCCAGCCGGGAATCCTCGGAGCGTGTTCTGGGCTAGCAGCCCTTACAGGAGACGGGCTAATAATAATGCA	in-frame	QPVPALAPGPPPQDLAAYYYYRPLYDAYQPQYSLPYPPEPGAASLYYQ|lqlrnsyillpsvssidlckgsvMQPPPQTVPSGMAGPPPAGNPRSVFWASSPYRRRANNN	.
SJTALL030263	CD300LF	CD300E(16221),RAB37(30619)	-/-	./-	17:74695725	17:74639959	splice-site	intergenic	deletion/read-through	upstream	downstream	2	1	2	178	12	low	.	.	duplicates(1)	GTGGCCGCCTCACTCTTGGCTTGGAGGATGATGAAGTACCAGCAGAAAG___GTACTGCAGCCCCTGGAGGGCGACCTCTGCTATGCAGACCTGACCCTGCAGCTGGCCGGAACCTCCCCGCgAAAGGCTACCACGAAGCTTTCCTCTGCCCAGGTTGACCAGGTGGAAGTGGAATATGTCACCATG|GTGCTTCTAACGCTGCCAGCTCCTGATGCCAGCACTCCTTTCTCAGCCTGCTCTCTGCTCAAATTGAGTATTAAAAAAAGAAATAAAAGCCACAAATGGGCTGAT	out-of-frame	VAASLLAWRMMKYQQKGTAAPGGRPLLCRPDPAAGRNLPAKGYHEAFLCPG*pggsgichh|gasnaass*	.
SJTALL030263	CXorf21	AC005926.1(232193),CXorf21(11453)	-/-	./-	X:30576752	X:30547371	splice-site	intergenic	deletion/read-through	upstream	downstream	2	3	0	837	15	low	.	.	duplicates(3)	GTCAGTGTGAGAAGAAGATTGTTTCTGAGCTTGAGAAGCTTCTGGAGGATTGAAGAGTATTTGAAGTCTGTGTCAAACATCCATATCATAAGTGGAATTTTGGAGATATTCAAAG|AAAACTCAGCACTGAAAATTATCACAATTAATTTCACATGGGTATTTGATCTCAATGAAAAGTGATGGTGTCATATACCTTTGATCTTCTTCAG___GAAGGACACTGGTAGATTCTCTTGTCTCAGCAGCAAAGTATTTGAAGATATATCAAGTGATGTTGCCAG___GCAAGAATACCCACATCAACAATT	.	.	.
SJTALL030263	CHRNA6	CHRNA6	-/-	-/-	8:42755846	8:42757037	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	3	2	0	184	145	low	.	.	duplicates(1)	GCTGCCCCAGGTCCTGCTGATGAGGTGGCCTCTGGACAAGACAAGGGGCACAGGCTCTGATGCAGTGCCCAGAGGCCTTGCCAGGAGGCCTGCCAAAGGCAAGCTTGCAAGCCATGGGGAACCCAGACATCTTAAAGAATGCTTCCATTGTCACAAATCAAATGAGCTTGCCACAAGCAAGAGAAGATTAAGTCATCAGCCATTACAGTGGGTGGTGGAAAATTCGGAGCACTCGCCTGAAGTTGAAGATGTGATTAACAGTGTTCAGTTCATAGCAGAAAACATGAAGAGCCACAATGAAACCAAGGAG|ATCTGGAATGATTATAAATTGCGCTGGGATCCAATGGAATATGATGGCATTGAGACT...CGCGTTCCTGCAGATAAGATTTGGAAGCCCGACATTGTTCTCTATAACAAGTATGGGTCTCTGACCACCGTAGCCTCTTTCCAAAGCTGCTGTTGGTGTATTCTGGCCTATAGCAAAGGGAG...AGCTCTTCTTAAATACAATGGCATGATAACCTGGACTCCACCAGCTATTTTTAAGAGTTCCTGCCCTATGGATATCACCTTTTTCCCTTTTGATCATCAAAACTGTTCCCTAAAATTTGGTTCCTG	in-frame	LPQVLLMRWPLDKTRGTGSDAVPRGLARRPAKGKLASHGEPRHLKECFHCHKSNELATSKRRLSHQPLQWVVENSEHSPEVEDVINSVQFIAENMKSHNETKE|IWNDYKLRWDPMEYDGIE	.
SJTALL030263	BUB1B	BUB1B	+/+	+/+	15:40202694	15:40183714	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	1	4	0	195	196	low	.	.	duplicates(6)	TGTTGTGCCAG___AGAAACTTCACTTGCGGAGAACATTTGGCAGGAACAACCTCATTCTAAAG___GTCCCAGTGTACCTTTCTCCATTTTTGATGAGTTTCTTCTTTCAGAAAAGAAGAATAAAAG___TCCTCCTGCAGATCCCCCACGAGTTTTAGCTCAACGAAGACCCCTTGCAGTTCTCAAAACCTCAGAAAGCATCACCTCAAATGAAGATGTGTCTCCAGATGTTTGT|ACAATTCCAAGCTCGAGTGTCTCGGCAAACTCTGTTGGCACTTGAGAAAGAAGAAGAGGAGGAAGTTTTTGAGTCTTCTGTACCACAACGAAGCACACTAGCTGAACTAAAGAGCAAAGGGAAAAAGACAGCAAGAGCTCCAATCATCCGTGTAGGAGGTGCTCTCAAGG___CTCCAAGCCAGAACAGAGGACTCCAAAATCCATTTCCT...GTAGAATTACTGTTTTTGATGAAAATGCTGATGAGGCTTCTACAGCAGAGTTGTCTAAGCCTACAGTCCAGCCATGGATAGCACCCCCCATGCCCAGGGCCAAAGAGAATGAGCTGCAAGCAGGCC	out-of-frame	CCARETSLAENIWQEQPHSKGPSVPFSIFDEFLLSEKKNKSPPADPPRVLAQRRPLAVLKTSESITSNEDVSPDVC|tipsssvsansvgt*	.
SJTALL030263	NPIPB4	SMG1P3	-/-	-/-	16:21847413	16:21453074	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	3	86	824	low	.	.	duplicates(7),mismappers(7)	CTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCgTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG|GTTTGAAAAGGCCTCTGTGGAGTACCAGGAACACCTGTGTGCCATGACAGGTGTTGATTGCTGCATCTCCAGCTTTGACAAATCGG	out-of-frame	LADHHHRGTDFGGSPWLHVIIAFPTSYKVVITLWIVYLW|v*	.
SJTALL030263	CTD-2281E23.2	DLGAP2	+/+	+/+	8:1258883	8:1501366	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	2	0	112	38	low	.	.	duplicates(4),low_entropy(2)	AGGGAAGTGCTGCCATTCTCCCGGTGTCCTAAG___GTTTTGCCTGGCATTCTGCAGAAGCATTGCTGTATCTTACCAGACAGGAATACAG___A...CTCTGCGCTAAGCTGAGGTTTTGTAGACtCGGAGGAGGTTGGTGTCCATAGTGTGTAACTAGAGGCTGGGAGAGCTGGTGTGGAGCCTGCGTGGGCAGTTGGACCCCTTTGTCGTTGGTGTCCTCG...CAGAGTCGCAGTGCACGCTCTGCGGGGAGCCGGAAG|AGGAAGAAGCTGGAGACTTGGTCCAGCCGGGCATCAGCTTTCCGGGGCCGGCAGAGGAGGATCTAG___ACCCGCAGTACTCATGGTCGCCCACGCAGCACTTCAATGAGGAGCGCTACTCGCCCGCGCCCAGGAGCATGAAGGGCCTTTCCGGAAGTCGGACCCAGCCGCCGCTGTGTTCCGGGCACACGTG	.	.	.
SJTALL030263	CMIP	PLCG2	+/+	+/+	16:81702534	16:81962012	intron	3'UTR	deletion/read-through	downstream	upstream	0	0	4	21	679	low	.	.	duplicates(1),low_entropy(9),mismappers(2),mismatches(32)	CTGAGACCAAGACCACCGTGgTGCCTTGTACCACCAAGAAAATAACGATGG...|...CCCCTTCCTcCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCgGTCGAAGAGGACGACCAtCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTaGAACCTCCAAACAAGCTCTCAAG	.	.	.
SJTALL030263	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	3	0	59	26	low	.	.	duplicates(2),mismatches(2)	AGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAAC	out-of-frame	ENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
SJTALL030263	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69088366	11:69135435	3'UTR	intergenic	deletion/read-through	downstream	upstream	2	1	1	48	34	low	.	.	duplicates(2)	CTCCACAGGGACCTTTCAGACAAAAATGCAAGAAGCAGCGGCCTCCCCTGTCCCCTGCAGCTTCCGTGGTGCCTTTGCTGCCGGCAGCCCTTGGGGACCACAGGCCTGACCAGGGCCTGCACAGGTTAACCGTCAGACTTCCGGGGCATTCAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTG	.	.	.
SJTALL030263	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	2	1	1	185	39	low	.	.	duplicates(9)	CAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTG	out-of-frame	QGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|wlyassssscs*	.
SJTALL030263	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	196	560	low	.	.	duplicates(7)	GTTTACTgTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGC	in-frame	VYcEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMN	.
SJTALL030263	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	185	560	low	.	.	duplicates(6),low_entropy(1)	CGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTG	out-of-frame	RLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
SJTALL030263	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100058666	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	310	594	low	.	.	.	GATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAG	out-of-frame	DSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|git*	.
SJTALL030263	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	310	560	low	.	.	.	GTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGG	out-of-frame	VGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
SJTALL030263	IRX1	IRX1	+/+	+/+	5:3600681	5:3599225	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	1	2	1	538	414	low	.	.	duplicates(4)	CTATTGCCCCGGGGGCACTCAATGGAGACAAGGCCTCGGTCCGCAGCAGCCCCACGCTCCCAG___AGAGAGACCTCGTCCCCAGGCCAGATTCGCCGGCACAGCAGTTAAAGTCGCCCTTCCAGCCGGTACGCGACAA|GGCTCGCAGTATGAACTGAAGGACAACCCTGGGGTGCACCCCGCCACCTTCGCAGCCCACACGGCGCCGGCTTATTACCCCTACGGCCAGTTCCAATACGGGGACCCCGGGCGGCCCAAGAACGCCACCCGCGAGAGCACCAGCACGCTCAAGGCCTGGC	out-of-frame	IAPGALNGDKASVRSSPTLPERDLVPRPDSPAQQLKSPFQPVRDk|arsmn*	.
SJTALL030263	PRRT3-AS1	CRELD1	+/+	+/+	3:9948469	3:9934420	splice-site	splice-site	duplication	downstream	upstream	0	4	0	13	139	low	.	.	duplicates(5),inconsistently_clipped(1)	GTGCAATGTGGGCTTACTGCAGCCTTGACCTCCAGGACAAGTGATCTCCCACCTCAGCCTCCGGAATAGCTGGGACTACAG|GTCCCCAGCCTGGGTAAAGATGGCCCCATGGCCCCCGAAGGGCCTAGTCCCAGCTgTGCTCTGGGGCCTCAGCCTCTTCCTCAACCTCCCAGGACCTATCTGGCTCCAGCCCTCTCCACCTCCCCAGTCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGGGGACTGGTTGACAGCTTTAACAAG___GGCCTGGAGAGAACCATCC	.	.	.
SJTALL030263	STK3	VPS13B	-/+	+/+	8:98705189	8:99033665	intron	intron	deletion/read-through/3'-3'	downstream	upstream	0	0	3	12	6	low	.	.	duplicates(4),low_entropy(1),mismappers(3),mismatches(5)	CTGTAATCCCAGCACTTTGGGAAGCTGAG|GTGGGTGGATCACTTGAGGTCAGGAGTTCgAGACCAGCCTGACCATCATGGTGAAACCGCATCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGTGGG	.	.	.
SJTALL030263	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	30	56	low	.	.	duplicates(1),mismappers(1)	GCCATGGCAGTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCAGCCTGCTCTTCCTGGTGGCCCATCTCGCCCTCCAGATCTGCCTGCATAcTGTGCCCCGCCTGGACCAGCTCCTGGGACCCAGCT___GCAGCCGCTGGGAGACCCTCTCGCGACACATAGGGGTCACAAG___GCTGGACCTGAAGGAC	.	.	.
SJTALL030263	AC253572.1	NBPF26	+/+	+/+	1:120793496	1:120807607	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	152	82	low	.	.	duplicates(2),mismappers(2),mismatches(2)	GACTGATGTCAATGAGTGTGACATTCCAGGACACTGCCAGCATGGTGGCACCTGCCTCAACCTGCCTGGTTCCTACCAGTGCCAGTGCCTTCAGGGCTTCACAGGCCAGTACTGTGACAGACTGTATGTGCCCTGTGCACACTCGCCTTGTGTCAATGGAGGCtCCTGTCGGCAGACTGGTGACTTCACTTTTGAGTGCAACTGCCTTCCAG|AGTATGAAGAGTGTAAAGACCTCATAAAATTTATGCTGAGGAATGAGCGACAGTTCAAGGAGGAGAAGCTTGCAGAGCAGCTCAAGCAAGCTGAGGAGCTCAG___GCAATATAAAGTCCTGGTTCACTCTCAGGAACGAGAGCTGACGCAGTTAAAGGAGAAGTTACGG	in-frame	TDVNECDIPGHCQHGGTCLNLPGSYQCQCLQGFTGQYCDRLYVPCAHSPCVNGGsCRQTGDFTFECNCLP|eYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLKEKL	.
SJTALL030263	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	0	0	51	23	low	.	.	duplicates(2),low_entropy(1),mismappers(3)	GGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAG	out-of-frame	GTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
SJTALL030263	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121455	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	10	7	low	.	.	duplicates(2)	CCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|CTGGGCAGATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCTGTCTGGAACCGCTTCCTCCCAGACTAAGTGAG	.	.	.
SJTALL030263	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121447	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	10	7	low	.	.	duplicates(1),low_entropy(1)	CGGGATGGGGAGCTGGACCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|ATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCTGTCTGGAACCGCTTCCTCCCAGACTAA___G	.	.	.
SJTALL030263	BEND4	SLC30A9	-/-	+/-	4:42125583	4:42031457	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	2	0	434	20	low	.	.	duplicates(2)	AGAAAATGAAGAGCTCAGAAGGAAATTAGAGAGCATCCCAG___TGCCCTGCCAGACCGTTTTAGATTACTTGAAGATGGTTCTGCAGCACCACAACCAACTCCTGATACCACAGCCAGCTGACCAGCCGACAGAG|CATCTTCTTACATTGACGACTAATCACTTCCAATTGAAGTCAGGAGAAAGCTGCTCAACTaCACTATTTAATGGATTTTGAAATATGTAAATTTCCTCTGCACTTGCATGGAAATCTGAAAAACACTTCTGGAACTATAGGTTGGGC	out-of-frame	ENEELRRKLESIPVPCQTVLDYLKMVLQHHNQLLIPQPADQPTE|hlltlttnhfqlksgescsttlfngf*	.
SJTALL030263	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	1	1	1	9	42	low	.	.	duplicates(2),low_entropy(2)	CTCCTTATTCCTTGTGTGCTGTACTTTGTCTTGATTTCCTGTACTCTGCACCAAGCCAGGAGATG___GTCTGTTCTTCCCCTGGATTGTAAACTCCTTGATGTCTGGGTCATCTCAGCTCATGAGCTG...GGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACAT	.	.	.
SJTALL030263	EEF1A1P12	ST6GAL2	-/-	-/-	2:106698624	2:106807711	exon	intron	deletion/read-through	downstream	upstream	0	0	3	4	1	low	.	.	mismatches(2)	...CGGGCAAGTCCACCACTACTGGCCATCTGATCTAtAAAtGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAG...CCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGcGgGAACgTGGTATCACCATTGATAtCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCaTTGATGCCCCAG|...CCTTCCCCGA	.	.	.
SJTALL030263	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511372	7:23374460	exon	intron	deletion	downstream	upstream	0	0	3	166	12	low	.	.	low_entropy(2),mismatches(7)	.	.	.	.
SJTALL030263	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	2	1	0	152	3	low	.	.	duplicates(1)	CCAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACCTGCTACCACGGCCCTTCCCCAGTCTCAATAAAAAGCC	.	.	.
SJTALL030263	C21orf58	C21orf58	-/-	-/-	21:46314716	21:46315547	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	3	0	0	40	49	low	.	.	.	ACCTCCTGGACGAGCTCTCTCGGGCCCAGGCCTGGAGCGGGCCAAGCAGAGGAGCCCTCGGGTCAGCCCTGCCCCCAGAGCTGCCCCCCACGGGCATCCTACCCACTGCCTCCCCATCCCCGCTGGCC?CAGACCCGCCAAGGATCATCCTGCCTACG|GAAATGAGGACCGGCCGGACGATGCCCTGCAGACTGCTCTGAAGAGAAGGAGGGACCTTCTGCAGAGAC	out-of-frame	LLDELSRAQAWSGPSRGALGSALPPELPPTGILPTASPSPLA?DPPRIILPT|emrtgrtmpcrll*	.
SJTALL030263	WNK1	ERC1	+/.	+/.	12:880581	12:997182	intron	intron	deletion/read-through	downstream	upstream	0	0	2	17	8	low	.	.	duplicates(3),mismappers(1),mismatches(3)	.	.	.	.
SJTALL030263	CHFR	ANKLE2	-/-	-/-	12:132836707	12:132755133	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	2	0	280	559	low	.	.	low_entropy(1),mismappers(1),mismatches(4)	CACTTTTCACGGTTGTCTCCTTCTGAGGCG|GTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGGATTGAAATGTGGACCCATTACATCAACTACAAGGTTCATTTTTGAGAAAAAATTGGCTCAGGCTTTACTGGAGCAAGGAGGAAGGCTGTCTTCTTTCTACCACCATGAGGCAGGTGTCACAGCTCTCAGCCAGGACCCACAAAGGATTTTGAAGCCAGCTGAAGGGAACCCAACTGATCAGGCTGGTTTTTCTGAAGACAGAGATTTTGGTTACAGTGTGG	.	.	.
SJTALL030263	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	1	1	32	30	low	.	.	duplicates(2),mismappers(1)	AACAACGAACGGGTGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACATTCTCTTCTGCACAAGTTGCC	out-of-frame	NNERVFDHKQGTYGGYFRDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTFNILFCTSC	.
SJTALL030263	UBE2D3	SLC9B1	-/.	-/.	4:102815275	4:102909982	intron	intron	deletion/read-through	downstream	upstream	0	0	2	137	3	low	.	.	mismappers(2),mismatches(1)	.	.	.	.
SJTALL030263	CDS2	CDS2(42681),UBE2D3P1(51820)	+/+	./+	20:5197260	20:5240568	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	0	2	64	0	low	.	.	mismappers(1),mismatches(1)	TCTGGGCTCAGAGAACCCGTCCAGGGAGATTTGAAGCCATGGGTTATCTTCTAGAGTTGATACTGATAATATATTTTAATTTTTATTGATGTTTAATACCTTCTGAAACAGGAGGGTAAGATCAGATGGGAAGCCCCTCTGTTGAAGGATCTTGGGAACCTTGGTGGTTTTTTTTTTTTggTTttTTTTTTTTT...|...TCGTGCTGTG	.	.	.
SJTALL030263	SUMF1	AC026188.1	-/-	-/-	3:3777726	3:3596631	exon	intron	deletion/read-through	upstream	downstream	0	0	2	179	7	low	.	.	duplicates(1),mismappers(1),mismatches(1)	AGCAACAAGCTATCAAAGACAGAATTTGCACAACAGGACAAAGGAAG___GCTATAAGCTTCTTGAAGGCAGAGATTATATCTCATTCAATCTTCTATCTCAAGTATCTACTGCAAAACCAAGCAAAC...|...GCCTGAAGAAGAGAAGGAGGCGGCTGCATATGTGATGCGTATGTGATACATATAAGACACTAGACCTGGATCCCACCCTGAAATAAGTCATTCTGCACTTGGGG	.	.	.
SJTALL030263	GTF2H2C	RP11-1415C14.3(155994),GTF2H2B(428)	+/+	./+	5:69592330	5:70414924	3'UTR	intergenic	deletion	downstream	upstream	0	2	0	77	16	low	.	.	duplicates(2)	CTTCATTTAAAACATGAAAGGATAATCTGACTTAAGAAACTTTTTGCTAAGAAAAG|TGCTTAGACATGCATCAGGCTCAAAGTAGATGCTCAATGTTTGTTGAATGAACAGCAAGAGCAATGGAGGAGTCCTGAAATACACAGCAAGAAGCAAGGATAATTCTGGCTTTACTTCTGTGGCCAGGGTCCTTCATCCCAAC	.	.	.
SJTALL030263	LARS2	LIMD1	+/+	+/+	3:45538549	3:45595962	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	12	234	low	.	.	mismappers(1)	CCTCCGTCTCATATTCAGATGTGAGTTTTAATAGGATTCCATCTGAGGAACAAGCAGGAATCTTCTTTCTCCTTCTGCCAAAAGGCACATCT...|...GCAGGGTGCGGTCCCTGGGCTGGGGCCGAAGCCTGGCTGCACAGACCTTGGCACTGGTCCCAAGCTCAGCCCCACCAGTCTTGTCCATCCAGTGATGTCCACCCTGCCTGAGTTATCTTGTAAAGA	.	.	.
SJTALL030263	FAM193A	RNF4	+/+	+/+	4:2639859	4:2596084	splice-site	splice-site	duplication	downstream	upstream	0	2	0	161	68	low	.	.	duplicates(3)	CTGGTCTTTTCGGAGCCACTTCTTCAGAGCAACTTGCCCGCACTGGTGTCACAGATCAG|ACTCCTTTTAGTTTTGGCATGAATCATAGGACACCACCCTACCCTGCTGGGGATTATTGTCTTCTGTGCAGAAGTGAACGGAAAGACTCATCATTCTTAGAGAGTGGAATTAAGACTGCGAGCAAATTGGCCCTTTCCATGGCTCCCAAGGG	out-of-frame	LVFSEPLLQSNLPALVSQIr|lllvla*	.
SJTALL030263	FAM193A	RNF4	+/+	+/+	4:2672372	4:2596084	splice-site	splice-site	duplication	downstream	upstream	0	1	0	153	68	low	.	.	.	CACTGTTCCACACCTGCCACGCCCTCTCgTCCACCCCACCTTGTATGCAACGCCCCCCTTCACACACAGTAAG|ACTCCTTTTAGTTTTGGCATGAATCATAGGACACCACCCTACCCTGCTGGGG...ACTGCGAGCAAATTGGCCCTTTCCATGGCTCCCAAGGGCAACAGCGTGCTGCACCTGCCACTGTGGGTGTGCCCGGACTGCCGCAGGACCGTGGAGAAGGAGGAGAGGCATGGCGGCCTTGACCAG	out-of-frame	TVPHLPRPLvHPTLYATPPFTHSK|tpfsfgmnhrtppypag	.
SJTALL030263	FAM193A	RNF4	+/+	+/+	4:2639859	4:2625262	splice-site	splice-site	duplication	downstream	upstream	1	0	0	161	126	low	.	.	.	CAGCACCTTCCTTGGCACTCTG___GAAAATGAACACTTGAAAAAGTTCCAAGTGACGTGGGAACTGCATAATAAACACCTGTTTGAAAATCTGGTCTTTTCGGAGCCACTTCTTCAGAGCAACTTGCCCGCACTGGTGTCACAGATCAG|AGCCAAGATTTTCTTCTTCAC	out-of-frame	STFLGTLENEHLKKFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIr|akifff	.
SJTALL030263	PPP4R2	GXYLT2	+/+	+/+	3:72998158	3:72908496	splice-site	CDS	duplication	downstream	upstream	1	0	0	1279	1265	low	.	.	duplicates(2)	CGATAAGCAACCAACGTTCAGAGCACTCTATGAAGCAATACGGGAT___ATTTTGAGAAGAGGGGGAAAAAGGAAGTTTGTCCTGTCCTGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAAT|CCACAGGAAGATCCAATTCCACATCTTCACTGAAGACTCTCTGAAGCCCGAGTTTGATAAGCAG	out-of-frame	i|HRKIQFHIFTEDSLKPEFDK	.
SJTALL030263	PPP4R2	GXYLT2	+/+	+/+	3:72998158	3:72957229	splice-site	splice-site	duplication	downstream	upstream	1	0	0	1279	1042	low	.	.	.	TGACGATAAGCAACCAACGTTCAGAGCACTCTATGAAGCAATACGGGAT___ATTTTGAGAAGAGGGGGAAAAAGGAAGTTTGTCCTGTCCTGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAAT|AACAGCATGATTCCAACAGGCCTGGCTTGGGAGGACATGTTGTACCCTCTGTACCAGAAGTACAAGAATGCCA	out-of-frame	i|ta*	.
SJTALL031201	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	33	42	0	1053	286	high	.	.	duplicates(24),low_entropy(5),mismappers(2),mismatches(3)	GAGAAATAAAAAAAAAAAAAAA...AAGCAATAAAAGTAGGTCTGCCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAGGCAAGTGAGCAATTAAAAATAAATCTTTCATGATTTGtTCCCACAGG	.	.	.
SJTALL031201	TCF7	SPI1	+/+	-/-	5:134138164	11:47360040	splice-site	splice-site	translocation	downstream	downstream	16	35	2	581	378	high	.	.	duplicates(20),mismatches(11)	CGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGtG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___...AATTGGCCAAG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___...CACTCACCCACCC...___...CC...___...TCTCATTTTTCAGCACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCC	in-frame	lifqHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQ|dHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSP	.
SJTALL031201	TCF7	SPI1	+/+	-/-	5:134116033	11:47360040	splice-site	splice-site	translocation	downstream	downstream	4	4	2	1081	378	high	.	.	duplicates(3),inconsistently_clipped(1)	CTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCC	out-of-frame	LGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|titgtstpttctassrasprttsrssracsprscssstatwswsrctssippwchpipvlatrsptcpgcassthpc	.
SJTALL031201	TCF7	SPI1	+/+	-/-	5:134138237	11:47360040	splice-site	splice-site	translocation	downstream	downstream	0	2	2	151	378	high	.	.	mismatches(1)	CCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAcCTCgCgCTCgACGAACATTTCAACAGCCCACATCCCACCCCaGCACCgGCGGACAaCAGCCAGcAGC...GGGGAGGGGCCCAGTGAAACCAGAGCCTAAGGGCCAAGACCCCAGCTTCTGAGACCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCC	.	.	.
SJTALL031201	TCF7	SPI1	+/+	-/-	5:134116086	11:47360040	splice-site	splice-site	translocation	downstream	downstream	1	0	2	517	378	medium	.	.	.	CTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTGGTAAGTGGACCCCGCAGCCAGTGCCGCCCTGTGCTTGCAGCCTCCTTGACCAG|ACCATTACTGGGACTTCCACCCCCACCAC...TCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCC	out-of-frame	MYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLVSGPRSQCRPVLAASLTr|pllglpppp	.
SJTALL031201	TCF7	SPI1	+/+	-/-	5:134116033	11:47359006	splice-site	splice-site	translocation	downstream	downstream	1	1	0	1081	635	medium	.	.	.	CTAATCCGCCGCCTTCAGGAGACAGAATTGGCCAAG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCG	in-frame	npppsgdrigqGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|VSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGE	.
SJTALL031201	ERP44	MTND2P9(52033),AL353707.1(116247)	-/-	./+	9:100098784	9:80617995	splice-site	intergenic	inversion	upstream	upstream	29	16	4	250	83	high	.	.	duplicates(11)	GGGTGTTCGCCGCTGGAGCCCGGGTCGAGAGGACGAGGTGCCGCTGCCTGGAGAATCCTCCGCTGCCGTCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCAACCTAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGTCACGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTTCTGCTCCTG|GTGCCTGGATAAACAAGAAATTCTGAACACTTTGAGTCTGGAAATTTTCAGAACACCTAGACAGCATCAGTCATAACTCCATACCTGT___GTGAGACTGGAAGACTGGATAGGGCTGAAGTTGGAGAAATGCCTTTTCCCAG___GGTTGTCAGACTGTCATTTGTTCTGATGAAGACCCCGCACTCCTTGAGTGGTCAGCCAGTTTTATCCCAGGGCAGCCACACTTCAGAGGCCTCTGCATCATAAGCTTCATCTATCTTCATATTCAGCAAAACACCAGATAAGTGGCTAATTAGCATAATTAACATCAGAAATGGGTTTTCATTGGTGAATTTAGTGGCTTGTTAATCAGCATAATGAATGTTAGAAATGGGTTCTGAATTGTGAAATTAGAAGAAATCAAGATAG	out-of-frame	MHPAVFLSLPDLRCSLLLL|vpg*	.
SJTALL031201	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	11	17	0	86	66	high	.	.	duplicates(8),low_entropy(5),mismatches(3)	CTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTA...AACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGC	out-of-frame	QLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
SJTALL031201	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	10	10	4	127	250	high	.	.	duplicates(15),low_entropy(4),mismappers(7),mismatches(2)	ACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...CGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCC	.	.	.
SJTALL031201	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	3	7	0	21	27	high	.	.	duplicates(6),low_entropy(2)	GCTAGACTTACTTGGGGGAACTTGTATCTTTAAAATTTTGTAACCCCATGTCTTTGTCTAGTTGAAGTCTAAGTGACCTCCCCCAGGGTTGAGAAAGAAGCTGAAGTTAACGGTTGATATCCTATGTCTTTCCTCAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAG	.	.	.
SJTALL031201	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	4	6	0	65	20	high	.	.	duplicates(5),inconsistently_clipped(1),low_entropy(1),mismappers(5),mismatches(2)	AGATTTTTCTAGATATGACATTTGGTTCGGGAGGGCACACAAAAGCCATTCTGCAGAAGGAGTCAGATATTGTT...GGAACTTTTGATGGAGTTCTTATGGATCTTGGGTGTTCCTCCATGCAACTTGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GGTTTTTATGGAG	out-of-frame	GTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
SJTALL031201	MBOAT2	SLC22A5	-/-	+/+	2:8888018	5:132392433	splice-site	splice-site	translocation	upstream	upstream	1	1	2	96	59	high	.	.	duplicates(2)	GGAGAACATGCACAA___TTACTGCTTTGTGTTTGCTCTGGGATACCTCACAGTGTGCCAAGTTACTCGAGTCTATATCTTTGACTATGGACAATATTCTGCTGATTTTTCAGG___CCCAATGATGATCATTACTCAGAAGATCACTAGTTTGGCTTGCGAAATTCATGATG|ACTTGTATTATTTGGCTACAGTCCTGGTGATGGTGGGCAAGTTTGGAGTCACGGCTGCCTTTTCCATGGTCTACGTGTACACAGCCGAGCTGTATCCCACAGTGGTGAGAAACATGGGTGTGGGAGTCAGCTCCACAGCATCCC	in-frame	ENMHNYCFVFALGYLTVCQVTRVYIFDYGQYSADFSGPMMIITQKITSLACEIHD|dLYYLATVLVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTAS	.
SJTALL031201	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	13	22	1	172	76	medium	.	.	duplicates(13),low_entropy(4),mismappers(1),mismatches(1)	AGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTG	.	.	.
SJTALL031201	ANKRD12	RP11-21J18.1	+/+	+/+	18:9221999	18:9182382	splice-site	splice-site	duplication	downstream	upstream	16	1	0	261	397	medium	.	.	duplicates(5)	GAAGCTTGCAATGTTGGATATTACGATGTTGCTAAGATACTTATAGCAGCTGGAGCAGATGTTAACACACAAGGATTAGATGATGACACTCCACTCCATGATTCTGCTAGTAGTGGGCACAGAGAT___ATAGTAAAGCTGTTACTTCGTCACGGTGGAAATCCATTTCAAGCTAATAAACATGGGGAGCGTCCAGTGGATGTAGCAGAAACAGAGGAGTTGGAGTTGCTACTAAAAAGAGAGGTGCCTTTATCTGATGATGATGAAAGTTACACAG|ATCCAGGATGAGAAGACTGATAAAAGAAGAAGCTAGCTGAACAGCTGTAAAATGCCCAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTGACAGTGACAGCAATATGGTAGAGAAACCATATGGAAGAAAG	out-of-frame	EACNVGYYDVAKILIAAGADVNTQGLDDDTPLHDSASSGHRDIVKLLLRHGGNPFQANKHGERPVDVAETEELELLLKREVPLSDDDESYT|dpg*	.
SJTALL031201	ANKRD12	RP11-21J18.1	+/+	+/+	18:9275667	18:9134186	splice-site	splice-site	duplication	downstream	upstream	1	0	2	166	375	medium	.	.	duplicates(38),small_insert_size(260)	ACTCATTGTATCCAACGAACAAGAAGTTTTGCGAGTTCATTACAGAGCTGCAAGAACATTGGCAAATCAAACACTGCCATTTAGTGCTTGTACTGTTTTGCTGGATGCCGAAGTATACAATGTACCATTGGACTCTCAG|GAGTGGACGCTTCTCTTGTGAGCCAGCTGGAGGTCTTACCTCTTTGACTGAACCACCC	out-of-frame	LIVSNEQEVLRVHYRAARTLANQTLPFSACTVLLDAEVYNVPLDSQ|ewtlll*	.
SJTALL031201	ANKRD12	RP11-21J18.1	+/+	+/+	18:9195698	18:9182382	splice-site	splice-site	duplication	downstream	upstream	1	0	0	568	397	low	.	.	duplicates(1)	GAAATTTTCCTTAGGGGTTTCTATACTGTATTGCTTAGCTAATATTGATATAACTTTACTCTATTTGACTTTTTAATAGAGTAAAGACAAGATTGCATCCTACAGCAAAACTCCAAAAATTGAACG...ATCATCCATGAAACGTAAACTTCCTTTTACTATTAGCCCATCAAGAAATGAAGAACGAGATTCAGACACAG|ATCCAGGATGAGAAGACTGATAAAAGAAGAAGCTAGCTGAACAGCTGTAAAATGC	out-of-frame	SSMKRKLPFTISPSRNEERDSDT|dpg*	.
SJTALL031201	ARL17B	KANSL1	-/-	-/-	17:46352820	17:46094701	splice-site	splice-site	deletion/read-through	upstream	downstream	8	5	0	618	1223	medium	.	.	duplicates(8),low_entropy(3),mismappers(3)	AGGTTTCTGTGTGGAGACAGTAGAATATAAAAATAACACCTTCGCTGTCTGGGATGTTGGCAGCCA...TAAG___GTTTCTGTGTGGAGACAGTAGAATATAAAAATAACACCTTCGCTGTCTGGGATGTTGGCAGCCACTTCAAAATCAGACCTCTGTGGCAGCATTTTTTCCAGAACACAAAAG|GAGACGCAGGTCAGAATGGAAATGGGCTGCAGACCGGGCAGCTATTGTCAGCCGCTGGAACTGGCTTCAGGCTCATGTTTCTGACTTGGAATATCGAATTCGTCAGCAAACAGACATTTACAAACAGATACGTGCTAATAAG___GTT	out-of-frame	*GFCVETVEYKNNTFAVWDVGSHFKIRPLWQHFFQNTK|gdagqngnglqtgqllsaagtgfrlmfltwniefvskqtftnryvlir	.
SJTALL031201	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	4	7	0	504	60	medium	.	.	duplicates(9),low_entropy(3),mismappers(1)	CGGGAGCATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAA___GATCACCATTAACAAGGACACCAAGGTACCCAAtGCCTGCTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAG	in-frame	MNAPPAFESFLLFEGEKITINKDTKVPnACLFTINKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|TGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTI	.
SJTALL031201	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	4	7	0	504	60	medium	.	.	duplicates(9),low_entropy(3),mismappers(1)	CGGGAGCATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAA___GATCACCATTAACAAGGACACCAAGGTACCCAAtGCCTGCTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAG	out-of-frame	MNAPPAFESFLLFEGEKITINKDTKVPnACLFTINKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|tgssdpycivkvdnepiirtatvwktlcpfwgeeyqvhlpptfhavafyvmdedalsrddvigkvcltrdti	.
SJTALL031201	PRRT3-AS1	CRELD1	+/+	+/+	3:9948469	3:9934420	splice-site	splice-site	duplication	downstream	upstream	0	1	1	21	74	medium	.	.	.	TGGAGATAACAGCACCTGCCTCATTGCGTTGTGAAGAAGATGAAATGTTTAGCCCGGTGCCCAACACCCA___GTTCTCACTCTGTCATCCAGGCTGGTGTGCAGTGGTGCAATGTGGGCTTACTGCAG...GGACAAGTGATCTCCCACCTCAGCCTCCGGAATAGCTGGGACTACAG|GTCCCCAGCCTGGGTAAAGATGGCCCCATGGCCCCCGAAGGGCCTAGTCCCAGCTgTGCTCTGGGGCCTCAGCCTCTTCCTCAACCTCCCAGGACCTATCTGGCTCCAGCCCTCTCCACCTCCCCAGTCTTCTCCCCCGCCTCAGCCCCATCCGTG	.	.	.
SJTALL031201	RGS6	RP6-114E22.1	+/+	+/+	14:71964875	14:71908165	splice-site	splice-site	duplication	downstream	upstream	1	1	0	152	89	medium	.	.	.	CTTGATCTTGGACCTCCACCCTCCAGAACT___TGTGAGTGAAGACACTCAGGATGGCTCAAGGATCCGGGGATCAAAGAGCAGTGGGGGTTGCTGACCCAGAGGAGAGTTCTCCAAACATGATCGTTTACTGCAAA|ATAATTGACAATAGGCTCCCATGGAAGTCTTCTGTGCATTTCTGCAAAAATTTAGGAAACATTAGGTTTGACACCATCATCATGTTTGCCAAGGCAGCAAAAATCCCAGCCGGCAAAGCTTCAAGTGTGATGAAGCGGAACAGCAAG	out-of-frame	MAQGSGDQRAVGVADPEESSPNMIVYCK|iidnrlpwkssvhfcknlgnirfdtiimfakaakipagkassvmkrns	.
SJTALL031201	C9orf171	EEF1A1P5	+/.	+/.	9:132569413	9:133019535	intron	exon	deletion	downstream	upstream	0	0	22	1	2599	low	.	.	duplicates(27),low_entropy(69),mismappers(3),mismatches(101)	.	.	.	.
SJTALL031201	USP4	USP4	-/-	-/-	3:49283987	3:49286325	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	7	7	3	274	399	low	.	.	duplicates(2)	CTCAGAAGAAGAAGAAGACCACAGTGGCCCTGAGAGACTGCATCGAGCTCTTCACCACCATGGAGACCCTTGGGGAGCATGACCCCTG___GTACTGTCCCAACTGTAAGAAGCATCAACAGGCCACAAAAAAGTTTGACCTATGGTCCTTGCCCAAGATCCTGGTGGTCCACCTCAAACGTTTCTCCTACAACAGATACTGGAGGGATAAGCTCGACACAGTCGTAGAATTCCCAATCAG|GAGAAGATGAGGAAGAAATGGAGCATCAGGAAGAAGGCAAAGAGCAGCTTTCAGAAACAGAAGGCAGTGGGGAAGATGAGCCAGGAAATGACCCCAGTGAGACCACCCAAAAGAAGATCAAAGGCCAGCCCTGCCCAAAAAGGCTTTTTACCTTCAGTCTTGTGAACTCCTATGGAACAGCTGACATAAATTCACTTGCAGCTGATGGAAAACTACTTAAACTCAAC	out-of-frame	QKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIr|rr*	.
SJTALL031201	SMIM11	CH507-513H4.1	+/.	+/.	21:7769059	21:8207495	intron	intron	deletion	downstream	upstream	0	0	14	1	935	low	.	.	duplicates(8),low_entropy(36),mismappers(6),mismatches(76)	.	.	.	.
SJTALL031201	CH507-254M2.2	CH507-513H4.1	+/.	+/.	21:7465817	21:8214252	intron	intron	deletion	downstream	upstream	0	0	13	0	13105	low	.	.	duplicates(14),low_entropy(4),mismappers(2),mismatches(58)	.	.	.	.
SJTALL031201	RNU1-28P	EGLN3	-/-	-/-	14:34556250	14:34408555	exon	intron	deletion/read-through	upstream	downstream	0	0	12	304	2	low	.	.	duplicates(10),low_entropy(6),mismappers(3),mismatches(19)	AGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAAATGTGGGAAACTCGACTGCATAATTTGTGGTAGTGGG...|...ATAGGTGCATGCCACCATGCC	.	.	.
SJTALL031201	FAM126A	EEF1A1P6	-/-	-/-	7:22890571	7:22511993	intron	exon	deletion/read-through	upstream	downstream	0	0	10	1	340	low	.	.	duplicates(1),low_entropy(11),mismappers(4),mismatches(31)	CAGAAAAAATGTTT...|...AAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCgGGCAAGTCCACCACTACTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGaGACTTtATCAAAAACATGATTACAG	.	.	.
SJTALL031201	RNU1-1	HYDIN2	+/+	+/+	1:146376938	1:146868755	exon	intron	deletion	downstream	upstream	0	0	10	1875	3	low	.	.	duplicates(2),mismappers(2),mismatches(1)	GGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAAATGTGGGAAACTCGACTGCATAATTTGTG...|...AAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAAGAGCTAACTcTCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCctAGTGACCTACAAAGAG	.	.	.
SJTALL031201	RNU1-1	NBPF12	+/+	+/+	1:146376945	1:146949762	exon	intron	deletion	downstream	upstream	0	0	9	1858	74	low	.	.	duplicates(5)	GGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAAATGTGGGAAACTCGACTGCATAATTTGTGGTAGTGG...|...GGCCCTTTTTCTGTGCTGGCTGTCAGCgGGGAGACAgTCTACTCTGACTCCAGAGGCCACGTGCTTTCCTCCTTACCTGTCTGTTTCATCTTTCAACCAATAACAAC	.	.	.
SJTALL031201	CMIP	PLCG2	+/+	+/+	16:81558226	16:81880192	intron	intron	deletion/read-through	downstream	upstream	0	0	8	43	21	low	.	.	duplicates(2),low_entropy(4),mismappers(2),mismatches(27)	CAGAATTTCTTTCTCTTTTATGGCAATATTCCATTGaCTGTGTATGCTGCAaCATGCTTCTCCATCCGTCCGTCCATCAGAGGACACGAGGTTGCTTCCACCTCTCGGCC...|...GGTCGTGCCACTGCACTCCAGCCTG...CAAAGCCAATGTGCCTACAATGTGCTGTGTCTACGCGCTTTTCCTTaTAGGACTCTACTCcGTAGAAAAACTGGCACAAGTGGGCAAAGATAGAGAAATAGGCACACAGGGAC	.	.	.
SJTALL031201	SORCS2	SH3TC1	+/+	+/+	4:7697834	4:8216170	intron	CDS	deletion	downstream	upstream	0	0	8	0	1316	low	.	.	duplicates(2),low_entropy(9),mismappers(4),mismatches(19)	AGGGCCCGAGA...|...CCCAGTGAGGAGGAGGAGACGGCCATCCAAGTCCATGTGGATGAGAACGCCTTAAGGCTGACCCACGAGAGCCTCCTCATCCAAGAAG___GGCCCTTCTTTGTCCTGTGTCCTGACCACCATGTGAG	.	.	.
SJTALL031201	ADARB2	LARP4B	-/-	-/-	10:1202986	10:863850	intron	CDS	deletion/read-through	upstream	downstream	0	0	8	0	396	low	.	.	duplicates(1),low_entropy(10),mismappers(2),mismatches(14)	GCCAGGCAAAGA...|...ATGAGAATGCCGCATTGCCAGACCCGCAGGAGTCGGACCCAGCAGACATGAACGCTCTCGCTCTGGGTCCCTCAGAATATGACTCTCTGCCTGAAAATAGCGAGACAG___GAGGAAATGAGTCTCAACC	.	.	.
SJTALL031201	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511621	7:23325984	exon	intron	deletion	downstream	upstream	0	0	8	12588	12	low	.	.	duplicates(4),low_entropy(10),mismatches(39)	.	.	.	.
SJTALL031201	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	6	0	103	17	low	.	.	.	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCC	.	.	.
SJTALL031201	PACRG	QKI	+/+	+/+	6:163257160	6:163418784	intron	intron	deletion/read-through	downstream	upstream	0	0	6	0	62	low	.	.	duplicates(2),low_entropy(50),mismappers(6),mismatches(30)	AACCCTATTT...|...AACAGTAGTTGAATGCAAATTGTTATAATAAAGTTTTGTAATTTAGAATCGAGAAGGTGAAGAGTACGGTCTATTAGACTTAACAATCCTGTATTAGGGGAAAATGGAG	.	.	.
SJTALL031201	MYO15A	SNORD3B-1	+/.	+/.	17:18154846	17:19062000	intron	exon	deletion	downstream	upstream	0	0	6	1	2340	low	.	.	duplicates(21),low_entropy(1),mismatches(9)	.	.	.	.
SJTALL031201	FKBP4	RP11-885B4.1	+/-	-/-	12:2796233	12:2771907	exon	exon	deletion/read-through/3'-3'	upstream	downstream	1	4	1	56	32	low	.	.	duplicates(2),low_entropy(1)	CAATCTCTGCCTCTTCCTCCTTTAACCTTACAGAGGAGGCGGGTCTTCCGGGCTTGGAGGCGGGCTTCCCAACTCTGAT___GTGCAGCAAGACTTGGTTTGAAAAAGGAGACAAAAGGCTGAGAGATCTGAGTTCAAGTTTCCGCTGTATG___AAAACGGCAGGACGCTGGAGCGAGAAGGGGAAGTCACATGCCACAGGAGAGCCGCTGGAGCAGACGCTTGAGGTCCCCAATAATCTGGTGCAAAGACAGATGCACTTCTGGACCAG|AATGAAGAAGATACCCAGCAGATGTGTGCCAAGATTCTACAAATGGTACATACAGGTAGGGCCAAAGAGGCCTCTCCATTTCCTCCTC...___GTCGGGGTCTCTTCTGAGACGTGACTCAGTGGAGCGAAAGACGGGCATTGAAG___GTGTCCCTGCCGGTACTCATAAACCTTCTATGCCAACCAAGCCACATCTCGGCCTTCGTGGTCCTCAGCAAGGCAGCCAGGAAGGTGGCTCTGCAGGCCCACTCCCTGGGGCCGCACCCTTACC	.	.	.
SJTALL031201	RNU1-27P	KIAA0391	+/+	+/+	14:34546854	14:35152169	exon	intron	deletion	downstream	upstream	0	0	6	2466	17	low	.	.	duplicates(2),mismappers(1),mismatches(6)	AGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAAATGTGGGAAACTCGACTGCATAATTTGTGGTAGTGGGG...|...CAAAGCACATCTTGCACCGCCCTTAATCCATTtAACCCTGAGTGGACACAGCACATGTTTCAGAGAGCACcaGGTTGGGGgTAAGGTCATAGATCAACAGCATCCCAAGGCAGAAGAATTTTTCTT	.	.	.
SJTALL031201	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	1	74	128	low	.	.	low_entropy(1)	GGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCAC?AGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGAC	.	.	.
SJTALL031201	SNORD3B-2	GRAPL	+/+	+/+	17:19062126	17:19128015	splice-site	intron	deletion/read-through	downstream	upstream	4	0	1	2110	35	low	.	.	duplicates(160),low_entropy(15),mismatches(122)	CCGAAAAAAAAAA...GGGGGACATGG...AGGGGGTGTT...CGGGGGTGAG...CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCaCGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTCTGGCGTTGCTTGGCTGCAACTGCCGTCAGCCATTGATGATCGTTCTT?TCTCCGTATTGGGGAGTGAGAGGGAGAGAACGCGGTCTGAGTG|AGAGGGAGAGAAcG?GA...AAAAaAAagAaAAAAaagAAgAAAgAaAAAAAAGAAAAAAAAGA	.	.	.
SJTALL031201	PRPSAP2	SNORD3B-1	+/+	+/+	17:18926636	17:19062000	intron	exon	deletion/read-through	downstream	upstream	0	0	5	7	2340	low	.	.	duplicates(3),low_entropy(3),mismappers(3),mismatches(36)	AGGGGGCAAT...|...AGGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTCTGGCGTTGCTTGGCTGCAACTGCCGTCAGCCATTGATGATCGTTCTTCTCTCCGTATTGGGGAGTGAGAGGGAGAGAACGCGGTCTGAGTGGTTTTTCCTTCTTGATGGCTCAATGACAGAG	.	.	.
SJTALL031201	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	66	256	low	.	.	duplicates(2),low_entropy(3)	CGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCG...TGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
SJTALL031201	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	26	256	low	.	.	duplicates(3),read_through(18)	CATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___...G___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGG...AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCG	in-frame	FWRPEI*EQDVSWATPPSEGSKGESLLSSSSCWWLQ|SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSED	.
SJTALL031201	CELF4	TPGS2	-/-	-/-	18:37254463	18:36828779	intron	5'UTR	deletion	upstream	downstream	0	0	4	0	154	low	.	.	low_entropy(1),mismappers(1),mismatches(7)	GGTGGCGAG...|...CGGTCGCGAGCCATGGAGGAGGAGGCATCGTCCCCGGGGCTGGGCTGCAGCAAGCCGCACCTGGAGAAGCTGACCCTGGGCATCACGCGCATCCTAG___AATCTTCCCCAGGTGTGACTGAGGTGAC	.	.	.
SJTALL031201	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	1	48	22	low	.	.	duplicates(3)	GTCAGATCCCACAGG___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGAC	.	.	.
SJTALL031201	SMAD2	ZBTB7C	-/.	-/.	18:47917770	18:48170871	intron	intron	deletion/read-through	downstream	upstream	0	0	4	53	1	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(5)	.	.	.	.
SJTALL031201	NLRP1	PFN1	-/-	-/-	17:5499644	17:4948294	3'UTR	CDS	deletion	upstream	downstream	0	0	4	54	4824	low	.	.	low_entropy(1),mismappers(3),mismatches(5)	CAGACCCCG...CGGGAAAACC...|...CCGatCCCGGGAAAACGTTCGTCAACATCACG___CCAGCTGAGGTGGGTGTCCTGGTTGGCAAAGACCGGTCAAGTTTTTACGTGAATGGGCTGACACTTGGGGGCCAGAAATGTTCGGTGATCCGGG	.	.	.
SJTALL031201	EEF1A1P13	ANKH	-/-	-/-	5:14652815	5:14717986	exon	intron	deletion/read-through	downstream	upstream	0	0	4	2558	0	low	.	.	low_entropy(1),mismappers(1),mismatches(18)	...TTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTAcTGTTCCTGTTGGCCGAGTGGAGAC|...TGTTCGGGCT	.	.	.
SJTALL031201	PTPRM	MTCL1	+/+	+/+	18:8325720	18:8718632	intron	CDS	deletion/read-through	downstream	upstream	0	0	4	0	12	low	.	.	duplicates(1),low_entropy(6),mismappers(2),mismatches(18)	GGGTCAAGTGG...|...TGGAGCAGGACTTGAAG___GTAGCCAAAGATGTATCTGTCAGATTGCACCACGAACTTAAGACGGTGGAGGAAAAGCGCGCTAAAGCTGAGGATGAAAACGAAACTCTCCGACAGCAGATGATTGAAG	.	.	.
SJTALL031201	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	2	0	1	169	57	low	.	.	duplicates(3),low_entropy(1),mismatches(2)	ATTATTCCTGTTTTGCCACTGTATTTTTGGTGAATGTGTAGTAAGTAACTGGCCTCTTTAGTATCACAAAGCTGGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___GGACTCTGAGATCATGCAAGAAAAGCAGAAG	.	.	.
SJTALL031201	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	48	22	low	.	.	duplicates(2),mismappers(1)	GTCAGATCCCACAGG___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGAC	.	.	.
SJTALL031201	PDE4DIP	HIST2H3A	+/+	+/+	1:149032099	1:149852895	3'UTR	CDS	deletion	downstream	upstream	0	0	3	6	444	low	.	.	low_entropy(1),mismatches(3)	GGAGCATCTG...|...ACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGGCTGTTCGAAGACACGAACCTGTGCGCCATCCACGCCAAGCGCGTGACCATTATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGTGGAGAGCGGGCTTAAGAAGTGGCGGTTCGGCCGGAGGTTCCATCGTATCCAAAAGGC	.	.	.
SJTALL031201	ATP8A2	CDK8	+/.	+/.	13:25907590	13:26281481	intron	intron	deletion/read-through	downstream	upstream	0	0	3	1	29	low	.	.	low_entropy(2),mismappers(2),mismatches(6)	.	.	.	.
SJTALL031201	STK11	DAZAP1	+/+	+/+	19:1209967	19:1414121	intron	intron	deletion/read-through	downstream	upstream	0	0	3	12	18	low	.	.	mismappers(1)	GGGGTTGGCA...GATGCACCCTCAC...|...TACACCTCGAGCTCAGCCTCCCGAGTGGaTAGGATTACAGGTGCGCACCACCGAGCCCAGCTAATTTTTGTATTTTTAGTAGAGtTGGtGTTTTGCCATGTTGGCCAGGCTGGTCTCGAgCTCCT	.	.	.
SJTALL031201	CEPT1	RAP1A	+/+	+/+	1:111184175	1:111543256	intron	intron	deletion/read-through	downstream	upstream	0	0	3	72	0	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(1)	GAAGGAAAGATTGCAAGGAAATTGAATTATTTTATGGAATGGAAGGTGAATCTGTAGAGAGAACAGAGTCCAGTCCTCTTTACTTTCAGGAAGCTTAGGGAGAGCCTAAACGGGTGCTGAGAATGT...|...TGTTTCTGTGTGT	.	.	.
SJTALL031201	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	0	0	1778	78	low	.	.	duplicates(2),low_entropy(1),mismappers(1)	TGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCA	.	.	.
SJTALL031201	BCO1	PLCG2	+/+	+/+	16:81262353	16:81962011	3'UTR	3'UTR	deletion	downstream	upstream	0	0	3	0	897	low	.	.	low_entropy(1),mismappers(2),mismatches(1)	GGCCGGGGTGA...|...TCCCCTTCCTcCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCgGTCGAAGAGGACGACCAtCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCT	.	.	.
SJTALL031201	ATP9B	CTDP1	+/+	+/+	18:79304677	18:79695603	intron	intron	deletion/read-through	downstream	upstream	0	0	3	29	12	low	.	.	low_entropy(2),mismappers(2),mismatches(6)	AGCCTCATTCC...|...CCCCTCCCTCTGGGCCGCTGAGCGCCCCATGCTGGGGGCTGCTTTACCTCTAATGCCAAGTGGGAGGTGCGGCAGCTACTTTTTCTGCGTTTTCATGGTTGAGGGCCTGTTTCTGCTTCTGTGTG	.	.	.
SJTALL031201	HECW1	DBNL	+/+	+/+	7:43389262	7:44053478	intron	intron	deletion	downstream	upstream	0	0	3	1	21	low	.	.	duplicates(2),low_entropy(4),mismappers(1),mismatches(6)	GCCAGCGTCAGCG...|...ATTTCTCGTTCTGCCAACATTTCTTCAGCTATACCTCAGTTTCCATCTAGGAGCTGATAAGAGAATTCCCAGCTTATCGATATACAGGTTTGAGTATCCTTTATCTGAAATGCTTAGGACCAGA	.	.	.
SJTALL031201	NPIPA3	PDXDC1	+/+	+/+	16:14898741	16:14978242	intron	intron	deletion/read-through	downstream	upstream	0	0	3	1	45	low	.	.	low_entropy(1),mismappers(2),mismatches(5)	AGGGGTTTGA...|...ATGTCCAAGGCATAAGGAACAAGGCCCTGTAGCAGAGTCTCACAGTGTGTACTTATGTTAATATTCAATAAGGAAAATGCCACAGGAAGTAATCACTATAATGATGAAGATTTTAAGTTATTAAAC	.	.	.
SJTALL031201	NPIPA1	PDXDC1	+/+	+/+	16:14898741	16:14978242	intron	intron	deletion/read-through	downstream	upstream	0	0	3	1	45	low	.	.	low_entropy(1),mismappers(2),mismatches(4)	AGGGGTTTGA...|...ATGTCCAAGGCATAAGGAACAAGGCCCTGTAGCAGAGTCTCACAGTGTGTACTTATGTTAATATTCAATAAGGAAAATGCCACAGGAAGTAATCACTATAATGATGAAGATTTTAAGTTATTAAAC	.	.	.
SJTALL031201	FOXP2	MDFIC	+/.	+/.	7:114324735	7:114932978	intron	intron	deletion	downstream	upstream	0	0	3	18	18	low	.	.	duplicates(2),low_entropy(3),mismappers(3),mismatches(5)	.	.	.	.
SJTALL031201	ITFG1	VPS35	-/-	-/-	16:47180236	16:46687160	intron	intron	deletion	upstream	downstream	0	0	3	14	26	low	.	.	mismappers(3),mismatches(4)	CGTAATCACT...|...TAAGCAGGGAGGTTGAACCACAATAGGTTTCTAACATAAGTGGAGATAATTATTTGTATCTAAACTGAATAATAATTATAGCACTTATTAAGTGCTTATTGCTAAGTAGTAG	.	.	.
SJTALL031201	AC024084.1	MTPN(3598),AC024084.1(44810)	+/+	./+	7:136031033	7:135980951	splice-site	intergenic	duplication	downstream	upstream	0	1	2	303	314	low	.	.	.	GCCTGACCAGACTGACTGCCATCCTGTTAAAG___GAATGAATCACAGTTCATCTCGCAGATTTATGGCATGCCTACAGAAAAAGTACCTTATGATGCAAACCTGAAAGTTTAAATAATCTCCTGAAAGTTCCACAATCAG|AAAGTGATGAATCAGAGGCTGAAGTGAAGTTACAAAGTTATACTCCTATGCAAAGGAAGA...CCTGATTGACTGCAGGAGGGGACCAGTCAGAG___TGCAGCATTGAAACAGAGTTACTGTGAATACAGAAGACTGTCTATCCCACAGCAGGCAATGCAATTAAAGACTTCAGAGAATGCCAGATTTTTC	.	.	.
SJTALL031201	SORCS2	AFAP1-AS1	+/.	+/.	4:7367734	4:7765876	intron	intron	deletion/read-through	downstream	upstream	0	0	2	0	10	low	.	.	mismappers(1)	.	.	.	.
SJTALL031201	CTB-113I20.1(17107),TCF7(15564)	VDAC1	./-	-/-	5:134099147	5:133993018	intergenic	splice-site	deletion/read-through	upstream	downstream	1	1	0	328	336	low	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(1)	GCCAGACCCAACCAGATGCTGGCTTTTTTTGAcGGCCTAAATCACAGTCCACCCAAAGCCCTACTTTTAAGAGTCTGTGCTCGACCTGAAGCACACAGGCTGTGAGCTG|CAGAAGATGGCTGTGCCACCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAGGGCTATG___GATTTGGCTTAATAAAGCTTGATTTGAAAACAAAATCTGAGAATGGATTG___GAATTTACAAGCTCAGGCTCAGCCAACACTGAG	.	.	.
SJTALL031201	SDK1	FOXK1	+/+	+/+	7:4217435	7:4689185	intron	intron	deletion	downstream	upstream	0	0	2	0	25	low	.	.	low_entropy(3),mismappers(2),mismatches(12)	CAGGCCACTC...|...CCAGGCCAGTCTTGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCCCAGAGTGCCGGGATTGCAGATGTGAGCCACTGCACCCGGCCACCGGTACTTTTTTGTGGTTCATTTTGGCTGCC	.	.	.
SJTALL031201	TTLL3	ATP2B2	+/+	-/+	3:9847992	3:10539112	intron	intron	deletion/5'-5'	downstream	upstream	0	0	2	1	1	low	.	.	low_entropy(1),mismappers(1)	GTAAAGAATTAAGTGCTGTGCTTTAGATATGCATACACATAAA...|...CCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGAAATCCAACttACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAA	.	.	.
SJTALL031201	AC079250.1	AC079807.4	-/.	-/.	2:47691160	2:48132392	exon	intron	deletion	downstream	upstream	0	0	2	20	2	low	.	.	mismappers(1),mismatches(4)	.	.	.	.
SJTALL031201	HYDIN2	NBPF12	+/+	+/+	1:146827573	1:146963196	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	0	181	low	.	.	low_entropy(12),mismappers(2),mismatches(11)	AGGGAACAGAG...|...TCCAGGCCCTCCTCACTCCGGATGAGCCGGACAAGTCCCAGGGGCAGGACCTCCAAGAACAGCTGGCTGAGGGGTGTAGACTGGCACAGCAACTTGTCCAAAAGCTCAGCCCAG___AAAATGATGAAG	.	.	.
SJTALL031201	RNU7-6P(133759),ZFP64(12874)	ZFP64	./.	-/.	20:52038789	20:52067764	intergenic	intron	deletion/read-through	downstream	upstream	0	0	2	2	5	low	.	.	mismappers(1),mismatches(2)	.	.	.	.
SJTALL031201	MYRIP	RP11-761N21.2	+/.	+/.	3:39996281	3:40761550	intron	exon	deletion	downstream	upstream	0	0	2	1	46	low	.	.	mismappers(1),mismatches(2)	.	.	.	.
SJTALL031201	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	0	1	504	60	low	.	.	.	AACGCCATCACCGACCTCATCAGcGAGCTGTCCCTGCTGGAGGAGCGCTTCCGG___...CTCCAACATGGCCAGACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCT	.	.	.
SJTALL031201	SP3	TRA2B	-/-	-/-	2:173954873	3:185931852	splice-site	splice-site	translocation	upstream	downstream	0	1	1	954	1053	low	.	.	duplicates(1)	GTGAACTCTATAGATTCTGCTGGTATACAGCTACATCCAGGAGAGAATGCTGACAGTCCTGCAG|GTTAATGTTGAAGAAGGAAAATGCGGAAGTCGTCATTTGACAAGTTTTATAAATGAGTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAATAAAAGAAAGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGAAATAAAAATGAAGTTAAGATAAGAAGTAATCTGGAATCAGAAAGCACTACGCTAAGTAATTACTAGTCTGTTTATGTGTC	out-of-frame	VNSIDSAGIQLHPGENADSPA|g*	.
SJTALL031201	CLEC12A	DDX17	+/+	-/-	12:9982129	22:38494131	splice-site	splice-site	translocation	downstream	downstream	1	0	1	791	2333	low	.	.	duplicates(2)	CAAATGTAAGCCTTGTCCAAGGAGATGGATTTGGCATAAGGACAGCTGTTATTTCCTAAGTGATGATGTCCAAACATGGCAGGAGAGTAAAATGGCCTGTGCTGCTCAGAATGCCAGCCTGTTGAA...CCACTCGTGGTATGAGAGTGGATAATATAATCAACTCCTCTGCCTG|GTTGATCCAACTAATGGAAGAAATAATGGCTGAAAAGGAAAACAAAACAATAATATTTGTGGAGACAAAGAGACGCTGTG	out-of-frame	TRGMRVDNIINSSAw|liqlmeeimaekenktiifvetkrrc	.
TALL_VC001	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	7	0	140	46	medium	.	.	duplicates(21),mismatches(1)	GCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACG...GCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGC	.	.	.
TALL_VC001	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	29	59	low	.	.	duplicates(7),low_entropy(2),mismappers(1)	GGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATT[tt]TTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTtTTTTtTTGTTTTGGACATTTTTGAG...TGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCccGCC	.	.	.
TALL_VC001	DUSP16	SELT	-/-	+/+	12:12476977	3:150627753	CDS	3'UTR	translocation	upstream	upstream	0	3	0	27	150	low	.	.	duplicates(1)	GCGGAGACCAAGTCTATTCTGTGCGCAGGCGGCAGAAGCCAAGTGACAGAGCTGACTCGCGGCGGAGCTGGCATGAAGAGAGCCCC|GCAGGCTCGTTGTACCTCTTGGAAAACCTCAATGCA...TCAGTGCTGGCATATTTTGGAATTCTGCACATTCATGGAGTGCAATAATACTGTATAGCTTTCCCCACCTCCCACAAAATCACCCAGTTAATGTGTGTGTGTGTTTTTTTTTTAAGGTAAACAT	out-of-frame	GDQVYSVRRRQKPSDRADSRRSWHEESP|agslyllenln	.
TALL_VC001	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	2	0	21	14	low	.	.	duplicates(8)	GGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCC	.	.	.
TALL_VC001	EEF1A1P6	DNAH11	-/-	+/-	7:22511227	7:21797373	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	127	0	low	.	.	mismatches(3)	ACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGT...|...GTGGCGCAGG	.	.	.
TALL_VC001	CD82	TSPAN18	+/+	+/+	11:44619147	11:44828795	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	3	2623	0	low	.	.	low_entropy(1),mismatches(1)	GCGTGGCTGCAGGAGAACCTGGGCATCATCCTCGGCGTGGGCGTGGGTGTGGCCATCATCGAG___CTCCTGGGGATGGTCCTGTCCATCTGCTTGTGCCGGCACGTCCATTCCGAAGACTACAGCAAGGTCCCCAAGTACTGAGGCAGCTGCTATCCCCATCTC...|...TCCCCCTGCT	.	.	.
TALL_VC001	PSMD1	PTMA	+/+	+/+	2:231126375	2:231711949	intron	CDS	deletion	downstream	upstream	0	0	3	0	10418	low	.	.	.	GGGGAGGTCGAGG...|...TGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATG___GTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAcTCAGCTtCGGGCAAGCGGGCAGCTGAAGATGAgGAGG	.	.	.
TALL_VC001	OXSR1	ACVR2B	+/+	+/+	3:38255074	3:38466852	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	379	0	low	.	.	low_entropy(1)	GCCCTGCTAGGAATTAGAAGACAGACACCATGTCCCAGGACAGTGTTACTTCTTCTGCATGATGTGTGGTAGACTCCCTTTGCTGGCTTGTGCAGTGATACTGAGAAAATACATGAACAGAAACTG...|...GGCAGAAGGAAAA	.	.	.
TALL_VC001	PTPN1	BCAS4	+/+	+/+	20:50574573	20:50820311	CDS	intron	deletion/read-through	downstream	upstream	0	0	2	24	0	low	.	.	duplicates(2)	GCAGGGGTGTCGTCATGCTCAACAGAGTGATGGAGAAAGGTTCG___TTAAAATGCGCACAATACTGGCCACAAAAAGAAGAAAAAGAGATGATCTTTGAAGAC...|...GGTGTGAAGGG	.	.	.
TALL_VC001	RP11-284N8.3	TRERF1	-/.	-/.	1:110653980	6:42239599	exon	intron	translocation	downstream	upstream	0	0	2	7	0	low	.	.	.	.	.	.	.
TALL_VC001	HEATR1	EDARADD(21107),LGALS8(11979)	-/-	./-	1:236577308	1:236506021	intron	intergenic	deletion/read-through	upstream	downstream	0	0	2	8	1	low	.	.	.	CCcGTCTCTACTAACAATACCAAAATTAGCCAGGC...|...CCCGTCTCTACTAAAAATACAAAAATTAGCCAGGC	.	.	.
TALL_VC001	MAN2A1	VWA1	+/+	+/+	5:109868433	1:1437361	exon	CDS	translocation	downstream	upstream	0	0	2	12	119	low	.	.	.	GTTCTGAGCCCaTGTGCCATTACAGTGCTTTTAATAAAATTTATTTGGGATTATTGTTTCCTTAACATTAAAATAATAGCGACATTTAGACTATtCAATTTTAGCATAGAAAGGAGTCTTTG...|...ACCGGCCGAGGCAACTTCCTGGAGCTGTCAGCCGCTGCCTCAGCCCCTGCCGAGAAGCACCTGCACTTTGTGGACGTGGATGACCTGCACATCATTGTCCAAGAGCTGAGGGGCTCCATTCTCG___AC	.	.	.
TALL_VC001	TMEM14B	SLC7A7	+/+	-/-	6:10790291	14:22776273	intron	CDS	translocation	downstream	downstream	0	0	2	5	12	low	.	.	duplicates(2)	TGAGTGGGCTTTTCCTCCAGTTCATGTATTTTTAGGAAAGAGTACCTATGGAATGTGAAGACCTGGAAACGGATTGCATAAGAGTTATCCAAGCAAAAAAAGAATTATCCAAGCATATGTACTCCT...|...CATCTATATCTTGACCAATGTGGCCTATTATACTGTGCTAGACATGAGAGACATCTTGGCCAGTGATGCTGTTGCTGTG___ACTTTTGCAGATCAGATATTTGGAATATTTAACTGGATAATTCCACT	.	.	.
TALL_VC001	CSNK1D	ITSN1	-/-	+/+	17:82243553	21:33848340	3'UTR	intron	translocation	upstream	upstream	2	0	0	273	0	low	.	.	duplicates(1)	CGGCAGGCCAGAAGGACCCACCCTGAGGTGCCAAGGAGCAGGTGACTCTCCCAACCGGACCCAGAACCTTCACGGCCAGAAAGTAGAGTCTGCGCTGTGACCTTCTGTTGGGCGC|CgGCCGAGGAGAGAGGCCTCAGGAGGAACCAGCCCTGTTGTCACCTTGATCTTGGACTTTGTATCTTTAGAACCATGAGGAAGTATATGTTGTTTAAGCG	.	.	.
TALL_VC001	CPB2	TPT1	-/-	-/-	13:46056820	13:45340142	intron	CDS	deletion	upstream	downstream	0	0	2	1	34587	low	.	.	mismappers(1),mismatches(1)	GGGGGGAAAAACT...|...GGTGGAAATGCCTCCGCTGAAGGCCCCGAGGGCGAAGGTACCGAAAGCAC	.	.	.
TALL_VC001	FURIN	HMBS	+/+	+/+	15:90883080	11:119093308	3'UTR	3'UTR	translocation	downstream	upstream	0	2	0	389	75	low	.	.	duplicates(2)	GCCGGGGGTTCATAGGTCACTGGCTCTCCAAGTGCCAGAGGTaGGCgGG|GGGTTGCTGCTGTCCAGTGCCTACATCCCGGGCCTCAGTGCCCCATTCTCACTGCTATCTGGGGAGTGATTACCCCGGGAGACTGAACTGCAGGGTTCAAGCCTTCCAGGGATTTGCCTCACCTTGGGGCC	.	.	.
TALL_VC003	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	73	12	2	354	345	high	.	.	duplicates(15),low_entropy(15),mismappers(75),mismatches(14)	AAG___...G??GGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCCTGCCCTTTACATTTTAACTCCCTTC??C...TCTCTTCAATTT	.	.	.
TALL_VC003	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	20	20	5	458	345	high	.	.	duplicates(3),mismappers(4),mismatches(5)	G??GATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTAaGGAGAgATTCCgCCAGAGATG??G	.	.	.
TALL_VC003	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	15	16	5	310	345	high	.	.	duplicates(1),low_entropy(3),mismappers(4),mismatches(11)	GGCAAATCATGCTACATGCAATTTTTCCAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGtAAAgTCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATT??G	.	.	.
TALL_VC003	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	12	2	4	637	345	medium	.	.	duplicates(2),mismappers(3),mismatches(3)	GGATTCGGCCAgTCCTGGCAgGgCGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCtAAACAGTGAC	.	.	.
TALL_VC003	AC013463.2	SCN2A	+/+	+/+	2:165091299	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	5	3	1	643	345	low	.	.	duplicates(1),low_entropy(3),mismatches(1)	ATTTGGAACAAGCAGATCATGCTGTTGCCAAAGGTCTCAAAGTTGAACATGTCATCAATTCCAGCTTCCTTTTTAACATAGGCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCAT	.	.	.
TALL_VC003	GFRA4	ATRN	-/-	+/-	20:3663354	20:3647187	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	7	22	0	246	131	high	.	.	duplicates(5),low_entropy(19),mismatches(1)	CCCAGGGGTATCAGCGCAGACAGCTGGGTTTTCACTGTGCTCCTGCTCCAGAGGCACTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|TTGAGACAGTCCCAAGAACAGTTTTCCACAGTGAACCTGAGTGTCATTCCTAGTTCTCTCACTGGCTCTACACTGGCCTCCTCCAGCAACCATCAGCTCATCCCTGGACCTGTAATTAAATCAAGTATTTCCTATGCAAAAGTAAAAGGTTAGATGCTGGAACACGGATGGGAGAAACCGTCAAAGAAAGCTTGTGATCATGCAG___GGACACGGATGAAGCTGGAAGCCATCAGTCTCAGCAAACCAACACAGGAACAGAAAACCAAATACTCCATGTCCTCACTCTTAAGTGGGAGTTGAACCATGAG	out-of-frame	MVRCLGPALLLLLLL|vetvprtvfhsepechs*	.
TALL_VC003	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	9	17	2	80	69	high	.	.	.	G??AAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAGGTCTGTGTGATAAAAGAAGAGCCTTGGGGAAATGTTCT...___GCAATTTATAGCACTGATCT??C	out-of-frame	?KYVDTPFGKPSDALILGKIKNVDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichdiskdskreywcpccddssapli*	.
TALL_VC003	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	5	4	4	80	61	medium	.	.	low_entropy(2)	G??GAAGATAAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___GACTATTTGCCACGACATTTCAAAGGATTCC?AG...___TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTC...GCCTCAGCCTCCCAAGGAGCTGGGATTGCAGGCACCTGCCACCACGCCCAGCTAATTTTTGTAGTTTTGGTAGAGATGGTGTTTCACCATTTTGGCCAGGCTGGTCTTAAACTCCTGACCT??T	out-of-frame	?KIKNVDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL_VC003	MON1B	CTD-2300H10.2(65533),MON1B(20005)	+/+	./+	16:77191633	16:77170830	splice-site	intergenic	duplication	downstream	upstream	7	19	1	141	58	high	.	.	mismatches(1)	ATtCGGCCAATTGAGATTCGGAGTTAAAACAG___GGATGTGCAGATGGAGGTCGGAGGAGACACTGCTGCCCCGGCCCCCGGGGGCGCGGAGGACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGAAGGTGGAGGGGTTCACGCGGTCCCGCCGGATCCCGAAGACGAGGGCCTGGAGGAAACAG|GGATGCTGAGCTGCTGCAGGAAGCTCTTGAACATCAAGTTATGCCAGCAGAAAAAGACATCAGATTGGAAGAATGTGGGTGATGTTTTGCC...___GCAGATGAGCTGGTCTCAGAAATACTCAAGTCTCAAAATCTTTGGAACATATGCTTCCATATCAG___CAATTTTCAAGTTTGCCATACTTCTACCCAAAGATTCCACTGGCTTCCTGCCACCATCCTTCAGTCTAAAACTGTATCATGCTGTTCCTGGCATTCTTTGATCAGGGCCTATGAG...___GGAAACAGATCTGGAGACCTGTG	out-of-frame	MEVGGDTAAPAPGGAEDLEDTQFPSEEAREGGGVHAVPPDPEDEGLEET|gmlsccrkllniklcqqkktsdwknvgdvl	.
TALL_VC003	ITPR2	ITPR2(47788),ASUN(24195)	-/-	./-	12:26790157	12:26880986	splice-site	intergenic	duplication	upstream	downstream	5	9	1	232	246	high	.	.	duplicates(3),mismappers(7)	AGAAGAGGGACGTCCACTGTGGAACATGAAGCAGCATGACTGAGAAAATGTCCAGCTTCCTCTACATAGGGGACATCGTGTCCCTGTACGCGGAGGGCTCGGTCAACGGCTTCATCAGCACCTTGGG___GTTAGTGGATGACAGATGTGTGGTGCACCCAGAGGCCGGGGACCTTGCCAACCCTCCCAAGAAGTTCAGAG|GGACAATGAAGCCTGGTGTAGTGAGAGTTCCTGGAGCAAACCAACAAAATGAGGCACACTCCATGCTCTGCTTCTGCTGCCTGGAGCCCACATTGACCCAAGATTTCTTCCAGCTTAAAAATGCTACCATTTTAAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAGGATGAGTTGATGTCCTTTGCAGGGACATGGATGAAGCTGGAAACCATCATCTGCAGCAAACTAACACAGGAACAGAAAACCCAGCACTGC	out-of-frame	MTEKMSSFLYIGDIVSLYAEGSVNGFISTLGLVDDRCVVHPEAGDLANPPKKFR|gtmkpgvvrvpganqqneahsmlcfccleptltqdffqlknatilkkmwhiytmeyyaaikkdelmsfagtwmkletiicskltqeqktqh	.
TALL_VC003	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	6	8	0	34	37	high	.	.	duplicates(2),mismatches(2)	GCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...CTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGC	.	.	.
TALL_VC003	MIR143HG	IL17B	+/-	-/-	5:149419786	5:149377025	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	4	6	0	38	67	high	.	.	duplicates(3),low_entropy(3),mismatches(2)	AACAAGAGCATTGCAGGGAAAAGGGAAGAGAGGAAAAAAAAAAGACCTGCCCAGCCTAGAATCCCAAGCCTTGCCTCGAGCAGCTCAGGCCCTGCGGGCAGGTGGGGCATAGACACCAGGATCCCTGTGAGTCTCTGTCACTTGGCCCCTCGGTGAGGGCAGAAACTGGGAAAAGAGTGACAAAG|CTGTTTCTTCTTACCATTTCCATCTTCCTGGGGCTGGGCCAGCCCAGGAGCCCCAAAAGCAAGAGGAAGGGGCAAGGGCGGCCTGGGCCCCTGGCCCCTGGCCCTCACCAGGTGCCACTGGACCTGGTGTCACGGATGAAACCGTATGCCCGCATGGAGGAGTATGAGAGGAACATCGAGGAGATGGTGGaCCAG	.	.	.
TALL_VC003	RP11-127B16.1	U3(202312),RP1-149C7.1(65896)	-/-	./-	6:92723322	6:92321945	splice-site	intergenic	deletion	upstream	downstream	1	3	0	36	23	high	.	.	.	GCTGAAGGGCTCCTCAAGCCTGACCAGAGCGGACGCCGAGGCCGAGGAGGCGCTGAGAAGGAGCGAGGGCCGCCAGCACGTTGTCACCTCTCAAGA|ATTTATGGCTGAGGCTTCTATGACAACgGACgGATTAACTAGAGGAAAGCACACACCAAACAGGAGCCTTCAGAAATGAAGACTCAAAGACAGAG___GCTGGAATGAAGTGGCATGACCTCgGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGAAGCTGGGATTACAGGCACCTGCCACCAACCTCGGC	.	.	.
TALL_VC003	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	19	18	5	1160	94	medium	.	.	low_entropy(3),mismatches(3)	C??GCAGCTGCTGATGTATCCATATGGGTACTCAGTCAAAAAGGCCCCAGATGCCGAGGAACTC___...CAACACCCAACTCTTTGAGAGCTTTCTCTTGAGCATATTTGGCCCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAGGTGAAGACGGTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGG___GGACCAGGTTCTTCGAGTCCTGGCCAAAGATGAGAAGCAGCTTTCACTTCTCG	out-of-frame	tpnslrafs*aylalphvcmtspfsg*vktvvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalswqqlwak*	.
TALL_VC003	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	0	1160	144	low	.	.	mismatches(1)	CTCATGTGTGCATGACGTCTCCCTTCTCAGGATAGGTGAAGACGGTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCACACCCTGGAGGAG___ATATATAGCTGGATTGACAACTTTGTAATGGAGCATTCCGATATTGTCTCAAAAATTCAGATTGGCAACAGCTTTGAAAAC??G	out-of-frame	hvcmtspfsg*vktvvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|caag*	.
TALL_VC003	CPA4	CPA5	+/+	+/+	7:130312122	7:130349975	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	1160	110	low	.	.	.	CTCCACTCTGCAACACCCAACTCTTTGAGAGCTTTCTCTTGAGCATATTTGGCCCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTG...GGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGGACTTCTGGCGTGGCCCAGCCAGGCCCAGCCTCCCTGTGGATATGAGAGTTCCTTTCTCcGAACTGAAAGACATCAAAGC??A	out-of-frame	GTEYQVGPTCTTV|cgllawpsqaqppcgyessflrterhqs	.
TALL_VC003	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	6	24	2	80	47	medium	.	.	duplicates(1),mismappers(1),mismatches(2)	GCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGC...GACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAG	.	.	.
TALL_VC003	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	7	2	240	510	medium	.	.	duplicates(1)	GGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC003	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	35	510	low	.	.	read_through(7)	GAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAAC	out-of-frame	KTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC003	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	4	5	1	1438	459	medium	.	.	.	CCTTAAGTCTGAAATAACATTCACAAAGATTTCTGCAGGAGCCAAATTTGGTTGGTGGTGTTGTCACAGTGAGGCTCTTTGGGCTGTGCGGCACCTCATGACCATATTGGCTACACCCATTGTATT...TAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATC?AGCATCT	out-of-frame	ndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssi	.
TALL_VC003	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	8	1	0	581	72	medium	.	.	low_entropy(1),mismappers(1),mismatches(1)	AGGATGGTtATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCT...AAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGA??C	.	.	.
TALL_VC003	MTAP	CDKN2A	+/+	-/+	9:21818202	9:21994151	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	2	6	0	80	31	medium	.	.	low_entropy(2),mismatches(1)	AAAAATTAAAAAAAAaAA...AAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCCGTGAGCCGCGGGATGTGAACCACGAAAACCCTCACTCGCGGCGGGCCGCACGCGCGCCGAATCCGGAGGGTCACCAAGAACCTGCGCACCATGTTCTCGCCGCCTCCAGGGCCGAGCTCGGCAGCCGCTGCGCCGCCCTTTGGCACCAGAG___ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGAC	out-of-frame	KNVDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|krllp*	.
TALL_VC003	TRBV20OR9-2	TRBC2	+/+	+/+	9:33618502	7:142795703	CDS	intron	translocation	downstream	upstream	0	95	0	1	10677	low	.	.	duplicates(23),mismatches(20)	CTTgTCCaCTCTGACAGTGACCAGTGCCCATCCTGAAGACAGCAGCTTCTACATCTGCAtTcC|cc|GGGACTAGCGGGAGGGCACGATGATTCAGGTAGAGGAGGTGCTTTTACAAAAAACCCTGATGCAGTAAGCATCCCCACCCAGCTCAGGGAATGCAGCTACCAGGTGGGAAGAGTTCTCTGGGGCTGGTCCCAGCTGTGGTCTTGCAGGGTCCCCCAACCCAGCGAGCACCTGTCCATCTCCCTGTCCAGACTCGGCTTCCAAGGAATAAGAAGGCCAAGACAGCAAAGTGGGATTATCACTCAGCACTTTTAATAAAAC	out-of-frame	lStLTVTSAHPEDSSFYICip|rd*	.
TALL_VC003	EEF1A1P6	DNAH11	-/-	+/-	7:22510702	7:21893513	exon	intron	deletion/5'-5'	upstream	downstream	0	0	11	1017	15	low	.	.	duplicates(2),low_entropy(2),mismatches(54)	GGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTT...|...AGCTGGCATCAC	.	.	.
TALL_VC003	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510586	7:22264759	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	11	5098	6	low	.	.	duplicates(1),low_entropy(4),mismappers(1),mismatches(38)	CACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCC...|...GAGGCTGGAGAA??G	.	.	.
TALL_VC003	IGF2BP3	EEF1A1P6	-/-	-/-	7:23310662	7:22511214	3'UTR	exon	deletion	upstream	downstream	0	0	10	2	20376	low	.	.	low_entropy(5),mismatches(21)	A??CAAGTTTCTTTTG...|...CCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAAC	.	.	.
TALL_VC003	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	6	2	0	203	254	low	.	.	mismatches(1)	GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACA...GGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTATCTCTGTTTCTGGGGTTTTTGCAGTGACTTTTTC	in-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVL	.
TALL_VC003	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	0	130	254	low	.	.	low_entropy(1),mismatches(1)	GGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTcTTGTCATTCCTTAGTGCCC	out-of-frame	GELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC003	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	209	254	low	.	.	mismatches(1)	GTAGGACTCATGGCAGaTCTCACAGCATGTTTTTCAAGTGGCTTcGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTtATCTTTTTGGAGTTTTTTGCTTGGGG	out-of-frame	VGLMAdLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL_VC003	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	3	12	9	low	.	.	low_entropy(1),mismappers(1)	GCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGG	out-of-frame	ANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL_VC003	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	6	0	0	109	15	low	.	.	mismappers(1)	G??TATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAG	out-of-frame	?YRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC003	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	intron	deletion/read-through	downstream	upstream	0	5	0	12	12	low	.	.	.	GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAAT	in-frame	WIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEE	.
TALL_VC003	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	2	3	0	285	15	low	.	.	duplicates(1),mismappers(1)	CTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwc	.
TALL_VC003	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	3	1	0	270	186	low	.	.	duplicates(2),low_entropy(1)	GAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTG	.	.	.
TALL_VC003	EEF1A1P19	GHR	-/-	+/-	5:43495500	5:42670146	exon	intron	deletion/5'-5'	upstream	downstream	0	0	4	2957	1	low	.	.	mismatches(4)	TACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCcGGTaTGGTGGTCACCTTTGCTCCAGTCAACgTTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGT...|...TTTTGAATATTGT	.	.	.
TALL_VC003	RP13-258O15.1	PCDH11X	-/-	+/-	X:92676623	X:92571114	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	149	0	low	.	.	low_entropy(1),mismatches(5)	A??AAGGTCAgCAAATTGGCAAAgTAGTCcAGGTTTACAGGAAGAAATATGtTATCTACATTGAACGGGTGCAGCGGGAAAAGGCTAATGGCACAACTGTCCACGTAGGCATTCACCCCAGCAAGGTGGTTATCACTAGGCTAAAACTGG...|...AGGTTAATTCTGG	.	.	.
TALL_VC003	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	3	0	115	8	low	.	.	low_entropy(1)	GAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCAT??C...GTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGG	.	.	.
TALL_VC003	EEF1A1P13	TRIO	-/-	+/-	5:14652727	5:14492304	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	3195	5	low	.	.	low_entropy(2),mismappers(1),mismatches(18)	CAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCCGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCcAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTcGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAAC...|...GGAAGCTCGT	.	.	.
TALL_VC003	EEF1A1P12	RGPD3	-/-	-/-	2:106697475	2:106409825	exon	intron	deletion/read-through	upstream	downstream	0	0	4	17	18	low	.	.	.	G??AAAGATTGATCgCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGgTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTC...|...GGAGAAACAAAAAACAAGAGTGGGAAAAGACATCAAACATGTTTTTACTAATCGAAGTTCTAAAA...AAAAAAAAAGAAGAAATCTACTTCTAGTCACATAAGAGTAAAACTGCCCCTAAAAAAGACAGAGAGAAATCTCAAAAGCAGCCAGAGAAAGAAGACACATTGCCT	.	.	.
TALL_VC003	RP11-286B14.1	EEF1A1P11	+/.	+/.	1:95763105	1:96448274	intron	exon	deletion	downstream	upstream	0	0	4	2	3511	low	.	.	mismatches(8)	.	.	.	.
TALL_VC003	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	2	0	14	6	low	.	.	mismatches(1)	GCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTT...GGTGCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAACACGGGACTATGAGGATGTGAATGAAGAAGATCTCCTGGAATAGAGGAACTGgAATTGAC	.	.	.
TALL_VC003	ATP5A1	SLC14A2	-/-	+/-	18:46084207	18:45664093	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	4	2825	0	low	.	.	mismappers(2),mismatches(12)	AAACTGGAGCCCAGCAAGATTACAAAGTTTGAGAATGCTTTCTTGTCTCATGTaGTCAGCCAGCACCAAGCCTTGTTGGGCACTATCAG___GGCTGATGGAAAGATCTCAGAACAATCAGATGCAAAGCTGAAAGAGATTGTAACAAATTTCTTGGCTGGATTTGAAGCTTAAACTCCTGTGGATTCACATCAAATACCAGTTCAGTTTTGTCATTGTTCTAGTAAATTAGTTCCATTTGTAAAAGGG...|...CGAGACCCA	.	.	.
TALL_VC003	ZNF131	EEF1A1P19	+/+	-/+	5:43166575	5:43495133	intron	exon	deletion/read-through/5'-5'	downstream	upstream	0	0	4	1	49	low	.	.	mismatches(10)	TTTTTTGTATTTTTAGTgGAGACAGGGTTTCACCGTGTTGGCCAGGAT...|...CTTGTCCACTGCTTTGATGACACCCACCGCAACTGTCTGTCTCATATCACGAACAGCAAAgcGACCCAAAGGTGGATAGTCTGAGAAGCTCTCAACAATGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAG	.	.	.
TALL_VC003	MAPKAP1	SCAI	-/-	-/-	9:125473418	9:125132632	intron	intron	deletion/read-through	upstream	downstream	0	0	3	10	38	low	.	.	low_entropy(2),mismappers(2),mismatches(5)	GAAGTTTGAC...|...GTAAGAACATGAGTTTATTTTGGCTATATGGAGCGTAAGGTGCTTCAATGAACTGTCTTTAACCAGGCGGTTAAAAATATGGGTGTTTTGCAGAGAAGCAAGATAACGGCTTCAGGTATAGATTTT	.	.	.
TALL_VC003	SPATA22	OR3A3	-/-	+/-	17:3462483	17:3421393	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	2	1	0	76	25	low	.	.	mismatches(1)	TGAAAACAGTGGACACCGG___GCAAATACCACATTCAGTTTCTCGTCCTCTGAGAAGTCAAGATTCTGTCTTTAACTCTATTCAATCAAATACTGGAAGAAGCCAGGGTGGTTGGAG|ATTCCACTGAACCCAGCCTCATGTAGCTGAAGACACCTGTCCCATAGAAGATGCCCACCACAGTGAGGTGGGAGCCACATGTGGAGAAGGCCTTCTTTCTGCCCTCAGCAGAGCGGATTTGCAGCACAGCAG	out-of-frame	KTVDTGQIPHSVSRPLRSQDSVFNSIQSNTGRSQGGWr|fh*	.
TALL_VC003	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87036400	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	0	2	323	6	low	.	.	mismatches(1)	AGAAGCTCAGTTCCACCACAAAAAGTGCAGATCAGTTAAACGGCCTGCTTCGGGAAACAGAGGCAACCAGTGCAGTCCTTATGGAGCAAATTAAG___CTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTTTCTATCAACACCACGAGAGAAACACACCCTCCAGCCTGGGTCCCAGAATGAGGCAGGTGAGGCAGAACGGCAGCAGAACAGCCGGCTACACATCTAC	out-of-frame	KLSSTTKSADQLNGLLRETEATSAVLMEQIKLLKSEIRRLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|gfyqhherntpsslgprmrqvrqngsrtagyts	.
TALL_VC003	XXbac-BPG299F13.17	ABHD16A	-/.	-/.	6:31197234	6:31694387	exon	intron	deletion	downstream	upstream	0	0	3	56	5	low	.	.	.	.	.	.	.
TALL_VC003	EEF1A1P11	PTBP2	+/+	+/+	1:96448005	1:96807103	exon	intron	deletion/read-through	downstream	upstream	0	0	3	6	7	low	.	.	mismappers(1)	GGAAAGGGCTCCTTCAAGTATGCCTGgGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAtACCAGCAAGTACTATGTGA___C...|...AGTTGTATGTGAC	.	.	.
TALL_VC003	XXbac-BPG299F13.17	XXbac-BPG32J3.20	-/.	-/.	6:31197234	6:31694387	exon	intron	deletion	downstream	upstream	0	0	3	56	5	low	.	.	.	.	.	.	.
TALL_VC003	ANKH	CCT6P2(10824),EEF1A1P13(99)	-/-	./-	5:14708878	5:14651842	3'UTR	intergenic	deletion/read-through	upstream	downstream	0	0	3	16	45000	low	.	.	low_entropy(1),mismatches(11)	CTTTCCCTCTAAATCC...|...AAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCgTGTGGCAGTTTTAAGTTATTAGTTTTTAAAATCAGTACTTTTTAATGGAAACAACTTGACCAAAAATTTGTCACAGAATTTTG	.	.	.
TALL_VC003	EEF1A1P13	DNAH5	-/-	-/-	5:14652235	5:13867682	exon	intron	deletion	upstream	downstream	0	0	3	115	1	low	.	.	mismatches(6)	GTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCCAC...|...GTGAAACTTCC	.	.	.
TALL_VC003	PRRC2C	DNM3	+/+	+/+	1:171592972	1:171900309	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	3	1604	1	low	.	.	mismappers(1),mismatches(10)	G??AAGTAGAATCAAGTCTCAAATAATGCCTTTTTAATTGTATCCTCTAGTATTATAGATATAGGACAGTACTGTATCATACCTCTGTGAATGTAAAATATCTTGTACCTGCTTTATGATACGT...|...GCAGATTCACG	.	.	.
TALL_VC003	TTC3	KCNJ6	+/+	-/+	21:37201614	21:37628438	3'UTR	intron	deletion/5'-5'	downstream	upstream	0	0	3	661	1	low	.	.	low_entropy(1)	CAAAAAACGTGCGTGTGCTCAAATGTGGGCACAAGTATCACAAAGGG___TGCTTTAAGCAGTGGCTTAAAGGGCAGAGCGCTTGCCCGGCCTGCCAGGGTCGTGATCTCCTGACAGAAGAGTCACCTTCTGGAAGAGGCTGGCCCAGTCAGAATCAGGAGCTGCCTTCCTGCTCTTCTAGGTAGTCACACTTCACTAAAGTGTCATCCACCAGTGTGTTGAATC...|...TGGCAGAAGAGAA	.	.	.
TALL_VC003	EEF1A1P9	ARHGEF38	+/+	+/+	4:105485675	4:105621731	exon	intron	deletion/read-through	downstream	upstream	0	0	2	159	0	low	.	.	mismappers(1),mismatches(4)	C??AAGTAAAATCTGTcGAAATGCACCATGAAGCTTTGAGTGAAGcTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGAC...|...ATTATTGTGTGTAAG	.	.	.
TALL_VC003	NPIPB3	DNAH3	-/-	-/-	16:21406653	16:21123560	CDS	intron	deletion/read-through	upstream	downstream	0	0	2	515	0	low	.	.	low_entropy(1),mismatches(7)	ATGGAAAGAGGAAGACCGCCAGAAAACA___GAAAATGcTTCAACGTGCGCAAGAGTTGCGGCGGCGAGaAGAGGACTACCACAAATGCAAA___ATCCCCCCTTCTGCAAGAAAGGCTCTTTGCAACTGGG...|...ATTGCAATGTTA??T	.	.	.
TALL_VC003	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40875606	3'UTR	intron	deletion/read-through	downstream	upstream	0	1	1	66	6	low	.	.	mismappers(1)	GAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|ATACAGGATCTCACTATATTGACCAGGCTGGTTTTGAACTCCTGACCTCAAGCAATCCTCCTGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCATCTGGCCAGATGATGACCTTGtCCTCTGATTGCTGCCACATAACTGGAACTCAG...AGGACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTAC??C	.	.	.
TALL_VC003	IST1	LINC01572	+/+	-/+	16:71928594	16:72369916	3'UTR	intron	deletion/5'-5'	downstream	upstream	0	0	2	954	0	low	.	.	mismappers(1),mismatches(1)	GGAGCCCTCTGTGGCCTTTTGCTTTGCGTGCTGTTTCCCTTGTACCAGAGGGCGGCACCGTGGAAATTCTGTTTTCCCTGTAGCATATTGTGTTGGATTGCATTACTGGCAGAGAAAGGACAAGGT...|...CAGACCTCAC	.	.	.
TALL_VC003	FRYL	SLAIN2	-/-	+/+	4:48780078	4:48369849	splice-site	splice-site	inversion	upstream	upstream	0	1	0	18	90	low	.	.	.	CGGGGACCGGCGGCGCTGGAGGAGCGAGGCAGCTGTACTAGGACTGGGAACGG|GCTGTATTCATCACCAAAGAAAAAACTTACACCAATGCAGAAATCGGTTAGTCCATTAGTTTGGTGCAGGCAAGTTTTGGATTACCCAAGTCCTGATGTTGAGTGTGCTAAAAAATCTCTTATCCACAAACTTGATCAAACTATGTCAG___CTCTCA	.	.	.
TALL_VC003	FRYL	SLAIN2	-/-	+/+	4:48684673	4:48369849	splice-site	splice-site	inversion	upstream	upstream	0	1	0	19	90	low	.	.	.	TTAACATCTAAATGCTTAATTCCTGAAACCACTCAAGAGTCATAGGATTAGATGATCCAAGTCACCAAGAAATTACTGTCTCAAGTGATACG|GCTGTATTCATCACCAAAGAAAAAACTTACACC...TGAGTGTGCTAAAAAATCTCTTATCCACAAACTTGATCAAACTATGTCAG___CTCTCAAGAGGCAGAATTTATATAATAATCCTTTCAACTCTATGAGTTACACCAGTCCTTACAGTCCAAATGCCA	.	.	.
TALL_VC003	PELI2	CREB1	+/+	+/+	14:56178464	2:207596914	splice-site	splice-site	translocation	downstream	upstream	1	0	0	50	195	low	.	.	.	C??TGAAATACGGGGAcCTGGTGGTGCTCGG___GTACAATGGTGCTTTACCCAATGGAGATAGAGGACGGAGGAAAAGTAGATTTGCCCTCTACAAGCGGCCCAAGGCAAATGGTGTCAAACCCAGCACCGTCCATGTGATATCCACGCCCCAGGCATCCAAG|GGAAGCAGCTCGAGAGTGTCGTAGAAAGAAGAAAGAATATGTGAAATGTTTAGAAgAC	out-of-frame	?KYGdLVVLGYNGALPNGDRGRRKSRFALYKRPKANGVKPSTVHVISTPQASK|gsssrvs*	.
TALL_VC003	ATL2	HNRNPLL	-/-	-/-	2:38377143	2:38591648	splice-site	splice-site	duplication	upstream	downstream	0	1	0	129	251	low	.	.	.	CCGCGGTTAACCACGTCTCGTCCACGACCTCCCTAG|GAGGCAGGTGGAAGTCATCATAAAGTTTCTGTTTCACCCGTCGTCCATGTTCGAGGACTCTGTGAATCTGTGGTGGAAGCAGACCTCGTG...GCTGGAAAAATTTGGGACAATATG___CTATGTGATGATGATGCCATTTAAACGACAGGCTCTAGTGGAATTTGAAAACATAGATAGTGCCAAAGAATGTGTGACATTTGCTGCAGATGAACCCGT??A	out-of-frame	AVNHVSSTTSL|ggrwkss*	.
TALL_VC003	ATL2	HNRNPLL	-/-	-/-	2:38377143	2:38585881	splice-site	splice-site	duplication	upstream	downstream	0	1	0	129	424	low	.	.	.	GTTAACCACGTCTCGTCCACGACCTCCCTAG|CTATGTGATGATGATGCCATTTAAACGACAGGCTCTAGTGGAATTTGAAAACATAGATAGTGCCAAAGAATGTGTGACATTTGCTGCAGATGAACCCGTGTACATTGCTGGTCAACAGGCTTTTTTCAACTA??C	out-of-frame	VNHVSSTTSL|am*	.
TALL_VC003	CPSF6	ZFC3H1	+/+	-/-	12:69256842	12:71611097	splice-site	splice-site	inversion	downstream	downstream	1	0	0	412	349	low	.	.	.	GGAAAGAGAATTGCATTATATATTGGAAATCTAACATGG___TGGACAACAGATGAAGACTTAACTGAAGCAGTTCATTCTTTGGGAGTAAATGATATTTTGGAGATAAAATTTTTTGAAAATCGaGC...GGATCTGTTACCTAAAAGAGAACTTCATGGTCAGAATCCTGTTGTAACTCCATGCAATAAACAGTTCCTGAGTCAATTTGAAATGCAGTCCAGGAAAA|AGCCATTGCTGCTGAGATTGTTCTAAA	out-of-frame	DLLPKRELHGQNPVVTPCNKQFLSQFEMQSRK|kplllrlf*	.
TALL_VC003	HP1BP3	ETFA	-/-	-/-	1:20757166	15:76295737	splice-site	splice-site	translocation	upstream	downstream	1	0	0	1018	391	low	.	.	.	CAGAACCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGG...GCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAG|GCCTCATTGCTACGATTTCAGAGTACCCTGGTAATAGCTGAGCATGCAAATGATTC	in-frame	QRAVERGQLEQITGKGASGTFQ|ASLLRFQSTLVIAEHAND	.
TALL_VC005	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	13	9	1	35	38	high	.	.	duplicates(2),low_entropy(3),mismatches(1)	GGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAG	out-of-frame	LRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL_VC005	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	8	12	1	53	97	high	.	.	duplicates(2),mismappers(1)	G___...CCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGAT[t]TTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCT	.	.	.
TALL_VC005	CAPG	LRPPRC	-/-	-/+	2:85413835	2:43995799	splice-site	CDS	inversion/5'-5'	upstream	upstream	1	3	3	28	108	high	.	.	.	G??GGCTGAGACAGCGCCCAGGGCCTCGGAGCAAGGCGTTGGCAGGCAAGTAGTGCGCTTCGGGGTCCGGTCGCCGGGGACCTGGGCTCCCCATGTAGGGGTCGAACGGGCTTAGCCGGTTCGGGGGCGCCCCGCTCCCTCCTCTTCTCCCACAGCCGGGGTCCTCTCTTAGGGGCGCGCCGTCTCCTGGCTTC|CCGGCCACGGGCCCGGCGCGAGCGGCGGGCAGATAGGAGGCGGCATGCAGCCGGCCCGGGCCGCCAGGGAGGAGGCGCAGGGAGAGCGGGAGGCGCGGGGCCGCCCCGGCACGCAGCAACCAACGCGCGGATCTCAGCAGGGCTGCCATTGCTCGAACGTCCCCGCAGCGGGAAGCACG	.	.	.
TALL_VC005	TMEM52B	APOLD1	+/+	+/+	12:10186589	12:12786909	splice-site	splice-site	deletion	downstream	upstream	4	1	1	290	16	high	.	.	duplicates(1)	C??TGGTATATATG___GTTGCTAGTGGTAATTGGCGCGCTGCTTCTCCTGTGTGGCCTGACGTCCCTGTGCTTCCGCTGCTGCTGTCTGAGCCGCCAGCAAAATGGGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTCATTGCTTTCGATCACGACAGCACTCTCCAGAGCACTATCACAT|GGAATGGAGAGGCCGGCGGCCCGGGAGCCGCATGGGCCCGACGCGCTGCGGCGCTTCCAGGGACTGCTGCTGGACCGCCGAGGCCGGCTGCACGGCCAGGTGCTGCGCCTGCGCGAGGTGGCCCGGCGCCTGGAGCGCCTGCGCAGGCGCTCCCTCGTAGCCAACGTGGCCGGCAGCTCGCTGAGCGCAACGGGCGCCCTCGCCG	out-of-frame	?WYIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDGGPPPCEVTVIAFDHDSTLQSTIT|wngeaggpgaawarraaalpgtaagpprpaarpgaaparggpapgapaqalprsqrgrqlaerngrpr	.
TALL_VC005	TMEM52B	APOLD1	+/+	+/+	12:10186589	12:12812261	splice-site	splice-site	deletion	downstream	upstream	1	1	0	290	14	medium	.	.	duplicates(2)	C??CTTCTCCTGTGTGGCCTGACGTCCCTGTGCTTCCGCTGCTGCTGTCTGAGCCGCCAGCAAAATGGGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTCATTGCTTTCGATCACGACAGCACTCTCCAGAGCACTATCACAT|TGACGGACACCAGATTGCCCCCAACTTCCCATCCTCAGGAATAAAACTGCAACGAGCACCCTGCGCAGTGTGAGACCCAAGTGACAGGCCACAGGAGGGCACTCGCTGGCCATGGGGCATGCAACATACAGCTCTGAATTTGCTGCTTTCCAGAATAGCCT	out-of-frame	?LLLCGLTSLCFRCCCLSRQQNGEDGGPPPCEVTVIAFDHDSTLQSTIT|ltdtrlpptshpqe*	.
TALL_VC005	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	8	24	3	80	68	medium	.	.	duplicates(3),low_entropy(1),mismatches(3)	GCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACA...___ATG	.	.	.
TALL_VC005	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	2	0	496	53	medium	.	.	duplicates(2),low_entropy(2)	G??ATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCgCGCCTGTgATACCAGCACTT	.	.	.
TALL_VC005	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	1	79	18	medium	.	.	.	CTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCGAGGATTTAGCTAGCTGGTGACGCCGGAGCACGAAGTTGTACAGGTAGCCAGCAGCACCCACGCGAGCCCGCGGTTACCCTGGCCGCGCGGCTACTGTAGAGTGGGCTGGC	out-of-frame	LTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
TALL_VC005	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	79	153	medium	.	.	.	ATATAACCGACTGACCTGGcTAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAAC	out-of-frame	YNRLTWlVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC005	STK31	AC009508.1(6903),RNA5SP228(228467)	+/+	./+	7:23832343	7:23904238	CDS	intergenic	deletion/read-through	downstream	upstream	6	4	0	2683	36	low	.	.	duplicates(2),low_entropy(1),mismatches(2)	GTCAAATCCCTCCTCTGTAGCTTGATATGTTATAGAAGTTCAATGACTGCTGAACAAGTTTTAAATGCTGAATGTTTCTTGATGCCAAAGGAGCAATCAGTTCCAAACCCAGAAAAAGATACTGAATACACCCTATATAAAAAGGAAGAAGAAATAAAGACGGAGAACTTGGATAAATGTATGGAGAAGACAAGAAATG|TTTCTAGGAGCTAATACTGTGTCCAGAATTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGACGCCGTGGACCCTCGCG___ATGTGGAAAATTGAGGCTCAGAAAAAATGAACTTGTTGAAATCTAT...ACTTCATTGTCTGCAGAGATGCCTCATCCTACACCCCTCAGTCACTCATATCTGGATACATTGGACCTTGTCAACATCAATAATGGACATACCTCTGATATTTGAACTCTGAATCTCACTCTGTG	out-of-frame	VKSLLCSLICYRSSMTAEQVLNAECFLMPKEQSVPNPEKDTEYTLYKKEEEIKTENLDKCMEKTRN|vsrs*	.
TALL_VC005	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	5	0	19	18	low	.	.	duplicates(1),low_entropy(3)	CAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAG	.	.	.
TALL_VC005	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	7	0	46	19	low	.	.	.	CAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACcCC	.	.	.
TALL_VC005	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	4	0	7	11	low	.	.	.	GAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCC??C	.	.	.
TALL_VC005	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	0	150	214	low	.	.	.	CCCGGAGATGTGGACACGGCCGCCCCAGGAGGGTCCTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAG??A	out-of-frame	pgdvdtaapggslfgGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC005	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	27	214	low	.	.	duplicates(2),read_through(5)	CCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAAC	out-of-frame	RGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC005	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	5	0	76	8	low	.	.	.	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAG	.	.	.
TALL_VC005	SSBP2	DHFR	-/-	-/-	5:81470810	5:80651528	intron	intron	deletion	upstream	downstream	0	0	5	36	3412	low	.	.	duplicates(1),mismappers(1),mismatches(15)	TGGAAAAACAA...|...CCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGAtGAAGGCTaCAAAGTAAGCGCAAGTACCCACGTAAAGAcGTTAGGTCAAGGTGTAGCCC	.	.	.
TALL_VC005	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29505872	exon	5'UTR	deletion/read-through	upstream	downstream	0	3	2	52	41	low	.	.	duplicates(2),low_entropy(1),mismatches(1)	GCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTATGATCTCGTGAAACCTTGAGAGAAACTGAATGACGAATGAAACTATTGTTCCTGTTTCACACAGAAGAAAACTGAG___GTTGGCACTCATCATGAGCCCCTGTTCTCATTCTGCAAATGGTGAAGCTCTCTATTGTCCTGACCCCACAGTTCCTGTCCCATGACCAGGGCCAGCTCACCAAGGAGCTGCAGCAGCATGTAAAGTCA	.	.	.
TALL_VC005	EEF1A1P6	DNAH11	-/-	+/-	7:22510895	7:21791290	exon	intron	deletion/5'-5'	upstream	downstream	0	0	4	828	1	low	.	.	duplicates(1),low_entropy(1),mismatches(6)	CACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGT...CCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGC...|...GCAGACTGGA??C	.	.	.
TALL_VC005	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	54	106	low	.	.	duplicates(1)	GTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGG	.	.	.
TALL_VC005	C9orf171	EEF1A1P5	+/.	+/.	9:132504241	9:133019713	intron	exon	deletion	downstream	upstream	0	0	4	1	8384	low	.	.	mismappers(1),mismatches(4)	.	.	.	.
TALL_VC005	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	0	0	41	13	low	.	.	duplicates(1),low_entropy(1),mismappers(3)	CAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTG??G	out-of-frame	GIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC005	C6orf183	CCDC162P	+/+	+/+	6:109270176	6:109285976	exon	splice-site	deletion/read-through	downstream	upstream	1	2	0	31	27	low	.	.	.	CCAGATTCAGTCTTATGGCTGAGTAGCAAGCATCCCAGCTCATTTGGGAGTTTGATTCATATATTTACATGTTGAATAAGTGGTGATTTCAACCCTCAACTCACTTCTTTATGCAAGACATTCCT...GAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGCACCCCTCAAGGGAGCTGTCCTGCTAATGTCAAG|GATGAAATTGGAAAAGTCAAGAGAGATGTTATGGTTGAATATTGTCAGAA___GTTTAACCACCGCATGTCTCACTATGCTCTTCGGGGTCAGATCATGGCATACTGCAAT...TCTGGAAGATTTTCCTACCATCAGGGACACCTTTTTCATGGTAGGGCAACCACAAGAGAAGAAGGGGTTGAGAGACTCCAAGGAGGGCCTCAAGGCTGACCCCAG___AAGATTTCAGCCCCGGCCACGATGTTTGCTGTCAGCGGATGGAAAAGTCTTCCTCAATTGATGGTTCATACCCCATTCTTC	.	.	.
TALL_VC005	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121455	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	12	6	low	.	.	mismappers(1)	GCTGGACCAG___CAGATTATGAGCTTACAGAAAGCCTGGCCTACATTTTACTCTTTTTGGATTTCTTCCTCATCAAGAGACTGCTGCAGTGCCTGTCAT___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|CTGGGCAGATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAG	.	.	.
TALL_VC005	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121447	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	12	6	low	.	.	.	C??GAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|ATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTC	.	.	.
TALL_VC005	EEF1A1P13	TRIO	-/-	+/-	5:14653226	5:14512239	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	118	0	low	.	.	mismappers(1),mismatches(4)	TGCCGCCAGAACACAGGTGTCgTGAAAACTACCCCTAAAAGCCAAAATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCGGGCAAGTCCACCACTACTGGCCATCTGATCTATAAATGCgGTgGCAT...|...GCAAACATAT	.	.	.
TALL_VC005	CUX2	MAPKAPK5	+/+	+/+	12:111226592	12:111868753	intron	CDS	deletion	downstream	upstream	0	0	2	0	86	low	.	.	mismappers(1)	CTAAAGAACG...|...GGCCCGACTCTTAATTGTAATGGAGATGATGGAAGGGGGAGAGCTATTTCACAGAATCAGCCAGCACCGGCACTTTACAGAGAAGCAAGCCAGCCAAGTAACAAAGCAG___ATAGCTTTGGCTCTGCG	.	.	.
TALL_VC005	FAM157B	FO082796.1	+/+	+/+	9:138251596	9:138294343	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	8	1	low	.	.	mismappers(1)	AGCTTCCGAGGCTCTGCGGGAGAATCCGTTTCCTGGCCGTAGAGGTGGCCTGCACTCCGCAGCTTGTGCTGCCCGTCTCGAATGACTGGAGTTTCCTGCTTCTGTCACTACACCTCCCACCCTCTCCATCACCTGCTCTGCTCTTACAAGGATCCGA___AGAAATGGAATCATCGTATCGCTGATCTACGTAAACAAACTGAAGAATTGTCTGAAAGAAAATATG___ACATGAACTTATGAATTCAACAGGTGAAGATTTACAACTTGATAAATCAACTTTGTCAG|CTGATCCATATGAATTCCTCTTATTAAGAAAAAT	.	.	.
TALL_VC005	DLEC1	XYLB	+/+	+/+	3:38123083	3:38406880	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	398	3	low	.	.	.	CCCATGTGGTTTTGCTTTTGTGGTGTTACTGCCTTGCTGCTAGAGCAGCAGGACTGTCTGCGTAGCGCCTCCAGCCTGGGACCTCACTCAGTTCCCAGGGTATTCAAAGACGGCAGCGGCTCCC...|...ATGTGAAAAGACCAAATCTACaTCTGATTGGTGTACCTGAAAGTGAtGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGC	.	.	.
TALL_VC005	EEF1A1P5	VAV2	+/+	-/+	9:133019966	9:133786050	exon	intron	deletion/5'-5'	downstream	upstream	0	0	2	25869	0	low	.	.	mismappers(2),mismatches(6)	AGGACACAGAGACTTtATCAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCAC...|...TCTTGCCCATGCT	.	.	.
TALL_VC005	MME	PLCH1	+/+	-/+	3:155169981	3:155511928	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	95	0	low	.	.	mismappers(1),mismatches(3)	AAAGAGGTGACTGATGGGGCCTGCAGTTTGTCAGTGACCAAAGATGATCAGAGTGTGAAGCTTGGGAGATTAAGTCAGCTACAAGGTTTCCAAAAGAATGAGTCCAACCAGTTCCAcGG...|...ATGGCGGGC	.	.	.
TALL_VC005	LYST	ARID4B	-/-	-/-	1:235749332	1:235196077	intron	CDS	deletion	upstream	downstream	0	0	2	2	692	low	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(2)	GTTCGGTTG...|...CTGCTGATAAAAATGTGCCAAAGATAAAACATCGGAAGAAAATAAAG___AATAAATTAGACAAAGAAAAAGACAAAGATGAAAAATACTCTCCAAAAAACTGTAAACTTCGGCGCTTGTCCA??C	.	.	.
TALL_VC005	SON	AP000320.7	+/+	+/+	21:33577281	21:34084366	3'UTR	intron	deletion	downstream	upstream	0	0	2	881	2	low	.	.	mismappers(1),mismatches(2)	ATGAAGTCTGACTAGAATTCTATTGCAGAGGCCA[a]GTACATTTAGTATGGCATTGAGTTGTGATATAGTTTTACTTTGATGTGCATTTTGAATTTCAGCTACACCTAGATAGACGTAAAATGATA...|...ATAAAATTGGA??C	.	.	.
TALL_VC005	CUL2	PARD3	-/-	-/-	10:35010108	10:34640273	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	2	162	1	low	.	.	low_entropy(1),mismatches(1)	TGTGCCTCCATAATTTGGTCATTTGGCAGCCCCTGTTTTCTGCTGTTTACAACATCACCAGTGCCACGTCATGAGCGTCAAAGAAAATGCCTAGAGATATTTCAAGCTCATGTCATTATGACATTT...|...TTTTAAAGAACG	.	.	.
TALL_VC005	ENTPD4	POMT1	-/-	+/+	8:23434317	9:131506403	splice-site	splice-site	translocation	upstream	upstream	2	0	0	143	121	low	.	.	.	G___GATTATTGTGCAACAAAGTGGTCCATTTTGCGGGAACGCTTTGACCGAGGACTGTACGCCTCTCATGCTGACCTCCACAGGCTTAA___GTATCAGTGCTTCAAATCGGCCTGGATGTTTGAGGTGTT...TGCAAGTTTACGACAAGGAGGTTCAGTGGACCCTTGGAGCCATCCTCTACAGGACCCGCTTTCTACCATTAAG|GTTATTTAGGAGGATTCGATGGCAATTTTTTGTGGAACAGAATTGGAGCAGG	out-of-frame	QVYDKEVQWTLGAILYRTRFLPLr|lfrrirwqffveqnws	.
TALL_VC005	KLF12	PIBF1	-/-	+/+	13:73943981	13:72821849	splice-site	splice-site	inversion	upstream	upstream	0	1	1	88	98	low	.	.	.	CTTTGAGAACAGAATGTTAATGCTTGATGGGATGCCGGCAGTCAGAGTCAAAACAGAGCTTTTGGAATCTGAACAAGGG|ACATATGAGGAAGATCGAAAAAACTACTCTGAAGTTCAAATTAGATGTCAACGTTTGGCCTTAGAATTAGCAGACACAAAACAGTTAATTCAGCAAGGTGACTACCGTCAAGAGAACTATGATAAAGTCAAGAG___TGAACGTGATG	in-frame	MPAVRVKTELLESEQG|TYEEDRKNYSEVQIRCQRLALELADTKQLIQQGDYRQENYDKVKSERD	.
TALL_VC005	GNB4	TBXAS1	-/-	+/+	3:179451346	7:140007091	splice-site	splice-site	translocation	upstream	upstream	0	1	0	23	515	low	.	.	duplicates(1)	CGGCAGCGCGCGGTCGACGCGGGCCTGAGCTCCCTCCAG|ATGGCCCCTGAGTTCTGCAGCCTCGAGGAAGGCCTGCCCTATCTGGACATGGTGATTGCAGAGACGCTGAGGATGTACCCGCCAGCT...CCCCGCAGGCGCTGTGCTAGAGATGGCCGTGGGTGCCCTGCACCATGACCCTGAGCACTGGCCAAGCCCGGAGACCTTCAACCCTGAAAG___GTTCACGGCTGAGGCCCGGCAGCAGCACCGG??C	.	.	.
TALL_VC010	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	9	9	0	111	60	medium	.	.	duplicates(33),mismappers(3)	AGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___...CCCTGCGGCGGACGGGTCGGATCGTGCTCGTGGCCAGGGCGCAGTCAGGTGTCGCGTGGTCCTGATCTAGGAAGAGACTGCGGCCTTATCACCGTCTCGGTGTCTGCTTTCACCTTCAACcaCCCC...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACC	.	.	.
TALL_VC010	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	6	8	0	66	194	medium	.	.	duplicates(79),low_entropy(22),mismatches(5)	GGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGCAGCAAC	.	.	.
TALL_VC010	XXbac-BPG299F13.17	ABHD16A	-/.	-/.	6:31197234	6:31694387	exon	intron	deletion	downstream	upstream	0	0	4	41	7	low	.	.	duplicates(2),mismatches(1)	.	.	.	.
TALL_VC010	XXbac-BPG299F13.17	XXbac-BPG32J3.20	-/.	-/.	6:31197234	6:31694387	exon	intron	deletion	downstream	upstream	0	0	4	41	7	low	.	.	duplicates(2),mismatches(1)	.	.	.	.
TALL_VC010	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	4	0	38	22	low	.	.	duplicates(11)	GGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGG	.	.	.
TALL_VC010	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	15	14	low	.	.	duplicates(5)	CCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGG	.	.	.
TALL_VC010	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	10	14	low	.	.	duplicates(7)	GCCGTGGCTTGAtCGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGaACCAC	.	.	.
TALL_VC010	GRK6P1	MICU2	+/+	-/+	13:21320641	13:21512439	exon	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	14	18	low	.	.	duplicates(1),mismatches(2)	CTCTGCAAGGACCCCGCTGAACGCCTGGGGTGTCGTGGGGGCAGTGCCCGCGAAGTGAAGGAGCACCCCCTcTTGAAGAAGCTGAACTTCAAGCGGGTGGGAGCCGGCATGCTGGAGCCGCCCTTCAAGCCTGACCCTCGGGCCATTTACTGCAAGGATATTCTGGACATTAAACAGTTCTCTAGGGTCAAGGGTGTGGAGCTGGAGGCTACCGACCAAGACTTCT...|...TTTTTttTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTTGCCCAGGCcaGAcTGC	.	.	.
TALL_VC010	EEF1A1P5	VAV2	+/+	-/+	9:133020672	9:133778539	exon	intron	deletion/5'-5'	downstream	upstream	0	0	3	2229	1	low	.	.	low_entropy(1),mismatches(3)	GCCGGCTATGCCCCTGTATTGGATTGCCACAcGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTC...|...CCCGGGGAGCCCA	.	.	.
TALL_VC010	FRMPD4	TMSB4X	+/+	+/+	X:12464325	X:12975118	intron	5'UTR	deletion	downstream	upstream	0	0	3	1	7936	low	.	.	mismatches(3)	GGTTGGCCAA...|...GGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCGCCTCGCTTCG___CTTTTCCTCCGCAACCATGTCTGACAAACCCGATATGGCTGAGATCGAGAA	.	.	.
TALL_VC010	TPR	HMCN1	-/-	+/-	1:186318489	1:186151033	CDS	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	213	0	low	.	.	.	ATGCTTCGGAACATGCCTCTCAATCTGTTCCAATGGTGACTACATCCACTGGCACTTTATCTACAACAAATGAAACAGCAACAGG...|...TCTACTTTCAC	.	.	.
TALL_VC010	CMAHP	FAM65B	-/-	-/-	6:25111649	6:24935863	intron	CDS	deletion/read-through	upstream	downstream	0	0	2	0	51	low	.	.	mismappers(1)	TGAAAAGGGG...|...TGAAGAGGATGATGTTTTTGGTGAAG___GACTACCGACCAGACTCCCGGAAATCATGTTGGTA	.	.	.
TALL_VC010	RP4-717I23.3	BCAR3	-/.	-/.	1:93338052	1:93748521	exon	intron	deletion	downstream	upstream	0	0	2	491	0	low	.	.	low_entropy(2),mismappers(1),mismatches(3)	.	.	.	.
TALL_VC010	TNK2	XXYLT1	-/-	-/-	3:195863563	3:195249054	3'UTR	intron	deletion	upstream	downstream	0	0	2	1577	0	low	.	.	mismappers(1),mismatches(2)	CGGGCAGAATGTGACTTGTGGCCTTACCATGGACTTGAATGGGACTTGGCTGGCCTCAGGATCTTGTGCCTGGAAATAGaCTGAGGTGGCTCAGGAAGCGGAGAAAaGGTGCCAGACCATTCTCTG...|...GCCCTAGAGCTGTC	.	.	.
TALL_VC010	RPTOR	BAHCC1	+/.	+/.	17:80764074	17:81434416	intron	intron	deletion	downstream	upstream	0	0	2	82	6	low	.	.	mismappers(1),mismatches(4)	.	.	.	.
TALL_VC010	FOXD2-AS1	SUMF1	-/-	-/-	1:47433976	3:4366769	exon	intron	translocation	upstream	downstream	0	2	0	8	3	low	.	.	duplicates(1)	CGCCCGCAGATTTCTCTAATTTTATTCACAAAACTGGACACCCTCAGGGAAAGCGGCAAAGCCGGCGCGAGCCTCCTTCCCAC|AACGCAGTTCCTCACCAGgAATGGAACAAAGCTGGATGGAGAATGACTTTGACGAGTTGAGAGAAGAAGGCTTCAGACGATTGAACTACTCCGAGCTACAGGAGGAAATTCAAACCAAAGGCAAAGAAGTTAAAAACTTTGAAAAAAATTTAGACG	.	.	.
TALL_VC010	RYR1	ACTN4	+/+	+/+	19:38579807	19:38714042	intron	intron	deletion/read-through	downstream	upstream	0	0	2	1	24	low	.	.	mismappers(1),mismatches(6)	AGGGGGCTCTC...|...CCTCCGGGACCCGGGCGCCCCTGCTCTGTTGCCCCCAGCTCTCCAGCTCTCGGCTTCCCATCCTTTCACCTTCCCACCGGGAGAGACTCCTCCGCAGTCTTAGGTCCAACGCAGCCGACCCGTCC	.	.	.
TALL_VC010	SEPT9	TMC6	+/+	-/+	17:77484071	17:78113823	3'UTR	exon	deletion/5'-5'	downstream	upstream	0	0	2	9	161	low	.	.	mismappers(1)	TAGCTTCCTCGT...|...GATCgtAGCTTCCTAGTGGCCAAAGTaAAAAGGGAAATGTAATCAGCAGCCCAGAGCCAGCCgGACTCAATTTAAAACCAGCCCTGCC	.	.	.
TALL_VC010	ZFC3H1	PDCD6IP	-/-	+/+	12:71620005	3:33866623	CDS	3'UTR	translocation	upstream	upstream	2	0	0	24	185	low	.	.	duplicates(1)	GAGAG___GTATGAGGCTGCAATGGAGCTTTGTAAATCTTTATTGGAATCATGTCCTATTAACTGCCAGTTGCTGGAAGCTCTTGTTGCATTATATTTGCAAACAAATCAGCATGACAAAGCCAGAGC|TACTCTCCTGGACTGAATGCAGTGTATAATTTCTGTCTACAGCTAGAAGCTGTGCCCC	out-of-frame	ERYEAAMELCKSLLESCPINCQLLEALVALYLQTNQHDKARa|tlld*	.
TALL_VC010	UBR4	MAPKAPK5	-/-	+/+	1:19076874	12:111901574	CDS	3'UTR	translocation	upstream	upstream	0	0	2	650	106	low	.	.	duplicates(1)	G___GCTGACAGATAAGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAG___AAGGTGCCTACCAGTAACACAGAGGGAGG...|...GCAGTGGCTCCACCACCGGCCCCAGAAATAAAGCCAGAAGCAGCAGAAGTGGCCACAGAAGAAAAAGAAGAGAAGGAGGAAGAAAAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGAATCAGA	.	.	.
TALL_VC010	BRF1	IGHG1	-/.	-/.	14:105292375	14:105814125	intron	intron	deletion	downstream	upstream	0	0	2	4	2	low	.	.	duplicates(1),mismappers(1),mismatches(4)	.	.	.	.
TALL_VC010	MAD1L1	MBD2	-/-	-/-	7:2213212	18:54166166	splice-site	splice-site	translocation	upstream	downstream	1	0	0	31	90	low	.	.	.	GGGGCGCCAGGAGAAGATGCAGGAGACGCTGGTTGGCTTGGAGCTGGAGAACGAG___AGGCTGCTGGCCAAGCTGCAAAGCTGGGAGAGACTGGACCAGACCATGGGCCTGAGCATCAG|CTTTTCTGGGAGAAGAGGCTACAAGGACTTAGTGCATCAGATGTAACAGAACAAATTATAAAAACCATGG	out-of-frame	GRQEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIs|fsgrrgykdlvhqm*	.
TALL_VC011	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	24	48	5	245	118	high	.	.	duplicates(3),low_entropy(1),mismappers(1),mismatches(2)	GGTTGTCGC...G___GCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATG??G...GAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATG	.	.	.
TALL_VC011	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	8	9	1	47	77	high	.	.	duplicates(1),low_entropy(1),mismatches(3)	GAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTAC??C	.	.	.
TALL_VC011	NIPBL	ETV6	+/+	+/+	5:36962274	12:11839140	splice-site	splice-site	translocation	downstream	upstream	5	5	2	82	1021	high	.	.	duplicates(2)	GCATCTTCCAATTATCAACAAACCACTATCTCACATAGCCCCTCCAG___CCGGTTTGTGCCACCACAGACAAGCTCTGGGAACAGATTTATGCCACAGCAAAATAGCCCAGTGCCTAGTCCATACGCCCCACAAAGCCCTGCAGGATACATGCCATATTCCCATCCTTCAAGTTACACAACACATCCACAGATGCAACAAG|GCTTGCAGCCAATTTACTGGAGCAGGGATGACGTAGCCCAGTGGCTCAAGTGGGCTGAAAATGAGTTTTCTTTAAGGCCAATTGACAGCAACACaTTTGAAATGAATGGCAAAGCTCTCCTGCTGCTGACCAAAGAGGACTTTCGCTATCGATCTCCTCATTCAG___GTGATGTGCTCTATGAACTCCTTCAGCATATTC	in-frame	ASSNYQQTTISHSPSSRFVPPQTSSGNRFMPQQNSPVPSPYAPQSPAGYMPYSHPSSYTTHPQMQQ|gLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDVLYELLQHI	.
TALL_VC011	NIPBL	ETV6	+/+	+/+	5:36962274	12:11826402	splice-site	splice-site	translocation	downstream	upstream	1	2	6	82	137	high	.	.	.	GCATCTTCCAATTATCAACAAACCACTATCTCACATAGCCCCTCCAG___CCGGTTTGTGCCACCACAGACAAGCTCTGGGAACAGATTTATGCCACAGCAAAATAGCCCAGTGCCTAGTCCATACGCCCCACAAAGCCCTGCAGGATACATGCCATATTCCCATCCTTCAAGTTACACAACACATCCACAGATGCAACAAG|CACAGAATGAAAAGCACCTTTGAAGAATCGTAAGCCATGAATGATGACGGGCCGAAGGGAGTGAGGGCTCCTACCTCTTGTCACTCCTACCATCCTGCCTCCAGGACCCCTGCCACCTACTTGGGAGTCTGCCCTTAAAACTCAAGGGTCACCTGACTCATTCCTCCCCACTCATTCATCTGACTACCCACCAAAGCTAAGTGTGAACAGCCTGTgTTGATTTATCATTTTCCTTTT??C	out-of-frame	ASSNYQQTTISHSPSSRFVPPQTSSGNRFMPQQNSPVPSPYAPQSPAGYMPYSHPSSYTTHPQMQQ|aqnekhl*	.
TALL_VC011	NIPBL	ETV6	+/+	+/+	5:36962274	12:11825644	splice-site	splice-site	translocation	downstream	upstream	0	1	6	82	110	high	.	.	.	GCATCTTCCAATTATCAACAAACCACTATCTCACATAGCCCCTCCAG___CCGGTTTGTGCCACCACAGACAAGCTCTGGGAACAGATTTATGCCACAGCAAAATAGCCCAGTGCCTAGTCCATACGCCCCACAAAGCCCTGCAGGATACATGCCATATTCCCATCCTTCAAGTTACACAACACATCCACAGATGCAACAAG|GTTCTGGGGATTAGGACACGGACATTTCTATTTGGCAGCCAACATTCAGCCATCTCCAGTCACTGAGCTA___CACAGAATGAAAAGCACCTTTGAAGAATCGTAAGCCATGAATGATGACGGGCCGAAGGGAGTGAGGGCTCCTACCTCTTGTCACTCCTACCATCCTGCCTCC??G	out-of-frame	ASSNYQQTTISHSPSSRFVPPQTSSGNRFMPQQNSPVPSPYAPQSPAGYMPYSHPSSYTTHPQMQQ|gsgd*	.
TALL_VC011	ETV6	NIPBL	+/+	+/+	12:11650160	5:36970876	splice-site	splice-site	translocation	downstream	upstream	0	4	1	416	51	medium	.	.	.	AAACTTCTTAAATGACCGCGTCTGGCTGGCCGTGGAGCCTTTCTGGGTTGGGGAGAGGAAAGGAAAGTGGAAAAAACCTGAGAACTTCCTGATCTCTCTCGCTGTGAGACATGTCTGAGACTCCTGCTCAGTGTAGCATTAAG|CATCGGTATCAAGTCCCATTGTTGCAGGTGGTTTGAGAAACATACATGATAATAAAGTTTCTGGTCCGTTGTCTGGCAATTCAGCTAATCATCATGCTGATAATCCTAGACATGGTTCAAGTGAGGACTACCTACACATGGTGCACAGGC	out-of-frame	MSETPAQCSIK|hryqvpllqvv*	.
TALL_VC011	NIPBL	ETV6	+/+	+/+	5:36961583	12:11839140	splice-site	splice-site	translocation	downstream	upstream	2	0	0	138	1021	low	.	.	.	A??TGGTTTCACAGCTTGTCCATAGCCTCAACCAGGTATCAACAGATCACAT___GAATGATGATGTCTCAGTATAAACTTTCTCAGAATTCCATGCACAGTAGTCCTGCATCTTCCAATTATCAACAAACCACTATCTCACATAGCCCCTCCAG|GCTTGCAGCCAATTTACTGGAGCAGGGATGACGcAG	out-of-frame	?VSQLVHSLNQVSTDHMNDDVSV*TFSEFHAQ*SCIFQLSTNHYLT*PLQ|acsqftgagmt	.
TALL_VC011	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	4	1	0	17	32	high	.	.	duplicates(1),low_entropy(2)	AAAAGTAGGTCTGCCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAGGCAAGT??G	.	.	.
TALL_VC011	LINC00921	PLD4	+/+	+/+	16:3263883	14:104937166	splice-site	3'UTR	translocation	downstream	upstream	0	2	0	33	21	medium	.	.	.	GGAAATACGAGATTCAAATATCTGGTGGCCGTGTGAC|AGCTGCTTAGTAGAGACCAGGAGTGTGTGGGAGGAAAGCCCTGGTAAACTTCGACCCTGAGACAGAAGACCTCAGCAGCCTTCAGCATGGGATGCAGCACTTTCTTTATTGCCCATCCAGGGAACAGCCAAGCCAGCTCCATCTGCATTCTGGCTGCAGCGTGTACATTAGGG	.	.	.
TALL_VC011	GATS	GATS	-/-	-/-	7:100211786	7:100227020	3'UTR	intron	duplication	upstream	downstream	0	69	0	1060	400	low	.	.	duplicates(3),mismatches(2)	GTCTGTATCCTGCCGTTCTTCATTTGACTCATCCTGGATTTCTAACTCTTCTTCCTCGTCCTCTTCCATAAGGCTGAGTCTGATGTAG|CTGCTCCTGGCCAGCTGCTGATTGACCTGAAATCCTCCAGCCAGCAGCAGCCGCCTCTTCCCCCACAGCCATGTTTCCAGCTGGTCTCAGGCCTGGGCTTCTCCCCAAGACCACTCTGGGTCTCGTCCAAACCTGCCAAGAGACTCCTAGTGGCAGAGTCTTGGTTATGTCAGCACCCCCTCAAGGTGCATATATGCACCCCAGCACTTCACCACCTCGGAG...___CAGAGCTGCTGCTTTCAGTCCCAGCCTCAGTGCCTGACATCT??G	.	.	.
TALL_VC011	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	0	138	330	low	.	.	duplicates(1),mismatches(1)	C??AGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAtAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGC??A	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC011	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	7	0	46	15	low	.	.	duplicates(1)	CCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTG...CCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATtCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGC	.	.	.
TALL_VC011	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	4	0	22	20	low	.	.	low_entropy(1)	CAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG	.	.	.
TALL_VC011	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	3	2	1	9	6	low	.	.	.	AGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGA	out-of-frame	LFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqk	.
TALL_VC011	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	6	0	51	22	low	.	.	duplicates(1),low_entropy(2)	C??GGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGT	.	.	.
TALL_VC011	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	0	75	113	low	.	.	.	G??TGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATC	.	.	.
TALL_VC011	AC009095.4	SLC12A4	-/-	-/-	16:67616194	16:67955190	5'UTR	intron	deletion/read-through	downstream	upstream	0	0	4	14	13	low	.	.	.	...CAGGCTTTACATAGTATTTCCTTTTATGTGATTTAAACAAATGATTTTCAAACATCCATGTCTAATATGCTGTGATCATTCTGAATGTCAATT...CCAATATAAAACATGAATAATATACTCTCTACATTTCTTGTCTTTCACTGAAGGAATCTTAGAGACAAAACTGAGAGCACAATGCAGTGCTAGTTTCACAGACTAGTGACCATCTGTAATTGTGGG|...CCTTTTGGCCCTAAGGCCCCGCACAGTGCCTGCCACCAGGTGAGTGTCCACGGCTCCCTGCCCTGAATCTGTGCTTCTATCAAAGTCTAACACCCTTAAAAGACTCAGAGAGTCATGACCAGGCCCCAGGGTGACAAGCACAGGGGGACAA	.	.	.
TALL_VC011	PCAT18	KCTD1	-/-	-/-	18:26683388	18:26605266	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	4	5	7	low	.	.	mismappers(2),mismatches(2)	TAAGCACACATCTTCCTTGTTTATCTCTCTCAAAGGAGTGTGGAGTGCTTCATCTGGACATCCACGGGAAGAAGGAAGACATGAG___A...|...ATgAGACCCTCGATTGTAGACAGCCCATGTTGACTCAAgATAAAGACCACATCgCCCAGCTTCCCTTGCAGCTAAGTGAG	.	.	.
TALL_VC011	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	3	1	0	11	10	low	.	.	low_entropy(1)	GATTTATTGAAGCTTTATGTGAAACCTTGTTGCCCAGATATTGATATTTTTGTTGATGGAAAACGTTTTAAAGCTCACAG___GGCCATTTTGAGTGCCAGATCTAGTTATTTTGCTGCAATGCTGAGT...CTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGAC	out-of-frame	ILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaal	.
TALL_VC011	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	1	0	84	11	low	.	.	mismappers(1)	C??GTGATTACACTGTGAAAACCCAGATAAGCCAGGATAATCTCCCTATCTTATTATGAG...CACAATCGACACATCATCACAGCACTGCCTTTTATCCTGGG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGG	out-of-frame	tidtssqhcllswGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC011	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31583149	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	107	7	low	.	.	.	G??AAGTGTGACATGTAACTGAATCGGATGATGGCAACTTTCACTGGGCAGTGAAAG___TTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGGGTGAGAGGCCCTAGAGGCACCCTCAGTGGGCACACATGCATACTCATGCATGTATACACGCATGCTGTGCTGTGGGGCACGTCC??C...GGCTGGGAACCACAGCGCCTTCTGGGGCATGACCCTGGATGAGGGCATTCGCTACCGCCTGGGCACCATCCGCCCATCTTCCTCGGTCATGAACATGCATGAAATTTAT___ACAGTGCTGAACC??G	.	.	.
TALL_VC011	RP11-380M21.2	ZBTB7C	-/.	-/.	18:47853385	18:48276751	exon	intron	deletion	downstream	upstream	0	0	4	84	1	low	.	.	mismatches(4)	.	.	.	.
TALL_VC011	CCND2(3406),C12orf5(12449)	C12orf5	./+	+/+	12:4308756	12:4331280	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	0	7	24	low	.	.	.	CCAGTAAGTCCCAAGTGGAGTCATCCTCCTCCAACCCTCTCCACCACAAACAGACCTGGAATACTTCTTTCAGTTTGTGGACCATAACCTCTCCTTCTCAGACGAAGAAAGACCGTACTGCCTCA|TGGAGAAACAAGATTTAACAAGGAGAAAATAATCCAAG___GACAAGGAGTAGATGAACCTCTTTCAGAAACTGGATTTAAACAAGCAGCAGCTGCTGGTATATTTCTGAATAATGTGAAGTTTACTCATGCTTTCTCCAGTGATCTCATGAGGACAAAGCAG___ACCATGCATGGAATTTTGGAGAGAAGCAAATTTTGCAAAGATATGACaGTAAAGTATGACTCAAGACTTCGGGAAAGG___AAATACGGGGTTGTAGAAGGCAAAGCGCTAAGTGAGCTGAG	.	.	.
TALL_VC011	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69088366	11:69135435	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	1	2	62	6	low	.	.	.	CAGACTTCCGGGGCATTCAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTG	.	.	.
TALL_VC011	RP11-499P20.2	RN7SKP189(4500),CYCSP44(114645)	-/-	./+	10:18513197	X:145061937	exon	intergenic	translocation	upstream	upstream	0	0	3	147	5	low	.	.	low_entropy(1)	G??CTTTCTACATTTGAAGCAAATCGGAAAGGTGAAAAAACTCAATAAGTAGGTGCCTCATGAGCCAAGCAAAAATAAATTGTTGTTTGGAAGCATCTTCTCTTATTCTGTGCAACAACAATGAACCATTTCTCAGTCGGATTGTGACGTGGGACGAAA...|...AAAAAAAAAAAAAAAAAAAAAAAGGTTATGGTCACTGTTTGGTGG	.	.	.
TALL_VC011	AC012501.2	GALNT13	-/+	+/+	2:153510977	2:153732769	intron	5'UTR	deletion/read-through/3'-3'	downstream	upstream	1	2	0	8	7	low	.	.	mismatches(1)	TTTCAACTGAAGAAAATGTTTCTAGAAGGAAAGAGTTACCCAGCAAATACAAGCAGAAGGAGAGAGTGGGCCACTCTGTGGTATCTCGCAATGGAGCAGACACTGTTGGACAAGAGCAGATTCACTGGAGAG|GTAACAAGTTGGAAGACTTTGGATCTCAAGAAAAGTGGATTTTGCCTCTACCGTAGAGATAG___ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCC	.	.	.
TALL_VC011	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	1	0	46	3	low	.	.	.	T??TACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAGGCAAGAAAATTCTGTCTGACCTTTCTGCCGGGAGGAGGGAATGTTTAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCA	out-of-frame	?TPERGFSLRKDGPLDMRMDGGRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL_VC011	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511927	7:23384533	exon	intron	deletion	downstream	upstream	0	0	3	79	4	low	.	.	mismatches(6)	.	.	.	.
TALL_VC011	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	0	3	0	11	10	low	.	.	.	CTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAAT	in-frame	EIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEE	.
TALL_VC011	TEKT4P2	FP236383.9(1824),FP236383.12(1359)	-/-	./-	21:9073259	21:8443864	exon	intergenic	deletion	upstream	downstream	0	0	2	0	770	low	.	.	mismappers(1),mismatches(8)	GTGAAGGTGC...|...GACGCCGCCGGAACCGCGACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCAGGGCGCCCTGCCCTTCACAAAGAAAAGAGAACTCTCCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACGCCTCGCGGCGCC...CCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGGAACGGCGCTCGCCCATCTCTCAGGACCGACTGACCCATGTTCAACTGCT	.	.	.
TALL_VC011	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	1	0	17	78	low	.	.	mismappers(2),mismatches(1)	GCCGCGGTGGCTACCGCCAGCAGgAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACA	out-of-frame	RGGYRQQeSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTFN	.
TALL_VC011	EPB41L5	TMEM185B(5770),RALB(10886)	+/.	./.	2:120170783	2:120229178	intron	intergenic	deletion/read-through	downstream	upstream	0	1	1	4	4	low	.	.	duplicates(1)	.	.	.	.
TALL_VC011	CD99	CD99P1	+/+	+/+	X:2726373	X:2637974	splice-site	splice-site	duplication	downstream	upstream	0	2	0	5304	219	low	.	.	.	GCTGGAGCCATCTCTAGCTTCATTGCTTACCAGAAAAAGAAGCTATGCTTCAAAGAAAATG|GGGAGTTGCCTCGATTCTGATGTGTTTGCTTCGGTGCTCTGTGTATTGTATTCATCCCACTCTTCAATTCATAAACTCTGGAGATTCTTCAATTCACTGGGCAAACCATATGCCTAAGTCTATCCTCTGATGGAGGCTCGTACATGCAAAATCCAATAGCA	out-of-frame	AGAISSFIAYQKKKLCFKEN|gelprf*	.
TALL_VC011	FAM65A	RASGRP2	+/+	-/-	16:67528914	11:64742937	splice-site	splice-site	translocation	downstream	downstream	0	1	0	31	779	low	.	.	.	CGCGACCAGGCCGGGCACCTCCGAGCGCAAGGACAGCGCGAGGTCCGCGCAGCCCAGCGCAGCCAT|GGGTTCGGTCCGAGCCCGGTGGGAGGCTCCCGGAGCGCAGCCTGGGCCCAGCCCACCCCG...GCCTTCG___ATGACTCCGGGAAGGTGCGGGACCCGCAGCTGGTGCGCATGTTCCTCATGATGCACCCCTGGTACATCCCCTCCTCTCAGCTGGCGGCCAAGCTGCTCCACAT___CTACCAACAATCCCGG	.	.	.
TALL_VC013	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	7	4	0	20	17	high	.	.	low_entropy(2),mismatches(1)	AGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCA...CTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCAC...AGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCT	out-of-frame	LFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgep	.
TALL_VC013	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	1	11	0	68	28	medium	.	.	duplicates(3),mismappers(1),mismatches(1)	GCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGGTCCGGGTCCCTGCGGCGGACGGGTCGGATCGTGCTCGTGGCCAG...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCAC	.	.	.
TALL_VC013	FKBP4	RP11-885B4.1	+/-	-/-	12:2796233	12:2771907	exon	exon	deletion/read-through/3'-3'	upstream	downstream	4	2	0	13	9	low	.	.	.	GTGAAGAGAATAGAAACAGTTCAAAACAG___AAAACGGCAGGACGCTGGAGCGAGAAGGGGAAGTCACATGCCACAGGAGAGCCGCTGGAGCAGACGCTTGAGGTCCCCAATAATCTGGTGCAAAGACAGATGCACTTCTGGACCAG|AATGAAGAAGATACCCAGCAGATGTGTGCCAAGATTCTACAAATGGTACATACAG___GTCGGGGTCTCTTCTGAGACGTGACTCAGTGG...___GTGTCCCTGCCGGTACTCATAAACCTTCTATGCCAACCAAGCCAC...___ATATTAAGACAATGAAAAGGAAAACCACAGGCTGGAAGAAAATATTTGCCATACATACATCTGAC	.	.	.
TALL_VC013	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	1	3	0	16	15	low	.	.	duplicates(1)	CCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GTGGAAATATTCT	.	.	.
TALL_VC013	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	66	138	low	.	.	.	ATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAG...GATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAAGGACAAGATGGAGGGCAGTGATTTTGAAAGCTCCGGAGGGCGAGGGTTAAAAA___AAGGCCGtGG	.	.	.
TALL_VC013	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	0	1	1	10	16	low	.	.	mismappers(2),mismatches(2)	CTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTtTTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGAC	.	.	.
TALL_VC013	BRD1	SELO	-/-	+/+	22:49797805	22:50210181	splice-site	splice-site	inversion	upstream	upstream	0	2	0	52	245	low	.	.	.	ATCGGCTTGGAAGAGGCCTCGGGGATGCACCTGCCTGAGCGGCCTGCTGCGGCACCGCGGCGGCCTTTCTCCTGGGAAGACG|GTGACGCGGCGCACGGCGCGGATGGTGGCCGAGTGGCAGTGTGTGGGCTTCTGCCACGGCGTGCTCAACACCGACAACATGAGCATCCTGGGGCTCACCATCGACTACGGGCCCTTTGGCTTCCTGGACAG___GTACGACC	out-of-frame	IGLEEASGMHLPERPAAAPRRPFSWED|gdaahgadggrvavcgllprraqhrqhehpgahhrlralwlpgqvr	.
TALL_VC013	RNF138	RP11-53I6.2	+/+	+/+	18:32113860	18:32037116	splice-site	splice-site	duplication	downstream	upstream	1	0	1	69	65	low	.	.	duplicates(2)	AGAGCATGTCCTGAACGGGCCTTAGACCTTGAAAATATAATGAGGAAGTTTTCTGGTAGCTGCAGATGCTGTGCAAAACAG___ATTAAATTCTATCGCATGAGACATCATTACAAATCTTGTAAGAAGTATCAGGATGAATATGGTGTTTCTTCTATCATTCCAAACTTTCAGATCTCTCAAGATTCAGTAGGGAACAG|ATTCTGCCGTTCCTGTATTGCTACCAGTCTAAAG	in-frame	RACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPNFQISQDSVGNr|FCRSCIATSL	.
TALL_VC013	RIOK3	RBBP8	+/+	+/+	18:23463079	18:23026143	splice-site	splice-site	duplication	downstream	upstream	0	1	0	55	270	low	.	.	.	AAGAATTGCAGTTAGAAGAAGAAGCTGCCGTTTTTCCTGAAGTTGC|GTTATATTAAGGAAGATCTTGATCCTTGTCCTCGTCCAAAAAGACGTCAGCCTTACAACGCAATATTTTCTCCAAAAGGC...AAAGTTGGTACTAAACATTGATTTTTTTGATCTTCTGTAAATGGATTTATAAATCAGTTTTCTATTGAAAATGTTTGTGATATTTTGCTTTTGCACCTTTAAAACAATAAGGCGCTTTCATTTTGC	out-of-frame	ELQLEEEAAVFPEVa|ly*	.
TALL_VC014	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	6	12	0	119	265	high	.	.	duplicates(19),low_entropy(2),mismatches(5)	CGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGC	.	.	.
TALL_VC014	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	19	24	0	327	157	medium	.	.	duplicates(64),low_entropy(4),mismappers(1),mismatches(3)	GGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL_VC014	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	8	26	0	120	293	medium	.	.	duplicates(143),low_entropy(47),mismappers(1),mismatches(18)	AGGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGCAGCAACAATGGCAAACGTGCATC	.	.	.
TALL_VC014	ZNF131	FANCA	+/+	-/-	5:43131670	16:89815984	intron	splice-site	translocation	downstream	downstream	0	2	0	14	23	medium	.	.	.	GAGGAACGATCATGAAATTCTAATACATTTGAGAATCCTAGTGGTATTAAGATTTTCTAGCTAATATAGTTTACATCCCTAGCAT|GGAAGGGTCAAGAGGGAAAAATATAATCCTGAAAGGGCACAGAAATTAAAGGAATCAGCTGTGCGCCTCCTGCGAAGCCATCAGGACCTGAATGCCCTTTTGCTTGAG___GTAGAAGGTCCACTGTGTAAA	.	.	.
TALL_VC014	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	1	0	26	157	low	.	.	duplicates(11),mismatches(1)	GCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATcGCACC	.	.	.
TALL_VC014	RP13-895J2.9(1593),RP13-895J2.10(6819)	GALNT9	./-	-/-	12:132353915	12:132286430	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	31	44	low	.	.	duplicates(16),mismatches(1)	GGGCCACTTCCTGATCAAAATTCGGGATTACTGCTGTAATCACTGCTGGTGGAACGGGGCCACGGACCCTGCCCATGACCGCCTCCCTTGGGGGAAGCCAGACAGAAAAGCCAATTTTCTGTAATCCTTCCTGTCTCTCCAGATGATGTTGAGCTGTGGAGGAGATTAATCAGAACAACACAG|GCCTTGCCAAGCCCATCGGCCTGGTGGAGGGGCCAGGAGGCCTGGGCCAGGGTGGCTTGGCGGCCACCCTGCGTGATGACGGCC	.	.	.
TALL_VC014	EEF1A1P13	TRIO	-/-	+/-	5:14652268	5:14525248	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	133	5	low	.	.	duplicates(3),mismappers(2),mismatches(9)	ATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACgcAAGTAAAATCTGTCGAAATGCACC...CCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATA...|...GGCACAGAGGATCA	.	.	.
TALL_VC014	ADIPOR2	CACNA1C	+/+	+/+	12:1788208	12:2113032	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	129	0	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	TTGGGATACAGCGTATAGGTGCAGCCCTGTCACAACACCAACAGAAGTAGCAGCCTCTGGGTGCAGTCACCCACACCCCAAAGCTGGAAGGATCTGGTTCAACATAGCACAAACCCTTAGGA...|...TAAACATCAC	.	.	.
TALL_VC014	EEF1A1P5	VAV2	+/+	-/+	9:133020561	9:133778615	exon	intron	deletion/5'-5'	downstream	upstream	0	0	2	891	0	low	.	.	duplicates(3),mismappers(3),mismatches(11)	GGTGGTgTTGGTACTGTTCCTGTTGGCCGAcTGGtGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGA...GTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCCGGCTATGCCCC...|...GCTAGGCCCCC	.	.	.
TALL_VC014	STK16	ITK	+/.	+/.	2:219250051	5:157191434	3'UTR	intron	translocation	upstream	downstream	0	2	0	34	4	low	.	.	duplicates(2)	.	.	.	.
TALL_VC014	TUBA4A	ITK	-/-	+/-	2:219250051	5:157191434	3'UTR	intron	translocation/5'-5'	upstream	downstream	0	2	0	34	4	low	.	.	duplicates(2)	CCAGGAAGCATAACCCCAGGGACTTTAAATTGAAGTCCTAGGGTTACTCAGTATAGGGAGGAAATGAGGACCAAAATCCAGGCACAAACTGTTGAAGGA|GCTCTGTCTTGAGATTAATCAAAGCTGATTTAACTCAATTCTAATTTGGTTTCAGTCTTTGCTGCTACTGTCTATCTGAGCTCAGTGTTGATCCTGACGCAGGTTATACACCAGGC	.	.	.
TALL_VC014	HNRNPD	RASGEF1B	-/-	-/-	4:82354190	4:81891536	exon	intron	deletion	upstream	downstream	0	0	2	369	0	low	.	.	duplicates(1),low_entropy(6),mismappers(1),mismatches(7)	GGGATAACTCAGTTTTATGTAAATTTTTGTTAAGTGTTGTAGCCTGCC...|...TGTAGCCTCCC	.	.	.
TALL_VC014	HNRNPA0	SPOCK1	-/-	-/-	5:137753101	5:137378992	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	2	1646	0	low	.	.	.	GGGGCGGTCGCAGTAATAGTGGACCTTACAGAGGCGGCTATGGCGGTGGGGGTGGCTATGGAGGCAGCTCCTTCTAAAAGAAAATTTAAAATGCCTGGGAGTGGCTATAGGGGTAGCTCTTTCCA...|...TTTCAAACAGCC	.	.	.
TALL_VC014	CAMSAP1	ATP11A	-/.	+/.	9:135820929	13:112806049	CDS	intron	translocation	downstream	downstream	0	0	2	29	16	low	.	.	duplicates(1)	.	.	.	.
TALL_VC014	TRAF3	TNFAIP2	+/+	+/+	14:102893919	14:103132854	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	3	1049	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	GCAGAGATATT...|...GCAGGGCTGTTTCCGGGAG___GAGCTCATGGAGGCCTTGCACCTGCACCTGGTGAAGGAGTACATCATCCAACTCAGCAAG	.	.	.
TALL_VC020	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	8	17	1	88	57	high	.	.	duplicates(2),mismatches(1)	CTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGG...___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACggAATTggAAACACcGGG	out-of-frame	MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL_VC020	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	7	7	2	88	44	high	.	.	duplicates(1),mismatches(1)	AAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTT	out-of-frame	KYVDTPFGKPSDALILGKIKNVDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL_VC020	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	3	4	1	88	122	medium	.	.	duplicates(1)	AAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGgTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGGAGATCTATTTGGAATGTATCTA	out-of-frame	KYVDTPFGKPSDALILGKIKNVDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDs|vpfdeknkphsdstaeikektsvfwppdicylclkn*	.
TALL_VC020	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	7	5	0	35	41	high	.	.	low_entropy(2),mismappers(1),mismatches(2)	GCCTGCTTCCCTCCGCCGCGCTCCCCCCTCCTTTTTTTTATTTGCATCTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTG___...TGTT...___...TTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCAC	.	.	.
TALL_VC020	MTAP	CDKN2A	+/+	-/+	9:21818202	9:21994151	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	3	7	0	88	26	high	.	.	duplicates(1),low_entropy(1)	AAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCCGTGAGCCGCGGGATGTGAACCACGAAAACCCTCACTCGCGGCGGGCCGCACGCGCGCCGAATCCGGAGGGTCACCAAGAACCTGCGCACCATGTTCTCGCCGCCTCCAGGGCCGAGCTCGGCAGCCGCTGCGCCGCCCTTTGGCACCAGAG___ATTTGGAAAAC...TTCaTtgACAGGCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAA	out-of-frame	KNVDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|krllp*	.
TALL_VC020	RGPD2	PLGLB1	-/-	-/-	2:87772169	2:87017688	splice-site	splice-site	deletion	upstream	downstream	1	1	0	172	15	high	.	.	duplicates(2)	CACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTCAAGGAGAGCCCCTGGATGACTATGTGAATACCCAGGGGCCTTCACTGTTCAGTGTCACTAAGAAGCAGCTGGGGGCAGG...AATATCACAGTAAAGAGCAACAATGTGTGATAATGGCTGAAAACAGGAAGTCCTCCATAATCATTAGGATGAGAGATGCAGTTTTATTTGAAAAGTAAA___TGTATCTTTCAGAGTGCAAGACTGG	in-frame	HLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|gQGEPLDDYVNTQGPSLFSVTKKQLGA	.
TALL_VC020	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	10	22	6	82	56	medium	.	.	low_entropy(2),mismatches(2)	GCGTGTCCAGAATTGGTGGGTCTCACTGACTTCAAGAATGAAGCCGCGGACCCTCCTG___GCGGAATTCTCCACGAGTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG...AGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGC	.	.	.
TALL_VC020	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	5	2	0	408	106	medium	.	.	duplicates(1),mismappers(3),mismatches(1)	CCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAG	.	.	.
TALL_VC020	MTAP	UBA52P6	+/+	+/+	9:21818202	9:22012128	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	3	0	88	10	medium	.	.	.	GGAAGATAAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTC...AGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|CGAGGCAGCCGAGCTGCAGACACAGAGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGAC...GATGGCCGCACTCTCTCAGACTACAACGTCCAGAAACAGCCCACCCCGCACCTGGTGCTGCACCTGCGAGGTGGCATTATTGAGCCTTCACTCTTCCAGCTCACCTAGAAATACAaCTGAAACAAG	out-of-frame	EIQPGDIVIIDQFIDs|eaaelqtqrcrsl*	.
TALL_VC020	CD1B	CD1C(1408),CD1B(32913)	-/-	./-	1:158329852	1:158295038	splice-site	intergenic	deletion/read-through	upstream	downstream	2	5	0	801	11	low	.	.	mismatches(1)	GTCAAGAATGCTTCATGTGTGCCTTCCCCAGAAGGTGGCAGCAGGGCACAGAAATTCTGTGCACTAATCATACAATATCAAGGTATCATGGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|GTCACAGGGTGACTAAGGGTGCAGGAGAGTCACCTAGGGCCTCCTGGTGCCAAGGAAATGAGCAATGGAAGCAGGACCCAAGCTGG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCTGGGCAATGGAATGTGTGGTGTTGG	out-of-frame	VKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQRQ|ghrvtkgagespraswcqgneqwkqdpswercncpis*	.
TALL_VC020	PTEN	MED6P1(140376),RP11-129G17.2(68930)	+/+	./+	10:87864624	10:88190199	exon	intergenic	deletion/read-through	downstream	upstream	2	2	2	251	401	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	CAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGAAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCTGTATCCATTTCTGCGGCTGCTCCTCTTTACCTTTCTGTCACTCTCTTAGAACGTGGGAGTAGACGGATGCGAAAAT|ATTTTCAACTGGTGGTCTGCTGTGATGCAGAGGAACTGCTTCATTCTTTCAATCCCTCAGACCTGGACTTCTCATTCACCATCTGTTCTGATCTTGGCGACCTGCCTGAGACTTTGAGCCACATTTGAATCCTTGGCTGTTCTCTTCTGCTGCCTACACCCTGGCCTGACCCAGAGAACTTC	out-of-frame	MTAIIKEIVSRNKRRYQEDGFDLDLTcihfcgcsslpfchslrtwe*tdaki|fstggll*	.
TALL_VC020	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	2	3	0	18	19	low	.	.	low_entropy(1)	CTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGAC	.	.	.
TALL_VC020	STIL	TAL1	-/-	-/-	1:47314036	1:47224098	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	18	39	low	.	.	duplicates(2),mismatches(1)	CCCGCAGTTCTCCAAGAAGACTTGGGATTGGTCGAGCGCGGAACCAGTGCGGGGCGCTGATTGGTtGGCACACCAATACGTAACGGCGACCGTGCGCGGCTCTCTAGCACCACCCCCGCTCCCTG...CGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAGCAGAATGTGAACGGGGCCTTTGCCGAGCTCCGCAAGCTGATCCCCACACATCCCCCGGACAAGAAGCTCAGCAAGAATGAGAaCCTCCGCCTGGCCATaAAGcATATCAtCTTCTTGGCaAAGCTGCTCtATGACCAGGAtGAtGAGGGtACCgAGaGGGCCAAGACTGGCAAGG	.	.	.
TALL_VC020	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	18	27	low	.	.	duplicates(1)	CCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCC...CATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGGGGCGGCGCCGCGAGAGACTTAAAGGGCCGCGACGCGGCGACGGCCGAAGCGCGCCATCGGGTGCCCACCACCGAG	.	.	.
TALL_VC020	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	1	128	248	low	.	.	low_entropy(1)	GGCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC020	SERF1B	SMN2	+/+	+/+	5:70041631	5:70065965	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	18	170	low	.	.	read_through(1)	CAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAA	out-of-frame	QSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSs|ml*	.
TALL_VC020	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	18	248	low	.	.	read_through(4)	GCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATC...CTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTG...CTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTAC	out-of-frame	LTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC020	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	2	1	15	9	low	.	.	mismappers(1)	AGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAG	.	.	.
TALL_VC020	TMSB15B	TMSB15B(10272),H2BFWT(34163)	+/+	./+	X:103962723	X:103976984	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	1	26	162	low	.	.	duplicates(2),low_entropy(1)	CGGGAAGGCTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AAACCTTCCTTCCTTCCAGATGTGTGTCAGTAGAATTACAGAGTGTCCACGGAAACAGCTCATGCCCTAGTGTACAGTGGTGCAGCCAATGAGTGACCTGAAGTCTATGAGCAACACTCATTGTCCCAATGTGGGACGAGTGACCGAAGCTGAACCCACAACAGCCTTCCTGTGATATTCCACGTGGTGGTTAAAGGCATGGCGATG...AGAATATTAGAAAAATATTATGAAAATAGTTGAAGAGAAATGTTATGAAAATAGTTGAAGCTGTACTTACTGCACAAGGAGACCAAGAAAAAC	.	.	.
TALL_VC020	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	1	0	45	9	low	.	.	duplicates(1),mismappers(2)	GTCAAAAAAGTTTATTAGAAAACTAGAAGCTTTCCATTTAGTAGGCAGCACCAGTGGATGTAATGAAAATGATAAATCATTCTCAAATTATATTTGTTACACATTAGGGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATaCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAG...GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAAC	out-of-frame	skkfirkleafhlvgstsgcnendksfsnyicytlGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC020	RP11-231C14.4	RP11-345J4.3(2068),RP11-345J4.1(5163)	-/-	./-	16:29488035	16:29469901	3'UTR	intergenic	deletion/read-through	upstream	downstream	4	0	0	53	25	low	.	.	.	TGGAAACTCGGTTCATACCAGCCATTCTAGGGGTGGGGTGAGTTGTTGTCATCCTTAGGAAAGTGTGTTGTTGTAGGATCAACCACATCCTTCAAAAGGACTATGCCTGTTTATAAGCCCAGCTGTTTCTGCC|CTGAGCTTTCTGGAATTTTGCTCCCTTGCCCTGGTGGCTGAGTGTGGGGTGTGTGGAGCTGTTGTCTGCCCTGAGGGTGTG	.	.	.
TALL_VC020	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	2	0	21	40	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	GGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACATTCTCTTCTGCACAAGTTGCCTTTGTGTGAGTATACTAACTTTCTGTAGAGGTATACTTGTAATCACAA	out-of-frame	GYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTFNILFCTSCLCvsiltfcrgilvit	.
TALL_VC020	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	1	173	106	low	.	.	low_entropy(1)	AGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAG...AGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAGGTATTACTTGGCTTATGGCAGCATAACTCCTATCTCTGCC	.	.	.
TALL_VC020	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	3	0	27	14	low	.	.	low_entropy(2),mismatches(2)	CCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGaAAGAATTCCAAG___AAAAGCCgGAGTTGGTA	.	.	.
TALL_VC020	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	3	0	25	4	low	.	.	.	TGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCC	.	.	.
TALL_VC020	RP11-1023L17.1	C1QTNF3	-/-	-/-	5:34169067	5:34043043	exon	CDS	deletion/read-through	upstream	downstream	0	0	3	45	3	low	.	.	mismappers(1),mismatches(1)	TGCCGATTTCATGACTAACCAGT___CCAAGGATGAAGGAAACACTGGACCTCATTATGGATTTACTTTTGGGATACACTCATCATTCCAGAGGAGGGTAAAAGGCTGAGAAGCTTAAG___TTCTGCAGGCTGGAAATCCAAGATGAAGTCACCTGTAGTTCAGTGTCTGCGTCTAAGAGAGTACTTTGTTGCTGCACCCGCCAGAGG...|...AG___TCTCCACAAACCGGAGGACTACCCCCAGACTGCAGTAAGTGTTGTCATGGAGACTACAGCTTTCGAGGCTACCAAGGCCCCCCTGGGCCACCGGGCCCTCCT	.	.	.
TALL_VC020	RPIA	ANKRD36BP2	+/+	+/+	2:88729337	2:88782734	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	228	355	low	.	.	.	CTCCAACAGCATCTGCCCGGCCCCCTCCACGATGTCCAAGGCCGAGGAGGCCAAGAAGCTGGCGGGCCGCGCGGCTGTGGAGAACCACGTGAGG___AATAACCAAGTGCTGGGAATTGGAAGTGGTTC...GAGAATCTGAACCTCGTCTGTATTCCCACTTCCTTCCAG___GCCCGCCAGCTCATCCTGCAGTATGGCTTGACCCTCAGTGATCTGGATCGACACCCAGAG|TGTCTTCTCAGAAACAACCAGCTGAGAAG___GCTGCAAGTGACGAGAAAGATTCTGTTTCGAATATAGCCACAGAAATAAAGGAGGGACCAATATCTGGGACAG___TGTCTTCTCAGAAACAACCAGCTGAGAAG___GCTGCAAGTGACGAGAAAGATTCTGTTTCAAAT...ATATTTAAAAAGAAAGTTTCTCTTTTGAATATTGCCACAAGAATAATGGGTGGTCAGAAATCTGGAACAG___AGTATCCTGAGAATCTGCCCACCATGAAG___GCTACAGTTGAAAATAAAGATTCTG	out-of-frame	ENLNLVCIPTSFQARQLILQYGLTLSDLDRHPE|cllrnnqlrrlqvtrkilfri*	.
TALL_VC020	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	0	1	9	56	low	.	.	duplicates(2)	CCGGCACCCAGACAGGTGGCGACGGCAGAGGA___GAAGGAAAATACATGTACAGCCAACTTCCTTGAGGGTTCGTTCTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCC	.	.	.
TALL_VC020	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	1	0	27	6	low	.	.	mismappers(1)	CAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAAC	out-of-frame	GTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL_VC020	GYPE	RP13-578N3.3	-/-	+/-	4:143876746	4:143841053	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	0	1	1	15	1	low	.	.	mismappers(1),mismatches(1)	CAGaAATTGTGAGCATATCAGCATCAAGTACCACTGGTGTGGCAATGCACACTTCAACCTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATG___GGATAACACTCATTAATTGGTG...CTTGTTGTTGTTGGAATGATCATCTTAATTTCTTACTGTATTCGATGACTGATAAAG|AAAGAGCATGCTCCCTGTGTTGATGCAGTCGCCCCCCTCCCGGGCTTTGTTCTACACATGGATGTAACCTGCC	out-of-frame	LVVVGMIILISYCIR*lik|kehapcvdavaplpgfvlhmdvtc	.
TALL_VC020	PPFIBP1	KIAA0930	+/.	-/.	12:27611176	22:45194574	intron	3'UTR	translocation	downstream	downstream	0	0	2	2	16	low	.	.	.	.	.	.	.
TALL_VC020	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	0	4	3	low	.	.	duplicates(1)	AACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGG	out-of-frame	PRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL_VC020	ARHGAP27	NBEAL2	-/-	+/+	17:45402714	3:46995032	splice-site	splice-site	translocation	upstream	upstream	0	1	0	106	78	low	.	.	.	TGAGTACACAGTGGAGCTGAGGGGGGCCACTCTCTCCTGGGCCCCCAAAGACAAATCCAGTAGGAAGAATGTGCTGGAG|GCTGTGGAGGGTGACCACAGCATGTGCCCACCTCCACCAATCCGCAACGAGCAGCCGGTACTGGTGCTGGCGCAGTGGCTGCCGTCATTGCCCACCGCTGAGCTGCGGCTCTTCCTAGCGCAACGCCTCAG	in-frame	EYTVELRGATLSWAPKDKSSRKNVLE|AVEGDHSMCPPPPIRNEQPVLVLAQWLPSLPTAELRLFLAQRL	.
TALL_VC020	TBC1D22A	ZNF444	+/+	+/+	22:46878723	19:56158494	splice-site	splice-site	translocation	downstream	upstream	0	1	0	87	177	low	.	.	.	CGGAGGTTGAGCTGGTCCGGAATCCCTAAGCCAGTGCGTCCAATGACGTGGAAGCTCCTCTCA|GGGCCAGCAGCCTCCCCCGATGGGTCGTCAGCAACGAGGGTGCCTCAGGATGTGACGCAGGGCCCTGGGGCCACAGGTGGAAAGGAGGACAGTGGGATGATTCCCTTAG___CAGGCACCGCCCCTGGGGCTGAGGGGCCGGCGCCTGGGGACTCCCAGGCTGTGCGCCCCTACAAGCAGGAGCCCAG	in-frame	RRLSWSGIPKPVRPMTWKLLS|GPAASPDGSSATRVPQDVTQGPGATGGKEDSGMIPLAGTAPGAEGPAPGDSQAVRPYKQEP	.
TALL_VC021	TPST1	TYW1	+/+	+/+	7:66292624	7:67183126	intron	splice-site	deletion	downstream	upstream	1	3	0	11	26	high	.	.	duplicates(1),low_entropy(1)	GCGGGCGCCCCTCCCCCAGCCTCGtTGCCGCCcTGCAGTTTGATCTCAGACTGCTGTGCTAGCAATCAGCGAGAcTCCGTGGGgGTAGGACCCTCTGAGCCAGGTGTGGGATATAGTCTCGTGGTGCGCCGTTTCTTAAGCCgGTCTGAAAAGCGCAATATTcGGGTGGGAGTGACCCGATTTTCCAG|CAACAACGAACTGTCTACAGACTGACGCTCGTGAAAGCATGGAAtGTGGACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGaAATCCTGACTTCATCGAAGTGAAG___GGCGTTACCTACTGCGGAGAAAGTTCAGCAAGCAGTCTTACCATGGCCCACGTGCCC	.	.	.
TALL_VC021	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	6	11	0	129	43	medium	.	.	duplicates(16),low_entropy(3),mismatches(6)	GCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATG	.	.	.
TALL_VC021	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	2	0	48	11	low	.	.	duplicates(2)	GGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAaGGCCC	.	.	.
TALL_VC021	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	2	2	0	7	7	low	.	.	duplicates(1),low_entropy(1),mismatches(2)	GAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGG	.	.	.
TALL_VC021	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	0	3	0	20	15	low	.	.	duplicates(3),mismappers(1),mismatches(1)	ACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAG	out-of-frame	TGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseep	.
TALL_VC021	DIS3	VN1R92P(5983),LLNLF-18A12.1(28590)	-/-	./-	13:72761648	19:23451172	CDS	intergenic	translocation	upstream	downstream	0	0	2	47	3	low	.	.	.	GGGGCTGACTGTACTTATCCAGAGTTGACAGACAAACACAAGCTTGCAGATATATGTAAAAATCTAAATTTCCGGCACAAAATGGCTCAATATGCCCAACGTGCATCAGTGGCTTTTCATACCC...|...GCACTTGTATCCTGTAACTTAAAGTAAAATTTAAAAAAAGAAACTGAACTCCTTCCTTACAGCATATACAATAATCAACTCAAGATGGTTTAAAGACTAAAATGTAAAACCCCAAACTATAAAAA	.	.	.
TALL_VC021	TIMP2	RBFOX3	-/.	-/.	17:78860855	17:79190135	intron	intron	deletion/read-through	downstream	upstream	0	0	2	10	6	low	.	.	duplicates(1),mismappers(1)	.	.	.	.
TALL_VC021	RP11-205M5.3	MACROD1(14448),STIP1(4718)	+/+	./+	8:37860888	11:64180554	exon	intergenic	translocation	downstream	upstream	0	2	0	57	10	low	.	.	.	GCTGTAGATAATTAAAAGCTAATTAGATAAATCAAGTTACAGTATCATCCTTCAGATTAAAGTGCTCTGATATAACCAATGCCACAGCAAACGAA|ATCCTGTTCCCAGTTCACATGGTCCTTAACCCTTGGGAAGGGCTCTGATCCACTGTGTGCCATGGCTGCTGCTGAGCTGGCCTCACCTCAGTGGTCCCCTGAAATACAGAGTCTCTCCTCCCGCCCCCTAACCCAAC	.	.	.
TALL_VC021	LINC01535	GPR63(16543),NDUFAF4(35307)	+/+	./+	19:37257136	6:96854006	exon	intergenic	translocation	downstream	upstream	0	0	2	5	5	low	.	.	.	G___GTCCAGATTTTGGATGAATCTCTATAGAGATTGAACAGATAAGGCTCACCTTTCAATAGTTACACCAAGAAAGGCCTAGGTGGTGACTTAAGCTATGGTTTTGGGCAGCACGAGAGTGGTCAGGT...|...AGTACCAACATATACCTGAGGCCATAGTGCAGAGCCTTTAGAACCTGGCTTTTCCCTCTTCAAAAGTGAAAGGTGTATGAACTATCTTAAACTTGGAAACTAGGAATGATCATGCATCTCTAACAC	.	.	.
TALL_VC021	ESYT2	PTPRN2	-/-	-/-	7:158731428	7:158491638	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	2	404	1	low	.	.	low_entropy(1),mismappers(1)	GGCGGATGACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGAGAAACCCCATCTTTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGGAGtGCACGCCTGTAGTCCCAGCTACT...|...GCACGCCTGTAGTCCCAGC	.	.	.
TALL_VC022	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	3	10	1	84	35	high	.	.	duplicates(6),mismatches(1)	GTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___CCATCTCAGCCTCAGCCTGGTACTGAACGCTTGCCAGAGAGGT...___GCAATTTATAGCAC...AG___ATATTGAGAAACCACAGAAAGAGAGAAGTTAAATAATTTTCCTGTCAAAGACCACATCAATGATGAAGCCAGAATTTGAGCTC	out-of-frame	VNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL_VC022	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	3	7	1	84	24	high	.	.	duplicates(8),low_entropy(1),mismatches(2)	GGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATaGCT___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCT	out-of-frame	GRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL_VC022	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	1	84	56	medium	.	.	duplicates(3)	GTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGgTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGG	out-of-frame	VNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDs|vpfdeknkphsdstaeikektsvfwppdicylclkn*	.
TALL_VC022	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	4	7	0	27	99	high	.	.	low_entropy(2),mismappers(1),mismatches(1)	GGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGtCCCC	.	.	.
TALL_VC022	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	6	16	0	110	46	medium	.	.	duplicates(13),low_entropy(1),mismappers(1),mismatches(3)	GGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACC...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAG	.	.	.
TALL_VC022	MTAP	CDKN2A	+/+	-/+	9:21818202	9:21994151	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	1	4	0	84	10	medium	.	.	duplicates(4)	AGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCCGTGAGCCGCGGGATGTGAACCACGAAAACCCTC	out-of-frame	REEIQPGDIVIIDQFIDr|krllp*	.
TALL_VC022	TDG	TMEM132B	+/.	+/.	12:103965852	12:125316602	5'UTR	intron	inversion/3'-3'	upstream	upstream	0	2	1	63	2	medium	.	.	.	.	.	.	.
TALL_VC022	HBG1	HBB	-/-	-/-	11:5249751	11:5226967	CDS	CDS	deletion/read-through	upstream	downstream	0	22	0	28	1387	low	.	.	duplicates(109),low_entropy(9),mismappers(38),mismatches(17)	GAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAGAGGAGGACAAGGCTACTATCACAAGCCTGTGGGGCAAG|GTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGCAG___GCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCC...GCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAGG___CTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCAC...AATTTCTAgTAAAGGTTCCTTTGTTaCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGA	in-frame	MGHFTEEDKATITSLWGK|VNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN	.
TALL_VC022	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	6	0	22	23	low	.	.	duplicates(6),mismappers(4),mismatches(3)	GCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGA	.	.	.
TALL_VC022	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	5	0	76	30	low	.	.	duplicates(6),mismatches(1)	GGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCC	.	.	.
TALL_VC022	GFRA4	ATRN	-/-	+/-	20:3663354	20:3649255	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	5	0	0	222	82	low	.	.	duplicates(5),low_entropy(4),mismatches(1)	AGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|GCTCTCTTGTGACGCGCAACACTGCCAGATGACAACCAATTCCTTCTTGGAAACAGGCTgCGAGCCCAGCGCCTCTTACTCCCTGCC	out-of-frame	MVRCLGPALLLLLLL|gslvtrntar*	.
TALL_VC022	APOD(30676),AC069213.1(66)	MUC20	./.	+/.	3:195614881	3:195720943	intergenic	5'UTR	deletion/read-through	downstream	upstream	2	0	2	17	13	low	.	.	duplicates(4),low_entropy(1),mismappers(5)	.	.	.	.
TALL_VC022	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	4	0	25	24	low	.	.	duplicates(1)	GTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGG	.	.	.
TALL_VC022	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	3	0	18	23	low	.	.	duplicates(2),mismappers(6),mismatches(4)	CCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGAT	.	.	.
TALL_VC022	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	1	33	23	low	.	.	duplicates(2),mismappers(1),mismatches(2)	GGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGG	.	.	.
TALL_VC022	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	135	23	low	.	.	mismappers(1),mismatches(4)	CCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAG?TAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCC	.	.	.
TALL_VC022	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	30	23	low	.	.	duplicates(1),mismappers(1),mismatches(2)	AGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGC	.	.	.
TALL_VC022	HIVEP3	YBX1	-/+	+/+	1:41916455	1:42697224	intron	CDS	deletion/3'-3'	downstream	upstream	0	4	0	5	10814	low	.	.	duplicates(13),low_entropy(11),mismappers(7),mismatches(10)	CAGGAGGGCCCCT|GCAGAATATGTATCGGGGATATAGACCACGATTCCGCAG___GGGCCCTCCTCGCCAAAGACAGCCTAGAGAGGACGGCAATGAAGAAGATAAAGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTACCGACGCAGACGCCCAGAAAACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTCCCGAGGC	.	.	.
TALL_VC022	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	0	0	37	10	low	.	.	duplicates(2),mismatches(1)	GGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGG	out-of-frame	GAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC022	SNX29	CTD-3037G24.5(2523),CPPED1(42424)	+/.	./.	16:12534435	16:12617375	intron	intergenic	deletion/read-through	downstream	upstream	2	1	0	14	5	low	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(2)	.	.	.	.
TALL_VC022	PLCD3	AC108022.1(38857),RP11-9D8.1(524)	-/-	./-	17:45113603	4:37820837	CDS	intergenic	translocation	upstream	downstream	0	0	2	1	2	low	.	.	.	GGCAG___GGAACAGCTTTGTCAGGCACAATGCCCGCCAGCTGACCCGCGTGTACCCGCTGGGGCTGCGGATGAACTCAGCCAACTACAGTCCCCAGGAGATGTGGAACTCGGGCTGTCAGCTGG___TGG...|...ACAAAACCGCCATCGTCATCATGGCCCGTTCTCAATGAGCTGTTGGGTACACCTCCCAGACGGGGTGGTGGCAGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCTGGGCAGAGGTGCCCCC	.	.	.
TALL_VC022	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	10	129	low	.	.	low_entropy(1),mismappers(1)	CTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGG	out-of-frame	LVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC022	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	52	129	low	.	.	.	GTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCC	in-frame	VWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTA	.
TALL_VC022	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	46	129	low	.	.	.	GCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGAC	out-of-frame	AGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL_VC022	RABL6	EXD3	+/+	-/+	9:136914365	9:137309415	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	2	1	low	.	.	mismappers(1),mismatches(1)	GGGCAGCCTGGGGGACTTGTCTCCTCGCTTCCAGCAGTGCCTTCTCCCACACCTACCCTACCTGGGCGATCGCACCCCCCATTCCCAGCATGacGCGCACATGCCcGGTTCCTGGCCTCTTCTCC...|...GTACCTGACC	.	.	.
TALL_VC022	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	0	0	330	20	low	.	.	duplicates(4),mismappers(1),mismatches(1)	AGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGA	.	.	.
TALL_VC022	EXOSC8	TRIM22	+/+	+/+	13:37000822	11:5708173	splice-site	splice-site	translocation	downstream	upstream	0	2	0	105	593	low	.	.	duplicates(2)	GCcGGgGCAGACGCGCGGGCGGGAAGATGGCGGCTGGGTTCAA|GAGTGAAAGCTGGACATTGAAGAAGCCAAAATCTGTTTCCAAGAAACTAAAGAGTGTATTCCGAGTACCAGATCTGAGTGGGATGCTGCAAGTTCTTAAAG___AGCTGACAGATGTCCAGTACTACTGGG	in-frame	MAAGFk|SESWTLKKPKSVSKKLKSVFRVPDLSGMLQVLKELTDVQYYW	.
TALL_VC023	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	9	20	0	177	65	medium	.	.	duplicates(25),low_entropy(2),mismappers(2),mismatches(5)	CCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACC...___TG	.	.	.
TALL_VC023	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	1	5	0	21	75	medium	.	.	duplicates(4)	GTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...CTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTG	.	.	.
TALL_VC023	PIGX	PRLR	+/+	-/-	3:196639875	5:35089663	splice-site	splice-site	translocation	downstream	downstream	0	3	0	305	22	medium	.	.	duplicates(2)	AAGGAGGTAGCCCAGCCCCGCGTTCGGCTGCTCTCGAGGAGGCCGGAGtCCCCGGAGACGATGCGCCCCGCGCAGCCGCCTGCGCCTGCGGGAGCC|TGAACTTCTGATACATTTCCTGCAGCAAGAGAAGGCAGCCAACATGAAGGAAAATGTGGCATCTGCAACCGTTTTCACTCTGCTACTTTTTCTCAACACCTGCCTTCTGAATG___TTCAGCCAGACCCTCCTTTGGAGCTGGCTGTGGAAGTAAAACAGCCAGAAGACAGAAAACCCT	.	.	.
TALL_VC023	NRROS	PRLR	+/+	-/-	3:196639875	5:35089663	splice-site	splice-site	translocation	downstream	downstream	0	3	0	305	22	medium	.	.	duplicates(2)	AAGGAGGTAGCCCAGCCCCGCGTTCGGCTGCTCTCGAGGAGGCCGGAGtCCCCGGAGACGATGCGCCCCGCGCAGCCGCCTGCGCCTGCGGGAGCC|TGAACTTCTGATACATTTCCTGCAGCAAGAGAAGGCAGCCAACATGAAGGAAAATGTGGCATCTGCAACCGTTTTCACTCTGCTACTTTTTCTCAACACCTGCCTTCTGAATG___TTCAGCCAGACCCTCCTTTGGAGCTGGCTGTGGAAGTAAAACAGCCAGAAGACAGAAAACCCT	.	.	.
TALL_VC023	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	1	0	1	6	75	medium	.	.	duplicates(4),mismappers(1),mismatches(2)	CCGGCCCCTCCCCGGGCTCCACGCCGCGGGCAGtGCGCACCGCtCAGGGACGCCCCGGCTGCTCCtTGCCGCCCCGCAGAATCCCGGGGCcCCccCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTC...CCGCGGGCCATGCTGGaCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCT	.	.	.
TALL_VC023	MLEC	ARHGEF7	+/-	+/+	12:120693490	13:111275532	intron	splice-site	translocation/3'-3'	upstream	upstream	0	2	0	24	118	medium	.	.	.	GTTGTGTGTTTTTTTTATAATTTTCATTCAAAAAGTTCCAAAGCTGTAAACAAAAACAGGCTCA|GCCCAATGTCAAGAAGTCCGGAAGAGGAAAGAGCTTGAGCTGCAGATCCTGACGGAAGCCATCCGGAACTGGGAGGGCGATGACATTAAAACTCTGGGCAACGTCACTTACATGaCCC	.	.	.
TALL_VC023	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	6	0	127	22	low	.	.	duplicates(6)	GGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCC	.	.	.
TALL_VC023	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	3	0	0	46	46	low	.	.	duplicates(1)	CGACCGTGCGCGGCTCTCTAGCACCACCCCCGCTCCCTGACTGGCGAGGTTTCTGACCAGTCAGCAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCC...GCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGG	.	.	.
TALL_VC023	STIL	TAL1	-/-	-/-	1:47313847	1:47229351	intron	splice-site	deletion/read-through	upstream	downstream	1	1	0	8	31	low	.	.	duplicates(3),mismatches(1)	CCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG___GAGCCTGGAGCAGATGACGAGAAGGGGAGCTAGTGGGAGAAATTAAGCAGTCCATGAAATCCTTGGGTATCATCTGAGCTAAG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGG	.	.	.
TALL_VC023	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	46	31	low	.	.	duplicates(10),mismatches(2)	GGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGtCGGTCTCTCTAAtTtTGCtCC	.	.	.
TALL_VC023	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	48	90	low	.	.	duplicates(1),mismatches(1)	GGCGGGAAGGCTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGCAAGAGAGAAAGTGAATACGCTGATATAAGAAGCAAG___AAACCT?CCTTCCTTCCAGtTGTGTGTCAG	.	.	.
TALL_VC023	AC013463.2	SCN2A	+/+	+/+	2:165195199	2:165295773	exon	splice-site	deletion/read-through	downstream	upstream	1	1	0	32	29	low	.	.	duplicates(7),mismappers(1)	GGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___GGATTGTAGCAACCAAACTGCTGAAGACTGGCGTGGTCTGTCTGTCTTCACCCTCCAGAGGATAGAGGACCTG|CACTTTCTTATGCAAGGAGCTAAACAGTGATT?AAGGAGCAGGATGAAAAGATGGCAC	.	.	.
TALL_VC023	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69079020	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	32	8	low	.	.	duplicates(2)	GTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGAcGAAGTTGTGAGTCACATACATCCC	out-of-frame	LEMLLKVFALGLRGYLSYPSNVFDGLLTVVLL|*	.
TALL_VC023	DAZAP1	SBNO2	+/+	-/-	19:1407802	19:1154402	splice-site	splice-site	inversion	downstream	downstream	0	1	0	551	64	low	.	.	.	CGGgGCGGGTGACCTTCCGGAGGCGGGAGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|ATCATGATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCGGGTCCTGGAGTCCCGCCGCCTGCTGCCCGGCCGAGGACCCCACCCCGCC	out-of-frame	MNNSGADEIg|s*	.
TALL_VC024	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	4	6	2	141	157	high	.	.	duplicates(93),mismappers(1),mismatches(3)	AGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAAtCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCcGGA	out-of-frame	RGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL_VC024	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	5	15	0	151	322	medium	.	.	duplicates(226),low_entropy(18),mismatches(7)	GGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACC	.	.	.
TALL_VC024	TIPRL	HSD17B12	+/.	+/.	1:168201808	11:43607312	3'UTR	intron	translocation	upstream	downstream	0	1	1	25	5	medium	.	.	duplicates(3)	.	.	.	.
TALL_VC024	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	4	0	76	62	low	.	.	duplicates(32),low_entropy(1),mismappers(1),mismatches(1)	GCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAG	.	.	.
TALL_VC024	RCBTB2	LPAR6	-/-	-/-	13:48501742	13:48389812	splice-site	splice-site	deletion/read-through	upstream	downstream	2	1	0	70	32	low	.	.	duplicates(29),mismappers(1)	CACGTGGCGCCTCCTCTCCGTGG___AACCTGATGACCACCTCACAGTGGCTGAGTCACTGAAGAGGGAATTTGACAACCCGGACACTGCAGACCTGAAGTTTCTAGTTGATGGAAAGTACATTTATGCACATAAAGTCCTTCTCAAGATTCG|GTGAAAACTCCAAAGCTTAACATTCTAACCACTCTAGGGAGGGAGGATGGGAGGAAGAGAGCTGAGTGTGCACCAAGGAGCGG	out-of-frame	TWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIr|*	.
TALL_VC024	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	0	33	66	low	.	.	duplicates(17),mismatches(1)	GGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCC	.	.	.
TALL_VC024	OSBPL5	KCNQ1	-/-	+/-	11:3098319	11:2793840	intron	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	2	0	low	.	.	.	GCTGATTGAAGGTTTTTGTTTGTTTGAATTATTTGAACCTGAGGTTTCGTGGCTTTGATGAAGTCCAGAAAATTTTAGCCATTTTTTTTAAGTGCCTCACTCCTGATTTCTCCATTTTTCCTAGA...|...GCCCAGCCATGGGG	.	.	.
TALL_VC024	ZSCAN18	SAFB2	-/-	-/-	19:58085097	19:5588225	CDS	intron	deletion	upstream	downstream	0	0	2	213	71	low	.	.	duplicates(11)	CCCGGACCCGCAGGACCCCCAGGACGCGGAGTCCGACTCTGCCACCGGATCGCAGAGGCAGTCCGTCATCCAGCAGCCTGCCCCGGACAGGGGCACGGCGAAACTGGGAACCAAGAGGCCGCACCC...|...GGGGGAGGTAGCATCTCGGTGTGGCTCGGATTGGCATTTCTGGGTGGCGTTGAGCACCTTCTCACGTGCTTACTAGCACATCTGTCTTTGGGGAAATGTCCCTTCCCTTGATTTGCCCA	.	.	.
TALL_VC024	XXbac-BPG299F13.17	ABHD16A	-/.	-/.	6:31197234	6:31694387	exon	intron	deletion	downstream	upstream	0	0	2	19	7	low	.	.	duplicates(5)	.	.	.	.
TALL_VC024	C9orf171	EEF1A1P5	+/.	+/.	9:132522513	9:133019571	intron	exon	deletion	downstream	upstream	0	0	2	0	2292	low	.	.	duplicates(5),low_entropy(3),mismappers(1),mismatches(6)	.	.	.	.
TALL_VC024	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	20	18	low	.	.	duplicates(16)	CCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGG	.	.	.
TALL_VC024	SHD	TBL2	+/+	-/-	19:4290641	7:73575076	3'UTR	intron	translocation	downstream	downstream	0	0	2	105	44	low	.	.	duplicates(5)	GCGGGCCCTTCCCCAGCGTGCCCGAGCTCGTCCTCCACTACAGTTCACGCCCACTGCCGGTGCAGGGTGCCGAGCATCTGGCTCTGCTGTACCCCGTGGTCACGCAGACCCCCTGACAGTGACC...|...GCAGGGCCGCTAGAGATGGTTGTGCACATTACTCCCTACATAGGGATGTCTGGCCAAGGATCCACACTCCACTGGCCGTGCTGTGTACCCGCCCAGCAGCATCACCCAACCC	.	.	.
TALL_VC024	NIT2	ZNF250	+/+	-/-	3:100354794	8:144881573	CDS	CDS	translocation	downstream	downstream	0	0	2	310	17	low	.	.	duplicates(8)	GCCG___GGCTGTTGATAATCAGGTGTATGTGGCCACAGCCTCTCCTGCCCGGGATGACAAAGCCTCCTATGTTGCCTGGGGACACAGCACCGTGGTGAACCCTTG___GGGGGAGGTTCTAGCCAAAGCTG...|...GTGCCTTCAACCAGCATGGCCACCTAATCCAGCACCAGAAAGTGCACAGAAAGTTGTGACCCATGGCTGACACAAGAATCCATTCTCACAGAAACTGCATGTGGAACCACAAGCAGCCTTCAGC	.	.	.
TALL_VC024	XXbac-BPG299F13.17	XXbac-BPG32J3.20	-/.	-/.	6:31197234	6:31694387	exon	intron	deletion	downstream	upstream	0	0	2	19	7	low	.	.	duplicates(5)	.	.	.	.
TALL_VC025	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	13	0	97	139	high	.	.	duplicates(27),low_entropy(3),mismappers(1),mismatches(8)	GGGCCGGCCGGCGTGTGCGTTGCCGCAACCCCGCGTGGGTTCCACAAAAGGCGGCCCCGAGTCTCCGGGTCACG___...GGGTT...___...CTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCC	.	.	.
TALL_VC025	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	8	0	95	39	medium	.	.	duplicates(10),mismappers(2),mismatches(2)	GGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCG	.	.	.
TALL_VC025	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	4	0	17	139	medium	.	.	duplicates(3),low_entropy(1),mismatches(2)	GGGCCATGCTGGaCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCC	.	.	.
TALL_VC025	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	4	1	0	14	13	low	.	.	mismappers(1)	CAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAG	.	.	.
TALL_VC025	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	231	618	low	.	.	duplicates(1),low_entropy(1)	GGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGAT...CATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGgAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfg	.
TALL_VC025	FCRL5	HDGF	-/-	-/-	1:157532514	1:156743830	3'UTR	CDS	deletion	upstream	downstream	0	3	0	2	762	low	.	.	duplicates(21),low_entropy(10),mismappers(5),mismatches(9)	AAGAAgAggAGgatGAGGAAGGAGAGGAA|AAGGAGGCAGCCACCTTGGAGGTTGAGAGGCCCCTTCCTATGGAGGTGGAAAAGAATAGCACCCCCTCTGAGCCCGGCTCTGGCCGGGGGCCTCCCCAAGAGGAAGAAGAaGAGGAGGATGAAGAGGAAGAGGCTACCAAGGAAGATGCTGAGGCCCCAGGCATCAGAGATCATGAGAG___CCTGTAGCCACCAATGTTTCAAGAGGAGCCCCCACCCTGTTCCTGCTGCTGTCTGGGTGCTACTGGGGAAACTGG	.	.	.
TALL_VC025	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	3	0	21	15	low	.	.	duplicates(1)	GTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGC	.	.	.
TALL_VC025	PCSK7	DSCAML1	-/-	-/-	11:117229835	11:117464843	CDS	intron	deletion/read-through	downstream	upstream	0	0	2	136	0	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	...GGGAGGCAGAAAGTGCCACACTTGGATGCCCCCCTGGGCCTGCCCACCTGCCTCTGGCTGGAATTAGCCGGGCTCTTCTTACTGGTTCCCTGGGTCATGGGC...GGGCTGTGCACCTGGAAAGCCTGGAAGGTGACGGGGAGGAAGAGACTCTGGAGCAGCAGGCGGATGCCTTGGCCCAGGCAGCAGGGCTGGTGAATGCTGGACGCATCGaAGA|...GCCCAGGGGC	.	.	.
TALL_VC025	TSHR	CEP128	+/-	-/-	14:80976280	14:80916562	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	1	1	0	11	59	low	.	.	duplicates(4),low_entropy(1),mismappers(1),mismatches(1)	ACAGGGGTCAGACTACTCCCTAAGTTACCTCTTTCAAGCTTCTCCTCAGGAAGACAGGCCCACTGGAATCCTGGATAACCTGTTCCCCAAAG|GATTTGTGTACATCAATGGCAGAATCATCCAGCGAATCAGATCACTTCCGCTGTCGTGACCGATTGAGTCCATGGGCTGCCAGATCAACGCcCA	.	.	.
TALL_VC025	C17orf75	LINC00399(87653),LINC00676(238988)	-/-	./-	17:32339868	13:109489294	CDS	intergenic	translocation	upstream	downstream	0	0	2	50	5	low	.	.	.	AGGACGGAAGCCCAAGTGGCACAAATGCAGAAACTCCCTCTGGTGATGATTTCAG___CCTCTCCTTGGCAGATACTAATCTACCATCCGAAGTGGAGCCAGAGCTGCGCAGTTTCATTGCTAAGCGTC...|...GGCGGTCATGCTGTCTGcGATCTGACAGGAGGCGGAGCTCAGGCGGTCATGCTGTCTGGGATCTGACAGGAGGCGGAGCTCAGGCGGTCATGCTGTCTGGGATCTGACAGGAGGCGGAGCTCAGGC...GGAGGCGGAGCTCAGGCGGTCATGCTGTCTGGGATCTGACAGGAGGCGGAGCTCAGGCGGTCATGCTGTCTGGGATCTGACAGGAGGCGGAGCTCAGGC	.	.	.
TALL_VC025	PKN1	BRD4	+/+	-/+	19:14462374	19:15250122	intron	intron	deletion/5'-5'	downstream	upstream	0	0	2	9	3	low	.	.	mismappers(1)	GACCAGCCTGGCCAACGTGGAAAAACCTAGTCTCTACTAAAAATACAAAAATCAGCCAGGTGTGGTGGCGCACGCCTGTAATCCCAGTTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTG...|...GGGAAAAACCCGCCC	.	.	.
TALL_VC025	XXbac-BPG299F13.17	ABHD16A	-/.	-/.	6:31197234	6:31694387	exon	intron	deletion	downstream	upstream	0	0	2	22	2	low	.	.	.	.	.	.	.
TALL_VC025	GNB2L1	ZFYVE16	-/-	+/+	5:181243286	5:80443123	splice-site	splice-site	inversion	upstream	upstream	0	1	0	55	19	low	.	.	.	GGCGGTGATGACCCCAACATGCCATCTGAGTGTCGGTGCTGAAATCCAGAGGCTGTTTCTGAGCTGCCGCCCGGCCCAAGGCTCGTGGGGAG|CTCAGGCATTTGAAAGGATGATGAGTCCAACTGGTTCTAATCTTAAGTCTAATCATTCTGATGAATGTACTACTGTCCAGCCTCCTCAGGAGAACCAAACATCCAGTATACCTTCACCAGCA	in-frame	AVMTPTCHLSVGAEIQRLFLSCRPAQGSWG|aQAFERMMSPTGSNLKSNHSDECTTVQPPQENQTSSIPSP	.
TALL_VC028	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	5	6	1	81	86	high	.	.	duplicates(32),mismappers(1),mismatches(2)	GGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGC...GATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCC	out-of-frame	LANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpse	.
TALL_VC028	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	2	9	0	80	289	medium	.	.	duplicates(118),low_entropy(20),mismappers(1),mismatches(4)	GCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCtGGTACCAGTAaCAGTACTTCCACCAGCACTAaCTCAAGCAGCAAC	.	.	.
TALL_VC028	FP236383.8	bP-2189O9.2(105672),MIR3648-1(351)	+/+	./+	21:8391168	21:8986648	exon	intergenic	deletion	downstream	upstream	204	0	0	1126	421	low	.	.	duplicates(205),low_entropy(1),mismappers(29),mismatches(39)	AGGCGGTTCTCGGTGGGGGCCGAGGGCCGTCCGGCGTCCCAGGCGGGGCGCCGCGGGACCGCCCTCGTGTCTGTGGCGGTGGGATCCCGCGGCCGTGTTTTCCTGGTGGCCCGGCCGTGCCTGAG|GTTTCTCCCCGAGCCGCCGCCTCTGCGGGCTCCCGGGTGCCCTTGCCCTCAC...___GCCCGTCTGTGCCCTCTTCCCCGCCCGCCGCCCGCCGATCCTCTTCTTCCCCCCGAGCGGCTCACCGGCT	.	.	.
TALL_VC028	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	1	6	0	99	36	low	.	.	duplicates(17)	GCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAG	.	.	.
TALL_VC028	STK40	IPPK	-/-	-/-	1:36339969	9:92634215	3'UTR	intron	translocation	upstream	downstream	0	0	2	184	24	low	.	.	duplicates(4)	GGGCTGGGGGATGCCCTCTTTTCTATATTTATTTCATAGAAAGTCTCCTGCGGGAGCGGAAATGCAGTCCGGCCTAGGGCTCCCAGCCCTTGACTGTCCTCCTGTGAGGGCCTGAAGCTGGGCC...|...GGTGGTGCATTGAGGTTTTAAGGGGAATTTCCCTTGGTTGAGTTCTGCCCTGGCCCGTTCCTGGTGGGGTCAGGCCCCAGGGGCGGCCGATCTGCAACCCATCTGCATGCCTTCTCAGCAGCCCAC	.	.	.
TALL_VC028	PPIL2	RRN3P1	+/+	-/-	22:21694648	16:21818912	CDS	intron	translocation	downstream	downstream	0	2	0	88	47	low	.	.	.	ATGGAGAATGTGGAGAGTGACCCCA|GGAGGGATTGTTGGTTAAGAGTGGAAGCAGGGAGACCAGTAAAGAGGCCTTAACAATAGTCCCACTGAATTATGTTGGTTCAATAAAGGTTGGCTATTAT...TTTTCAATTCTCCCCCAAGAAAAACTGTTCGGTTTGGTGGAACTGTGACAGAAGTCTTGCTGAAGTACAAAAAG___GGTGAAACAAATGACTTTGAGTTGTTGAAGAACCAGCTGTTAGATCCAGA	out-of-frame	MENVESDP|rrdcwlrveagrpvkrp*	.
TALL_VC050	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	38	68	13	274	155	high	.	.	duplicates(14),low_entropy(6),mismappers(2),mismatches(10)	G___...CGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGA	.	.	.
TALL_VC050	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	5	5	1	23	44	high	.	.	mismappers(1),mismatches(2)	GCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTG...GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCC	.	.	.
TALL_VC050	KMT2A	CBL	+/+	+/+	11:118482495	11:119284969	splice-site	splice-site	deletion	downstream	upstream	3	3	0	53	27	high	.	.	duplicates(1),low_entropy(1),mismappers(2)	AGGACCGCCAAGAAAAGAAGTTCCCAAAACCACTCCTAGTGAGCCCAAGAAAAAGCAGCCTCCACCACCAGAATCAG___GTCCAGAGCAGAGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG|GTGGAACGGCCGCCTTCTCCATTCTCCATGGCCCCACAAGCTTCCCTTCCCCCGGTGCCACCACGACTTGACCTTCTGCCGCAGCGAGTATGTGTTCCCTCAAGTGCTTCTGCTCTTGGAACTGCTTCTAAG___GCTGCTTCTGGCTCCCTTCATAAAGACAAACCATTGCCAGTAC	in-frame	GPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEK|VERPPSPFSMAPQASLPPVPPRLDLLPQRVCVPSSASALGTASKAASGSLHKDKPLPV	.
TALL_VC050	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	4	1	0	20	29	high	.	.	low_entropy(1),mismatches(1)	G??GGCCTCACTTCCAGGTGGAAGCAATAAAAGTAGGTCTGCCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGcATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAGtCA	.	.	.
TALL_VC050	RIC8B	TSPAN19	+/+	-/-	12:106815304	12:85068015	splice-site	5'UTR	inversion	downstream	downstream	0	1	1	15	2	high	.	.	.	GGTAGACAGTTGGAAGGTGCATAAAGAG|CATCATCACGCTGGCAATAATGCAGAAGTAACCTGAGTCGCATTTCAGTGGGTAGAAGAGGGAAGTTGGGTGATAAGAG___AATCATCAATATCTTGGAAGAAAAAGAATGTTAAGAAATAACAAAACAATAATTATTAAGTACTTTCTTAATCTCATTAATGGAGCTTTCTTG___GTTCTTGGACTTTTATTCATGGGATTTGGTGCATGG	out-of-frame	VDSWKVHKE|hhhagnnaevt*	.
TALL_VC050	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	7	8	0	228	467	medium	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(1)	GGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGC...TGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC050	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	19	467	low	.	.	duplicates(1),read_through(5)	A??AAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAG	out-of-frame	?KTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC050	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	2	7	2	24	203	medium	.	.	duplicates(2),low_entropy(2)	GTGGCGACGGCAGAGGA___GAAGGAAAATACATGTACAGCCAACTTCCTTGAGGGTTCGTTCTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATA	.	.	.
TALL_VC050	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	5	4	1	28	30	medium	.	.	duplicates(1),low_entropy(2)	CTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGC	out-of-frame	LFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtl	.
TALL_VC050	GOLGA8T	GOLGA8UP(11244),HERC2P10(2168)	+/+	./+	15:30145307	15:30813103	splice-site	intergenic	deletion	downstream	upstream	5	2	0	1053	262	medium	.	.	.	GGgAAAtCCATCACCTTTTATCAGAACCAGGGGGCTGTGCCAAAGATGCGGCACTGGGAGGAGGACACCATCAGGCTGGAGCTCAGGGAGGAGATGAAG___GTGAAGCTGCTGGAGCTGCAGCAGATGGTATTGCGGCTTACAGCAACTACAACAATGGGCACAGAAAATTCCTGGCCGCTGCCCACAACCtTGCTGATGAGCCCGGTCCAGGAGCCCCAGCTCCCCAGGAGCTTGGGGCTGCAGACAAGCATGGTG|CTATGAAACCCACGTAGTCGGACACCCTGATGCTTCTCCTGtAGGGCGTGTGATGAGGAGGTGAGCTTGGCTTTGGAGTGCTGGGAACCTGAGGAATTGCCAAG...___AGTCATGCAAGACCG??G	out-of-frame	eiHHLLSEPGGCAKDAALGGGHHQAGAQGGDEGEAAGAAADGIAAYSNYNNGHRKFLAAAHNlADEPGPGAPAPQELGAADKHG|amkpt*	.
TALL_VC050	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	2	0	458	50	medium	.	.	duplicates(1),low_entropy(1),mismappers(3)	CGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGC...CCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAG	.	.	.
TALL_VC050	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510593	7:22322123	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	8	2082	3	low	.	.	low_entropy(6),mismappers(2),mismatches(33)	ATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTG...|...ACCCCAAAAAC??G	.	.	.
TALL_VC050	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	2	5	0	24	16	low	.	.	duplicates(1)	TTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAACTGTGAGACATGCACTTGCTACGAAACAGAAATTTCATGTTGCACC??G	.	.	.
TALL_VC050	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	7	0	95	20	low	.	.	duplicates(1),low_entropy(1)	AAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCAtCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCC	.	.	.
TALL_VC050	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	4	1	0	181	172	low	.	.	low_entropy(3),mismappers(1),mismatches(2)	G??AATGTGTAGTAAGTAACTGGCCTCTTTAGTATCACAAAGCTGGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAG	.	.	.
TALL_VC050	LHFPL1	HMGB3P30(25785),AMOT(58198)	-/.	./.	X:112671842	X:112716305	intron	intergenic	deletion/read-through	downstream	upstream	2	1	1	11	28	low	.	.	duplicates(1),low_entropy(1),mismappers(2)	.	.	.	.
TALL_VC050	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	1	2	1	36	89	low	.	.	low_entropy(1)	CTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCA??T	.	.	.
TALL_VC050	EEF1A1P13	ANKH	-/-	-/-	5:14652862	5:14728029	exon	intron	deletion/read-through	downstream	upstream	0	0	4	2435	0	low	.	.	low_entropy(3),mismatches(19)	...GGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAA...TGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAG|...TAAATTCCCCCA	.	.	.
TALL_VC050	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	125	234	low	.	.	duplicates(1),low_entropy(1)	CAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAA??C	out-of-frame	KNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC050	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69084016	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	54	12	low	.	.	duplicates(2),low_entropy(2),mismappers(1),mismatches(1)	GATTGCCACACCCAGGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGACATGACCCGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG___CcGATGGCCGTGGTGGCCAGTACCGTCCTGGGCCTGGTGCAGAACATGCGTGCtTTTGGCGGGATCCTGGTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAA??G...ATGAACTTGGAACCATCCATCTAGTGGAAATTGT-AATTATAACAAAACCCAATGGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCCCTGTCATCGAGGGAGTTTTTGTG??G	out-of-frame	LPHPGWRPEMVGLLSLWDMTRMLNMLIVFRFLRIIPSMKpMAVVASTVLGLVQNMRAFGGILV|*	.
TALL_VC050	AC108004.3	RPH3AL	-/-	-/-	17:413129	17:327579	splice-site	splice-site	deletion/read-through	upstream	downstream	3	0	0	23	15	low	.	.	.	TGACGGTGGAGGAGTCAGAAGGGAGGTGCTTCTTTTCCACTTTGCTCTGTCTGTGCTCTGGTTTCGGGCCACGCTCTTTGCAAGGACTTAAGATGTCATGAAAGGAGGAAGAAAGCGGCTGGCTCTTCAGGCTCTGACTCTGATGTTTATCTGCTGAGTAGATGAGCAG|ATGTGACTCCCCACCCCCAGCCGGGTGCTCCGAGCCATGGCCGACACCATCTTCGGCAGCGGGAATGATCAGTGGGTTTGCCCCAATGACCGGCAGCTTGCCCTTCGAGCCAA___G	.	.	.
TALL_VC050	AC108004.3	RPH3AL	-/-	-/-	17:413979	17:327579	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	29	15	low	.	.	.	GTCAGAGTGTAGAAGCTTTGGGGTAAGGTTTCCTTCAAAACAGAGATTGGGGCACTCGGCTTTCGACGTGGGCTGCCTGTGGCTGGAGCTGCCATCTTTGTCCGAGAGGTAGG|ATGTGACTCCCCACCCCCAGCCGGGTGCTCCGAGCCATGGCCGACACCATCTTCGGCAGCGGGAATGATCAGTGGGTTTGCCC	.	.	.
TALL_VC050	RBM27	CTC-359M8.1	+/+	-/+	5:146271674	5:146356534	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	2	1	0	144	5	low	.	.	duplicates(1),mismappers(1)	GCCGAGGGCGTGGAGGAAGAGGAAGGGGCTCACTAAATCACATGGTGGTGGACCATCGTCCCAAAGCACTAACAGTTGGAGGATTCATTGAGGAAGAAAAAGAAGACTTGCTTCAGCATTTCTCA|AGGAAGTTAACAACTGGAGAGGAAGGTGTGTGTTCCTGGCAACCAAACTAGACCACTTCACTAATGGAGCCACTCCCTCTGTCTCCCTGCTGGC??C	out-of-frame	RGRGGRGRGSLNHMVVDHRPKALTVGGFIEEEKEDLLQHFS|rklttgeegvcswqpn*	.
TALL_VC050	RP11-449H3.3	CTC-359M8.1	+/+	-/+	5:146271674	5:146356534	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	2	1	0	144	5	low	.	.	duplicates(1),mismappers(1)	GCCGAGGGCGTGGAGGAAGAGGAAGGGGCTCACTAAATCACATGGTGGTGGACCATCGTCCCAAAGCACTAACAGTTGGAGGATTCATTGAGGAAGAAAAAGAAGACTTGCTTCAGCATTTCTCA|AGGAAGTTAACAACTGGAGAGGAAGGTGTGTGTTCCTGGCAACCAAACTAGACCACTTCACTAATGGAGCCACTCCCTCTGTCTCCCTGCTGGC??C	out-of-frame	RGRGGRGRGSLNHMVVDHRPKALTVGGFIEEEKEDLLQHFS|rklttgeegvcswqpn*	.
TALL_VC050	C21orf33	C21orf33(10352),AP001055.6(2665)	+/+	./+	21:44140342	21:44156075	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	458	13	low	.	.	.	ACCTGGCCAACCTCAGTGCAGCCAACCATGATGCTGCCATCTTTCCAGGAGGCTTTGGAGCGGCTAAAAACCT___GAGCACGTTTGCCGTGGACGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG|GCCTTCTGGAACCTTCCAGGGCCCTGTTGCTCCCACTACTTCTTCTGAGGGCGTGCCTACCACGTGCTGGCTCTGTACGTATTTTACCTCATTTAGCAGTTGCTGCAGATGTGCATTGTAGCCGTATCGGAAACCCAGCGCTGCTGTGGCAAAAAATCACCACACCCCAAACCAGCAGAGATTCgCC	out-of-frame	LANLSAANHDAAIFPGGFGAAKNLSTFAVDGKDCKVNKEVERVLKEFHQAGKPIg|psgtfqgpvapttssegvpttcwlctyftsfssccrcal*	.
TALL_VC050	CHFR	ANKLE2	-/-	-/-	12:132836707	12:132755133	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	1	1	14	266	low	.	.	duplicates(1),low_entropy(1),mismatches(3)	G??AAGGTCTGATGAGCTGATGAGCCGTCCCCTGGGCTTGAAATCTTTCCCGCGGCACAAACAGGCGCCCCTTCCTCTGTCGCTCACTTTTCACGGTTGTCTCCTTCTGAGGCG|GTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGGATTGAAATGTGGACCCATTAC...AAGGCTGTCTTCTTTCTACCACCATGAGGCAGGTGTCACAGCTCTCAGCCAGGACCCACAAAGGATTTTGAAGCCAGCTGAAGGGAACCCAACTGATCAGGCgGGTTTTTCTGAAG	.	.	.
TALL_VC050	GOLGA8N	RYR3	+/+	+/+	15:32606776	15:33500810	3'UTR	intron	deletion	downstream	upstream	0	0	3	1429	0	low	.	.	low_entropy(1)	TTTAATGTCTGTAGGAAGAATCAAAACACCTATTTAAAGATGGCAATATATAATAATaATTTTAAAAGTATTTGATTCAACCTAATTTTCCAGAAATGAAAAAAAAAAAATCAGtTCTAAAACCA...|...GAGGTGGGAGTT??G	.	.	.
TALL_VC050	MYRIP	RP11-761N21.2	+/.	+/.	3:40041935	3:40761654	intron	exon	deletion	downstream	upstream	0	0	3	27	368	low	.	.	mismatches(4)	.	.	.	.
TALL_VC050	EEF1A1P9	INTS12	+/+	-/+	4:105486074	4:105769772	exon	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	91	1	low	.	.	mismatches(3)	CTATGCCCCTGTATTGGATTGCCACACGaCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGAtTGATCGCCgTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTG...CTTTGGGTCGCTTTGCTGTTCATGATATgAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCT...|...TTGAGACAAGGCCTCA??C	.	.	.
TALL_VC050	GOLGA8N	FMN1	+/+	-/+	15:32605033	15:32789302	3'UTR	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	910	0	low	.	.	low_entropy(1),mismatches(1)	TGTTTTAATCACAgGACTACATGCCCCAGTACACAAAAGGGCACTGGTTGGCATTCTTCTTAATGTATTTAGTGAAGATCATAAGAAATCCTTTACGAGTTCAAATGTCCCTGGAACAGGCATAC...|...GGAGATACG	.	.	.
TALL_VC050	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	54	124	low	.	.	.	G___GAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCC	.	.	.
TALL_VC050	GRAP2	SGSM3	+/+	+/+	22:39947166	22:40383804	CDS	intron	deletion	downstream	upstream	0	0	3	149	4	low	.	.	mismatches(2)	TAACTCGGTGTCAAAGCCAAGACATAAACTCAACCCCTTCTCTTCCAccAG___CTTCACGTTACAGCATGGAAGCTGTTGCCAAGTTTGATTTCACTGCTTCAGGTGAGGATGAACTGAGCTTTCAC...|...GAGACACAGAA??C	.	.	.
TALL_VC050	XXbac-BPG299F13.17	XXbac-BPG32J3.20	-/.	-/.	6:31197234	6:31694388	exon	intron	deletion	downstream	upstream	0	0	2	52	3	low	.	.	mismappers(1)	.	.	.	.
TALL_VC050	XXbac-BPG299F13.17	ABHD16A	-/.	-/.	6:31197234	6:31694388	exon	intron	deletion	downstream	upstream	0	0	2	52	3	low	.	.	mismappers(1)	.	.	.	.
TALL_VC050	EEF1A1P9	TBCK	+/+	-/+	4:105485882	4:106218674	exon	intron	deletion/5'-5'	downstream	upstream	0	0	2	21	1	low	.	.	low_entropy(1),mismappers(1),mismatches(3)	CAAAAAtGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGcGCcGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGAtTGATCGCCgTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGT...|...CATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACtGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTgTACgCTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGG	.	.	.
TALL_VC050	RHOH	AC195454.1	+/+	+/+	4:40197300	4:40326710	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	233	2	low	.	.	mismappers(1)	G___TTCTTCCAGTGTGAATCAGTTAATATTCTCGGGAACGAGGGAGAGGTTGATCCTATGAGGAAATCAACCACAGTGAAAAGGCTTGGGCCGCTTTTGTTTTCACCTGCTTTTGTTGAACAAATTTGATTTCCGGAGTCAGTCATTTTACTGTCAAGACATTTCTTCGGCATTCTGCAACAG|GCTCCAATATGGCTCAGAAAGGCACTGAGAAAACCTAGCCTTAGCTAGGCTAAGAGCCTAGCTTCTGGCCTGGCTTTTACGTGGTCAGCGGATGTGCGTCCATCCCCC	.	.	.
TALL_VC050	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	2	0	0	250	28	low	.	.	low_entropy(1),mismappers(1)	CGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwcc	.
TALL_VC050	RBBP8	RIOK3	+/+	+/+	18:23007252	18:23472004	intron	intron	deletion	downstream	upstream	0	0	2	1	17	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	ATTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACC...|...GGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAAtCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCATGCACGTGTAATCCCAGCTACTCAAG	.	.	.
TALL_VC050	TEC	FRYL	-/.	-/.	4:48139962	4:48586203	intron	intron	deletion	downstream	upstream	0	0	2	120	3	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL_VC050	ZBTB40	USP33	+/+	-/-	1:22502441	1:77701471	splice-site	splice-site	inversion	downstream	downstream	0	1	0	31	207	low	.	.	.	AACACAGCTGAGACCTATTATGGAGTCCCTGGAAACAGCCAAGGAGGAATTCCTGACTGGCACTGAAAAAAGG|CTTAACAGAGCGTTCCAAAAAGAGGACTCTCCAGCTACTTTTTATTGCATCAGTATGCAGTGGTTTAGAGAATGGGAAAGTTTTGTGAAGGGTAAAGATGGAG___ATCCTCCAGGT	in-frame	TQLRPIMESLETAKEEFLTGTEKR|LNRAFQKEDSPATFYCISMQWFREWESFVKGKDGDPP	.
TALL_VC050	MIR181A1HG	USP33	-/-	-/-	1:198937226	1:77713281	splice-site	splice-site	deletion	upstream	downstream	1	0	0	175	331	low	.	.	.	GAGTGACTTTATGAAGCACTTTCTACCTTCCTCTCCGGCATGAAAACAGGGATTCTGCACCTGCATCATGGACAGTCTGGCAAAAGCCTCTGCTCTGCCTCCGGGGACAAGAAACTAGAGCAAATAACCGTTTTGAAATT|GTGTTCCTCCAAGAAAAGCTGGTTATATTGAAGACCTGGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTATATAGCAG___GTATGGTGGAG	.	.	.
TALL_VC050	LEPROTL1	SARAF	+/+	-/-	8:30104486	8:30074055	splice-site	splice-site	inversion	downstream	downstream	0	1	0	866	1381	low	.	.	.	CGGGCATTGTCGTGTCAGCTTTTGGACTCCCTATTGTATTTGCCAGAGCACATCTG|ACAGAATGTTGCTGCGGGATGTAAAAGCTCTTACCCTCCACTATGACCGCTATACCACCTCCCGCAGGCTGGATCCCATCCCACAGTTGAAATGTGTTGGAGGCACAGCTGGTTGTGATTCTTATACCCCAAAAGTCATACAGTGTCAGAACAAAG	out-of-frame	GIVVSAFGLPIVFARAHL|tecccgm*	.
TALL_VC050	LEPROTL1	SARAF	+/+	-/-	8:30095528	8:30070059	splice-site	splice-site	inversion	downstream	downstream	0	1	0	536	1850	low	.	.	.	CGCCGCCTCGGGTCGTGGAGCCAGGAGCGACGTCACCGCCATGGCAGGCATCAAAG|TGGGAATGTAAGACGGACTTAGATATTGCATACAAATTTGGAAAAACTGTGGTGAGCTGTGAAGGCTATGAGTCCTCTGAAGACCAGTATGTACTAAGAGGTTCTTGTGGCTTGGAGTATAATTTAGATTATACAGAACTTGGCCTGCAGAAACTGA	out-of-frame	MAGIK|vgm*	.
TALL_VC058	ATM	ACAT1	+/+	+/+	11:108259075	11:108128643	splice-site	splice-site	duplication	downstream	upstream	9	7	12	134	56	high	.	.	duplicates(16),mismatches(1),small_insert_size(1)	AGAATCTCAAGGAATCACTGGATCGCTGTCTTCTGGGATTATCAGAACAGCTTCTGAATAATTACTCATCTGAG___ATTACAAATTCAGAAACTCTTGTCCGGTGTTCACGTCTTTTGGTGGGTGTCCTTGGCTGCTACTGTTACATGGGTGTAATAGCTGAAGAGGAAGCATATAAGTCAGAATTATTCCAGAAAGCCAAG___TCTCTAATGCAATGTGCAGGAGAAAGTATCACTCTGTTTAAAAATAAGACAAATGAGGAATTCAGAATTGGTTCCTTGAGAAATATGATGCAGCTATGTACACGTTGCTTGAGCAACTGTACCAAG___AAGAGTCCAAATAAGATTGCATCTGGCTTTTTCCTGCGATTGTTAACATCAAAGCTAATGAATGACATTGCAGATATTTGTAAAAGTTTA|GTGGGGGGAATCAGATCCTGTTTGTATGCTTATGGAATTATCCAGAAGTAAAAGGGGTGAATGATGTAGAGGAGAAGGAAGGGATAACTGTGCCATCTTTGAAAAGGCAACTGGAAATGGGATCCAGAGTAAAGTGGAGAGAACCAGGGAAGATTCCATTAAACTGGACCAGAAGCTTGAAAGAAGAGAAGTGGCTTAGTAAACAAGGAACAAACTAGCTAAGTAGAAAGGGGACTTTTAAAATTTAATTTTTATTTCAATAGGCTTTTGGGAACAGG	out-of-frame	NLKESLDRCLLGLSEQLLNNYSSEITNSETLVRCSRLLVGVLGCYCYMGVIAEEEAYKSELFQKAKSLMQCAGESITLFKNKTNEEFRIGSLRNMMQLCTRCLSNCTKKSPNKIASGFFLRLLTSKLMNDIADICKSL|vggirsclyaygiiqk*	.
TALL_VC058	ATM	ACAT1	+/+	+/+	11:108259075	11:108131907	splice-site	splice-site	duplication	downstream	upstream	4	6	5	134	384	high	.	.	duplicates(5)	GTGTCCTTGGCTGCTACTGTTACATGGGTGTAATAGCTGAAGAGGAAGCATATAAGTCAGAATTATTCCAGAAAGCCAAG___TCTCTAATGCAATGTGCAGGAGAAAGTATCACTCTGTTTAAAAATAAGACAAATGAGGAATTCAGAATTGGTTCCTTGAGAAATATGATGCAGCTATGTACACGTTGCTTGAGCAACTGTACCAAG___AAGAGTCCAAATAAGATTGCATCTGGCTTTTTCCTGCGATTGTTAACATCAAAGCTAATGAATGACATTGCAGATATTTGTAAAAGTTTA|GAAATAAGATATGTGGAACGGAGTTATGTATCAAAACCCACTTTGAAG___GAAGTGGTCATAGTAAGTGCTACAAGAACACCCATTGGATCTTTTTTAGGCAGCCTTTCCTTGCTGCCAGCCACTAAGCTTGGTTCCATTGCAATTCAGGGAGCCATTGAAAAGGCAG___GGATTCCAAAAGAAGAAGTGAAAGAAGCATACATGGGTAATGTTCTACAAGGAGGTGAAGGACAAGCTCCTACAAGGCAGGCAGTATTGGGTGCAG___GCTTACCTATTTCTACTCCATGTACtACCATAAACAAAGTTTGTGCTTCA	in-frame	VLGCYCYMGVIAEEEAYKSELFQKAKSLMQCAGESITLFKNKTNEEFRIGSLRNMMQLCTRCLSNCTKKSPNKIASGFFLRLLTSKLMNDIADICKSL|EIRYVERSYVSKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCA	.
TALL_VC058	ATM	ACAT1	+/+	+/+	11:108259075	11:108127886	splice-site	splice-site	duplication	downstream	upstream	0	1	13	134	21	high	.	.	duplicates(5),mismappers(3),small_insert_size(1)	GGTGTCCTTGGCTGCTACTGTTACATGGGTGTAATAGCTGAAGAGGAAGCATATAAGTCAGAATTATTCCAGAAAGCCAAG___TCTCTAATGCAATGTGCAGGAGAAAGTATCACTCTGTTTAAAAATAAGACAAATGAGGAATTCAGAATTGGTTCCTTGAGAAATATGATGCAGCTATGTACACGTTGCTTGAGCAACTGTACCAAG___AAGAGTCCAAATAAGATTGCATCTGGCTTTTTCCTGCGATTGTTAACATCAAAGCTAATGAATGACATTGCAGATATTTGTAAAAGTTTA|CTTGCAGGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCAACGCAGGAGGATCGCTTGAGCCCAGGAGTTTGAGACCAGCTTG___GTGGGGG...___GAAATAAGATATGTGGAACGGAGTTATGTATCAAAACCCACTTTGAAG___GAAGTGGTCATAGTAAGTGCTACAAGAACACCCATTGGAgCTTTTTTAGGCAGCCTTTCCTTGCTGCCAG	out-of-frame	GVLGCYCYMGVIAEEEAYKSELFQKAKSLMQCAGESITLFKNKTNEEFRIGSLRNMMQLCTRCLSNCTKKSPNKIASGFFLRLLTSKLMNDIADICKSL|laghsgsrl*	.
TALL_VC058	ATM	ACAT1	+/+	+/+	11:108257606	11:108128643	splice-site	splice-site	duplication	downstream	upstream	0	1	4	231	56	high	.	.	duplicates(1),small_insert_size(1)	GAAGCATATAAGTCAGAATTATTCCAGAAAGCCAAG___TCTCTAATGCAATGTGCAGGAGAAAGTATCACTCTGTTTAAAAATAAGACAAATGAGGAATTCAGAATTGGTTCCTTGAGAAATATGATGCAGCTATGTACACGTTGCTTGAGCAACTGTACCAAG|GTGGGGGGAATCAGATCCTGTTTGTATGCTTATGGAATTATCCAGAAGTAAAAGGGGTGAATGATGTAGAGGAGAAGGAAGGGATAACTGTGCCATCTTTGAAAAGGCAACTGGAAATGGGATCCAGAGTAAAGTGGAGAGAACCAGGGAAGATTCCATTAAACTGGACCAGAAGCTTGAAAGAAGAGAAGTGGCTTAGTAAACAAGGAACAAAC	out-of-frame	EAYKSELFQKAKSLMQCAGESITLFKNKTNEEFRIGSLRNMMQLCTRCLSNCTK|vggirsclyaygiiqk*	.
TALL_VC058	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	18	0	120	57	high	.	.	duplicates(8),mismatches(1)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCT	.	.	.
TALL_VC058	KMT2A	MLLT1	+/+	-/-	11:118484975	19:6270759	splice-site	splice-site	translocation	downstream	downstream	0	3	6	197	93	high	.	.	duplicates(2)	GCAGGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG___GAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAGGCTTAGGAATCTTGACTTCTGTTCCTATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGGGCATGTAGAG|TGCACCGTCCAGGTGAGGTTAGAGCTGGGGCATCGCGCCCAACTGCGCAAGAAGCCCACCACGGAGGGGTTCACTCACGACTGGATGGTGTTTGTCCGCGGCCCCGAGCAATGTGACATCCAGCACTTCGTGGAGAAGGTGGTCTTCTGGCTGCACGACAGCTTCCCCAAGCCCAGACGCG___TGTGCAAGGAGCCCCCCTACAAAGTAGAGGAGTCGGGGTACGCTGGCTTCATCcTGCCCATCGAGGTGCACTTCAAAAAC	in-frame	AGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVE|CTVQVRLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFWLHDSFPKPRRVCKEPPYKVEESGYAGFIlPIEVHFK	.
TALL_VC058	KMT2A	MLLT1	+/+	-/-	11:118484314	19:6270759	splice-site	splice-site	translocation	downstream	downstream	1	0	4	506	93	medium	.	.	.	ACCAGAATCAG___GTCCAGAGCAGAGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG___GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG|TGCACCGTCCAGGTGAGGTTAGAGCTGGGGCATCGCGCCCAACTGCGCAAGAAGCCCACCACGGAGGGGTTCACTCACGACTGGATGGTGTTTGTCCGCGGCCCCGAGCAATGTGACATCCAGCACTTCGTGGAGAAGGTGGTCTTCTGGCTGCACGACAGCTTCCCCAAGCCCAGACGCG___TGTGCAAGGAGCCCCCCTACAAAGTAGAGGAGTCGGGGTACGCTGGCTTCATCcTGCCCATCGAGGTGCACTTCAAAAAC	in-frame	PESGPEQSKQKKVAPRPSIPVKQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFK|CTVQVRLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFWLHDSFPKPRRVCKEPPYKVEESGYAGFIlPIEVHFK	.
TALL_VC058	KMT2A	MLLT1	+/+	-/-	11:118484975	19:6230713	splice-site	splice-site	translocation	downstream	downstream	1	0	0	197	213	low	.	.	duplicates(1)	CCTgAGCACTCTCTCCAATGGCAATAGTTCTAAGaAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG___GAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAGGCTTAGGAATCTTGACTTCTGTTCCTATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGGGCATGTAGAG|GAGGAGCCGAGGAAGGTCTGCTTCACCTACGACCTGTTCCTG	in-frame	LSTLSNGNSSKkKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVE|EEPRKVCFTYDLF	.
TALL_VC058	BANP	ZADH2	+/+	-/-	16:88018667	18:75202340	splice-site	splice-site	translocation	downstream	downstream	1	1	0	100	52	high	.	.	.	CTACCCCAATGGCACCTGGCTGGGCGACGAGAACAACCCCGAGATGCGGGTACGCTGCGCCATCATCCCCTCCGACATGCTGCACATCAGCACCAACTGCCGCACGGCCGAGAAGATGGCGCTCAC...GGCTGTGTCCAACCTCTCGGGGCAGGGCAAGCACGGGAAGAAGCAGCTGGACCCGCTCACCATCTACGGCATCCGGT|ATTTGTTGGTGTTAAtGCATCTGACATCAACTATTCAGCAGGCCGCTATGACCCCTCAGTTAAGCCTCCCTTTGACATAGGTTTCGAAGGCATTGGGGAGGTGGTGGCCCTAGGCCTCTCTGCTAGTGCCAGATACACAGTTGGCC	out-of-frame	AVSNLSGQGKHGKKQLDPLTIYGIR|yllvlmhltstiqqaamtpqlslplt*	.
TALL_VC058	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	17	1	117	75	medium	.	.	duplicates(10),low_entropy(1),mismappers(4),mismatches(3)	CCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTAC	.	.	.
TALL_VC058	KLRF1	CD69	+/-	-/-	12:9838064	12:9756419	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	3	12	3	128	624	medium	.	.	duplicates(10),low_entropy(3),mismappers(1),mismatches(2)	CTGGAATAAGAGGAATTTGGGCATTCATGTCTAAAAGTCAGTCAGAGCCAGTCAAAGTTGTTTATTTTTTGAAGACTCAACCTCAATTAATATGGTAAAAGAGTGGATGTCTACTAGAAGAGGCCTGCTTGCATGCTCACCATATCCCTATGTGGGAGCAGGATCCTGCCGTTCATGGATACAGAGGGAGGTGCAGAAGGAAAGATTGCCTCCAGAAGCTAAGGAGTAGACTGGCACTGTTGTCATGTAACCCTA|ATGATGCCACCAGTCCCCATTTCTCAACACGTCATGAAGGGTCCTTCCAAGTTCCTGTCCTGTGTGCTGTAATGAATGTGGTCTTCATCACCATTTTAATCATAGCTCTCATTGCCTTATCAG___TGGGCCAATACAATTGTCCAGGCCAATACACATTCTCAATGCCATCAGACAGCCATGTTTCTTCATGCTCTGAGGACTGGGTTGGCTACCAGAGGAAATGCTACTTTATTTCTACTGTGAAGAGGAGCTGGACTTCAGCCCAAAATGCTTGTTCTGAACATGGTGCTACTCTTGCT	.	.	.
TALL_VC058	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	7	0	18	77	medium	.	.	mismatches(2)	GCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...ATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGC	.	.	.
TALL_VC058	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	2	0	497	85	medium	.	.	duplicates(2),mismatches(1)	CTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACC	.	.	.
TALL_VC058	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	0	3	3	50	55	medium	.	.	duplicates(1)	.	.	.	.
TALL_VC058	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	373	27	medium	.	.	mismappers(1),mismatches(1)	GTTTAGAGGCGTCATTGTGGCTCTTCCTGGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAAC	out-of-frame	FRGVIVALPGNSSLAPANGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL_VC058	TPCN2	RP11-554A11.9	+/+	+/+	11:69081499	11:69135435	splice-site	intron	deletion/read-through	downstream	upstream	0	1	2	211	27	medium	.	.	.	GCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTGGTAAA___GA...CATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTT___G	out-of-frame	IVFRFLRIIPSMK|*	.
TALL_VC058	DNAH11	EEF1A1P6	+/+	-/+	7:21901555	7:22510602	3'UTR	3'UTR	deletion/5'-5'	downstream	upstream	0	0	9	370	4236	low	.	.	duplicates(5),low_entropy(6),mismappers(4),mismatches(49)	CACGACTGTAATCCCAGTTACTCAGGAGGTAGGAGAATCACTTGAACCTAGGAGGCAAAGGTTGCAGTGAGCCGAGGTTGCACCACTGCACTCCCTCCTGGGCAACAGAAC...|...GGGATAATATTCATTTAGCCTTCTGAGCTTTCTGGGCAGACTTGGTGACCTTGCCAGCTCCAGCAGCCTTCTTGTCCACTGCTTTGATGACACCCACCGCAACTGTCTGTCTCATATCACGAACAGCAAAGCGACCCAAAGGTGGATAGTCTGAGAAGCTCTCAACACACATGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAACGGCGATCAATCTTTTCCTTCAGCTCAGCAAACTTGCATGCAATGTGAGCCGTGTG	.	.	.
TALL_VC058	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	5	0	450	324	low	.	.	duplicates(3),mismatches(1)	GTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCC...ATGTTCTGCCATTTGGTCAGAAGACGcTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC058	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	23	324	low	.	.	duplicates(2),read_through(4)	AAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAAC	out-of-frame	NMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC058	EEF1A1P13	TRIO	-/-	+/-	5:14652045	5:14492187	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	6	63	2	low	.	.	low_entropy(4),mismappers(4),mismatches(30)	GTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCCACACGGCTCAcATTGCATGC...AAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCtGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGtTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTG...|...ATCAGTTAAAAAAAG	.	.	.
TALL_VC058	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	2	1	15	11	low	.	.	duplicates(5)	GCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAAC	.	.	.
TALL_VC058	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511337	7:23324464	exon	intron	deletion	downstream	upstream	0	0	5	628	3	low	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(16)	.	.	.	.
TALL_VC058	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	2	3	0	135	14	low	.	.	duplicates(1)	CCTTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACTCTCAAACAGATG___CTTTGGAGTTTAACCCTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACTCTCAAACAGATG___T...CAGCTCGTGTTCGACAATATTCCTTGATGACAGCACAGCCATCCAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACCTGCTACCACGGCCCTTCCC	.	.	.
TALL_VC058	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47997739	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	135	3	low	.	.	duplicates(1)	GTTACACTCATTTGCG|TTCATGCCGTGGAGGAAGTGGTGAAGGAGGTGGTGGGACATGCCAAGGAGACTGGAGAGAAAG___CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGG	.	.	.
TALL_VC058	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853428	18:48055711	exon	intron	deletion/read-through	downstream	upstream	0	0	5	34	0	low	.	.	low_entropy(3),mismappers(1),mismatches(23)	...GCGACTCCTTGACgTTGACAATCGAGTAGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGG|...GGAAGAATAGTTCA	.	.	.
TALL_VC058	CTA-109P11.4	EMX2	+/+	+/+	10:117436324	10:117545632	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	0	51	22	low	.	.	duplicates(3),low_entropy(1)	GAATGAAGCCAGAGGCCAAGGAGAGAATGCGGAATCCTGGAGTGTTGAAGGCCCTTGTTTTGATTCCTCGCGTCCTCCAGT___CCATCCTCATTTTCTGGAGAGGCAGCGTGgCCTAACGACGAAAGCCTCCACAACTGGTTTCTGTCGGTGTGAGTCCCAAATCTGCCACTGGCTGGCTGGGAAACCTTGG|GGAACGACACTAGCCCCGAGAGTTTCCTTTTGCACAACGCGCTGGCCCGAAAGCCCAAGCGGATCCGAACCGCCTTCTCCCCGTCCCAGCTTCTAAGGCTGGAACACGCCTTTGAGAAGAATCACTACGTGGTGGGCGCCGAAAGGAAGCAGCTGGCACACAGCCTCAGCC	.	.	.
TALL_VC058	HNRNPA3	PDE11A	+/+	-/+	2:177223528	2:177758313	3'UTR	intron	deletion/5'-5'	downstream	upstream	0	0	5	784	0	low	.	.	low_entropy(1),mismappers(1),mismatches(3)	AAAAAAAGTTGTTATATAAGTGATTGGGGCAGATTTAACTGATTTTGTTAAACCAATTTGTAAGTTACTGCTTCTAATATTACACTTCTAAAAAGCTGAATTTATACTCATGTCCTAAAGGAGAAT...|...AAAAAAAGAATATT	.	.	.
TALL_VC058	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	0	13	8	low	.	.	duplicates(1),mismappers(1)	CAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGC...GGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACAT...AGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCC	out-of-frame	ANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrh	.
TALL_VC058	CTC-281F24.3	SLC13A5	+/+	-/+	17:6657783	17:6689876	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	1	3	0	64	31	low	.	.	duplicates(1),mismatches(1)	GGgCaACGGCGTCCTGAGCCTGCCTGAAGGCACCA___GGGCGAGAAGAGGaGCTCACCAAAAGTCACTGGCCAAGCCCTCCTCTGGCCTTCTAGGCCGTACTGTGGGCGACGACCCTCGAGGCCTGTTCCAGAAACACCAGGAAGAGGAGCTGGAAGAGAGAAGGAAGTTGTACCG|TCTACAGAGGCTTTTCATAGCCCTCATCTTACTTGGCCATCAGCACAGCTCTCGGAAGAAAGAACTGAAGGGCCATGTTCAGAGATCCCACATCTTGAACTCGGGTCTTCTGACTGCGAGACCAGGGATCTTTCCATACTACCCTGAAGCTG___GCCCTGTGTGTGGTGTAGAGTTCCTAGATGACAAGACAGAGTCCATGTCCTCAAGGAATGTGCGGTTATACGAAGGATGCAGGCACAGAAACACACAAGCCCAGGGATGGAAGGGTGGAGAAACGCCACCCTCTTGACGAAGAAGAGGGCTCTGGGCAGCCTGTGGCTGGAGAAGTTACCTCGGAT	.	.	.
TALL_VC058	PLXNA4	CHCHD3	-/.	-/.	7:132615659	7:133034564	intron	intron	deletion	downstream	upstream	0	0	4	0	61	low	.	.	low_entropy(3),mismappers(2),mismatches(21)	.	.	.	.
TALL_VC058	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606353	intergenic	intron	deletion/read-through	downstream	upstream	0	4	0	15	17	low	.	.	duplicates(1),low_entropy(1)	.	.	.	.
TALL_VC058	FAM126A	EEF1A1P6	-/-	-/-	7:22892548	7:22510716	intron	exon	deletion/read-through	upstream	downstream	0	0	4	0	3929	low	.	.	duplicates(1),low_entropy(2),mismatches(5)	GCCACAGGGCTGT...|...ATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCC	.	.	.
TALL_VC058	HNRNPK	FRMD3	-/-	-/-	9:83970291	9:83533856	CDS	intron	deletion	upstream	downstream	0	0	4	5926	0	low	.	.	low_entropy(1),mismappers(1),mismatches(4)	GAgTATTCCTATGCAGGGGGTCGTGGCTCATATGGTGATCTTGGTGGACCTATTATTACTACACAAGTAACTATTCCCAAAGAT___TTGGCTGGATCTATTATTGGCAAAGGTGGTCAGCGGATTAA...|...TTGGCTGAAAA	.	.	.
TALL_VC058	FRMD4B	RAB11FIP3	-/-	+/-	3:69353637	16:522040	5'UTR	3'UTR	translocation/5'-5'	upstream	downstream	0	4	0	0	252	low	.	.	duplicates(1)	CACATGCGCGCACACACACGCGCGCGCACACAC|GCGCGCGCACACACACGCAGCGGGTGGCCAGTCTTGGTGATGGGGTCTGGGCCCACCCGGGAATGCTGGGGGTTGGGGCAGGCCCGCGGTCCTGCGGGGTGACACCGCTGTGCCTGGGGTGCAGACCCCGAGAAGCACAGGCCCCCTCCTGCTCTGCTGTGAGTCTTCCC	.	.	.
TALL_VC058	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	1	0	108	13	low	.	.	duplicates(3),mismappers(4),mismatches(1)	TGATACCTGACCACCACTTCTGGGAAGGCCCAGAATAGACAGAAGAGAGAGAACATACTAGAGTTGCTAGCCCCTAAGAGTTGAACGAAATGGGCAAaGCCCAG___CTGAAATAACAGGAAACACAT...TCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGC...TCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCC	out-of-frame	CPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC058	CNPY1(11969),AC009403.2(65400)	CNPY1	./-	-/-	7:155545831	7:155509097	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	7	7	low	.	.	duplicates(3)	CCATGCTGCTGCCTCTGGCTCTGCTGGCCCTGCTGCTGGGGCCTGCGCTGGCCCGGAGTG[cccggga]CCCGGGACCCGGAGGTGTTCTGTGGAG___CGTGCAGGGCGCTGATGGACGAGATAG...CACGACATCACCAAGGCTCGGCAGAAGAAGACCAAGGTGGGATCCTTCCGAATCAATCCCGATGGGACTCAGGAGAGGAGAAAG|ATCCCCCTAGCTCAGTCGGAGGCGTTCCTAACGGATCTTTTGGAGAAAGTCTGTGAGCGAATGAACGACTACAAGCTTGAGGAAGACCCTGTGACGAAG	.	.	.
TALL_VC058	MGST2	MAML3	+/.	-/.	4:139698062	4:139983985	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	181	0	low	.	.	duplicates(1),low_entropy(2),mismappers(1),mismatches(2)	.	.	.	.
TALL_VC058	DOCK3	TEX264	+/+	+/+	3:51199759	3:51684429	intron	CDS	deletion	downstream	upstream	0	0	3	1	330	low	.	.	mismatches(2)	TGCAGACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAAcGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGA...|...GCCGATGTGCCGTGGGCAGCATCCTGAGTGAAGGTGAGGAATCGCCCTCCCCTGAGCTCATCGACCTCTACCAGAAATTTGGCTTCAAGGTGTTCTCCTTCCCGGCACCCAGCCATGTGGTGACAGCCACCTTCCCC...CCTGCCTTGGACACCTACATCAAG___GAGCGGAAGCTGTGTGCCTATCCTCGGCTGGAGATCTACCAGGAAGACCAGATCCATTTCATGTGCCCACTGGCACGGCAGGGAGACTTCTATGTGCCTG	.	.	.
TALL_VC058	PICALM	DLG2	-/-	-/-	11:85958152	11:85603730	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	3	241	3	low	.	.	duplicates(1),mismatches(1)	AAATGCATTAATCCTTATAGTCAATTCTGTGCCTAGGATTTTGCCAGGGAACAGTTCACTGACTAGGAAAAGCACTACATTTTAAATTCAGCATTAGTGCATTGGGAAGGATCTTTACTGCTTTGT...|...TTGCCCAGGCTGGTCTCGAACTCCC	.	.	.
TALL_VC058	TRAF5	LINC00467	+/+	+/+	1:211361162	1:211391616	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	102	159	low	.	.	duplicates(1)	GGAAAAATGCCTTTATTGCAAAAAGGATGTGGTAGTCATCAATCTACAG___AATCATGAGGAAAACTTGTGTCCTGAATACCCAGTATTTTGTCCCAACAATTGTGCGAAGATTATTCTAAAAACTGAG___GTAGATGAACACCTGGCTGTATGTCCTGAAGCTGAGCAAGACTGTCCTTTTAAGCACTATGGCTGTGCTGTAACG|ACATGGCAGGGAGGTTTAATAGACATGGATAAGAAGTCCACTCACAGAAATCCTGAAGATGCCAGGGCTGGCAAATATGAAG___GTAAACACAAACGAAAGAAAAGAAGAAAGCAAAA	out-of-frame	EKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKTEVDEHLAVCPEAEQDCPFKHYGCAVT|twqgglidmdkksthrnpedaragkyegkhkrkkrrkq	.
TALL_VC058	TRAF5	LINC00467	+/+	+/+	1:211360779	1:211391616	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	109	159	low	.	.	.	GGAAAACTTGTGTCCTGAATACCCAGTATTTTGTCCCAACAATTGTGCGAAGATTATTCTAAAAACTGAG|ACATGGCAGGGAGGTTTAATAGACATGGATAAGAAGTCCACTCACAGAAATCCTGAAGATGCCAGGGCTGGCAAAT	out-of-frame	ENLCPEYPVFCPNNCAKIILKTE|twqgglidmdkksthrnpedaragk	.
TALL_VC058	TRAF5	LINC00467	+/+	+/+	1:211365468	1:211391616	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	129	159	low	.	.	.	TTGTCCCAACAATTGTGCGAAGATTATTCTAAAAACTGAG___GTAGATGAACACCTGGCTGTATGTCCTGAAGCTGAGCAAGACTGTCCTTTTAAGCACTATGGCTGTGCTGTAACG___GATAAACGG...GTTTGGTTTTAGAAAAGAATGTCCAATTAGAAGAACAG|ACATGGCAGGGAGGTTTAATAGACATGGATAAGAAGTCCACTCACAGAAATCCTGAAGATGCCAGGGCTGGCAAATATGAAG___GTAAAC	out-of-frame	LVLEKNVQLEEQ|twqgglidmdkksthrnpedaragkyegk	.
TALL_VC058	TRAF5	LINC00467	+/+	+/+	1:211371470	1:211391616	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	283	159	low	.	.	.	ATAAATTTGACCTGAGACCTTTGATGGAAGCAGTTGATACAGTGAAACAGAAAATTACCCTGCTAGAAAACAATGATCAAAGATTAG|ACATGGCAGGGAGGTTTAATAGACATGGATAAGAAGTCC...CAGGGCTGGCAAATATGAAG___GTAAACACAAACGAAAGAAAAGAAGAAAGCAAAACCAAAACCAGCACCGATCCCGACATAGATCAGTGACGTCTTTTTCTTCAGATGATCCTATGcTTCCTTCTTC	out-of-frame	KFDLRPLMEAVDTVKQKITLLENNDQRL|dmagrfnrhg*	.
TALL_VC058	EEF1A1P6	CDCA7L(154513),RAPGEF5(17641)	-/-	./-	7:22511784	7:22100597	exon	intergenic	deletion	upstream	downstream	0	0	3	1280	0	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	AGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCgGGCAAGTCCACCACTACTGGCCATCTGATCTAT...GCtGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACC...|...TGGTGTTAATG	.	.	.
TALL_VC058	MAD1L1	INTS1	-/-	-/-	7:1829403	7:1492604	intron	intron	deletion/read-through	upstream	downstream	0	0	3	0	2	low	.	.	low_entropy(1),mismatches(6)	TGGGCTGCCGCG...|...CACGGCTTTATCGAGAGAGAATTCATGTACGTGTTATCTAAAGTGTGCAATTCCATGTTTTCAGAATGTTCACAGGTTGTACAACTTTCATTATAATTTAATTGTAGAACCTTCTTTGGTTCCCC	.	.	.
TALL_VC058	GFRA4	ATRN	-/-	+/-	20:3663354	20:3647187	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	0	3	0	41	21	low	.	.	low_entropy(2)	GAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|TTGAGACAGTCCCAAGAACAGTTTTCCACAGTGAACCTGAGTGTCATTCCTAGTTCTCTCACTGGCTCTACACTGGCCTCCTCCAGCAACCATCAGCTCATCCCTGGACCTGTAATTAAATCAAGTATTTCCTATGCAAAAGTAAAAGGTTAGATGCTGGAACACGGATGGGAGAAACCGTCAAAGAAAGCTTGTGATCATGCAG___ATAAACATAAGGAGGCAGCAAATCCACAAGGAAGAGCATGAAGCCAACGGCAACAGCTTCTAAGTTGGTCAAGAGCCTGCCGCTG	out-of-frame	MVRCLGPALLLLLLL|vetvprtvfhsepechs*	.
TALL_VC058	NCALD	ZNF706	-/-	-/-	8:101725376	8:101203505	intron	5'UTR	deletion	upstream	downstream	0	0	3	2	210	low	.	.	low_entropy(1),mismatches(1)	AAGAAGGTGAT...|...CAGGAGGAGCTCAGTAATTTTTATGAAATGCTTTGACCTCATATCCATTAACTAATTATGGTCCTAGTCAGAAGAAGCTAGCACCCTTCCCTGGTGAAGTTGATACAAATCCATTGTATGTTCCTG	.	.	.
TALL_VC058	EPRS	SLC30A10	-/-	-/-	1:219968815	1:219857893	CDS	intron	deletion/read-through	upstream	downstream	0	0	3	626	0	low	.	.	duplicates(2),low_entropy(1),mismatches(1)	TGGTGCTCCATCCATGGGAGCTAAAAGCCTTTGCATCCCCTTCAAACCACTCTGTGAACTGCAGCCTGGAGCCAAATGTGTCTGTGGCAAGAACCCTGCCAAGTACTACACCTTATTTGGTCGC...|...AAATGCCCCCA	.	.	.
TALL_VC058	PLCG1	CHD6	+/+	-/+	20:41175632	20:41498242	3'UTR	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	496	0	low	.	.	mismatches(2)	CAGGGATGGAGATGGGAAGGTTAGAAAGGCAGCCCTCACCTCTGAGGACAGAGGCCGGGGTCCAGGCCCGTGGGCGCAAgGGTGCCTCATAGCATAGCCAGCATTCAGCACACACAAACCTACTGC...|...AGCAGTTATC	.	.	.
TALL_VC058	C2orf43	PUM2	-/-	-/-	2:20698323	2:20292071	intron	intron	deletion	upstream	downstream	0	0	3	2	101	low	.	.	mismatches(3)	TTGGTTAGAT...|...ATGACACTAAGCCAGAAGACTGCATACCAGATGTACCAGGCAATGAACATGCCAGGGAATTTCTGGCTCACACACCAACTAAAGGACTTTGGATGCCACTGGAGAAAGAAGTCAAAGTTAAGCAC	.	.	.
TALL_VC058	ITGB5	CCDC14	-/-	-/-	3:124782724	3:123955267	intron	5'UTR	deletion	upstream	downstream	0	0	3	0	29	low	.	.	low_entropy(1),mismatches(2)	AGCGTGTGCC...|...CCTAGAAAACAAGATAGCCCAAAATGAAGATGAAAAAGTCCACAGTGGGAATTCAGATGGACTAGAATTAGACTAGCCAGTTCTATAGTTCAGGTGGGCCAGAAATGTCAGCACTGTAGTACGTGC	.	.	.
TALL_VC058	RP11-543P15.1	CACNA1C	-/-	+/-	12:3211799	12:2623364	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	1110	1	low	.	.	low_entropy(1),mismappers(1),mismatches(8)	TTCCGGcGGTGACGACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATG...|...GGGGAACCAT	.	.	.
TALL_VC058	CCDC175	CCDC175	-/-	-/-	14:59521574	14:59551436	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	2	1	0	125	80	low	.	.	.	TTAGAAAATGGATTCTATATAAATGACCAAAAAGCAGATCTTCTGCTCCTGGAAAATAAAAAATTAAAAGAA___TATATTTTATACTTGAAGAATAACATAGAGAAATACAGAGAAGGACAAGAAGCCCTCATGCACACCTCAAGCGACTTGTCTCGGCAACTAATAGCTCAGGAGG|GTGTTTTTTCACAGATAACAAAGAAAAACTAGATGATATATCTAATGATGAAAAAAATGAATTCCTGAACAAGATAAAACAG___AAATCAG?A?CAGCTGACATTTAT...___AGCAACAAAAACAGTGTATCAG	in-frame	LENGFYINDQKADLLLLENKKLKEYILYLKNNIEKYREGQEALMHTSSDLSRQLIAQE|gVFSQITKKN*	.
TALL_VC058	RP3-417G15.1	PLAC1	+/+	-/+	X:133671248	X:134571646	exon	intron	deletion/5'-5'	downstream	upstream	0	0	3	426	0	low	.	.	low_entropy(1),mismatches(3)	GCCAAAATGTACAAGACCACACCgGATGTCATCTTTGTATTTGGATTCAGAACTCATTTTGGTGGTGGCAAGACAACTGGCTTTGGCATGATTTATGATTCCCTGGATTATGCAAAGAAAAATGAACCCAAA...|...AGGACCCCAAA	.	.	.
TALL_VC058	EEF1A1P13	DNAH5	-/-	-/-	5:14652237	5:13935848	exon	intron	deletion	upstream	downstream	0	0	3	110	1	low	.	.	duplicates(1),low_entropy(3),mismatches(18)	CCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGaGTGAAGCTCTTCCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGT...CGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCC...|...GCCTTCACTTTCC	.	.	.
TALL_VC058	C18orf32	DYM	-/-	-/-	18:49489397	18:49373985	CDS	intron	deletion/read-through	upstream	downstream	0	0	3	19006	1	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(6)	GTGGAGTTGGCAGGTGTGCGCAG___GCCAAGCAATGGGGCTGGACACAAGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACGCAGAGAGTAATGCTGAACTTAAG___GGTTTAGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTG...|...GAAGTTAGAG	.	.	.
TALL_VC058	PCDH11X	RP13-258O15.1	+/+	-/+	X:92620810	X:92676586	3'UTR	exon	deletion/read-through/5'-5'	downstream	upstream	0	0	3	1	105	low	.	.	mismappers(1),mismatches(11)	ATGTTTTTTCTCCT...|...TTGGCTTTCCGTTCgaGGATcTTTTTGCGGTCTTTGTCCAGTTTTAGCCTAGTGATAACCACCTTGCTGGGGTGAATGCCTACGTGGACAGTTGTGCCATTAGCCTTTTCCCGCTGCACCCGTTCAATGTAGATAaCATATTTCTTCCTGTAAACCT?GACTAcTTTGCCAATTTG	.	.	.
TALL_VC058	C1orf159	RP5-857K21.6	-/-	+/-	1:1085412	1:632225	intron	exon	deletion/5'-5'	upstream	downstream	0	0	3	0	7223	low	.	.	mismappers(1),mismatches(12)	ACCCCGGGCCTGGG...|...CCTATTGATAGGACATAGTGGAAGTGaGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCTACGGTGAAAAGAAAgATgAATCCTAGGGCTCAcAGCACTGCAGCAGATCATcTCATATTGCTTCCGTGGAGTGTGGCGAGTCAGCTAAATACTTTGACGCCGGTGGGGATAGCGATGATTATGGTAGCGGAGGTGAAATATGCTCGTGTGTCTACGTCTATTCCTACTGTAAATATATGGTGTGCTCACACGATAAACCCTAGGAAGCCAATTGATA	.	.	.
TALL_VC058	TAPT1-AS1(5825),ZEB2P1(34721)	TAPT1-AS1	./+	+/+	4:16325965	4:16288884	intergenic	splice-site	duplication	downstream	upstream	2	1	0	59	144	low	.	.	duplicates(2)	CTAGATCATCACTAAAATGAAAGTAAAGGAATGAAAGAGGAGAGGTAGGAGAGGAAAAAACAATCTGTGAGAAATAACAACATATATCAGAAGCTGGAAAGTGCATGGAGTAGAGCTCAGTGACAC...GAAGCAGAGAGGAATGAGCGTACAAAGCAAGTCTGAATTTACCCTGGAGAACCCCACAAAGGCTTGAAACTTGGAAACATCATGAACTGCTGGGCCAGAG|ACCCCACATATAGGAACCATCGGATCCCTGTGTACAGATGAAGAACTGAGgCTTGGAAAGC...ACCTTGCTCACAGTCACACGTTAAGGTCTAAAGTGAGAAATTAAACCAAGTCTTCCAATCTCAAAGACTTTAAAGGAAAAGCTACAAGCTACAAG___AATAAAGAAGTTCTTCATGTATATTTcTG	.	.	.
TALL_VC058	RGPD8	PAX8	-/.	-/.	2:112394149	2:113227739	intron	intron	deletion	downstream	upstream	0	0	2	1	1	low	.	.	.	.	.	.	.
TALL_VC058	CLN6	MAP2K5	-/-	+/-	15:68211794	15:67722511	CDS	intron	deletion/5'-5'	upstream	downstream	0	0	2	163	0	low	.	.	duplicates(2),mismappers(2)	TGGGGACTACTTCCACATGGCCTACAACGTCATCACGCCCTTTCTCTTGCTCAAG___CTCATCGAGCGGTCCCCCCGCACCCTGCCACGCTCCATCACGTACGTGAGCATCATCATCTTCATCATGG...|...GTTTAAAAACA	.	.	.
TALL_VC058	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	0	0	8	15	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(1)	CGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGAC...CCGaGcCCTCaCgGGCCACCAACCACgGCgCCCCgGCCAGCACACCCAAGCGCGgGCCCAgGGGCCCgggCAgCGcCCCCCgTGGGGGCCACAGCGgGCCggGgcCCgCCCCCGgGGTGA	.	.	.
TALL_VC058	RPL41	AKR1D1	+/+	+/+	7:137514068	7:138033346	3'UTR	intron	deletion	downstream	upstream	0	0	2	3120	0	low	.	.	mismappers(2),mismatches(3)	GCCAAGTGGAGGAAGAAGCGAATGCGCAGGCTGAAGCGCAAAAGAAGAAAGATGAGGCAGAGGTCCAAGTAAACCGCTAGCTTGTTGCACCGTGGAGGCCACAGGAGCAGAAACATGGAATGCCAGACGCTGGGGATGCTGGTACAAGTTGTGGGACTGCATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATC...|...AAAAAAAACGGCC	.	.	.
TALL_VC058	RP11-123O10.4	GRIP1	-/-	-/-	12:66964038	12:66796729	intron	intron	deletion/read-through	upstream	downstream	0	0	2	1	1	low	.	.	duplicates(2),mismappers(2),mismatches(1)	TTGGAATGTGGCCTCAAGCAGGACTGTTAGGAGATTGTTGCAATAGTCCCGCTGAAGTTGACGGTGGAGGTGTAGATGAGAAGACTCAGCTAACGG...|...GCAATTACTTGATGATGCACGTGTCAAGAGTCATTCTACATGCTGGAGATACCGTGGTACAGAAGACAGAGGAGGTCCTT	.	.	.
TALL_VC058	RP5-1142A6.9	RP11-95H11.1(40623),AC008269.2(3878)	+/+	./-	16:88719225	2:206862917	exon	intergenic	translocation	downstream	downstream	0	0	2	78	2	low	.	.	.	GGGTCTCTTACAGTGCTGGGATGATAGGGGTGAGCCGCTGTGCCCGGCCCGGGGTTTCTTTTTGAAGTGGTGAGAAGGCAGATGCTCAACTGTGAATCCACTAGAAACCCCTGAGTTGTACTTTTT...|...TTGGTGTATGAACATTTTATCCATTAGCTATATTGAGCACAGGGCTGAAGACTCACAAGCTTTGaAAAGGTACAATAAAATTTTTAAGATCTGATCTTAAAAAATTTATTGGGTCCAAAAAAAA	.	.	.
TALL_VC058	CEP128	DIO2-AS1	-/-	+/-	14:80478318	14:80437519	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	1	1	30	2	low	.	.	mismappers(2),mismatches(1)	CTACACTGCTTAAATCTCGTGGAGCCATGATG|GCTTTTCGATTTGAGGTTACCATGAGGCTTGCAAATAACATCTTATAACCCATTATTTTAAATGGATGACAACTCTAATTGCAAAACAAACAAGCAAGCAAAAAGAAAACTAATGAAAGCTCTACAGTTTAACTTCATCCTCC	.	.	.
TALL_VC058	PTPRC	RP11-382E9.1	+/+	+/+	1:198752366	1:199224396	CDS	intron	deletion	downstream	upstream	0	0	2	733	0	low	.	.	mismappers(1),mismatches(2)	GAGACCAG___GAAATCTGTGCTCAGTACTGGGGAGAAGGAAAGCAAACATATGGAGATATTGAAGTTGACCTGAAAGACACAGACAAATCTTCAACTTATACCCTTCGTGTCTTTGAACTGAGACATT...|...ATTTTTATGTTTC	.	.	.
TALL_VC058	UHRF1	ZNRF4(54477),TINCR(46834)	+/+	./+	19:4961664	19:5511333	3'UTR	intergenic	deletion	downstream	upstream	0	0	2	912	0	low	.	.	mismappers(1),mismatches(1)	CGGACGGACGCCAGCACACGAAGTCACGTGCAAGTGCCTTTGATTCGTTCCTTCTTTCTAAAGACGACAGTCTTTGTTGTTAGCACTGAATTATTGAAAATGTCAACCAGATTCTAGAAACTGCGG...|...CTTTAAAAGACC	.	.	.
TALL_VC058	LEPR	PDE4B	+/+	+/+	1:65633218	1:66043082	3'UTR	intron	deletion	downstream	upstream	0	0	2	12	0	low	.	.	mismatches(1)	GGAAGATGTTCCGAACCCCAAGAATTGTTCCTGGGCACAAGGACTTAATTTTCAGAAG___AGAACGGACATTCTTTGAAGTCTAATCATGATCACTACAGATGAACCCAATGTGCCAACTTCCCAAC...|...GAAAAAGGGGA	.	.	.
TALL_VC058	SPDYE2B	ARMC10	+/+	+/+	7:102656399	7:103084362	intron	intron	deletion	downstream	upstream	0	0	2	15	1	low	.	.	duplicates(1)	GCCTGGGACAAAGATCTGAGGGTGTCGGACAAGGTAAGGTTGTTCTCCATGTAACTGTTCCTGTTCCAACGCATGGCTGGGGGGAGGGCGCAGCTTCCAAACCCACAGTTCTCCCTCCACCACCTC...|...AAAATTTCGT	.	.	.
TALL_VC058	CTNNA1	MATR3	+/+	+/+	5:138831358	5:139317700	intron	CDS	deletion	downstream	upstream	0	0	2	0	1104	low	.	.	low_entropy(2),mismappers(1),mismatches(2)	GTTATTTTAAAACAC...|...GATTCTAAATAAAATTAATGAG___aCATTTATTGAAATGGCAACCACAGAGGATGCTCAGGCCGCAGTGGATTATTACACAACCACACCAGCGTTAGTATTTGGCAAGCCAGTGAGAGTTCATTTATC	.	.	.
TALL_VC058	SLC2A13	KIF21A	-/-	-/-	12:39756754	12:39437908	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	2	21	1	low	.	.	mismatches(1)	ATTTTTTCATAATTTAATTTTACCACTGAACCTGATTTTAGTACATAAGAGTCTAAATATTAAGTTATTCAtTCTAAAAGGGGAAATCAGTAAAAGCAAGGAATTTATGAAATTTTTGCTGTAATT...|...AAAAAATATGGAA	.	.	.
TALL_VC058	NFIC	TJP3	+/+	+/+	19:3456552	19:3725812	CDS	intron	deletion/read-through	downstream	upstream	0	0	2	0	0	low	.	.	mismatches(1)	CCTACTTCCCCCACACGGCCATCCGCTACCCACCTCATCTCAACCCCCAGGACCCGCcCAAAGATCTTGTCTCGCTGGCCTGCGACCtAGCCAGCCAcCAACCTGGACCG___CCT...|...TCCCTGCAAGAC	.	.	.
TALL_VC058	UBE3C	WDR3	+/+	+/+	7:157175034	1:117958910	splice-site	splice-site	translocation	downstream	upstream	2	0	0	50	145	low	.	.	.	CGCTTTTCCCATTGCTAATGGCCCCAACCTTACCCTTTTGGTAAGGCAGCTTCTGTTTTTTTACAAACAAAATGAAGACTCAAAACGTTTG___ATATGGCTGTATCAGAACTTAATTAAACACAGCTC...GATTGATGAGCCTCTGTTGCAG|GATTCACTTTGGACAGATCACTAGCAATCAAATGCTTGTGCCAGTGATAGAAAAATTAAGGGAAACAACTATTTCAAAAGTCAGCCAAGTCCGG___GATGTTATCG	in-frame	LMSLCCr|IHFGQITSNQMLVPVIEKLRETTISKVSQVRDVI	.
TALL_VC058	NDUFA6-AS1	SOCS2	+/+	+/+	22:42125407	12:93572685	splice-site	splice-site	translocation	downstream	upstream	0	2	0	66	1341	low	.	.	.	CAAAAGAGGCCTCAGGTGGCTCCTCAGAGTGTCTGTGGTTCTCTGTCCCAGGCTGTTCCCTAAGAAGGTCTGCCCAGGACTCAG|GCGATCAGTGGGTGACCGCGGCTGCGAGGGACTTTGTCATCCGTCCTCCAGGATCTGGGGAGAAAGAGCCCCATCCCTTCTCTCTCTGCCACCATTTCGGACACCCCGCAGGGACTCGTTTTGGGATTCGCACTGACTTCAAGGAAGGACGCGAACCCTTCTCTGACCCCAGCTCGGGCGGCCACCTGTCTTTGCCGCGGTGACCCTTCTCTCATGACCCTGCGGTGCCTTGAGCCC	.	.	.
TALL_VC058	STAM	PTPLA	+/+	-/-	10:17644379	10:17604047	splice-site	splice-site	inversion	downstream	downstream	0	2	0	95	641	low	.	.	duplicates(3)	CCCGGGGACACCTCGGCACGCAGCGGAGATGCCTCTTTTTGCCACCAATCCCTTCGATCAGGATGTTG|GTGGTTGGTTCTAGCTATTGCCATGGTACGTTTTTATATGGAAAAAGGAACACACAGAGGTTTATATAAAAGTATTCAGAAGACACTTAAATTTTTCCAGACATTTGCCTTGCTTGAG___ATAGTTCACTGTTTAATTG___GAATTGTACCTACTTCTGTGATTGTGACTGGGGTCCAAGTGAGTTCAAGAATCTTTATGGT	out-of-frame	MPLFATNPFDQDV|ggwf*	.
TALL_VC058	RFX2	UBE4A	-/-	+/+	19:6199476	11:118368631	splice-site	splice-site	translocation	upstream	upstream	0	1	0	1	35	low	.	.	duplicates(1)	CGAGACACTGCTGGTGGTACTCGATGTAG|ATGAACTCCCAGCTAGCCCAGATGACTCGGATAATAGCGTGTCAGAGAGCCTGGATGAATTCGATTACTCTGTGGCTGAGATTAGCCGCTCATTCCGATCACAGCAGGAAATATGTGAGCAACTCAACATCAATCACATGATCCAAAGGATCTTCC	.	.	.
TALL_VC058	SPPL3	TKT	-/-	-/-	12:120903845	3:53242242	splice-site	splice-site	translocation	upstream	downstream	0	1	0	21	875	low	.	.	.	CGGGCCCGGCCACAGCCTGCAGCGGAGCCCACGAGAGGCAGCGCCATGGCGGAGCAGACCTACTCGTG|CCACCCCACGTCATGCTGCAGCGCCGCAGAGATCATGGCTGTCCTCTTTTTCCACACCATGCGCTACAAGTCCCAGGACCCCCGGAATCCGCACAATGACCGCTTTGTGCTCTCCAAG___GGCCATGCAGCTCCCATCCcCggCGCG	in-frame	MAEQTYSc|HPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPIpg	.
TALL_VC059	PHF6	HPRT1	+/+	+/+	X:134413657	X:134498390	splice-site	splice-site	deletion/read-through	downstream	upstream	35	43	1	138	303	high	.	.	duplicates(29),low_entropy(8),mismappers(9),mismatches(3)	AGCTG___ATGTGTTCTTTGTGCCATTGTCCTGGAGCAACAATTGGTTGTGATGTGAAAACATGTCACAGGACATACCACTACCACTGTGCATTGCATGATAAAGCTCAAATACGAGAGAAACCTTCACAAGGAATTTACAT___GGTCTATTGCCGAAAACACAAGAAAACTGCACATAACTCCGAAG___CTGATTTAGAAGAAAGTTTTAATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAAGAAAAGTCGCAAAGGAAGGCCAAGAAAAACTAATTTTAAAGGGCTGTCAGAAGATACCAGGTCCACATCCTCCCATGGAACAGATGAAATGGAAAGTAGTTCCTAT|CTTGCTGGTGAAAAGGACCCCACGAAGTGTTGGATATAAGCCAGACT___TTGTTGGATTTGAAATTCCAGACAAGTTTGTTGTAGGATATGCCCTTGACTATAATGAATACTTCAGGGATTTGAAT___AGACGGGGTTCACCGTGTTGCCTAGGCTGGTCTCAAACCCCTGAGCTCAAGCAATCTGCCCTCCTTGGCCTCCCAAAGTGTTGGATTTACAGGCGTGAGCCACTGTGCCTGGATATG___TTCCAGGGTACATATGCAGG	out-of-frame	LMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTRSTSSHGTDEMESSSY|lagekdptkcwi*	.
TALL_VC059	PHF6	HPRT1	+/+	+/+	X:134393952	X:134498390	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	89	303	low	.	.	duplicates(2)	CTTTGTGCCATTGTCCTGGAGCAACAATTGGTTGTGATGTGAAAACATGTCACAGGACATACCACTACCACTGTGCATTGCATGATAAAGCTCAAATACGAGAGAAACCTTCACAAGGAATTTACAT___GGTCTATTGCCGAAAACACAAGAAAACTGCACATAACTCCGAAG|CTTGCTGGTGAAAAGGACCCCACGAAGTGTTGGATATAAGCCAGACT___TTGTTGGATTTGAAATTCCA	out-of-frame	LCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSE|acw*	.
TALL_VC059	ICMT	AL356693.1(12152),MIR4689(34561)	-/-	./-	1:6235717	1:5828111	splice-site	intergenic	deletion	upstream	downstream	4	2	1	15	13	high	.	.	duplicates(2),mismatches(1)	CTCTGAGGCGCGTCTCAGCCTCGCCACCTTCCTGCTGGGCGCCTCGGTGCTCGCGCTGCCGCTGCTCACGCGCGCCGGCCTGCAGGGCCGCACCGGGCTGGCGCTCTACGTGGCCGGGCTCAACGCGCTGCTGCTGCTGCTCTATCGGCCGCCTCGCTACCAG|GTGGGGAGAACCCCCCCTCCACTCTCAGTTCACGTGGGTCTTATGGCCTGGACAGCCCCTCCCTGCCTCGTGACCGCTCCAGCACCTGGGCCTGGCCAATCAGAG___GAGTGGCACAAACGGAATCCGCG	out-of-frame	SEARLSLATFLLGASVLALPLLTRAGLQGRTGLALYVAGLNALLLLLYRPPRYQ|vgrtppplsvhvglmawtappclvtapapgpgqseewhkrnp	.
TALL_VC059	ERCC6L	XRCC6P5(127137),B3GNT2P1(38445)	-/-	./-	X:72238844	X:99848295	splice-site	intergenic	duplication	upstream	downstream	1	2	0	8	2	high	.	.	.	GAAATTCAAGCTCCAAACTCTAAGCTCCAAGCTCCAAGCTCCAAGCTCCAAGCTCCAAACTCCCGCCGGGGTAACTGGAACCCAATCCGAGGGTCATGGAGGCATCCCGAAGGTTTCCGGAAGCCGAGGCCTTGAGCCCAGAGCAGGCTGCTCATTACCTAAG|AGTTTCCAGTTGTTCTTTCTGGGTGATGGTGATATAGATGTACAGTACTACATGGCACTAATATATAG___TGCCACATCTTCCAATGAGAATAATATCAGTACAAATTTTTAAAGATTAGGAAAAGAAACGGATAAATTCCTGGACACATACACCCTCCCAAGATTGAACCAGGAAGAAATTGAATTTCTGAACACACCAA	out-of-frame	MEASRRFPEAEALSPEQAAHYLr|vsscsfwvmvi*	.
TALL_VC059	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	14	2	70	36	medium	.	.	duplicates(3),low_entropy(1),mismatches(1)	TGCGCCGGGTCaTTCTTCCCCAAATGCAGGCAGAGgCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATG...___TGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL_VC059	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	3	0	7	19	medium	.	.	mismatches(1)	CTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTC...GTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGC	.	.	.
TALL_VC059	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	3	2	0	23	21	medium	.	.	low_entropy(1),mismatches(2)	TTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTG	.	.	.
TALL_VC059	PIN4	XXyac-YR12DB5.1(160541),RNU6-974P(239373)	+/+	./-	X:72196904	X:81761847	splice-site	intergenic	inversion	downstream	downstream	3	0	0	168	6	medium	.	.	.	CAAGCTTCCAAGATGCCGCCCAAAGGAAAAAGTGGTTCTGGAAAAGCGGGGAAAG___...TCAAGGTCCCAAAGGTGGTGGCAATGCAGTAAAG___GTCAGACACATTCTATGTGAAAAACATGGCAAAATCATGGAAGCCATGGAAAAGTTAAAGTCTGGGATGAGATTCAATGAAGTGGCCGCACAGTATAGTGAAGATAAAGCCAGGCAAGGG|GTTCAGAGACTACAGTTTCCTGATTAAATCaCATAGAAAGGAAGCCTCCTTAAAGAGACTAAG	out-of-frame	QGPKGGGNAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQG|vqrlqfpd*	.
TALL_VC059	RPS6P7(137645),MEI4(56342)	ATG5	./.	-/.	6:77634316	6:106260443	intergenic	intron	inversion	upstream	upstream	0	2	1	2	8	medium	.	.	duplicates(1)	.	.	.	.
TALL_VC059	FBXW7	FBXW7	-/-	-/+	4:152534941	4:152512393	splice-site	intron	inversion/5'-5'	upstream	upstream	1	2	0	75	12	medium	.	.	.	GAGAAGTGGCCCTGGACGGGCAGAAGCCGCAGCCTGAAAAGACCCAGGAAGAGGAAAAGAGGAG___TACCGCGCCGGAGCCTTCCGCAGCTGCCGCTTCAGTCCGAAGGAGGAAGGGAACCAACCCACTTTCTCGGCGCCGCGGCTCTTcTCTAAAAGT|ACAACAGGAAACCACTGAAAGCTTTGATAAGAATGGAGGACGATATTAAGAAATTAATGTTCTTGAAGAATGAATGTGATCTCAAAAAGCAGAAACAACCCCAAAGTCCATCAACTGATGAATAAAATGTGGTACCCTCCATACAACTGAATACTATTCAGTCCTAAAAAGAATGAAGTTCTCATGCATGCTACAACACAGAAG	out-of-frame		.
TALL_VC059	P2RY8	DHRSX	-/.	-/.	X:1512919	X:2346717	intron	intron	deletion	downstream	upstream	1	0	1	5	5	medium	.	.	duplicates(1),mismappers(2),mismatches(2)	.	.	.	.
TALL_VC059	EEF1A1P6	DNAH11	-/-	+/-	7:22510784	7:21871460	exon	intron	deletion/5'-5'	upstream	downstream	0	0	8	2102	0	low	.	.	duplicates(1),low_entropy(9),mismatches(24)	GGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCC...CCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCC...|...ACCTCTAAGCA	.	.	.
TALL_VC059	GYPE	RP13-578N3.3	-/-	+/-	4:143876746	4:143841053	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	3	3	1	90	18	low	.	.	duplicates(4),low_entropy(1),mismappers(1)	GCACACTTCAACCTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATG___GGATAACACTCATTAATTGGTGGGCGATGGCTCGTGTTATTTTTGAGGTGATGCTTGTTGTTGTTGGAATGATCATCTTAATTTCTTACTGTATTCGATGACTGATAAAG|AAAGAGCATGCTCCCTGTGTTGATGCAGTCGCCCCCCTCCCGGGCTTTGTTCTACACATGGATGTAACCTGCCACACACTGGAAGACACTAAGTTTGGAACCCATGTAATGTTCAACTAGTCAAACAAGGGAAAATAGCATCAACCTTACCATTAATTTAAGTCACCTTTTGCAAAAGCTCCTCTACCCCATATGTTTTTTAACCGACTAATGGAACTGTCAGC	out-of-frame	HTSTSSSVTKSYISSQTNGITLINWWAMARVIFEVMLVVVGMIILISYCIR*lik|kehapcvdavaplpgfvlhmdvtchtledtkfgthvmfn*	.
TALL_VC059	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510345	7:22330201	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	6	6471	12	low	.	.	duplicates(1),low_entropy(9),mismappers(4),mismatches(36)	G___...GTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAAcGGTCTCAGAACTGTTTGTTTCAATTGGCCATTTAAGTTTAGTAGTAAA...___GAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCGTGTGGCAGTTgTAAGTTATTAGTTTTTAAAcTCAGTACTTTTTAATGGAAACAACTtGACCcAAAATTTGTCACAGAATTTTG...|...AGTTACATGAGA	.	.	.
TALL_VC059	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	6	0	0	66	181	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	AGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAG	.	.	.
TALL_VC059	AC133528.2	ING5	+/+	+/+	2:241690653	2:241709216	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	66	192	low	.	.	duplicates(1)	AGACTCTGGAGGCCTGATAG|ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTG?A?G???????????????AAA?T	.	.	.
TALL_VC059	DDTL	AP000350.6(2381),AP000350.7(8043)	+/+	./-	22:23972219	22:23931955	3'UTR	intergenic	inversion	downstream	downstream	0	6	0	26	23	low	.	.	duplicates(1)	CTgCCTCATGGGGATAGC?TGTCTTGTCTGAGCAAAGGGAGAGTG|CACCAAACTTTGGGTAACAAACAgTTTAAACTTGTTTTTTTAGACATTCAGTAAGCCCTTTCTCCCCCCTCCCCAAACCGTTTGATTACAAAGAAGCACAATGGGTTAACTGTGGCAAAACATAAGAAATAAGGCAGGGGAGGCAGGTGC	.	.	.
TALL_VC059	IKBKG	CTAG1A	+/+	+/+	X:154556376	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	0	57	15	low	.	.	duplicates(3)	CCAGATTCTGCGGGAGCGCTGCGAGGAGCTTCTGCATTTCCAAGCCAGCCAGAGGGAGGAGAAGGAGTTCCTCATGTGCAAGTTCCAGGAGGCCAGGAAACTGGTGGAGAGACTCGGCCTGGAGAAGCTCGATCTGAAGAGGCAGAAGGAGCAGGCTCTGCGGGAGGTGGAGCACCTGAAGAGATGCCAGCAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCcCC	out-of-frame	QILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQ|ptdccrppptaalhqllspaafpvdvdhavlsarvfgsaslraealspawrpflgha	.
TALL_VC059	IKBKG	CTAG1A	+/+	+/+	X:154552189	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	81	15	low	.	.	duplicates(1)	TGAATAGGCACCTCTGGAAGAGCCAACTGTGTGAGATGGTGCAGCCCAGTGGTGGCCCGGCAGCAGATCAGGACGTACTGGGCGAAGAGTCTCCTCTGGGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCT	out-of-frame	NRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQELR|ad*	.
TALL_VC059	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853395	18:48036601	exon	intron	deletion/read-through	downstream	upstream	0	0	5	76	0	low	.	.	low_entropy(1),mismatches(9)	...CCCGGTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGGGTATACTACGGtCA|...GGAAATCATGTC	.	.	.
TALL_VC059	MYB	AHI1	+/+	-/+	6:135204894	6:135287883	intron	intron	deletion/read-through/5'-5'	downstream	upstream	3	0	1	200	4	low	.	.	duplicates(2),low_entropy(6),mismappers(3),mismatches(5)	AAGGATTGCAAGCACATTTTGTTTAATTAAATCAGATTGCTTCCTTCCTGGCCTCTCTCTGACAGCAATTGTTTTGGTAAAATGGCTGTGGACTGGAATGTGAGACAGGGAGTCAGTATTTATGGGGAATCTGGACAAGTTCCTGCGTCAGTGAGGCTGGAGTTGGCCCCGTGTGGAGAAGACTCAGAATACCACAAAGAGGCCAGACGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATAACTTGAG|GTCAGGGGTTTGAG?CCAGCCTGGCCAACAcGGTGAAAC...GGcCAGCCTGGCCAACACGGTGAAACCCCGTCT	.	.	.
TALL_VC059	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	37	13	low	.	.	.	GCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGT	out-of-frame	FEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL_VC059	RAD50	RAD50	+/+	+/+	5:132609396	5:132603300	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	2	1	0	159	115	low	.	.	.	GACGACTATAAGAAG___CAAAAAGAAACTGAACTTAATAAAGTAATAGCTCAACTAAGTGAATGCGAGAAACACAAAGAAAAGATAAATGAAGATATGAGACTCATGAGACAAGATATTGATACACAGAAG|GCAAAGCATAATTGATTTGAAGGAGAAGGAAATACCAGAATTAAGAAACAAACTGCAGAATGTCAATAGAGACATACAGCGCCTAAAGAACGACATAGAAGAACAAGAAACACTCTTG	out-of-frame	DDYKKQKETELNKVIAQLSECEKHKEKINEDMRLMRQDIDTQK|akhn*	.
TALL_VC059	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	0	3	0	5	4	low	.	.	duplicates(1)	GGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAG	out-of-frame	TEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgepls	.
TALL_VC059	MTRNR2L8	SBF2	-/-	-/-	11:10507887	11:10230064	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	3	62	1	low	.	.	low_entropy(2),mismatches(12)	GCGACCTCGGAGCAgAAcCCaACCTCCGAGCAgtACATGCtaAGACTTCACCAGTCAAAGCGAAcTACtAtacTcAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAA...|...CATAATGGTAAAGGGATCAATTCAACAAGAAGAGCTAACTATCCTAAATATATATGCACtCAATACAGGAGCACCCAGATTCAgAAAGCAAGTCCTcAGaGACCTACAAAGAGACTTAGACTCCCA	.	.	.
TALL_VC059	EEF1A1P13	TRIO	-/-	+/-	5:14652557	5:14447055	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	167	1	low	.	.	low_entropy(3),mismappers(2),mismatches(7)	AGtCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGG...|...TTTCACCATGTTGGtCAGgCTGGTCTTGAACTCCTGGCCTCAAGTGATCTGCCCACCTCGGCCTCCC	.	.	.
TALL_VC059	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	94	152	low	.	.	duplicates(1)	CGCGGGTGGTTCCGGTCCGGCTTTTCAGGCCGGACGGGTGCCTGCCCCTCAGGTGCGAGTTTGTGCGGTAAAGAACACACCCCGGAGATGTGGACACGGCCGCCCCAGGAGGGTCCTTGTTTGG...CGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG	out-of-frame	RELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC059	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	10	152	low	.	.	read_through(4)	CACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCC	out-of-frame	HLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC059	NFKB2	FBXL15	+/+	+/+	10:102402159	10:102421052	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	224	6	low	.	.	duplicates(2)	CCCAGTGGCAGCCTCCTGCGCAGCTACGAG___CTGGCTGGCGGGGACCTGGCAGGTCTACTGGAGGCCCTGTCTGACATGGGCCTAGAGGAGGGAGTGAGGCTGCTGAGGGGTCCAGAAACCCGAGACAAGCTGCCCAGCACAG|GCCAAGGAGGCGGGTTTGGTGCGGCCACTCCAAGGCCAAAGCGAGAAAATCTTACTGCGCACGCGCAATAGACAGCCGATGGAGCCACCGATGGAGCCGTCCGGAGGGGAGCAAGAGCCCGGAGCCGTCAG___GTTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCC	out-of-frame	PSGSLLRSYELAGGDLAGLLEALSDMGLEEGVRLLRGPETRDKLPST|gqgggfgaatprpkrenltahaq*	.
TALL_VC059	EXOC1	AC110611.1(8524),CEP135(10274)	+/+	./+	4:55902455	4:55938597	CDS	intergenic	deletion/read-through	downstream	upstream	0	2	1	132	18	low	.	.	duplicates(1)	CAAGAACTTCGTAAAGTCATTAAGGAGTACC|CAGATTTGTTTACTGCAGAAAGCATTGGTTCATTGCTTCAGCTTCCTTATCAGATGGTGCCTTATGCTTGTTTTGGTGAGAAAAGGCTGCAGGTTGATTTTCTGACTTCCTTCCCTATTCTCCTGCCTCAATTCCCTCTGAGAGATGTGATCCCCATAAATCATAATAGGTTGCTGAGGGaTG	out-of-frame	QELRKVIKEY|pdlftaesigsllqlpyqmvpyacfgekrlqvdfltsfpillpqfplrdvipinhnrllrd	.
TALL_VC059	DNAJC17	RMDN3	-/-	-/-	15:40773727	15:40745259	splice-site	splice-site	deletion/read-through	upstream	downstream	2	1	0	77	139	low	.	.	duplicates(1),low_entropy(1)	GCAAGAAGGAGGATGAGTCAAAAGGTGGCTACTCCAAAGACGTCCTCCTACGGCTTTTGCAGAAG___TATGGTGAGGTTCTCAACCTGGTGCTTTCCAGTAAGAAGCCAGGCACTGCTGTGGTGGAGTTTGCAACCGTCAAGGCAGCG___GAGCTGGCTGTCCAGAATGAAGTTGGCCTGGTGGATAACCCTCTGAAGATTTCCTGGTTGGAGGGACAGCCCCAGGATGCCGTGGGCCGCAGCCACTCAGGACTGTCAAAG|TTACACAACAGCCAATGCGGAGTCTGACAATGAGCGGGACTCTGACAAAGAAAGTGAGGACGGGGAAGATGAAGTGAGCTGTGAGACTGTGAAGATGGGGAGAAAGGATTCTCTTGACTTGGAG	out-of-frame	KKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQPQDAVGRSHSGLSK|lhnsqcgv*	.
TALL_VC059	DNAJC17	RMDN3	-/-	-/-	15:40773727	15:40752178	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	77	45	low	.	.	duplicates(1)	GGATAACCCTCTGAAGATTTCCTGGTTGGAGGGACAGCCCCAGGATGCCGTGGGCCGCAGCCACTCAGGACTGTCAAAG|TGATGCTCCTGCGGGCTGTCCCAGGTGGGGCTGGAGATGCCTCAGTGCTGCCCAGCCTTCCACGGGAAGGAC	out-of-frame	DNPLKISWLEGQPQDAVGRSHSGLSK|*	.
TALL_VC059	CTC-451P13.1	DMGDH	-/-	-/-	5:79284402	5:79215533	exon	intron	deletion/read-through	upstream	downstream	0	0	3	18	1	low	.	.	mismatches(1)	GTCTGTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATACgGAAGACCTCTTATGCtCAGCACCAACaGGTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCG...|...TTTGTGAAAAAG	.	.	.
TALL_VC059	MYRIP	RP11-761N21.2	+/.	+/.	3:40244324	3:40761668	intron	exon	deletion	downstream	upstream	0	0	3	1	513	low	.	.	low_entropy(3),mismatches(1)	.	.	.	.
TALL_VC059	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	2	1	0	26	160	low	.	.	duplicates(2)	AAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTC...AACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCG	.	.	.
TALL_VC059	RP11-856F16.2	AMOTL1	-/-	+/-	11:94925425	11:94853577	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	0	3	0	4	8	low	.	.	.	TGAAGAAGGTGCCTGCCTCCTCTCACCTTCCTCCATAATCATAAGTTTCCTGAGGCCACCCCAGCCATATGGAACT|GACTATTTACAATAGCAAAGACATGGAAGCAACCCAAATGTCCAAGACAATGTGGTACATATACACCATGGAATACTATGCAGCCATAAAAAGGAATGAGATCACGTCCTCTGTAGGGACATGGATGAAGCTGGAAGCCATCATTCTCAGCAAACTAACACAGGAACAGAAAAC...GCATGCTTATCTATATGACAGAATGGCAATTCTTTATTCTTTTCTATATTTTTgCAAGTTTgCTATAAGCATAAATTACAcTTATAATAGAGAAATTAGGTATGTATTTATATATGTATGTGTACC	.	.	.
TALL_VC059	IL10RB	IL10RB(10951),AP000295.10(1306)	+/+	./+	21:33288261	21:33308185	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	94	6	low	.	.	.	CGGTCTTCATGGTCTGCCTGGCACTCCTCGGCTGCTTCGCCTTGCTGTGGTGCGTTTACAAGAAGACAAAGTACGCCTTCTCCCCTAGGAATTCTCTTCCACAGCACCTGAAAGAG|CTCTCTGGCATCAATTTTTCCACTTCTCAGAAACACTTTGGCCCACAAATTCCCAAAGGAACCTTGTTCTTCATTCTGGAAAACACGATGCCAACATATCAGAATAAAGGACAGATAGGAGCTTTTGCTTCAAAGTGAATCACTTCATGGATGTTAAAGTGTCCTGAAAGATTCTAAACTTCACAACTTTTG...ACTGTACTATATTTcCAACATATTTGCATATATTAATTGTTATATCTGAAA	out-of-frame	VFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE|lsginfstsqkhfgpqipkgtlffilentmptyqnkgqigafask*	.
TALL_VC059	EEF1A1P6	CDCA7L(66410),RAPGEF5(105744)	-/-	./-	7:22510530	7:22012494	3'UTR	intergenic	deletion	upstream	downstream	0	0	3	5241	0	low	.	.	low_entropy(1),mismappers(1),mismatches(5)	GTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGaTGTCATCAAAGCAGTGGACA...GCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAAcGGTCTCAGAACTGTTTGTTTCAATTGGCCATT...|...TCCTTAAAAGGAAA	.	.	.
TALL_VC059	EEF1A1P11	PTBP2	+/+	+/+	1:96448204	1:96728533	exon	intron	deletion/read-through	downstream	upstream	0	0	3	25	14	low	.	.	.	CTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGtTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTgCT...|...TGACCCATTTTCCT	.	.	.
TALL_VC059	PSIP1	PSIP1	-/-	-/-	9:15474009	9:15490124	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	1	1	1	929	151	low	.	.	.	GCCTAAGAAGGATGAAGAGGGCCAGAAGGAAGAAGATAAGCCAAGAAAAGAGCCGGATAAAAAAGAGGGGAAGAAAGAAGTTGAATCAAAAAGGAAAAATTTAGCTAAAACAGGGGTTACTTCAACCTCCGATTCTGAAGAAGAAGGAGATGATCAAGAAGGTGAAAAG|TGCTTTTTTAGGACCAAAGGATATATTTCCTTACTCAGAAAATAAGGAAAAGTATGGCAAACCAAATAAAAGAAAAGGTTTTAATGAAGGTTTATGGGAGATAGATAACAATCCAAAAGTGAAATTTTCAAGTCAAC...GGAGGCAGGAGTAGTGACAACAGCAACAGCATCTGTTAATCTAAAAGTGAGTCCTAAAAGAGGACGACCgGCAG___CTACAGAAGTCAAGATTCCAAAACCAAGAGGCAGACCCAAAATGGTAAAAC	out-of-frame	PKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEK|cffrtkgyisllrk*	.
TALL_VC059	RP4-706A16.3	AK5	+/+	+/+	1:77129606	1:77311337	exon	intron	deletion/read-through	downstream	upstream	0	0	3	748	2	low	.	.	duplicates(1),low_entropy(8),mismatches(28)	TACAATGGTGGAGTTGGaAGGTGTGCGCAGGCCAAGaAaTGGGGCTGGACACAAGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACgCAGAGAGTAATGCTGAACTTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCAGAAGAGGAGGTTG...|...ATTCTTATTTCTC	.	.	.
TALL_VC059	ITGB1	CCDC7	-/-	+/-	10:32913781	10:32817575	intron	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	25	13	low	.	.	duplicates(1),mismappers(1),mismatches(2)	TCgAGGAGTATCTTTGTGGCTTTCTCTGTATTTCCTGAAT?TGAATGTTGGCCTGC|CCTTAACATTTTTTCCTTCATTTCAACTTTGGTGAATCTGACAATTATGTGTCTTGGAGTTGCTCTTCTCGAGGAGTATCTTTGTGGC?TTCTCTGTATTTCCTGAATTTGAATGTTGGCCTG	.	.	.
TALL_VC059	EML4	AC093609.1(60520),ZFP36L2(59191)	+/+	./+	2:42265418	2:43163211	intron	intergenic	deletion	downstream	upstream	0	0	2	7	3	low	.	.	duplicates(1),mismappers(1),mismatches(1)	CAATTTTTGTATTTT...|...CCTTTTCTTCTAATATTTACTTGGCCAGAGAAGAGCCCCCGCCTTTTATCAAACACCACTGGGATGTCTCAGCTCAGCCTGCCTAAGTCACAAGAGTCCCCGTCACCTGGTGCAGCTCCTCTTCCC	.	.	.
TALL_VC059	MTND4P12	JADE2	-/-	+/-	5:134926988	5:134530646	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	135	12	low	.	.	mismappers(1),mismatches(5)	ATAGCCTACCCCTTCCTTGTACTATCCCTaTGAGGCATAATTATAACAAGCTCCATCTGCtTaCGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATtCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAaTCGCCCACGGACTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGcACtCACAGTCGCATCATAATcCTCTCTCAAGGACTTCAAAC...|...GGACTTAAAAC	.	.	.
TALL_VC059	SUB1	CTD-2066L21.3	+/+	-/+	5:32600650	5:33121847	intron	intron	deletion/5'-5'	downstream	upstream	0	0	2	78	1	low	.	.	mismappers(1)	GTAATTAACAAATGTAAGAGATATGATTTTCAGTATTGTAGCATTGTGTCCAAGTGGCAATTTTTTTTTTTTTTTTAGATGGAGTCTTGCTCTCTctCCCAGGC...|...AGCATCTCCC	.	.	.
TALL_VC059	DHRSX	RP13-297E16.5(169333),DHRSX(281407)	-/-	./-	X:2243023	X:1938109	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	2	30	4	low	.	.	mismappers(1),mismatches(6)	CGGCTGCTGGCGGCTGAGGGAAcCCACGTGACCGCCAACGTGGTGGACCCCGGGGTGGTCAACACGGACGTCTACAAGCACGTGTTCTGGGCCACCCGTCTGGCGAAGAAGCTTCTCGGCTGGTTGCTTTTCAAG...|...AGTGGTCTAGCATTAGACAGCAGGCCTGAGTTTGGAGAAATCCCACTGGAAGAGTCCTGCATGGGGAAGAACCTCCTGGCTCCTCCCAAGAAAGAAA	.	.	.
TALL_VC059	IFT27	RP1-293L6.1(24894),IFT27(11836)	-/-	./-	22:36762904	22:36746366	splice-site	intergenic	deletion/read-through	upstream	downstream	2	0	0	40	2	low	.	.	.	GGGAGACAGTGTG___GAACTCTTCATTTTTGACTCTGCTGGCAAGGAGCTGTTTTCGGAAATGCTGGATAAATTG___TGGGAGAGTCCCAATGTCTTATGTCTCGTCTATGATGTGACCAATGAAGAATC...CCCAG___GTGTTTTAGTTGGGAACAAGACAGACCTGGCCGGCAGACGAGCAGTGGACTCAGCTGAGGCCCGGGCATGGGCGCTGGGCCAGGGCCTGGAATGTTTTGAAACATCCGTG|AGACCAAGTCTCGCTATATTGCCCAGGCTGATCTTGAGCGCCTGACCTCAAGCAGTCCTC	out-of-frame	PGVLVGNKTDLAGRRAVDSAEARAWALGQGLECFETSV|rpslailprlilsa*	.
TALL_VC059	GLO1	BTBD9	-/-	-/-	6:38676074	6:38503816	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	2	285	4	low	.	.	mismappers(1),mismatches(1)	ATATGATAAATTATGTTCAGTGATAACTTAGTTATCAGAAATCAGCTCAGTGGTCTTCCCCGCCATGATTCACATTTGATGAGTTTTTAAAAATCAAAGTGATTTTGAAAATCTCTAATGGCTCAGAAAATAAAAACATCCAGTTTGTGGATGACTATATTTAGATTTCTCTAGACTCTAGTGGAAGACCTTTGGAA...|...AGAAAGGATCCC	.	.	.
TALL_VC059	BTBD6	TMX1(15720),LINC00519(31150)	+/+	./+	14:105250388	14:51273266	CDS	intergenic	duplication	downstream	upstream	0	0	2	129	3	low	.	.	.	GTGGCGGTACCGCGGGCGCTGCGACAGCATCCAGTTTGCAGTGGACAGAAGGGTATTTATTGCAGGGCTGGGCCTGTATGGCTCCAGCTCTGGGAAGGCTGAGTACAGCGTGAAGATTGAGCTCA...|...GAGTTTCACTCTTGTTGCCCAGGCTGGAGTACTGTGGTGCTATCTCGGCTCACTGCAACCTCCACCTCCTGTGTTCAAGCGATTCTCCCACCTCAGCCTCCTGAGTAGCTGGGATTGCAGGCACC	.	.	.
TALL_VC059	DDX41	ZNF678(12434),ZNF847P(7015)	-/-	./-	5:177512516	1:227689877	CDS	intergenic	translocation	upstream	downstream	0	0	2	264	3	low	.	.	.	G___GAGGAACGGACTAAGGCCATCGAGGCATTCCGGGAGGGCAAGAAGGATGTCCTAGTAGCCACAGACGTTGCCTCCAAGGGCCTGGACTTCCCTGCCATCCAGCACGTCATCAATTATGACATGCC...|...ATTTTCTTAAATTTTCACGTGAGTGTTTTTTAATGCTGTTGTAAATGGAGTTGTTTTCTTAATTTCTTTTTTATGTAGCTTGTTAATGTATAGACATAAGTTCTGTATTTTGATTTTATATCATTC	.	.	.
TALL_VC059	EVL	WDR25	+/+	+/+	14:100143439	14:100421320	intron	intron	deletion/read-through	downstream	upstream	0	0	2	111	0	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	CCCGGGCCCCCGGCACCTGGACACCCACCTGTCCAGAGCCTACAGAGACCCTGCGTCCCCACACAGCAGCTCCTCACACCAGAGTTCTGGTGCCCAGCACTCCTCAGCAGCAGTGAGGCCACAGGC...|...CCCCAGTCAG	.	.	.
TALL_VC059	RSF1	CLNS1A	-/-	-/-	11:77672042	11:77629899	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	214	193	low	.	.	duplicates(1),low_entropy(2),mismappers(1),mismatches(4)	GTTCCCAGAAGAGTTTGCGACGTGGTAAAGAAATAAGGCGAGTACACAAGCGAAGACTTTCCAGCTCAGAGAGTGAAG|CCGCCTGTCTTGGTTAGATGGCTCTGGATTAGGATTCTCACTGGAATACCCCACCATTAGTTTACATGCATTATCCAGGGACCGAAGTGACTGTCTAGG...GTTATGGTGAATGCCAAATTTGAAG___AAGAATCAAAAGAACCTGTTGCTGATGAAGAAGAGGAAGACAGTGATGATGATGTTGAACCTATTACTGAATTTAGATTTGTGCCTAGTGATAAATCAGCG	out-of-frame	SQKSLRRGKEIRRVHKRRLSSSESE|aaclg*	.
TALL_VC059	TOMM20	LYST	-/.	-/.	1:235111891	1:235863637	3'UTR	intron	deletion	downstream	upstream	0	0	2	352	2	low	.	.	mismappers(1)	.	.	.	.
TALL_VC059	MRPS28	KCNH7	-/-	-/-	8:80002999	2:162446443	splice-site	splice-site	translocation	upstream	downstream	1	1	0	92	1	low	.	.	duplicates(1)	GCCTAAGACGCGCGCAGGCGGTTTCGCGAGCGCGTTGGAGCGGCACTCGGAGCTTCTACAGAAGGTGGAGCCCCTACAGAAG___GGTTCTCCAAAAAATGTGGAATCCTTTGCATCTATGCTGAGAC...TTCATATTGTGGAGAATGATCTGTACATAGATTTTGGTGGAAAGTTTCATTGTGTATGTAGAAGACCAGAAGTGGATGGAGA|GTTCTCTCTTTAGGAGCAGATGTCCTACCTGAATACAAACTGCAGACACCACGCATCAACAAGTTTACGATATTGCACTACAGCCCTTTCAAGGCAGTCTGGGACTGGCTTATCCTGCTGTTGGTCATATACACTGCTATATTTACTCCCT	out-of-frame	HIVENDLYIDFGGKFHCVCRRPEVDGe|fsl*	.
TALL_VC059	MLLT10	WDHD1	+/+	-/-	10:21670704	14:54957204	splice-site	splice-site	translocation	downstream	downstream	0	2	0	28	54	low	.	.	duplicates(2)	GTGGTGGAAGAAATCCAGGAACAACTGTGTCAGCAGCTAGCCCTTTTCCTCAAG|GTATCAGCCAGTTCCAAAGAACCAGCCATGTCAATGAATTCAGCACGTTCAACTAATATTTTAGACAATATGGGCAAATCATCCAAGAAATCCACTGCACTTAGTCGAACTACAAATAATGAAAAGTCTCCCATTATAAAGCCTCTGATTCCAAAGCCGAAGCCTAAGCAG___GCATCTG	out-of-frame	GGRNPGTTVSAASPFPQ|gisqfqrtshvnefstfn*	.
TALL_VC059	RP11-26J3.4	KCNH7	-/-	-/-	8:80002999	2:162446443	splice-site	splice-site	translocation	upstream	downstream	1	1	0	92	1	low	.	.	duplicates(1)	GCCTAAGACGCGCGCAGGCGGTTTCGCGAGCGCGTTGGAGCGGCACTCGGAGCTTCTACAGAAGGTGGAGCCCCTACAGAAG___GGTTCTCCAAAAAATGTGGAATCCTTTGCATCTATGCTGAGAC...TTCATATTGTGGAGAATGATCTGTACATAGATTTTGGTGGAAAGTTTCATTGTGTATGTAGAAGACCAGAAGTGGATGGAGA|GTTCTCTCTTTAGGAGCAGATGTCCTACCTGAATACAAACTGCAGACACCACGCATCAACAAGTTTACGATATTGCACTACAGCCCTTTCAAGGCAGTCTGGGACTGGCTTATCCTGCTGTTGGTCATATACACTGCTATATTTACTCCCT	out-of-frame	HIVENDLYIDFGGKFHCVCRRPEVDGe|fsl*	.
TALL_VC059	GGNBP2	SRSF1	+/+	-/-	17:36545097	17:58005973	splice-site	splice-site	inversion	downstream	downstream	0	2	0	150	244	low	.	.	duplicates(1)	CGACCACGAAAACGGTGAAGGTCGGAACCGACAGCCTCCTCCGAGAAGG|GACTGCCTCCAAGTGGAAGTTGGCAGGATTTAAAGGATCACATGCGTGAAGCAGGTGATGTATGTTATGCTGATGTTTACCGAGATGGCACTGGTGTCGTGGAGTTTGTACGGAAA	.	.	.
TALL_VC059	BTAF1	HNRNPH3	+/+	+/+	10:92026751	10:68339140	splice-site	splice-site	duplication	downstream	upstream	0	1	1	413	2277	low	.	.	.	CGGGCCCATCGCATTGGGCAG|GTTATGGAGGaTTTGATGACTATGGTGGCTATAATAATTACGGCTATGGGAATGATGGCTTTGcTGACAGAATGAGAGATGGAAGAG___GTATGGGAGGACATGGCTATGGTGGAGCTGGTGATGCAAGTTCAGGTTTTCATGGTGGTCATTTCGTACATATGAGAGGGTTGCCTTTTCGTGCAACTGAAAATGACATTGCTAAT___TTC	out-of-frame	RAHRIGQ|vmedlmtmvaiiitamgmmallte*	.
TALL_VC059	GZMM	RNF126	+/+	-/-	19:549185	19:652884	splice-site	splice-site	inversion	downstream	downstream	1	1	0	137	239	low	.	.	duplicates(1)	GGGAGCTGGACCTCCAAGTGCTGGACACCCGCATGTGTAACAACAGCCGCTTCTGGAACGGCAGCCTCTCCCCCAGCATGGTCTGCCTGGCGGCCGACTCCAAGGACCAGGCTCCCTGCAAG|GATTATATCTGTCCAAGATGCGAGTCTGGTTTTATCGAGGAGCTTCCGGAAGAGACCAG___GAGCACAGAAAATGGTTCTGCCCCCTCCACAGCTCCCACAGACCAGAGCCGGCCACCGTTGGAG___CGCCCCCAGCAGACTGCACGGGCC	in-frame	ELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCK|DYICPRCESGFIEELPEETRSTENGSAPSTAPTDQSRPPLERPQQTAR	.
TALL_VC059	AGPAT2	BRD3	-/-	-/-	9:136687176	9:134045421	splice-site	splice-site	deletion	upstream	downstream	1	0	0	59	26	low	.	.	.	CTGGCGGCGCCGTCGGGCGCCGGGCCGGGCCATGGAGCTGTGGCCGTGTCTGGCCGCGGCGCTGCTGTTGCTGCTGCTGCTGGTGCAGCTGAGCCGCGCGGCCGAGTTCTACGCCAAGGTCGCCCTGTACTGCGCGCTGTGCTTCACGGTGTCCGCCGTGGCCTCGCTCGTCTGCCTGCTGCGCCACGGCGGCCGGACGGTGGAGAACATGAG|AGGAAGATGGATGGCCGAGAGTACCCAG	out-of-frame	MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENMr|grwmaest	.
TALL_VC059	LINC01225	DOCK8	+/+	+/+	1:31509280	9:368018	splice-site	splice-site	translocation	downstream	upstream	1	0	0	27	42	low	.	.	.	CCTCTATGTCCCAcGTGCGATGCCTTTGACAGGCTCTTCTTGGAGGATGTGCGGCTGCCCGAGCTGGATGTAGGCGATTGGCTGGTCTTCCCCTCCATGGGTGCCTACATGTCCTCCATGAGCTCCAGCTTCAATGGCTTCCTGCCcGCCACCATCTGCTACACCATGGGCCCCCAGCTCAG|AAACCTTCTCTATGTCTACCCACAGAGGCTGAACTTTGTAAACAAAC	.	.	.
TALL_VC059	UVSSA	MAEA	+/+	+/+	4:1366431	4:1339074	splice-site	splice-site	duplication	downstream	upstream	0	1	0	16	146	low	.	.	.	GTGGAGGTCCCTGAGAAGGAGGGGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTATG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAGAAGTCTTCCACTTCTCACAAGCCGAGAAGGTGTACATCATGTAGGCCCCACGTCGTGAAGCGCACGCCTCGGGGACGGGCTGCA	out-of-frame	VEVPEKEGYEPHIPDHLRPEY|vsafypsr*	.
TALL_VC059	UVSSA	MAEA	+/+	+/+	4:1355245	4:1339074	splice-site	splice-site	duplication	downstream	upstream	0	1	0	13	146	low	.	.	.	CTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAGAAGTCTTCCACTTC...AGGCCCCACGTCGTGAAGCGCACGCCTCGGGGACGGGCTGCAGTGGGCGGGGAGGCCACGCCTTCCTCCTGTCCCACGCTCCAGCCTGCCGCGGCGTTTCTGTTTCTTGCGACCAAAGAaCCGTG	in-frame	LVLRKYKELDIEPEGGERhR|SLLSIRQDDKVVCPRTKEVFH	.
TALL_VC062	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	22	4	8	342	173	high	.	.	duplicates(5),low_entropy(6),mismappers(8),mismatches(5)	CTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCT	.	.	.
TALL_VC062	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	4	13	10	132	173	high	.	.	duplicates(4),low_entropy(3),mismappers(10),mismatches(6)	CGATGATGGCCAACACCAAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGT	.	.	.
TALL_VC062	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	12	3	0	88	173	high	.	.	duplicates(9),low_entropy(4),mismappers(26),mismatches(5)	GGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGAT...GGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCAC	.	.	.
TALL_VC062	AC013463.2	SCN2A	+/+	+/+	2:165091299	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	9	20	2	616	173	medium	.	.	duplicates(5),low_entropy(1),mismappers(2),mismatches(5)	CAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGG...AGAATGTGTGCTGAAACTGATCTCTCTTCGTTACTACTATTTCACTATTGGATGGAATATTTTTGATTTTG	.	.	.
TALL_VC062	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165331330	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	342	153	low	.	.	duplicates(2),mismappers(1),mismatches(1)	TGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGT...CAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|AACTTGAAGAATCCAGACAGAAATGCCCACCATGCTGGTATAAATTTGCTAATATGTGTTTGATTTGGGACTGTTGTAAACCATGGTTAAAGGTGAAACACCTTGTCAACCTGGTTGTAATGGACCCATTTGTTGACCTGGC	.	.	.
TALL_VC062	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	10	21	3	90	53	medium	.	.	duplicates(4),mismappers(4),mismatches(1)	GGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCC...GGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL_VC062	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	8	9	2	220	495	medium	.	.	duplicates(5)	GGCTGTTGTCGGGCCTCCAGCGGGCGGGGCCGTTGGCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGcTCAGAAGACG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC062	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	30	495	low	.	.	read_through(7)	GCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGG...GCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAG...GGAAAAATTTTCTCCCATTtgGTA	out-of-frame	ARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC062	ACOT11	AC000068.5	+/.	+/.	1:54564371	22:19448420	intron	intron	translocation	downstream	upstream	1	1	1	7	14	medium	.	.	.	.	.	.	.
TALL_VC062	EEF1A1P11	DPYD	+/.	-/.	1:96448449	1:97259325	intron	intron	deletion/5'-5'	downstream	upstream	2	0	1	35	0	medium	.	.	duplicates(2),low_entropy(2),mismappers(1),mismatches(6)	.	.	.	.
TALL_VC062	EEF1A1P11	DPYD-AS1	+/.	+/.	1:96448449	1:97259325	intron	intron	deletion	downstream	upstream	2	0	1	35	0	medium	.	.	duplicates(2),low_entropy(1),mismatches(2)	.	.	.	.
TALL_VC062	AC013463.2(323),SCN2A(30818)	SCN2A	./+	+/+	2:165208584	2:165295773	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	0	53	173	medium	.	.	duplicates(2),low_entropy(1)	GAAAGAACAGAAATATCTTGAACAGGAGAATGGATATAAGAATTGTGGTGTATTCTGAATCTATAGTATCATACTAACATGAAAATGAAAAACTGCAGCTACCCACAGAAATATGCTGGATTTCACAAATCTGAGGCTGAGGACGAAGAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGG...GCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTG	.	.	.
TALL_VC062	ABCC1	ILF3	+/+	+/+	16:16125911	19:10681993	splice-site	splice-site	translocation	downstream	upstream	1	0	1	281	1680	medium	.	.	.	CCTCTCAGTGTCTTACTCATTGCAG___GTCACCACGTACTTGAACTGGCTGGTTCGGATGTCATCTGAAATGG-AACCAACATCGTGGCCGTGGAGAGGCTCAAGGAGTATTCAGAGACTGAGAAGGAG|AGGAGAAGGCAGAGCCCCCCCAGGCTATGAATGCCCTGAT	out-of-frame	LSVSYSLQVTTYLNWLVRMSSEMeptswpwrgsrsiqrlrrr|gegrappgyecp	.
TALL_VC062	ABCC1	ILF3	+/+	+/+	16:16056295	19:10677163	splice-site	splice-site	translocation	downstream	upstream	0	1	0	284	1675	low	.	.	duplicates(1)	GAAGAAGTCTGCCTACCTGTCAGCCGTGGGCACCTTCACCTGGGTCTGCACGCCCTTTCTG|GCTGTAACAGAAGACAAGTACGAAATACTGCAATCTGTCGACGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCTCCATTGTCCCTGACCATCCACCTGACATCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG___AAACGCTATCA	in-frame	KKSAYLSAVGTFTWVCTPFL|AVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETL	.
TALL_VC062	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	8	0	41	24	low	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(3)	CGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTT[t]CGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTG...TGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGgCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAGGTGAGTGGGGCGGGGCAGGGAGCCTA	.	.	.
TALL_VC062	EEF1A1P6	DNAH11	-/-	+/-	7:22510811	7:21833534	exon	intron	deletion/5'-5'	upstream	downstream	0	0	7	2417	2	low	.	.	duplicates(2),low_entropy(7),mismatches(23)	GTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGG...|...TTTTAGTAGAGAtGgGGTTTCATCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAG	.	.	.
TALL_VC062	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	5	0	66	13	low	.	.	duplicates(3),mismatches(1)	CTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGC	.	.	.
TALL_VC062	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	0	152	143	low	.	.	duplicates(2),mismatches(3)	TTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATT	out-of-frame	QLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC062	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	231	143	low	.	.	duplicates(1),low_entropy(1),mismatches(3)	GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACG	in-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMN	.
TALL_VC062	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510691	7:22333980	exon	intron	deletion/read-through	upstream	downstream	0	0	5	1360	7	low	.	.	duplicates(1),low_entropy(8),mismappers(1),mismatches(27)	CTGCTCAGGTGATTATCCTGAACaATCCAGGCCAAATAAaCgCCGGCTtTGCCCCaGTATaGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGT...|...GCGCAGCCG...GACAGACAGC	.	.	.
TALL_VC062	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	114	10	low	.	.	duplicates(1)	GTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGG	out-of-frame	vvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalswqqlw	.
TALL_VC062	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	114	14	low	.	.	.	CTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCAT	out-of-frame	SVSGTEYQVGPTCTTV|caag*	.
TALL_VC062	ANKH	EEF1A1P13	-/-	-/-	5:14734600	5:14652626	intron	exon	deletion/read-through	upstream	downstream	0	0	4	1	190	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(9)	CCGAGTGCTGCCTG...|...GCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTAcTGTTCCTGTTGGCCGAGTGGAGACTGGTgTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACgGAAGTAAA...GTCGAAATGCACCATGAAGCTTTGaGTGAAGCTCTTCCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGAC	.	.	.
TALL_VC062	TRAF5	LINC00467	+/+	+/+	1:211361162	1:211391616	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	139	74	low	.	.	duplicates(2)	TGAATACCCAGTATTTTGTCCCAACAATTGTGCGAAGATTATTCTAAAAACTGAG___GTAGATGAACACCTGGCTGTATGTCCTGAAGCTGAGCAAGACTGTCCTTTTAAGCACTATGGCTGTGCTGTAACG|ACATGGCAGGGAGGTTTAATAGACATGGATAAGAAGTCCACTCACAGAAATCCTGAAGATGCCAGGGCTGGCAAATATGAAG___GTAAACACAAACGAAAGAAAAGAAGAAAGCAAAACCAAAACCAGCACCGATCCCGACATAGATCAGTGACGTCTTTTTCTTCAGATGATCCTATGTTTC	out-of-frame	EYPVFCPNNCAKIILKTEVDEHLAVCPEAEQDCPFKHYGCAVT|twqgglidmdkksthrnpedaragkyegkhkrkkrrkqnqnqhrsrhrsvtsfssddpmf	.
TALL_VC062	TRAF5	LINC00467	+/+	+/+	1:211371470	1:211391616	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	262	74	low	.	.	.	AGTGCATCAATTATTACAAATGGTTAACCAGCAACAAAATAAATTTGACCTGAGACCTTTGATGGAAGCAGTTGATACAGTGAAACAGAAAATTACCCTGCTAGAAAACAATGATCAAAGATTAG|ACATGGCAGGGAGGTTTAATAGACATGGATAAGAAGTCCACTaACAGAAATCCTGAAGATGCCAGGGCTGGCAAATATGAAG___GTAA...AAG___ATGCTGCCAAGGGAAAAATTAAGAAGAAGAGAAGAGAGAAAAaAAATAAATGGaAAAAAAGAAAG___GACAAAATATGAAACACCAAGAAAAAGAGAAGGAAAAAAAGGAGGAAA	out-of-frame	VHQLLQMVNQQQNKFDLRPLMEAVDTVKQKITLLENNDQRL|dmagrfnrhg*	.
TALL_VC062	TRAF5	LINC00467	+/+	+/+	1:211356468	1:211391616	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	99	74	low	.	.	duplicates(1),low_entropy(1)	CCGGCCGCAGCCAGGAGCAGCAGCCGCGCCTGCAGACCGGCCTCGCGGAGCCCGCGCGCCGAGCCCCAC___GTTTTTAAAGACAATTGTTGCAAAAGAGAAGTCCTCAACTTATATGTATATTGCAGCAATGCTCCTGGATGTAATGCCAAGGTTATTCTGGGCCGGTACCAG|ACATGGCAGGGAGGTTTAATAGACATGGATAAGAAGTCCACTCACAGAAATCCTGAAGATGCCAGGGCTGGCAAATATGAAG___GTAAACACAAACGAAAGAAAAGAAGAAAGCAAAACCAAAACCAG	out-of-frame	VFKDNCCKREVLNLYVYCSNAPGCNAKVILGRYQ|twqgglidmdkksthrnpedaragkyegkhkrkkrrkqnqn	.
TALL_VC062	CTD-2231H16.1	PLEKHG4B	+/+	+/+	5:113448	5:154875	splice-site	splice-site	deletion/read-through	downstream	upstream	0	4	0	130	296	low	.	.	mismatches(1)	CCAGGCAGAGTTCGGGGAAAGCGTCGGAGTTCGGGAGACCAGGGTCCAGCATGGGTTTCAGCACAGCAGACGGCGGGGGCGGCCCAGGCGCCCGG___GATCTGGAATCTCTTGATGCCTGTATCC...CTGCACTGCCTCACCAGCTTCCTCCTCCCAGCCAAGAGGGCCCTGCAGCACCTGCAGCAGGAAGCCTGT|TGTGAGGTCGTGAGCTCCCTGAAGGCCGTGCACAAATTTGTTGACAGCTGCCAGCTGACCGCAGACCTCGACGGCTCCTTTCCCTACAGCCATGGTGACTGGATCTGCTTCCGTCAG___AGGCTGGAACACTTCGCTGCAAACTGTGAAGAAGCCATCATTTTCCTACAGAATTCATTCTGC	.	.	.
TALL_VC062	NDUFB4	STXBP5L	+/+	+/+	3:120601396	3:120979072	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	4	321	2	low	.	.	low_entropy(1),mismatches(1)	GATGTTTAGTATTTGAGTGATAGGTTCACTTTCTAGGGACCAGCTGCAGCTCCTTCTCTTGAAGATTGCCACCAGTGCCCCTCCCACCTTGGGGCTGTCCTCTGCCTTCCCTTCCTCcCTTCT...|...CAAAGCTGgCAGACAGGGACATTTAAGTCTGCAGAGGTTACTGCTGTCTTTTTGTTTGTCTGTGCCcTtCCcCCAGAGGTGGAGCCTACAGAGGCAGGCAGGCCTCCTTGAGCTGTGGTGG	.	.	.
TALL_VC062	LINC00152	RGPD2	+/.	-/.	2:87600015	2:87776115	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	7	73	low	.	.	mismatches(1)	.	.	.	.
TALL_VC062	ZNF37A	RP11-508N22.13(9343),RP11-508N22.6(1934)	+/+	./+	10:38115290	10:38159636	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	145	5	low	.	.	low_entropy(1),mismatches(1)	GAGAACTACAGCCACCTTGTCTCAGTAG___GGTATTGCATTCCTAAACCAGAAGTGATTCTCAAGTTGGAGAAAGGCGAGGAGCCATGGATATTAGAGGAAAAATTTCCAAGCCAGAGTCATCTGG|GTTGTATCAACTGTTGGGGTGATCAGACCCAACACCAGGCCATGGGGTCTATGAAGTCTGGCGGCATCAAAGGAATGAGGAAAGACAAGTTAAGAGAGAAAGTGGGACCAGGGGGCCAATGCTAGTATGGAGGCTGCGAAGGCCCCAAG	out-of-frame	ENYSHLVSVGYCIPKPEVILKLEKGEEPWILEEKFPSQSHL|gcincwgdqtqhqamgsmksggikgmrkdklrekvgpggqc*	.
TALL_VC062	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87036400	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	2	0	1	133	25	low	.	.	duplicates(1),mismappers(1),mismatches(2)	GGCAACCAGTGCAGTCCTTATGGAGCAAATTAAG___CTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTTTCTATCAACACCACGAGAGAAA	out-of-frame	ATSAVLMEQIKLLKSEIRRLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|gfyqhher	.
TALL_VC062	RP11-466H18.1	SOX6	-/-	-/-	11:16974767	11:16417286	exon	intron	deletion	upstream	downstream	0	0	3	1067	1	low	.	.	duplicates(1),low_entropy(2),mismatches(7)	CAAGCATGGTTAACGTCCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCATAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTACGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAGGCTAAAACTACAAAGAAGATTGTGCTAAGGCTTGAGTGCGTTGAGCCCAACTGCAGATCTAAGAGAATGC...|...GATAGGATGGGCC	.	.	.
TALL_VC062	RBFOX3	CYTH1	-/-	-/-	17:79099643	17:78757006	exon	intron	deletion/read-through	upstream	downstream	0	0	3	1	17	low	.	.	mismappers(1),mismatches(6)	CAGGAAGCCAGA...|...AAAAAAAAAAAAAAAAAAGAAAAAAAAGAAAAAAATTCAAACCTTGAAATTCCGCCTTGTGAATAATCTTAGTCTAATTTTTGCCATGTTTATTGGAATATAGGCC	.	.	.
TALL_VC062	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121447	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	2	5	low	.	.	mismappers(1)	CAGAAAATTCTTGCTGCTGTATTGAGAACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGC...ACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|ATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGG	.	.	.
TALL_VC062	ICE2	RORA	-/.	-/.	15:60464819	15:60795534	intron	intron	deletion/read-through	downstream	upstream	0	0	2	6	0	low	.	.	mismappers(1)	.	.	.	.
TALL_VC062	NINJ2	WASH7P	-/-	-/-	12:597259	12:21909	intron	intron	deletion	upstream	downstream	0	0	2	1	26	low	.	.	mismappers(1)	TACACATGGG...|...GAGAAGGAAAGCAAGGGATGCTTGGAGATGGTCCcCTCCGGGGCAGATAGAGGAAGATGGACCCTTAGTGAGACCACGCGCAGAACAGGCTGGGTGAGCCACTTCCGTCCCTGATGTCCACAGtGG	.	.	.
TALL_VC062	SLC4A2	PRKAG2	+/+	-/+	7:151075442	7:151638394	CDS	intron	deletion/5'-5'	downstream	upstream	0	0	2	205	2	low	.	.	mismappers(1),mismatches(1)	GCTCATCGTGGCCATGGGCGGCATCTGTGCCCTCTTTGGCCTGCCCTGGTTGGCTGCTGCCACTGTCCGCTCTGTCACTCACGCCAACGCGCTCACTGTCATGAGCAAGGCTGTGGCACCTGGGG...|...GGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCA	.	.	.
TALL_VC062	KAZN	PLEKHM2	+/.	+/.	1:15090150	1:15711617	intron	intron	deletion	downstream	upstream	0	0	2	0	12	low	.	.	mismappers(1),mismatches(3)	.	.	.	.
TALL_VC062	GABPB1-AS1(23757),AHCYP7(21426)	USP8	./.	+/.	15:50395959	15:50427707	intergenic	intron	deletion/read-through	downstream	upstream	0	0	2	1	4	low	.	.	mismappers(2),mismatches(1)	.	.	.	.
TALL_VC062	CHD7	CLVS1	+/+	+/+	8:60824790	8:61203334	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	1	2131	low	.	.	low_entropy(1),mismatches(1)	CTTCCTGATTA...|...CGTGTTTGATAAATGTTGTCCAGGTTCTATTGCCAAGAATGTGTTGTCCAAAATGCC?GTTTAGTTTTTAAAGATGGAACTCCACCCTTTGCTTGGTTTTAAGTATGTATGGAATGTTATGATAGGACAtAGTAGTAGCGGTGGTCAGACATGGAAATgGTG	.	.	.
TALL_VC062	FCHSD2	ARAP1	-/-	-/-	11:72896927	11:72792199	intron	intron	deletion/read-through	upstream	downstream	0	0	2	4	1	low	.	.	low_entropy(1),mismappers(2),mismatches(7)	CGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG...|...CGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGGGGCAGGAGAATGGCG	.	.	.
TALL_VC062	MYH9	RBFOX2	-/-	-/-	22:36281645	22:36006189	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	2	819	1	low	.	.	low_entropy(2),mismappers(2),mismatches(10)	GCAAAATAAGGTTTTCTTTTTTCCCCTTTCaTGTAATAAATGATAAAATgCCGA...|...GCTTTCAAAAAT	.	.	.
TALL_VC062	TTC37	MCTP1	-/-	-/-	5:95464678	5:95241697	CDS	intron	deletion/read-through	upstream	downstream	0	0	2	28	0	low	.	.	duplicates(6),low_entropy(59),mismappers(1),mismatches(73)	AGACACGGCGTCTTTTGGAAAGAGTGGTATATCAGCCTGGGTATCCCAAATCTATTGCATCAACTGCACGTTGGTACCTACTGAGACACTTATATGCCAAAGATGACTATGAGCTTATTGAC___GTGC...|...AATTTAATTGGGGAAAA	.	.	.
TALL_VC062	RAB3GAP1	URI1	+/+	+/+	2:135093693	19:29985223	splice-site	splice-site	translocation	downstream	upstream	0	1	1	40	138	low	.	.	.	GTATGAATAATGACTTTCCTCCAAGAGCACATTGCCTGGTAAGATG|GAAGAAGGTAGATAATGACTATAATGCCCTTCGAGAAAGACTCAGCACCTTGCCTGATAAATTGTCTTATAATATAATG___GTACCATTTGGCCCTTTTGCCTTCATGCCAGGAAAACTTGTCCAT	in-frame	MNNDFPPRAHCLVRw|KKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLV	.
TALL_VC062	CCDC57	ASPSCR1	-/-	+/+	17:82163200	17:82009037	splice-site	splice-site	inversion	upstream	upstream	0	1	0	86	79	low	.	.	.	CGGGGACAGAGTGCAGCTCCTAAACCTGCTGGTGACACGACTCAGACAGAAG|CCCGTGGACCGGGAGCCCGTGGACCGGGAGCCGGTGGTGTGCCACCCCGACCTGGAGGAGCGGCTGCAGGCCTGGCCAGCGGAGCTGCCTGATGAGTTCTTTGAGCTGACGGTGGACGACGTGAGAAGACGCTTGGCCC	in-frame	GDRVQLLNLLVTRLRQK|PVDREPVDREPVVCHPDLEERLQAWPAELPDEFFELTVDDVRRRLA	.
TALL_VC062	ASPSCR1	CCDC57	+/+	-/-	17:81985607	17:82134194	splice-site	splice-site	inversion	downstream	downstream	0	1	0	97	110	low	.	.	duplicates(1)	CTCAGCCATTTTCCACAGATCAG|GGTGGCTGTTGCACCACGCCCTCCCTCCTGCCCCTGAGGCCCGGAAGCCAGGCGAGGAGCCCAGGAGGCCTTTGGATCGCAGCCCACCTTTGGGACAGGTGCAGCCCCATTTTACATCTCAG___GACGCCAAGAGTGC	out-of-frame	LSHFPQIr|vavaprppscp*	.
TALL_VC062	SLC38A1	COPS3	-/-	-/-	12:46239679	17:17260474	splice-site	splice-site	translocation	upstream	downstream	0	1	0	135	487	low	.	.	.	GGATGATAACATTAGCAATGACTCCAATGATTTCACCGAAGTAGAAAATGGTCAGATAAATAG|CCTCTTAGCAATGCATACCACGAGTTAGCACAAGTGTATTCAACCAACAACCCCTCAGAACTCCGAAACCTGGTGAATAAGCACAGTGAAACCTTCACTCGCGATAACAACATGGGGCTGGTGAAGCAATGCTTG	out-of-frame	DDNISNDSNDFTEVENGQINs|llamhtts*	.
TALL_VC062	SH3GLB2	PPP6R2	-/-	+/+	9:129014771	22:50437506	splice-site	splice-site	translocation	upstream	upstream	1	0	0	234	170	low	.	.	.	TGGGCCGGGGGCTGCCGGCTGCGCTCGGGCCGTGCGCGGCGGtCGTGCGGGCACGCCATGGACTTCAACATGAAGAAGCTGGCGTCGGACGCGGGCATCTTCTTCACCCGGGCGGTGCAG___GGA...GCGGAGAGGGATTTTATCCACACGGCCgCCATCAGCTTCCTCACACCCTTGCGCAACTTCCTGGAGGGGGACTGGAAGACCATCTCG|GCCTTCTCTGACTACCAGATCCAGCAGATGACAGCCAA	in-frame	AERDFIHTAaISFLTPLRNFLEGDWKTIS|AFSDYQIQQMTA	.
TALL_VC062	CYSLTR2	RFX3	+/+	-/-	13:48654017	9:3395596	splice-site	splice-site	translocation	downstream	downstream	0	1	0	460	36	low	.	.	.	CAGCTGAAAGACAGAGACCTTCAG|AGACCATCATGCAGACATCAGAGACTGGGTCGGACACAGGCTCGACAGTGACCTTACAAACATCTGTGGCTAGTCAAGCAGCAGTGCCTACGCAGGTGGTACAGCAAGTACCAGTACAACAACAGGTAAGGAGCTGCTGCTCTTAGAAAAG	.	.	.
TALL_VC062	NEK7	SMC3	+/+	+/+	1:198232637	10:110596398	splice-site	splice-site	translocation	downstream	upstream	1	0	0	114	250	low	.	.	duplicates(1)	CCGCCCGCCCAAGGTCTCTCGCGGGCGGGAGAACGGAAAACTCCCAACTTCCTG___AGTTCTAAAGTTCCTGTTGCTTCAGACAATGGATGAGCAATCACAAGGAATGCAAGGGCCACCTGTTCCTCAGTTCCAACCACAG|GTGACCAAGTCAGCCATCGGGGTGCTCTAACTGGGGGTTATTA	out-of-frame	MDEQSQGMQGPPVPQFQPQ|vtksaigvl*	.
TALL_VC062	B3GNTL1	TBCD	-/-	+/+	17:83014454	17:82900651	splice-site	splice-site	inversion	upstream	upstream	1	0	0	75	120	low	.	.	.	CTGGAAGATTCTGGTGTCCAtGTGATCATTGGGGGGCACGATTCTCCCTCTCCTAGAGGCG___TCGGATACGCTAAAAATCAAGCAGTTGCCCAGAGCTCAGGGTCTTACCTTTGCTTTTTGGATTCG...GCCGTTCAGCACCCGTCGAGC|TGTGTTTATTGCCGGCTTTCCTGAGTACACGCAGCCAATGATAGACCACCTGGTTACCATGAAGATCAGCCACTGGGATGG___GGTCATCCGAGAGTTGGCTGCGAG	out-of-frame	AVQHPSS|cvycrls*	.
TALL_VC062	B3GNTL1	TBCD	-/-	+/+	17:83005115	17:82924939	splice-site	splice-site	inversion	upstream	upstream	0	1	0	62	408	low	.	.	.	CTCCACCGAACGATACACACGTTGGATCAACCAGCTGACGCCGGAGCAGCTCCTAACCCAG|AGGAGCTGATCACGCAGTACCTGGCTGAGCTTCGGAACCCCGAGGAGATGACTCGCTGTGGCTTCTCGTTGGCCTTGGGCGCCCTTCCAGGCTTCCTTCTGAAAGGCCGGCTCCAGCAG___GTTCTCACAGG	out-of-frame	STERYTRWINQLTPEQLLTQ|rs*	.
TALL_VC062	DHX30	SMARCC1	+/+	-/-	3:47810711	3:47772936	splice-site	splice-site	inversion	downstream	downstream	0	1	0	200	128	low	.	.	.	CAGCTTTCCCTCCTGGCCAGAAATGTTCAGCCTGGACTCATTCAGAAAAG|TATGTTCATGCGGATGCTCCTACCAATAAAACACTGGCTGGGCTGGTGGTGCAGCTTCTTCAGTTCCAGGAAGATGCCTTTGGGAAGCATGTCACCAACCCGGCCTTCACCAAACTCCCT___GCAAAGTGTTTCATGGATTTCAAAGCTGGAGGCGCC	out-of-frame	MFSLDSFRK|vcscgcsyq*	.
TALL_VC065	MLLT6	KMT2A	+/+	+/+	17:38709575	11:118497936	splice-site	splice-site	translocation	downstream	upstream	13	11	3	78	65	high	.	.	duplicates(1)	ATTGCGCTGTGTCCTGCAGACCTGTTACATCTGCGAGGAGCAGGGCCGGGAGAGCAAGGCGGCCTCGGGAGCCTGCATGACCTGTAACCGCCATGGATGTCGACAAGCTTTCCACGTCACCTG___TGCCCAAATGGCAGGCTTGCTGTGTGAGGAAGAAGTGCTGGAGGTGGACAACGTCAAGTACTGCGGCTACTGCAAATACCACTTCAGCAAGATG|GATGCTGGTCGTTTACTATATATTGGCCAAAATGAGTGGACACATGTAAATTGTGCTTTGTGGTCAGCGGAAGTGTTTGAAGATGATGACGGATCACTAAAGAATGTGCATATGGCTGTGATCAGGGGCAAGCAGCTG___AGATGTGAATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCACA	in-frame	lrcvlqTCYICEEQGRESKAASGACMTCNRHGCRQAFHVTCAQMAGLLCEEEVLEVDNVKYCGYCKYHFSKM|DAGRLLYIGQNEWTHVNCALWSAEVFEDDDGSLKNVHMAVIRGKQLRCEFCQKPGATVGCCL	.
TALL_VC065	KMT2A	MLLT6	+/+	+/+	11:118484975	17:38711847	splice-site	splice-site	translocation	downstream	upstream	2	1	0	54	55	high	.	.	.	CAGGATCAGAGTGGACTTTAAG___GAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAGGCTTAGGAATCTTGACTTCTGTTCCTATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGGGCATGTAGAG|AAGACATCCCGGCACAGCAGCGGGGGAGGCGGAGGAGGCGCTGGAGGAGGAGGTGGCAGCATGGGGGGAGGTGGCAGTGGTTTCATCTCTGGGAGGAGAAGCCGGTCAGCCTCACCATCCACG	in-frame	RIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVE|KTSRHSSGGGGGGAGGGGGSMGGGGSGFISGRRSRSASPS	.
TALL_VC065	KMT2A	MLLT6	+/+	+/+	11:118484314	17:38711847	splice-site	splice-site	translocation	downstream	upstream	2	0	0	96	55	low	.	.	.	GGGAATGTCTCGGCCCCTGGGCCTGAATCCAAACAGGCCACCACTCCAGCTTCCAGGAAGTCAAGCAAGCAGGTCTCCCAGCCAGCACTGGTCATCCCGCCTCAGCCACCTACTACAGGACCGCC...AGTATCCCTGTAAAACAAAAACCAAAAGAAAAG___GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG|AAGACATCCCGGCACAGCAGCGGGGGAGGCGGAGGAGGCGC	in-frame	SIPVKQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFK|KTSRHSSGGGGGG	.
TALL_VC065	MLLT6	KMT2A	+/+	+/+	17:38709276	11:118497936	splice-site	splice-site	translocation	downstream	upstream	0	1	0	110	65	low	.	.	.	CGGGAGAGCAAGGCGGCCTCGGGAGCCTGCATGACCTGTAACCGCCATGGATGTCGACAAGCTTTCCACGTCACCTG|GATGCTGGTCGTTTACTATATATTGGCCAAAATGAGTGGACACATGTA...GAAGTGTTTGAAGATGATGACGGATCACTAAAGAATGTGCATATGGCTGTGATCAGGGGCAAGCAGCTG___AGATGTGAATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCACATCCTGC	out-of-frame	RESKAASGACMTCNRHGCRQAFHVTw|mlvvyyilakmsghm	.
TALL_VC065	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	5	7	1	89	45	high	.	.	low_entropy(3),mismappers(8)	GGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___...TATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGC...___...CCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAG	out-of-frame	PGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC065	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	11	31	4	123	66	medium	.	.	duplicates(1),low_entropy(4),mismatches(2)	GCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAG	.	.	.
TALL_VC065	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	6	6	1	123	358	medium	.	.	duplicates(1)	GCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC065	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	13	358	low	.	.	read_through(6)	GCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGT	out-of-frame	KGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC065	RNASEH2B-AS1	RNASEH2B	-/+	+/+	13:50866386	13:50927407	intron	splice-site	deletion/read-through/3'-3'	downstream	upstream	8	4	0	35	327	medium	.	.	duplicates(1),mismatches(2)	CGTGTCTGAAGTGTCCCGGTCTGGGTGAGTATGGGTGTATGACAGTGCATCCTGCAATGGGATGGTGTCCTGTCCAGGGCTGGTTCCTGCCTTGACTCTGCGCTGCCTGGAGAGGCTCCAGCCAGTCTGGACCGTAAAATGGAATAAGCAG|AATATTTAAAAGATGCTTCAAAGAAGATGAAAAATGGGCTAATGTTTGTAAAACTGGTTAACCCCTGTTCAG___GAGAAGGAGCCATTTACTTGTTCAATATGTGTCTACAGCAGCTGTTTGAAGTAAAAGTTTTCAAGGAAAAACACCATTCTTGGTTTATAAATCAATCAGTTCAATCAG___GAGGTCTTCT	.	.	.
TALL_VC065	SGK3	ST7L	+/+	-/-	8:66840247	1:112611003	splice-site	splice-site	translocation	downstream	downstream	0	2	0	30	98	medium	.	.	.	CGCTGCTGAAATTGCTAGTGCATTGGGTTACTTACATTCCATCAAAATAGTATACAG___AGACTTGAAACCAGAAAATATTCTTTTGGATTCAGTA|ATATTTGAATGGTGGTACTTCCATAAGCATGGCACATCTTTTATTGAGCAAGTATCTGTAAGCCATTTGCAACCACTGATGGGAGGAACAGAGAGCAGCATTTCAGAACCAGGTTCTCCTTCGAGGAACAGAGAAA	in-frame	AAEIASALGYLHSIKIVYRDLKPENILLDSV|IFEWWYFHKHGTSFIEQVSVSHLQPLMGGTESSISEPGSPSRNRE	.
TALL_VC065	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	6	0	38	15	low	.	.	duplicates(1),mismatches(2)	GTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCC	.	.	.
TALL_VC065	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	5	3	0	29	64	low	.	.	low_entropy(1),mismappers(2),mismatches(2)	GGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTG___...?AA???????T?TTTTTTTTT?GTCGCTCTCGGGATCGC?CTTCTGC...___...?TTGTTTT?GACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGT	.	.	.
TALL_VC065	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	7	0	117	18	low	.	.	duplicates(2)	CACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGC	.	.	.
TALL_VC065	DNAH11	EEF1A1P6	+/+	-/+	7:21866470	7:22510556	CDS	3'UTR	deletion/5'-5'	downstream	upstream	0	0	6	1	967	low	.	.	low_entropy(3),mismappers(1),mismatches(20)	ATCATATTACAGG...|...GAGACCgTTCTTCCACCACTGATTAAGAGTGGGGTGGCAGGTATTAGGGATAATATTCATTTAGCCTTCTGAGCTTTCTGGGCAGACTTGGTGACCTTGCCAGCTCCAGCAGCCTTCTTGTCCA___...ACCCAAAGGTGGATAGTCTGAGAAGCTCTCAACACACATGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAACGGCG	.	.	.
TALL_VC065	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	0	57	8	low	.	.	.	GGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCC	out-of-frame	EYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrl	.
TALL_VC065	EEF1A1P13	TRIO	-/-	+/-	5:14652273	5:14419322	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	93	2	low	.	.	low_entropy(1),mismatches(12)	GCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTAcTGTTCCTGTTGGCCGAGTGGAGACTGGT?TTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACA...CTTTGaGTGAAGCTCTTCCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCC...|...GGCTATGACCCTG	.	.	.
TALL_VC065	SETD8	ZSWIM7	+/.	-/.	12:123408620	17:15992814	3'UTR	intron	translocation	upstream	upstream	3	0	0	24	4	low	.	.	.	.	.	.	.
TALL_VC065	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	2	0	28	5	low	.	.	low_entropy(1),mismatches(1)	GGAACTTTTGATGGAGTTCTTATGGATCTTGGGTGTTCCTCCATGCAACTTGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___GT...AGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCC	out-of-frame	ENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL_VC065	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28361937	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	28	6	low	.	.	duplicates(1)	AGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTC...GTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GGTTTTTATGGAGGACACAAACAAATGGAAAAACATTCCATGCTCATGTATAGAAAGAATCAATATTGTGA	out-of-frame	ENRFSNCSGTQHLPHHQNPAACQHRCr|hfppinylfsqlh	.
TALL_VC065	CYP2D6	CYP2D7(46),CYP2D8P(5263)	-/.	./.	22:42130949	22:42144623	5'UTR	intergenic	deletion/read-through	downstream	upstream	3	0	0	20	6	low	.	.	mismappers(1),mismatches(2)	.	.	.	.
TALL_VC065	BRE	PPP1CB	+/.	+/.	2:28094525	2:28784919	intron	intron	deletion	downstream	upstream	0	0	3	1	28	low	.	.	mismappers(1),mismatches(5)	.	.	.	.
TALL_VC065	RP13-895J2.9(1593),RP13-895J2.10(6819)	GALNT9	./-	-/-	12:132353915	12:132286430	intergenic	splice-site	deletion/read-through	upstream	downstream	1	1	0	4	4	low	.	.	.	GGGAGGCTTAGCAAAAAGTCATTTCAGGGCCAGGGaCACTTCCTGATCAAAATTCGGGATTACTGCTGTAATCACTGCTGGTGGAACGGGGCCACGGACCCTGCCCATGACCGCCTCCCTTGGGGG...AGAAAAGCCAATTTTCTGTAATCCTTCCTGTCTCTCCAGATGATGTTGAGCTGTGGAGGAGATTAATCAGAACAACACAG|GCCTTGCCAAGCCCATCGGCCTGGTGGAGGGGCCAGGAGGtCTGGGCCAGGGTGGCTTGGCGGCCACCCTGCGTGATGACGGCCAGGAGGCGGAAGGCAAGTATGAG	.	.	.
TALL_VC065	ZNF286A	ZSCAN2(1712),SCAND2P(1943)	+/+	./-	17:15706436	15:84629508	CDS	intergenic	translocation	downstream	downstream	0	0	2	41	3	low	.	.	.	GGATTCTCCCCATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCTCTGCGCCTCACGGCCAGATCCCAG___GAAACAGTGACATTCAAGGATGTGGCCATGGACTTTACACCAGAGGAGTG...|...TTAGAATGCACTTCCAAACTAGAAACCAAACGGGGTGCCTGCAAGGGGGTCGTTCTCCTTGTCTTTAGAAAAAGGGAATCGAGAAGAACCTTTAGAATGAACCTCCGAACTACAATTAGGATCCTA	.	.	.
TALL_VC065	ZFP14	LINC00665	-/-	-/-	19:36360435	19:36323376	splice-site	intron	deletion/read-through	upstream	downstream	0	1	1	42	1	low	.	.	.	GAACTACAGCAACTTCATTTCACTAG___CAGGACCTTCCATTTCTAAACCAGATGTGATTACCTTATTGGATGAAGAAAGGAAGGAACCTGGGATGGTTGTGAGGGAAGGGACAAGAAGATACTGCCCTG|TAGGAATCAGGAGCTTCTTTTGCTGTTCTTCTGTTTTGGATGCATTGGAAGGTAAGTTTCCTTGTGAACCATATTTTGGACTCATTTTGTAGGCTTTGCCAAATGGCCTTTTTACCCTCCTATAATGCATTTTCTTTGGATATTCTCCTAGATTCT	out-of-frame	NYSNFISLAGPSISKPDVITLLDEERKEPGMVVREGTRRYCP|vgirsffccssvldalegkfpcepyfglil*	.
TALL_VC065	ZFP14	LINC00665	-/-	-/-	19:36360435	19:36330492	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	42	10	low	.	.	duplicates(1),read_through(6)	GGGAATTCCTGGATCCTGCTCAGAGGGACTTATATAGGGATGTAATGTGGGAGAACTACAGCAACTTCATTTCACTAG___GACCTTCCATTTCTAAACCAGATGTGATTACCTTATTGGATGAAGAAAGGAAGGAACCTGGGATGGTTGTGAGGGAAGGGACAAGAAGATACTGCCCTG|GTACGACATTTGGAGGCCCCAGCGAGAAACGTCACCGGGAGAAACGTCACCGGGCGAGAGCCGGGCCCGCTGTGTGCTCCCCCGGAAGGACAGCCAGCTTGTAGGGGGGAGTGCCACCTGAAAAAAAAATTTCCAGGTCCCCAAAGGGTGACCGTCTTCCGGAGGACAGCG	out-of-frame	EFLDPAQRDLYRDVMWENYSNFISLGPSISKPDVITLLDEERKEPGMVVREGTRRYCP|gttfggpsekrhrekrhraragpavcspgrtasl*	.
TALL_VC065	ZNF286A	ZSCAN2(1712),SCAND2P(1943)	+/+	./-	17:15706436	15:84629508	CDS	intergenic	translocation	downstream	downstream	0	0	2	41	3	low	.	.	.	GGATTCTCCCCATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCTCTGCGCCTCACGGCCAGATCCCAG___GAAACAGTGACATTCAAGGATGTGGCCATGGACTTTACACCAGAGGAGTG...|...TTAGAATGCACTTCCAAACTAGAAACCAAACGGGGTGCCTGCAAGGGGGTCGTTCTCCTTGTCTTTAGAAAAAGGGAATCGAGAAGAACCTTTAGAATGAACCTCCGAACTACAATTAGGATCCTA	.	.	.
TALL_VC065	OR7E14P	NUCB2	+/+	+/+	11:17049540	11:17248149	intron	intron	deletion/read-through	downstream	upstream	0	0	2	1	0	low	.	.	mismappers(2),mismatches(2)	TTCTGCTTATGAACTATCAACTTTAATTTCACTTTTAGATGGCATGGTCTCAGCTGTTATGCAGTGTTTATAGAGTTCTAAATCAAGGGAATTTGTGGCATTCTATTAGAATAAAATAAAATATTT...|...AGGTACATGCC	.	.	.
TALL_VC065	REV1	AFF3	-/.	-/.	2:99468275	2:99563817	intron	intron	deletion/read-through	downstream	upstream	0	0	2	2	1	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	.	.	.	.
TALL_VC065	SYNE1	PLCXD1	-/-	+/+	6:152151553	X:284167	splice-site	splice-site	translocation	upstream	upstream	0	1	1	1833	129	low	.	.	.	ATTGGCCAGCGTGAGGAGTTTGAGACTGCGCGGGACAGCATTCTGGTCTGGCTCACAGAGATGGATCTGCAGCTCACTAATATTGAACATTTTTCTGAGTGTGATGTTCAAGCTAAAATAAAGCAACTCgAG|GTTGCCCAGGGCTCACCTCTGATGGGcGGGCAGGTGAGCGCTTCCAACAGCTTCTCGAGGCTGCACTGCAGAAATGCCAACGAGGACTGGATGTCGGCACTGTGTCCCCGGCTCTGGGATGTGCCCCTCCACCACCTCTCCATCCCAG___GGAGCCACGACACGATGACGTACTGCCTGAACAAGAAGTCCC	in-frame	IGQREEFETARDSILVWLTEMDLQLTNIEHFSECDVQAKIKQLe|vaqgsplMGGQVSASNSFSRLHCRNANEDWMSALCPRLWDVPLHHLSIPGSHDTMTYCLNKKS	.
TALL_VC065	DDX3Y	VAPA	+/+	+/+	Y:12904981	18:9950395	splice-site	splice-site	translocation	downstream	upstream	0	2	0	997	423	low	.	.	.	GTGGTGGTGAAAAATGACCCTGAACTGGACCAGCAG|AATGATATGGAACCTAGCAAAGCTGTTCCACTGAATGCATCTAAGCAAGATGGACCTATGCCAAAACCACACAGTGTTTCACTTAATGATACCGAAACAAGGAAACTAATGGAAGAGTGTAAAAGACTTCAGGGAGAAATGATGAAGCTATCAGAAGAAAATCGGCACCTGAGA___GATGAAGGTTTAAGGCTCAGAAAGGTAGCACATTCGGATAAAC	in-frame	VVVKNDPELDQQ|NDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRHLRDEGLRLRKVAHSDK	.
TALL_VC065	PPP2R3B	BSG	-/-	+/+	X:338604	19:579500	splice-site	splice-site	translocation	upstream	upstream	1	0	0	138	396	low	.	.	.	TTCGACACCTTCTTCAACATCGAGAAGTACCTCGACCACGAGCAGAAAGAGCAGATCTCCCTGCTCAGG___GACGGTGACAGCGGCGGCCCCGAGCTCTCGGACTGGGAGAAGTACGCGGCCGAGGAGTACGACATCCTGGTGGCCGAGGAGACcGtGGGAGAGCCCTGGGAGGACGG|CCGGCACAGTCTTCACTACCGTAGAAGACCTTGGCTCCAAGATACTCCTCACCTGCTCCTTGAATGAC	out-of-frame	FDTFFNIEKYLDHEQKEQISLLRDGDSGGPELSDWEKYAAEEYDILVAEETvGEPWEDg|rhslhyrrrpwlqdtphllle*	.
TALL_VC065	PRKAR1B	SUN1	-/-	+/+	7:579256	7:832505	splice-site	splice-site	inversion	upstream	upstream	0	1	0	138	111	low	.	.	.	GGAGAGAAAATcGTGGTCCAGGGAGAGCCTGGGGACGACTTTTACATCATCACGGAG|TATGGTTTGAAGTGGTGAACATGGATTTTTCTCGGCTTCACATGTACAGTCCTCCCCAGTGTGTGCCGGAGAACACGGGCTACACGTATGCGCTCAGGTGAGTGTGCACCTGCACGTGGGGTCCTGGC	out-of-frame	GEKIVVQGEPGDDFYIITE|yglkw*	.
TALL_VC065	PRKAR1B	SUN1	-/-	+/+	7:596146	7:848418	splice-site	splice-site	inversion	upstream	upstream	0	1	0	168	87	low	.	.	duplicates(1)	GGGGGATCGACCGGGACAGCTACCGGCGCATCCTTATG|GCGGTGCGTCTTTCTACGTGAATAGGATTTTGTGGCTGGCCAGATACACTGCATCATCTTTTTCATCATTTTTAGTTCAACTTTTTCAAGTGGTTTTAATGAAGCTCAGTTATGAATCAGAAAATTACAAATTGAAAACTCATGAATCAAAAGAT	out-of-frame	GIDRDSYRRILM|avrlst*	.
TALL_VC065	PPP6R2	PCNT	+/+	+/+	22:50432329	21:46326377	splice-site	splice-site	translocation	downstream	upstream	0	1	0	124	29	low	.	.	.	AGAAGTGCTGCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|CTTGCTCACTTCCGACAGAGAAAAACAAAAGGTGACAGTTCGCATTCGGAGAAAAAGACGGCGAAGAGGAAGGGCTCGGCTGTCGATGCGTCTGTCCAGGAGGAGAGTCCGGTAACCAAGGAGGAC	out-of-frame	KCCLVQRILEAWEANDHTh|lltsdrekqkvtvrirrkrrrrgrarlsmrlsrrrvr*	.
TALL_VC065	MYO18A	ZNF746	-/-	-/-	17:29082316	7:149477755	splice-site	splice-site	translocation	upstream	downstream	0	1	0	796	30	low	.	.	.	AAAAAACAAGGGACCTTCCAAGGCAGCTTCTGATGATGGCAGCTTAAAGAGTTCCAG|GCTCGGGGCCCCCAGTTCCCGCCCCAGACCTCTTGATGCAGATCAAGCAGGAGGGTGAGCTCCAGCTCCAGGAGCAGCAGGCCCTGGGCGTGGAGGCGTGGGCAGCCGGGCAGCCAGATATTGG	out-of-frame	KNKGPSKAASDDGSLKSSr|lgapssrprpldadqagg*	.
TALL_VC065	SNAPC1	PDE7A	+/+	-/-	14:61762588	8:65719495	splice-site	splice-site	translocation	downstream	downstream	1	0	0	130	594	low	.	.	.	CGGGCTTCGGAGGCGTGCGGGCTTCGGGTGCCATGGGGACTCCTCCCGGCCTGCAGACCGACTGCGAGGCGCTGCTCAGCCGCTTCCAGGAGACGGACAGTGTACGCTTCGAGGACTTCACGGAGCTCTGGAGAAACATGAAGTTCGGGACTATCTTCTG|GTTTTATGACTTACCTAGTGGAGCCTTTATTTACAGAAaGGGCC	out-of-frame	MGTPPGLQTDCEALLSRFQETDSVRFEDFTELWRNMKFGTIFw|fydlpsgafiyrkg	.
TALL_VC065	SNAPC1	PDE7A	+/+	-/-	14:61762588	8:65727301	splice-site	splice-site	translocation	downstream	downstream	1	0	0	130	345	low	.	.	.	CGGGCTTCGGGTGCCATGGGGACTCCTCCCGGCCTGCAGACCGACTGCGcGGCGCTGCTCAGCCGCTTCCAGGAGACGGACAGTGTACGCTTCGAGGACTTCACGGAGCTCTGGAGAAACATGAAGTTCGGGACTATCTTCTG|CTTGCCAATTCTGTAACTCCTTGGGATATCTTGCTGAGCTTAATTGCAG	out-of-frame	MGTPPGLQTDCaALLSRFQETDSVRFEDFTELWRNMKFGTIFc|lpil*	.
TALL_VC065	AUH	CGGBP1	-/-	-/-	9:91361628	3:88058223	splice-site	splice-site	translocation	upstream	downstream	0	1	0	108	472	low	.	.	.	CGGCACCTGGAGGAGGAGAACCGAG|TAAAGGCATGACTTCCTGGCACCACAGGGAAAATCGGGTGCAAGCCCAGAAACTATTTCCCCACCACCACTTGTTGAAAAACTGATTTGAAGGCATCTCCGGGGTTGAACAAACGGAAAGTGCCAG	out-of-frame	RHLEEENR|vka*	.
TALL_VC065	MCM3AP	DHX15	-/-	-/-	21:46273388	4:24529770	splice-site	splice-site	translocation	upstream	downstream	0	1	0	108	1420	low	.	.	.	GCGGGATTGGTATGACTTCGTGTGGAACCGCACGCGTGGCATACGGAAG|GTGGCACATTTAGAACGAACAGGGCATTACTTAACTGTGAAAGATAACCAGGTGGTTCAGTTGCATCCCTCTACTGTTCTTGACCACAAACCTGAATGGGTGCTTTATAATGAGTTTGTTCTAACAAC	in-frame	RDWYDFVWNRTRGIRK|VAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLT	.
TALL_VC065	SNHG1	RCSD1	-/-	+/+	11:62855424	1:167704664	splice-site	splice-site	translocation	upstream	upstream	0	1	0	1403	253	low	.	.	.	GCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCA|GATGACACTCCTGTCCAGGACACTAAAATGTGAAGAACAGCTCATTGTGCCCCAGTGATGAAGTTGCTGGACACATCTCTTTGCAGGTAGCAGCAACAGTTGTAGCAGCAGCAGACGAAGCCATTGCAGAGGCAGAATATGC	.	.	.
TALL_VC067	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	4	10	0	29	64	high	.	.	mismatches(2)	GCCGAAATTGCCTGGGCGCTG___...GTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGG...GTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCC	.	.	.
TALL_VC067	CEP85	CATSPER4	+/+	+/+	1:26239838	1:26197686	splice-site	splice-site	duplication	downstream	upstream	2	7	2	121	100	high	.	.	duplicates(1),low_entropy(1),mismatches(1)	GTTAGAGGAGCTGAGGGAGGGAACCACCGCTCACCGCAGACGTGGTGGCTGCAGTCAGTCTTCCCGAGTGAGGGATTTCGCCGCCCGCTTTCAGGCCCGT___TTGGCTTAAATAACTGTGATTGATGGCCATGCAGGAGAAATATCCAACTGAGGGGATCTCTCACGTCACTTCACCGA|GACGGCTGGAACATCCTCAACTTCATTATCGTCTTTATCTTGCTCTTGCGGTTCTTCATTAATGAAATCAATATTCCCTCCATCAACTACACTCTCAG___GGCGCTTCGTCTGGTGCATGTGTGCATGGCGGTGGAGCCCCTCGCCCGGATCATCCGCGTCATCCTGCAGTCGGTGCCTGACATGGCCAATATCATGGTCCTCATCCTCTTCTTCATGCTG___GTTTTTTCCGTGTTTGGAGTAACACTCTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACATACAGGTTGCGCTGTAC	out-of-frame	MAMQEKYPTEGISHVTSP|rrlehpqlhyrlylalavlh*	.
TALL_VC067	CEP85	CATSPER4	+/+	+/+	1:26239838	1:26198286	splice-site	splice-site	duplication	downstream	upstream	0	1	0	121	143	low	.	.	.	GAAATATCCAACTGAGGGGATCTCTCACGTCACTTCACCGA|GTTTTTTCCGTGTTTGGAGTAACACTCTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCCTCTTCATCTGCATCACCCAGGACGGCTGGGTGGAC	out-of-frame	KYPTEGISHVTSP|sffrvwsntlwciraqafpehtgcavhplhlhhpgrlgg	.
TALL_VC067	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	9	25	0	84	52	medium	.	.	duplicates(2),low_entropy(1),mismatches(5)	CCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGG	.	.	.
TALL_VC067	C6orf183	CCDC162P	+/+	+/+	6:109270176	6:109285976	exon	splice-site	deletion/read-through	downstream	upstream	3	6	2	65	44	medium	.	.	duplicates(2),mismappers(3),mismatches(2)	GTTTGATTCATATATTTACATGTTGAATAAGTGGTGATTTCAACCCTCAACTCACTTCTTTATGCAAGACATTCCTAATATTTTTCATATTTTCTTCCTTTAGCTTTTGCTGCATTCAGGAGTGGAAAATATGCAGGTGACTCTTGCATGCCAAGCTGCTCAGAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGCACCCCTCAAGGGAGCTGTCCTGCTAATGTCAAG|GATGAAATTGGAAAAGTCAAGAGAGATGTTATGGTTGAATATTGTCAGAA___GTTTAACCACCGCATGTCTCACTATGCTCTTCGGGGTCAGATCATGGCATACTGCAATAGCCTGAGAGATCTTCTGGAAGATTTTCCTACCATCAGGGACACCTTTTTCATGGTAGGGCAACCACAAGAGAAGAAGGGGTTGAGAGACTCCAAG	.	.	.
TALL_VC067	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	6	0	183	195	medium	.	.	.	TCTTCTTCCAGGCTCCGTTGGTGGTCGtCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC067	YPEL5	CAPN13	+/+	-/+	2:30158637	2:30776939	CDS	intron	deletion/5'-5'	downstream	upstream	4	0	1	707	13	medium	.	.	duplicates(24),low_entropy(18),mismappers(15),mismatches(11)	CGACAAGCCGCTGGCAGCCGCGGATCTCACCGCCGCTCAGG___...AAGAACTTTGAATTAG___GTTTTTAGAACTTCAGCCATAAAAATGGGCAGAATTTTCCTTGATCATATCGGTGGTACCCGTCTGTTTTCTTGTGCAAACTGTGATACGATCCTGACCAACCGCTCAGAACTCATCTCCACTCGTTTCACAGGCGCCACTGGCAGAGCATTTCTTTTTAACAAG___GTAGTTAACCTGCAGTACA|GCGAAGTTCAAG	out-of-frame	MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQY|sevq	.
TALL_VC067	RP11-680G10.1(40371),AC092377.1(41603)	GSE1	./+	+/+	16:85399820	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	0	6	64	medium	.	.	mismatches(1)	GTACCAAGCTTCGTGTCCTCAGCACATGTTTATTGAGCACCTACTGTGTGCCAATCACTGCCGTAGGCGTGGGGGATGCCGCgGACAGTGAAACGGGCAAGGATACCTACACTTGGCGGGGTGCACATTCTGCTGAGTTtGGGGGAAGAATGGATTAGGAATCTGTGCTTCGCTCCTAGAAGAGCCCCTGGaAGGTG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCC	.	.	.
TALL_VC067	EEF1A1P6	DNAH11	-/-	+/-	7:22510573	7:21782741	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	8	754	1	low	.	.	low_entropy(2),mismappers(1),mismatches(8)	GATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGT...|...AGGGGCTTCACCATGTTGGCCAGGCTGGTCTTG	.	.	.
TALL_VC067	MTAP	CDKN2B-AS1	+/+	+/+	9:21856223	9:22032674	splice-site	splice-site	deletion/read-through	downstream	upstream	4	2	1	66	36	low	.	.	duplicates(2),mismatches(2)	GGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___ATCGTTCGTCCTGTCATTTATCTCATTTTAAGATAAAGGGACGACAAAACTGCAGTCACTTTTGAAGTAAGGAAAACATTTAGGGGTGACTTTCTGAGCACATTTAGG|GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACA?AATTAAAAACACTGGGCATGTGGAAATAATATTCATGCTTTAAATTGTCTTTTCTCTTCACTACACCAGGGGTCCCC	out-of-frame	GICYASIAMATDYDCWKEHEEAivrpviylilr*rddktavtfevrktfrgdflstfr|aiystdlssiplavldvkmifpagipst?lktlgmwk*	.
TALL_VC067	KLRF1	CD69	+/-	-/-	12:9838064	12:9756419	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	4	2	1	100	708	low	.	.	low_entropy(4)	CTTTTAGCAAAATGGGGCCAATTTTAATAGTTGAGCAGGGAATTGCCTCTTTAATTTACCCTTCCTCAAAGCTATTCACCCCCCCAGAAAAATCACTTTAACTTATGAGTGCTTCCTGGAATA...AAGAGGCCTGCTTGCATGCTCACCATATCCCTATGTGGGAGCAGGATCCTGCCGTTCATGGATACAGAGGGAGGTGCAGAAGGAAAGATTGCCTCCAGAAGCTAAGGAGTAGACTGGCACTGTTGTCATGTAACCCTA|ATGATGCCACCAGTCCCCATTTCTCAACACGTCATGAAGGGTCCTTCCAAGTTCCTGTCCTGTGTGCTGTAATGAATGTGGTCTTCATCACCATTTTAATCATAGCTCTCATTGCCTTATCAG___TGGGCCAATACAATTGTCCAGGCCAATACACATTCTCAATGCC...GCTGTCATTGATTCTGAAAAGGACATG___AACTTTCTAAAACGATACGCAGGTAGAGAGGAACACTGGGTTGGACTGAAAAAGGAACCTGGTCACCCATGGAAGTGGTCAAATGGCAAAGAATTTAAC	.	.	.
TALL_VC067	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511752	7:23314375	exon	intron	deletion	downstream	upstream	0	0	6	230	5	low	.	.	low_entropy(1),mismatches(4)	.	.	.	.
TALL_VC067	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	0	121	208	low	.	.	low_entropy(1),mismatches(1)	GGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAAC	out-of-frame	GELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC067	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	131	208	low	.	.	mismatches(1)	GAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGC	out-of-frame	NIQL|asrnrfs*	.
TALL_VC067	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	185	208	low	.	.	mismatches(1)	TGATGGAGcACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTT...GAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATC	in-frame	DGaLVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVI	.
TALL_VC067	GFRA4	ATRN	-/-	+/-	20:3663354	20:3649255	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	3	1	0	37	30	low	.	.	duplicates(2)	CAGAGGCACTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|GCTCTCTTGTGACGCGCAACACTGCCAGATGACAACCAATTCCTTCTTGGAAACAGGCTCCGAGCCCAGCGC	out-of-frame	MVRCLGPALLLLLLL|gslvtrntar*	.
TALL_VC067	ANAPC10	RP13-539F13.3	-/-	+/-	4:145064572	4:144870953	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	3	1	0	101	5	low	.	.	duplicates(1)	GCCAGCTGCTGGAGGTGCCGAGAATCTGAGTTTCGGCAAGCAGCCAG___AATATTTTAAAAATGACTACACCAAACAAGACACCTCCTGGTGCTGACCCCAAGaAGTTGGAAAGGACTGGAACAGTACGGGAAATTGGGTCACAAGCTGTTTGGTCACTCTCATCTTGCAAACCAG___GATTTGGAGTGGATCAGTTACGAGATGACAATCTAGAAACTTATTGGCAATCAGATGGTTCCCAGCCTCATTTAGTGAACATCCAATTCAG___AAGAAAAACA...ACAAATCTGATGAAAGCTATACTCCAAGCAAGATCTCAGTCAGAGTAGGAAATAATTTTCACAACCTTCAAGAAATTCGG|TTTTGTAGAGATGGGGTTTTGCCATGTTGCCTGGGCTGATTGTGAACTTCTAGGCTCAAGCCATCTGCCTGCCTTGGCCTCCTAGGATTACAGG...GAGACCTTATGAGAAATGCAGACTACCGGGCTCCACTTCATTCTTAGTGAGTCACAAGACTCACTAAGATCTTAACAAGATCCTCAGATAACTGGTAAGAAAGAGCATTAAAACTTGAGAATG	out-of-frame	KSDESYTPSKISVRVGNNFHNLQEIR|fcrdgvlpcclg*	.
TALL_VC067	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	0	0	74	178	low	.	.	mismatches(1)	GGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGaCTCgAGACCAGaGgGTGGAGCGCCTGCAGAAGATCCAGA	.	.	.
TALL_VC067	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	3	0	29	9	low	.	.	low_entropy(2),mismatches(1)	GCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___TATGACAGACTTAACCTGATCAAA___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCA	.	.	.
TALL_VC067	EEF1A1P12	UXS1	-/-	-/-	2:106697704	2:106148149	exon	intron	deletion	upstream	downstream	0	0	3	13	4	low	.	.	.	CTGGTGTTCTCAAACCcGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCgTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGG...|...GTAGAGAGCGT	.	.	.
TALL_VC067	MTRNR2L8	SBF2	-/-	-/-	11:10508833	11:10262035	5'UTR	intron	deletion/read-through	upstream	downstream	0	0	3	17	0	low	.	.	mismatches(8)	GGACTAAcCCCTaTACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAgGAGAgCCAAAGCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTtaTAGGTAGAGGCGACAAACCTACCGAGcCTGGTGATAGCTGGTTGTCCA...|...CTTTGTAATTTAAAC	.	.	.
TALL_VC067	C5orf56	RAD50	+/+	+/+	5:132449689	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	222	65	low	.	.	mismatches(1)	AGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCA	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|dhh*	.
TALL_VC067	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	0	0	13	5	low	.	.	duplicates(1),mismappers(1),mismatches(1)	CTTGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAG	out-of-frame	LDTPERGFSLRKDGPLDMRMDGGRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL_VC067	CTB-113I20.1(11517),TCF7(21154)	VDAC1	./-	-/-	5:134093557	5:133993015	intergenic	splice-site	deletion/read-through	upstream	downstream	1	1	0	70	200	low	.	.	duplicates(1),low_entropy(4),mismappers(1)	CTTCTCTCTGCCGGCTCACGCTCTTGACACCAGTGCACATCTGAAGTCACATCTGGGAAGCCTGGTCAGACCCTGTGGAAAGACATCACCAGCCAGCCAGGAAATTACAG|AAGATGGCTGTGCCACCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAGGGCTATG___GATTTGGCTTAATAAAGCTTGATTTGAAAACAAAATCTGAGAATGGATTG___GAATTTACAAGCTCAGGCTCAGCCAACACTGAGACCACCAAAG	.	.	.
TALL_VC067	DNAJB6	PTPRN2	+/+	-/+	7:157415780	7:157710232	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	8	1	low	.	.	mismappers(2),mismatches(11)	TTCCAGGACTGAGGTGCAGCCGTGCCCAGGGTGGGCTTCTAGCTCTGCCGCTGGGCAGAACTGGGGTAGTCCCAGGGTGGGCTTTTAGCTCTGCCGCTGGGCGGAACTCGG...|...CTGGAACGTCC	.	.	.
TALL_VC067	ACTR3	DPP10	+/+	+/+	2:113960027	2:114621171	3'UTR	intron	deletion	downstream	upstream	0	0	2	33	0	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	TATTTGAACTCTCTGGACCTTGATTCAATTTATATATAAGGTAAAGGCATTATACTGGATTATCCTGCAATTTCTTTGAGTTGTTAGAATATAATGTAGC...|...ACAGCTGGATG	.	.	.
TALL_VC067	KMT2A	MLLT1	+/+	-/-	11:118484314	19:6230713	splice-site	splice-site	translocation	downstream	downstream	1	0	0	120	71	low	.	.	.	CCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG___GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAgCATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAA[a]TTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG|GAGGAGCCGAGGAAGGTCTGCTTCACCTACGACCTGTTCCTGAACCTGGAAGGCAACC	out-of-frame	PSIPVKQKPKEKEKPPPVNKQENAGTLsILSTLSNGNSSKQKnssrwspqdqsgl*|ggaeegllhlrpvpepgrq	.
TALL_VC067	KMT2A	MLLT1	+/+	-/-	11:118484975	19:6270759	splice-site	splice-site	translocation	downstream	downstream	0	1	0	61	29	low	.	.	.	GGAATCTTGACTTCTGTTCCTATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGGGCATGTAGAG|TGCACCGTCCAGGTGAGGTTAGAGCTGGGGCATCGCGCCCAACTGCGCAAGAAGCCCACCACGGAGGGGTTCACTCACGACTGGATGGTGTTTGTCCGCGGCCCCGAGCAATGTGACATCCAGCACTTCGTGGAGAAGGTGGTCTTCTGGCTGCACGACAGCTTCCCC	in-frame	GILTSVPITPRVVCFLCASSGHVE|CTVQVRLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFWLHDSF	.
TALL_VC067	STRBP	DENND1A	-/-	-/-	9:123132845	9:123457897	splice-site	splice-site	duplication	upstream	downstream	0	1	0	185	21	low	.	.	.	GAGGAACTCTAACAAGGGGAGCTTTTGTTGGGGCGACAGCTGCTCCTGGCTACAaAGCTCCAG|GAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACTACCGCTCCGGAGCCATGAGG...GCTGGAGATGCCTTTGTTTGTAAAGCCAGGCTCTTCTCATGCCAGATGGAGACTAGAAGGGTGGGATTGTCCAAAGCCATCACTTGGTGGGGGCTGAAAAAGGCATGAGAGGCTTCCTCCTC	out-of-frame	GTLTRGAFVGATAAPGYkAP|ggadhfl*	.
TALL_VC067	DYRK1A	SIRT5	+/+	+/+	21:37367628	6:13579451	splice-site	splice-site	translocation	downstream	upstream	0	1	0	65	40	low	.	.	.	CCGGAGGAAGCGGCGCGAGCGCCCCGCCATCGTCCCG|TAAATGGAgATGTTTTCTAACATATAAAAACCTACAGAAGAAGAAAATAATTTTCTGGATCAAATTAGAAGTCTGTATTATATTGATGTCTCCAGATTCAAATATATTAGAAAGCAG	.	.	.
TALL_VC067	ENSA	CCNC	-/-	-/-	1:150625642	6:99546474	splice-site	splice-site	translocation	upstream	downstream	1	0	0	661	246	low	.	.	.	TGGCCAAAGCCAAGATGAAGAATAAGCAGCTGCCAAGTGCAGGACCAGACAAGAACCTGGTGACTGGTGATCACATCCCCACCCCACAGGATCTGCCCCAGAGAAAGTCCTCGCTCGTCACCAGCAAGCTTGCGGG|CTTGCCTACATGTAGCCTGTGTTGTACAGCAGAAAGATGCCAGGCAATGGTTTGC	out-of-frame	AKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAg|lptcslcctaercqamv	.
TALL_VC068	LINC01366	TRDJ3	+/-	+/+	5:170331931	14:22459100	intron	splice-site	translocation/3'-3'	upstream	upstream	19	22	4	90	157	high	.	.	duplicates(2)	ATGAAAGGCGGCCTGCAGGTGGACCACAAAAGTGGGAAGCATCATTCCCACCCAAGAAAGGAAAGAGAACAGAAGACGCCTGATCAGAGCCTTCCTGAGGaCTCATCTCCCCTATCTCCGGGGAGCTGAGAACCACCCCCAAGGATTTGGTGGGTCCCCTCCCCAACAGGCCCCTCCACCTCTGGTGAAAGAGCTCTGCCCACTTCTCTGCTTAGTCTGAGCTGA|CCTGGGACACCCGACAGATGTTTTTCGGAACTGGCATCAAACTCTTCGTGGAGCCCC___GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAAC...TCTACAG___ATCACGTAAAACCAAAGGAAACTGAAAACACAAAGCAACCTTCAAAGAGCTGCCATAAACCCAAAG___CCATAGTTCATACCGAGAAGGTGAACATGATGTCCCTCACAGTGCTTGGGC...GAAGGAACACAGCTCACAGTGAATCCTG___ATATCCAGAACCCTGACCCTGCCGTGTACCAGCTGAGAGACTCTAAATCCAGTGACAAGTCTGTCTGCCTATTCACCGATTTTGATTCTCAAACAAAT	.	.	.
TALL_VC068	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	12	17	2	78	142	high	.	.	duplicates(4),low_entropy(1),mismappers(3),mismatches(4)	CCAAGGTGGCCtAAATTGCCTGGGCGCTGGTCGGcGAGAGAGCCTTTTGATCATCTTGCGGGGC?GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGAC	.	.	.
TALL_VC068	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	20	0	49	51	high	.	.	duplicates(1),low_entropy(6),mismatches(1)	TTTGTCTAGTTGAAGTCTAAGTGACCTCCCCCAGGGTTGAGAAAGAAGCTGAAGTTAACGGTTGATATCCTATGTCTTTCCTCAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAATGT	.	.	.
TALL_VC068	SFXN1	STON2	+/+	-/-	5:175492267	14:81324187	splice-site	intron	translocation	downstream	downstream	8	6	3	152	18	high	.	.	.	GGCGGAGGCTGCACTGAGCGGGACCTGCGAGCAGCGCGGGCGGCAGCCCGGGGGAAGCG___TCCGGGACCATGTCTGGAGAACTACCACCAAACATTAACATCAAGGAACCTCGATGGGATCAAAGCACTTTCATTGGACGAGCCAATCATTTCTTCACTGTAACTGACCCCAGGAACATTCTGTTAACCAACGAACAACTCGAGAGTGCGAGAAAAATAGTACATGATTACAG|ACAAGAGGACGGAGTGGCAGACAGGCAGGCAGACGGCAGTGAGTCCTGTTCAAGCATGCTCGGAGCATACCTCCACCCGCACCCACCGCCTGGACCCCTCGCCACCCTCACCCCAGCCCAAGAGGAGCCAGAACCCCGGCGAGGGTCCGGAGGGGGCCTCTGCTCCCAATG___ACAATTCCTCCTCGCTTCAAGAAGATGAAGAAGTAGAGATGGAGGCCATCAGCTGGCAGGCCAGCAGTCCAGCCATGAATGGGCACCCTGCCCCTCCAGTGACCTCTGCTCGTTTTCCCAGCTGGGTCACCTTTGATG	out-of-frame	MSGELPPNINIKEPRWDQSTFIGRANHFFTVTDPRNILLTNEQLESARKIVHDYr|qedgvadrqadgsescssmlgaylhphpppgplatltpaqeepeprrgsggglcsq*	.
TALL_VC068	SFXN1	STON2	+/+	-/-	5:175492267	14:81278739	splice-site	splice-site	translocation	downstream	downstream	1	0	2	152	38	high	.	.	.	GCGGAGGCTGCACTGAGCGGGACCTGCGAGCAGCGCGGGCGGCAGCCCGGGGGAAGCG___TCCGGGACCATGTCTGGAGAACTACCACCAAACATTAACATCAAGGAACCTCGATGGGATCAAAGCACTTTCATTGGACGAGCCAATCATTTCTTCACTGTAACTGACCCCAGGAACATTCTGTTAACCAACGAACAACTCGAGAGTGCGAGAAAAATAGTACATGATTACAG|ACAATTCCTCCTCGCTTCAAGAAGATGAAGAAGTAGAGATGGAGGCCATCAGCTGGCAGGCCAGCAGTCCAGCCATGAATGGGCACCCTGCCCCTCCAGTGACCTCTGCTCGTTTTCCCAGCTGGGTCACCTTTGATGACAATGAAG	out-of-frame	MSGELPPNINIKEPRWDQSTFIGRANHFFTVTDPRNILLTNEQLESARKIVHDYr|qfllasrr*	.
TALL_VC068	PCNXL4	KLHDC1	+/+	+/+	14:60092419	14:49734589	splice-site	splice-site	duplication	downstream	upstream	3	8	1	422	92	high	.	.	duplicates(1)	TCCGGGTGGCGGCCGCCGGAGTAGACGTTAGCCATGGAAACCGAGAGCTGGCCCGGGCGGGGCCGCGGTGAGCTCGTTATTCGGCCGCCGCAGCTTTTCTGCCTCCGCATTCGGGCACTAACCAACCTCCCGGCGGGAtCGCCCAGCCCGgGTTTACCTGCAAAAATGCGGTCCCTGGGATGCCTTCGCGTCTTCTCTTCCCTCGGGTGACTTGAG|GTGATGGTTGGATTCATAATGTCACAACAAATTGTTGGAAACAACTTACACATTTACCTAAAACAAGACCTAG___GTTATGGCACACAGCCTGTTTGGGAAAAGAAAATGAAATAATGGTATTTGGTGGGAGCAAAGATGACTTACTTGCCTTGGATACA___GGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCTTATTCACTACTCAG___GTCATGCCTTGACTGCATTGGTAAAAATTC	.	.	.
TALL_VC068	PCNXL4	KLHDC1	+/+	+/+	14:60092419	14:49732704	splice-site	splice-site	duplication	downstream	upstream	0	2	2	422	37	medium	.	.	.	GGCAGCGAGGCCAGCCAGGCGCCGACGAGGTCCCCGAACGCGCACGCGCTCCGTTCAGCTCCGGGTGGCGGCCGCCGGAGTAGACGTTAGCCATGGAAACCGcGAGCTGGCCCGGGCGGGGCCGC...CGCCGCAGCTTTTCTGCCTCCGCATTCGGGCACTAACCAACCTCCCGGCGGGAtCGCCCAGCCCGgGTTTACCTGCAAAAATGCGGTCCCTGGGATGCCTTCGCGTCTTCTCTTCCCTCGGGTGACTTGAG|GATTACTATTAATGGAGAAAGCCCAAAACATCGGTCATGGCATACTTTAACACCTATAGCTGATGATAAACTTTTCCTATGTGGTGGACTAAGTGCAGATAATATCCCATTAA___GTGATGGTTGGATTCATAATGTCACAACAAATTGTTGGAAACAACTTACACATTTACCTAAAACAAGACCTAG___G	.	.	.
TALL_VC068	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	6	4	0	40	27	high	.	.	mismappers(1),mismatches(1)	GTCTGCCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAG	.	.	.
TALL_VC068	LINC01550(70523),RP11-61O1.1(19593)	RANBP17	./-	+/+	14:98048647	5:171293883	intergenic	splice-site	translocation	upstream	upstream	2	3	1	110	55	high	.	.	.	GGTGTGAGCTTCTACTGCTACATGAGCCTGTTCTTGCAAGACATGTAGGGGAGAAGATGAGGAGAATTGCAG___ATACCTAGCACGGGGCCCTGGAGAATCTCTGAAAAGAGAACAACCAACAAGCACTGTAAGGAGACAAGGTTCTTGCATCAACAG|ATGATGTCTGTCCTCATGAACACCATTGTCTTTGAAGACTGTCGGAACCAGTGGTCAGTATCCAGGCCTCTCCTGGGGCTCATCCTGCTCAATGAGAAG___TATTTCAGTGAACTGAGAGCAAGTTTGATAAACAGCCA	.	.	.
TALL_VC068	DDHD1	JKAMP	-/-	+/+	14:53152261	14:59487674	splice-site	splice-site	inversion	upstream	upstream	4	1	0	79	269	high	.	.	.	GGTTCTACAAGGAGGACAAGAAGACCTGGAAGCCCTTCATCGGCTACGACTCGCTCCGCATCGAGCTCGCCTTCCGGACCCTGCTGCAGACCACGGGTGCCCGGCCCCAGGGCGGGGACCGGGACG...CGATGAGGACCGCGCCTGCGGCTTCTGCCAGAGTACGACGGGGCACGAGCCGGAGATGGTGGAGCTTGTGAACATCGAGCCTGTGTGCGTGCGGGGCGGCCTCTACGAGGTGGATGTGACCCAAGGAGAGTGCTACCCGGTGTACTGGAACC|GTATGCCCAAGAGGACAGAGAACGAATGCACAGAAATATTGTCAGCCTTGCACAGAATCTCCTGAACTTTATGATTGGCTCTATCTTGGATTTATGGC...CACTGCATTATTTGAATGCAGCATGGCAGCTATTATCACCTTACTTGTGAGTGATCCAGTTGGTGTTCTTTATATTCGTTCATGTCGAGTATTGATGCTTTCTGACTGGTACACGATGCTTTACA	out-of-frame	DEDRACGFCQSTTGHEPEMVELVNIEPVCVRGGLYEVDVTQGECYPVYWN|rmpkrtenecteilsalhris*	.
TALL_VC068	CREBRF	AK7	+/+	+/+	5:173123202	14:96398075	splice-site	splice-site	translocation	downstream	upstream	2	2	0	178	14	high	.	.	duplicates(1)	TTCCAG___AGCTTGTCGGTTAAAGAAGAAAGCCCAGTATGAAGCTAATAAAGTGAAATTATGGGGCCTCAACACAGAATATG___ATAATTTATTGTTTGTAATCAACTCCATCAAGCAAGAGATTGTAAACCGGGTACAGAATCCAAGAGATGAGAGAGGACCCAACATGGGGCAGAAGCTTGAAATCCTCATTAAAGATACTCTCG|TTTCTATCTAACTGTGTAGTTGGGGCTTCGCTTGAAGAAATTACAGAGGAAGAGGAAGAGGAAGATGAAAATAAGTCAGCT...TCCTCAACCAAAGTGAAGGAAGGCACATTCCAGATTGTGGGCACGCTGTCCAAGCCTGACAGCCCGCGGCCTGACTTTGCGGTGGAGACGTACTCT___GCCATCTCTCGAGAAGACCTTCTCATGCGCC	out-of-frame	SRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQNPRDERGPNMGQKLEILIKDTL|vsi*	.
TALL_VC068	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	10	17	0	65	44	medium	.	.	duplicates(2),mismatches(1)	ACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGG...AGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGAT	.	.	.
TALL_VC068	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	12	6	1	294	754	medium	.	.	duplicates(1)	GCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGC...TCCTTACAACAGGTTATTTTAAAATGTTGAGATTTAACTTCAAAGGATGTCTCATTAGTCCTTATTTAATAGTGTAAAATGTCTTTAACTTAAGTGATTAGTACAGTGTTTCTATTGACATATAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC068	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	1	0	450	47	medium	.	.	low_entropy(3),mismappers(1)	GTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCAC	.	.	.
TALL_VC068	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	4	1	0	11	142	medium	.	.	.	CCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCG	.	.	.
TALL_VC068	MRPS18A	PDC	-/-	-/+	6:43687668	1:186459293	splice-site	intron	translocation/5'-5'	upstream	upstream	2	0	0	87	6	medium	.	.	.	AGGGTAGGTTTTTGAAGATGGCGGCCCTCAAGGCTCTGGTGTCCGGCTGTGGGCGGCTTCTCCGTGGGCTACTAGCGGGCCCGGCAGCGACCAGCTGGTCTCGGCTTCCAGCTCGCGGGTTCAGGGAAG|CCTGCCGAGTGCCTGCGATTGCAGGCACGCGCCGCC	out-of-frame	MAALKALVSGCGRLLRGLLAGPAATSWSRLPARGFRE|acrvpaiagtrr	.
TALL_VC068	MRPS18A	RP11-295K2.3	-/-	+/+	6:43687668	1:186459293	splice-site	intron	translocation	upstream	upstream	2	0	0	87	6	medium	.	.	.	AGGGTAGGTTTTTGAAGATGGCGGCCCTCAAGGCTCTGGTGTCCGGCTGTGGGCGGCTTCTCCGTGGGCTACTAGCGGGCCCGGCAGCGACCAGCTGGTCTCGGCTTCCAGCTCGCGGGTTCAGGGAAG|CCTGCCGAGTGCCTGCGATTGCAGGCACGCGCCGCC	out-of-frame	MAALKALVSGCGRLLRGLLAGPAATSWSRLPARGFRE|acrvpaiagtrr	.
TALL_VC068	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510576	7:22356892	3'UTR	CDS	deletion/read-through	upstream	downstream	0	0	18	4354	54	low	.	.	low_entropy(14),mismappers(7),mismatches(89)	ATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATC...|...CTGCCCGCG...GGTGGCGGAA	.	.	.
TALL_VC068	EEF1A1P6	DNAH11	-/-	+/-	7:22510813	7:21889520	exon	intron	deletion/5'-5'	upstream	downstream	0	0	17	9411	6	low	.	.	duplicates(4),low_entropy(17),mismappers(4),mismatches(90)	GTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCT...|...ACATTGCTGAA	.	.	.
TALL_VC068	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511847	7:23314803	exon	intron	deletion	downstream	upstream	0	0	11	1342	4	low	.	.	duplicates(4),low_entropy(6),mismappers(4),mismatches(49)	.	.	.	.
TALL_VC068	EEF1A1P6	CDCA7L(146481),RAPGEF5(25673)	-/-	./-	7:22510563	7:22092565	3'UTR	intergenic	deletion	upstream	downstream	0	0	11	4354	1	low	.	.	duplicates(1),low_entropy(6),mismappers(2),mismatches(33)	G___GAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAA...|...TACACGTTGAC	.	.	.
TALL_VC068	EEF1A1P6	FAM126A	-/.	-/.	7:22511914	7:22926084	exon	intron	deletion	downstream	upstream	0	0	10	285	1	low	.	.	duplicates(1),low_entropy(2),mismatches(22)	.	.	.	.
TALL_VC068	EEF1A1P11	DPYD	+/+	-/+	1:96448184	1:97277456	exon	intron	deletion/5'-5'	downstream	upstream	0	0	9	84	1	low	.	.	mismatches(9)	AAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGtTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATC...|...TTGATCCTCC	.	.	.
TALL_VC068	ARHGEF10	KBTBD11	+/+	+/+	8:1952827	8:2000285	splice-site	splice-site	deletion/read-through	downstream	upstream	5	2	1	274	44	low	.	.	low_entropy(2),mismappers(1)	CCCGAAGCCACTCgTGTCTTTCCGCCCAGGGCACCAGCGGCTGTCGGTGACGAGCCTGCTCGTCTGCCACGGATTGCTGATGGTCGGCACCAGCCTGGGAGTCCTCGTGGCCCTGCCGGTCCCACGTCTGCAAGGGATTCCCAAAGTGACCG|GAACAAGAGTGTGGTGAGAGGACGCGGAAACACCTGATATCCCAGCAAAGGAAGCTGCAGAGGAAGGGTCCTGCCCCGTGAGCGAGGACAGCCTCCAGGAGCACAGCGGCTTCTCCTAACATCCCCCTGGCAGTGAATTACGGATGACCCCGTATATGAGGAGGTGTGGATGCCGACACACGGGGAGAGCTCCTGAGACCAGCACACAGGACCAGTGTCCTCC	out-of-frame	pkplvsfrpGHQRLSVTSLLVCHGLLMVGTSLGVLVALPVPRLQGIPKVT|gtrvw*	.
TALL_VC068	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	3	2	2	46	90	low	.	.	duplicates(1),mismappers(1)	GGCGAGTCCGGAAACCCTCGGCCAATCAGAGAGGGCTGGGGCGGCGCCTGCTAGAAGGCTTAGCACTGCAGGGCTCTGGGCGGGAAGGCTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGCAAGAGAGAAAGTGAATACGCTGATATAAGAAGCAAG___AAACCTTCCTTCCTTCC...CCACGGAAACAGCTCATGCCCTAGTGTACAGTGGTGCAGCCAATGAGTGACCTGAAGTCTATGAGCAACACTCATTGTCCCAATGTGGGACGAGTGACCGAAGCTGAACCCACAACAGCCTTCCTG	.	.	.
TALL_VC068	LINC01225	TINAGL1	+/+	+/+	1:31540885	1:31583149	exon	splice-site	deletion/read-through	downstream	upstream	2	4	1	103	46	low	.	.	mismappers(3)	GTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG___GCCTCAGCAGTTGAGCTGGTTCACCTTGGAATCTGACTCTGACAAGCAAAAGGAAGCAGAGTCTGATCATCTTTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___CTGGCAGGCTGGGAACCACAGCGCCTTCTGGGGCATGACCCTGGATGAGGGCATTCGCTACCGCCTGGGCACCATCCGCCCATCTTCCTCGGTCATGAACATGCATGAAATTTAT___ACAGTGC	.	.	.
TALL_VC068	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31583149	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	2	224	46	low	.	.	duplicates(1),mismappers(1)	CTTACTTTCCTCATGAAAGAGTATTTCTTCTAATCTATTTTGATTG___ATACTAACATGTGAACCAGCTGATACACATCTGAAGAGCCAG___TTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___C	.	.	.
TALL_VC068	TRIO	EEF1A1P13	+/+	-/+	5:14495099	5:14652739	intron	exon	deletion/read-through/5'-5'	downstream	upstream	0	0	7	13	7419	low	.	.	duplicates(1),low_entropy(4),mismappers(2),mismatches(27)	TTGGAAGAAGTTG...|...CCAACCAGAAATTGGCACAAATGCTACTGTGTCGGGGTTGTAGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTCTGGCTGTAGGGTGGCTCAGTGGAATCCATTTTGTTAACACCgACAATTAGTTGTTTCACACCCAGTGTGTAAGCCAGAAGGGCATGCTCTCGGGTCTGCCCATTCTTgGAGATACCAGCTTCAAATTCACCAACACCAGCAGCAACAATCaGGACAGCACAGTCAGCCTGAGATGTCCC	.	.	.
TALL_VC068	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	6	0	99	33	low	.	.	duplicates(1),low_entropy(3)	CTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAG...CACgCCgCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAATGTAAGTATTCC	.	.	.
TALL_VC068	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	4	0	78	8	low	.	.	mismatches(1)	CCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTAC...ACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCA	out-of-frame	HSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC068	EEF1A1P12	RGPD3	-/-	-/-	2:106698047	2:106465892	exon	intron	deletion/read-through	upstream	downstream	0	0	5	17	0	low	.	.	mismatches(1)	AAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCcGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTG...|...CCGACGGCG	.	.	.
TALL_VC068	EEF1A1P11	DPYD-AS1	+/+	+/+	1:96448184	1:97277456	exon	intron	deletion	downstream	upstream	0	0	5	84	1	low	.	.	mismatches(2)	AAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGtTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATC...|...TTGATCCTCC	.	.	.
TALL_VC068	EEF1A1P19	ZNF131	-/-	+/-	5:43495419	5:43187534	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	5	61	1	low	.	.	low_entropy(1),mismatches(11)	GATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCcGGTaTGGTGGTCACCTTTGCTCCAGTCAACgTTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAgCAGCTGgCTTCAcTGCTCAGGTgATTATCCT...|...GGCtGGGCGtGGTGGCTCATGCCTGTAATCCCAGCACTATGGGAG	.	.	.
TALL_VC068	EEF1A1P11	PTBP2	+/+	+/+	1:96448295	1:96731221	exon	intron	deletion/read-through	downstream	upstream	0	0	5	192	12	low	.	.	low_entropy(2),mismatches(10)	GGCCAAATAAGCgCcGGCTATGCcCCTGTATTGGATTGCCACACgGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGtTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTgCTGTTCgTGATATGAGACAGACAgTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCC...|...CAAATGAAATTTAT	.	.	.
TALL_VC068	PTPN2	Y_RNA(4637),RP11-973H7.1(9196)	-/-	./-	18:12929499	18:12765455	splice-site	intergenic	deletion/read-through	upstream	downstream	1	3	0	51	239	low	.	.	duplicates(1),mismatches(2)	GCACAGGTGCAGAGGGAAGGAACTGGGAGCACACAGCAAGAAAGTGGCTGTTCACAAGCTAGGACCTGACCCTGCTGGCACCTTGATCTCGGACTTCCAGCCTCCAAAACT|TTCTGGAGGCTGGATGTCCAAGATGAAGGCACTGCTAAACTCcGCATCTGGAGAGGGTGGTTTCCTGATTCgCaGACAAcGTCTCCTCCCTGTGTCCTCACATGGCCTCTACTCTGTGCGCACCTGGAGAGAGAGCGCCCC...CCCTCTTCTGATGAGGTCACCAGCCCTATCAGGTGAGGGCCCTGGCCTTAGGCTTTCATTTCACCTTAATCTCCTCTCTAGAGGCTCCGCCTCCGCACACTGGCACCTGGGGCCAGGGGGCCAAC	.	.	.
TALL_VC068	MYB	PDE7B	+/+	+/+	6:135216792	6:135894793	intron	intron	deletion	downstream	upstream	0	0	4	81	0	low	.	.	low_entropy(1),mismappers(1),mismatches(3)	GTTATGACTCTTCTTTATACACATTTTgAAACTCTGTTGTCTTGTATTTCTTTTCTAATCATCTTACGTCCTTTTGGAAACCAAGTGGGG...|...GGTCCCACTA	.	.	.
TALL_VC068	RP11-286B14.1	EEF1A1P11	+/.	+/.	1:95585535	1:96447818	intron	exon	deletion	downstream	upstream	0	0	4	0	15	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	.	.	.	.
TALL_VC068	EEF1A1P19	NIM1K	-/-	+/-	5:43495453	5:43278714	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	3659	0	low	.	.	low_entropy(1),mismatches(3)	TCTCAAACCcGGTaTGGTGGTCACCTTTGCTCCAGTCAACgTTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGG...|...CTTTTTCAGTGCC	.	.	.
TALL_VC068	PSMA3-AS1	SLC35F4	-/-	-/-	14:58265690	14:57841753	exon	intron	deletion	upstream	downstream	0	0	4	806	0	low	.	.	.	GGAAGGGAAAGAATGCTGATCTTTAAATTTTTGTCCTTAGTTAAGTTCTGTATTTAGTGAATTAATTGCATCCTAAAAAGTCAAACTTGAAAAGCACATTTTAAATGGCAAATCTATTTTTTACAT...|...GATCTACG	.	.	.
TALL_VC068	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	21	194	low	.	.	.	GGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCC	out-of-frame	MPQTCDGTGQMHLGr|sqrttsmcqtwarclrlmfhptcltcpalpttsctlptwapal	.
TALL_VC068	IL9R	WASH6P	+/+	+/+	X:156004565	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	31	194	low	.	.	duplicates(1)	GGGAAG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTCCCAGAGAACTACTTtTATGTGCCAGACCTGGGCCAGGTGCCTGAG	out-of-frame	EVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|vpenyfyvpdlgqvp	.
TALL_VC068	PLEKHA5	AEBP2	+/+	+/+	12:19344895	12:19407836	intron	intron	deletion/read-through	downstream	upstream	0	0	3	18	2	low	.	.	duplicates(1),low_entropy(3),mismappers(4),mismatches(8)	GGCCAGGCGTGGTTGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCgGGCaGcTaACcTGAG|GTTGGGAGTTCGAGACCAGC	.	.	.
TALL_VC068	GFRA4	ATRN	-/-	+/-	20:3663354	20:3631835	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	3	0	0	14	12	low	.	.	duplicates(1),low_entropy(1)	TAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|ATAAACATAAGGAGGCAGCAAATCCACAAGGAAGAGCATGAAGCCAACGGCAACAGCTTCTAAGTTGGTCAAGAGCCTGCCGCTGCTGCTGAGAGGCGAGGACCCTGGTGTCACTCAGAAACCTCTCTTGGGTCCACCCGTAATACAGTCTGTGC	out-of-frame	MVRCLGPALLLLLLL|dkhkeaanpqgra*	.
TALL_VC068	ZNF37A	RP11-508N22.13(9343),RP11-508N22.6(1934)	+/+	./+	10:38096632	10:38159636	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	54	3	low	.	.	.	GCAGCACAACTAGAGATGTACGGATGCCCCCATCTTGATCTTACAGAATCAGAGGTACAGCCGCGAGAAAGGTCT___AGTCAAGAACAGACAGAGTCGCTTGAGGACTCAGGAGGGTGTTTGCTGCGTTGACAACAGA___CTACACCCTCACAGTTTGCTCTGCTCTTCCAACACCAGTGGAAGATGATCACATCCCAG|GTTGTATCAACTGTTGGGGTGATCAGACCCAACACCAGGCCATGGGGTCTATGAAGTCTGGCGGCATCAAAGGAATGAGG	out-of-frame	MITSQ|vvstvgvirpntrpwgl*	.
TALL_VC068	C5orf56	RAD50	+/+	+/+	5:132419940	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	207	94	low	.	.	low_entropy(1)	GCAGCGGCCGCCAGCCTGGAtCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAtATTCGTCTGCAATTTCGTGATGTCAATGGAGAACTTATAGCTGTGCAAAGATCTATG___GCATGGTGAAAAGGTCAGTCTGAGCTCTAAGTGTGCAGAAATTGACCGAGAAATGATCAGTTCTCTTGGGGTTTCCAAGGCTG	in-frame	MDSLAAGELNASHQPW|TIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAhIRLQFRDVNGELIAVQRSMAW*	.
TALL_VC068	RP11-592N21.1	LRRC49	-/-	+/-	15:71341243	15:70950871	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	986	1	low	.	.	low_entropy(2),mismatches(1)	GCATATCCAAGTGAACAAAGCACCTAAGATGCgCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGT...|...GGAGAAAACCAAG	.	.	.
TALL_VC068	PLCB4	ACSL1	+/+	-/-	20:9421370	4:184812675	CDS	intron	translocation	downstream	downstream	0	0	3	39	2	low	.	.	.	CTTCTCTGAAACTCCTGTTGATGGTGTTATTGCAGCCACTTGCTCAGTGCAG___GTTATATCAGGTCAATTCTTATCAGATAAGAAAATTGGCACCTACGTAGAGGTGGATATGTATGGGTTGCCCAC...|...CGTCTTCTAAAGACAGTAGCCCTTAGAGTTGATGGCAGTCTTGGGCTGACATTCTACATAAGTGAAACAATTTGAGAAATATAAAACATGATCAAAATAAGAGCAAGAGAATATTTTTATGTCCCC	.	.	.
TALL_VC068	EEF1A1P12	AC006227.1	-/.	-/.	2:106698626	2:107284945	exon	intron	deletion	downstream	upstream	0	0	3	21	0	low	.	.	low_entropy(1),mismappers(1),mismatches(5)	.	.	.	.
TALL_VC068	ANKH	CCT6P2(10908),EEF1A1P13(15)	-/-	./-	5:14710398	5:14651926	3'UTR	intergenic	deletion/read-through	upstream	downstream	0	0	3	120	16737	low	.	.	low_entropy(1),mismappers(1),mismatches(15)	GTCACAAAAGCGC...|...AATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAACGGTCTCAGAACTGTTTGTTTCAATTGGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCgTGTGGCAGTTTTAAGTTATTAGTTTTTAAAATCAGTACTTTTTAATGGAAACAACTTGACCAAAAATTTGTCACAGAATTTTGAGACCCATT	.	.	.
TALL_VC068	EEF1A1P13	DNAH5	-/-	-/-	5:14652472	5:13940396	exon	intron	deletion	upstream	downstream	0	0	3	27	0	low	.	.	low_entropy(1),mismappers(1),mismatches(13)	TACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGT...GCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTAcTGTTCCTGTTGGCCGAGTGGAGACTGGTgTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTT...|...TAAGGGCCATT	.	.	.
TALL_VC068	MIB1	SNRPD1	+/+	+/+	18:21705123	18:21622725	splice-site	splice-site	duplication	downstream	upstream	1	0	2	38	2100	low	.	.	duplicates(2)	GGGATCCCCAAGGGTGGGCCGAGAGCTGACGGATCGGCAGCGCTGGTTAAGGCCCCGCACCTGCAGCCCCAGTGACCTTGAACGATTCCGCTCTGCGGCGGGTGTCCCTAAACTAGCAGTTTAGGGTGTCAG|ATTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAACGGAACACAGGTCCATGGAACAATCACAG___ACAGTTTACCTCTGGATACACTACTTGTGGATGTTGAACCTAAGGTGAAATCTAAGAAAAGGGAAGCTG___TTGCAGGAAGAGGCAGAGGAAGAGGAAG	.	.	.
TALL_VC068	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	0	0	27	60	low	.	.	mismappers(2)	CGAGAAGCTGGGCAGCCTGGTGGAGAACAACGAACGGGTGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTG	out-of-frame	EKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGF	.
TALL_VC068	PKP4	BAZ2B	+/.	-/.	2:158527795	2:159338805	intron	intron	deletion/5'-5'	downstream	upstream	0	0	2	4	32	low	.	.	mismappers(1)	.	.	.	.
TALL_VC068	ZNF644	HFM1	-/.	-/.	1:91001289	1:91300413	intron	intron	deletion/read-through	downstream	upstream	0	0	2	10	2	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL_VC068	EEF1A1P12	UXS1	-/-	-/-	2:106697673	2:106135345	exon	intron	deletion	upstream	downstream	0	0	2	121	1	low	.	.	mismappers(2),mismatches(6)	GACTGGTGTTCTCAAACCcGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCgTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGcTTCACTGCTCAGGTGATTATCCTGAACCAT...|...AATTACCTTGGGCAGTATGGCCATTTTCACaATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAA	.	.	.
TALL_VC068	FOXK2	RAB40B	+/.	-/.	17:82631600	17:82678882	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	3	1	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL_VC068	CPA4	CPA5	+/+	+/+	7:130322761	7:130359589	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	0	1	19	2	low	.	.	.	GACAACCTCTACTAGGCGATGGCTCTGCTCTGTCTACATTTATTTGTACCCACACGTGCACGCACTGAGGCCATTGTTAAAGGAGCTCTTTCCTACCTGT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCACACCCTGGAGGAG___ATATATAGCTGGATTGACAACTTTGTAATGGAGCATTCCGATATTGTCTCAAAAATTCAGATTGGCAACAGCTTTGAAAACCAGTCCATTCTTG	out-of-frame	DNLY*amallclhlfvptrarteaivkgalsyl|caag*	.
TALL_VC068	ITM2B	FNDC3A	+/+	+/+	13:48260500	13:49058153	intron	intron	deletion	downstream	upstream	0	0	2	64	3	low	.	.	mismappers(1)	GGTCAAATGGTATTTCTGGTTCTAGATCCTTGAGGAATTGCCACACTCTCTTCCACAATGGTTGAACTAATTTACACTCCCACCAACAGTGTAAAAGCGTTCCCCAATAGGTAGTTTTTCAAC...|...AAaAtCCGAGCTCCCCGAGTGAGCAATTCCTGTCCCTTTTAAGGGCTCACAACTCT	.	.	.
TALL_VC068	PABPC3	ATP8A2	+/+	+/+	13:25097307	13:25470491	CDS	intron	deletion/read-through	downstream	upstream	0	0	2	18	0	low	.	.	low_entropy(1),mismatches(2)	CTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGaGTTTTCTCCATTTGGTACAATCACTAGTGCAAAGGTTATGATGGAgGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCACTAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCG...|...GATGGAGCTGC	.	.	.
TALL_VC068	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69062990	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	24	14	low	.	.	.	GCGGTGGCGGCGACTGGCCGGCGGGGCTGACCACTTACCGCAGCATCCAAGTCGGCCCTG___CCCCTGCGGcTCCGCCGGCTTCTCCGTCCCTTCTTCCTGCTGCAGAACTCCTCTATGATGAAGAAGACCTTGAAATGCATCCGCTGGTCGCTGCCGGAAATGGCCAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACT	out-of-frame	GGGDWPAGLTTYRSIQVGPAPAaPPASPSLLPAAELLYDEEDLEMHPLVAAGNGQ|*	.
TALL_VC068	STK32B	RP11-478B11.2(151916),ZWINT(458404)	+/+	./-	4:5499673	10:55898824	3'UTR	intergenic	translocation	downstream	downstream	0	0	2	12	2	low	.	.	.	AAAGGTCTGATATGTTGGCCCCTTCTATGGAAACAACGCTGCCAAATCCTGGAGCAAAACCTGAAGTGTCTTCATGTGCATTCTCTGGCAGGCCACAGTCCT[tct]GAGCTTGTAAGATGGTGCAGC...|...ACTGTTTTGTTTACAAGTTGCTCATTGCCCTCTGTGCCTAGGGTCTGAGCCTCTGTGTACACAGCCACACATCAAATCCCCTCTACTCATGCACGTGCTTTATTTTCTCATGGAATTCACTTACAA	.	.	.
TALL_VC068	RNF103-CHMP3	IMMT	-/-	-/-	2:86555300	2:86157224	intron	intron	deletion/read-through	upstream	downstream	0	0	2	8	45	low	.	.	mismappers(1)	TGACAGTCAC...|...AAATAAAAAAGTGACAGTATGATTTATGAGAGAGAATAATGTGGAGAAATACAAAGTTCAGTCTGGGACCAGTGACTTTTGTTTAGACACTGGATAGCTACCATCGAGCAAAGAAGGCATTGTGG	.	.	.
TALL_VC068	LCMT2	TGM7	-/-	-/-	15:43328515	15:43293631	CDS	splice-site	deletion/read-through	upstream	downstream	0	1	1	46	3	low	.	.	.	CACAACCATACTAGTATCCTTCTTCCTGAAGAGCAACAGCTCCTGCTCCTTGGAG|TGGCAACCTTGCGGCTTGAGTCTGTCGACCTGCAGAGCTCCAGGAACAACAAGGAGCACCACACGCAGGAGATGGGCGTCAAGCGGCTCACTGTG...GGCCAGCCCTTCTACCTCCGGCTGAGCTTCAGCCGACCCTTCCAGTCCCAGAACGACCACATCACCTTTGTGGCTGAGACCG___GACCCAAGCCGTCAGAGCTGCTGGGGACCCGAGCCACATTCTTC	in-frame	HNHTSILLPEEQQLLLLG|vATLRLESVDLQSSRNNKEHHTQEMGVKRLT	.
TALL_VC068	N4BP2L2	CBX1	-/-	-/-	13:32517857	17:48077041	splice-site	splice-site	translocation	upstream	downstream	1	0	1	442	242	low	.	.	.	GTTTCATGAACCTGAAACTTGGTGGAAATTTGATCCTGAAGAATTAGAAAA___GAGGAATAAACATGGTGTGTCTCGAAAGAAGATTGCTCAGATGTTGGATCGTTATGAATATCAAATGTCCATTTCTATTGTAATGtATTCAGTGGAACCATCACACAAAAGCACACAAAGACCTCCTCCTCCACAGGGGAGACAGAG|CAGCGTCACCCTTTACACCAGAAAGCTGGCGG	out-of-frame	FHEPETWWKFDPEELEKRNKHGVSRKKIAQMLDRYEYQMSISIVMySVEPSHKSTQRPPPPQGRQs|svtlytrkla	.
TALL_VC068	GOSR1	CDC27	+/+	-/-	17:30484770	17:47132374	splice-site	splice-site	inversion	downstream	downstream	0	2	0	75	191	low	.	.	.	GCAGAATATACCAACAGTGCAGGTGTCCCCTCCTTGAATGCAGCCCTGATGCATACATTACAGCGGCATAGAGACATATTGCAG|GTATGGTTTAGGAATGATTTATTACAAGCAAGAAAAATTCAGCCTTGCAGAAATGCATTTCCAAAAAGCGCTTGATATCAACCCTCAAAGTTCAGTTTTACTTTGCCACATTGGAGTA___GTTCAA	out-of-frame	AEYTNSAGVPSLNAALMHTLQRHRDILQ|vwfrndllqarkiqpcrnafpksa*	.
TALL_VC068	ATP10D	NFXL1	+/+	-/-	4:47525642	4:47875293	splice-site	splice-site	inversion	downstream	downstream	0	1	0	22	62	low	.	.	.	GAAAGCCCAAACAATGACCTCAGCAGATTCCGAGGCTTCCT|GCTGGCCCAGAATGCCTTCATTGTGAGGAAGGGTGCTCCAAGTCACGGCCACTAGGTTGTCTTCACCCATGTATTTTGCGATGTCACCCTGGAGAATGTCCACCTTGTGTTCAGATGCTTAGAATAAAATGTCACTGTA	out-of-frame	ESPNNDLSRFRGFl|laqnafivrkgapshgh*	.
TALL_VC068	ATP10D	NFXL1	+/+	-/-	4:47525642	4:47851148	splice-site	splice-site	inversion	downstream	downstream	0	1	0	22	116	low	.	.	.	AAACAATGACCTCAGCAGATTCCGAGGCTTCCT|ATAAAAGAAGCAGAAGCCAAAGCTGCTCTTGAAGAAGAAAAACGAAGACAACAG___GCTGAACTAGAAGCTTTTGAAAACAGACTGAAGGGTCG...ATCACTATGGCAAAAACATAAATATTATCTCATTTCAGTGTGTGGAGTTGTGGTTGTAGTGTTTGCCTGGTACATCACCCATGATGTCAATTAAAAAAAGTTTTGATCTTTTAATGTAACTCAG	out-of-frame	NNDLSRFRGFl|*	.
TALL_VC068	KDM3B	ANKRD12	+/+	+/+	5:138377825	18:9275524	splice-site	splice-site	translocation	downstream	upstream	0	1	0	70	69	low	.	.	.	GTTAATGCTTTGATCAGTGACCAAAAGCTACAAGAGATATTCAGCCGAG|GAAAAACTCATTGTATCCAACGAACAAGAAGTTTTGCGAGTTCATTACAGAGCTGCAAGAACATTGGCAAATCAAACACTGCCATTTAGTGCTTGTACTGTTTTGCTGGATGCCGAAGTATACAATGTACCATTGGACTCTCAG___TCTGATGACAGTAAAACTTCTGTGAGGGATCG	out-of-frame	VNALISDQKLQEIFSR|gkthciqrtrsfasslqscknigksntai*	.
TALL_VC068	ANKRD13C	SLC20A1	-/-	+/+	1:70324853	2:112658974	splice-site	splice-site	translocation	upstream	upstream	0	1	0	59	381	low	.	.	.	TGGAGCCCTCTGGCGGAAGCCATCAGCTATGGAGATAGGCAGATGA|GCTGTGGTGGAGGAGAGAACAGTCTCATTCAAACTTGGAGATTTGGAGGAAGCTCCAGAGAGAGAGAGGCTTCCCAGCGT...AGTGCAGTTGCCTAATGGGAACCTTGTCCAGTTCAGTCAAGCCGTCAGCAACCAAATAAACTCCAGTGGCCACTACCAGTATCACACCGTGCATAAGGATTCCGGCCTGTACAAAGAGCTACTCC	out-of-frame	WSPLAEAISYGDRQM|scgggensliqtwrfggssrereasq	.
TALL_VC068	KIF2A	THUMPD3-AS1	+/+	-/-	5:62306536	3:9391826	splice-site	splice-site	translocation	downstream	downstream	0	1	0	180	248	low	.	.	.	CGGCCAACTTCGGCAAGATCCAGATCGGGATTTACGTGGAGATCAAGCGCAGCGATG|GTGTGGAAACAGGAAGAGAACTAGAACTGGAAGTAAAGCATTGAAGATGTGACTGAATTGCTGCAATCTCATGATCAAATTTGAATGGATGAGGAGTTGCTTTTTAGGGATGAGCAAAGAAAGTGGTTTCTCGAGATGGAATCTACTGGTGAAGTTGCTGTGAACATTGTTAAAATGCC	out-of-frame	ANFGKIQIGIYVEIKRSD|gvetgrelelevkh*	.
TALL_VC068	RAPGEF5	STEAP1B	-/-	-/-	7:22308339	7:22494886	splice-site	splice-site	duplication	upstream	downstream	0	1	0	100	13	low	.	.	.	ATGGTGTCAAGCTTTTACTGCAACTTGTGCCTCTCATTCCTGCCAGAGGTGGCATCTGTGAACT|GTGGCTGAAGCCATACTATTTTATAGAATTAATGGAAAGCAGAAAAGACATCACAAACCAAGAAGAAATTTGGAAAATGAAGCCTAGGAGAAATTTAGAAGACAACGATTATTTG___CATaAGGACACGGGAGAGACCAGC	in-frame	GVKLLLQLVPLIPARGGICEl|wlkpyyfielMESRKDITNQEEIWKMKPRRNLEDNDYLHkDTGET	.
TALL_VC068	RFX8	SMEK2	-/-	-/-	2:101474636	2:55615506	splice-site	splice-site	deletion	upstream	downstream	0	1	0	207	304	low	.	.	.	CGCGACCAGATTGGAAAAGGT|GATCACTACTCTTGGAATCAAAGATAAATCCAAATACTGCATATCAGAAACAACAGGCAAGTAGTTGTTTATCTTTAATTTGAAAGACTTCATCTGTGATCAAGG...GTTTGGTAAACAAAGATCATGTGTATTTCTCTTGCAGGTTAAAAGTTTCAGACTGAAAAAAAGTTTTTGTACTGGTGATAATTATCATTTTTGGATTGAGCCACTGTCGGTTTATTCTAAGATG	.	.	.
TALL_VC068	CYSLTR2	CEP152	+/+	-/-	13:48654017	15:48748610	splice-site	splice-site	translocation	downstream	downstream	0	1	0	729	80	low	.	.	duplicates(1)	GGCAGCTGAAAGACAGAGACCTTCAG|ATAAGAAAAAGGTCCTTGAAATTAAGGATTTATGCTGTGGACACTGCTTCCAAGAACTTGAAAAGGCAAAGCAGGAATGTCAAGATCTGAAAGGAAAACTGGAGAAATGCTGTAGGCATCTTC	.	.	.
TALL_VC068	ELOVL6	LEF1	-/-	-/-	4:110198247	4:108079614	splice-site	splice-site	deletion	upstream	downstream	1	0	0	112	1145	low	.	.	.	GAACACGTAGCGACTCCGAAGATCAGCCCCAATGAACATGTCAGTGTTGACTTTACAAGAATATGAATTCGAAAAGCAGTTCAACGAGAATGAAGCCATCCAATGGATGCAGGAAAACTG|GTTTTCCCATCATATGATTCCCGGTCCTCCTGGTCCCCACACAACTGGC	in-frame	MNMSVLTLQEYEFEKQFNENEAIQWMQENw|FSHHMIPGPPGPHTT	.
TALL_VC068	ELOVL6	LEF1	-/-	-/-	4:110198247	4:108165163	splice-site	splice-site	deletion	upstream	downstream	1	0	0	112	653	low	.	.	.	GGAGAACACTCGAAATCAAGCGCTTTACAGATTATTTTATTTTGTATAGAGAACACGTAGCGACTCCGAAGATCAGCCCCAATGAACATGTCAGTGTTGACTTTACAAGAATATGAATTCGAAAAGCAGTTCAACGAGAATGAAGCCATCCAATGGATGCAGGAAAACTG|GTGGCCAGACAAGCACAAACCTCTCAGGAGCCCTACCACGACAAGGCCAGAGAAC	out-of-frame	MNMSVLTLQEYEFEKQFNENEAIQWMQENw|wpdkhkplrsptttrpe	.
TALL_VC068	C19orf25	DAZAP1	-/-	+/+	19:1478774	19:1434737	splice-site	splice-site	inversion	upstream	upstream	0	1	0	65	513	low	.	.	.	CACGGTGGAGCAGATCCTGGAGGATGTGCGGGGTGCGCCGGCAGAGGATCCAGTGTTCACCATCCTGGCCCCGGAAG|CAGGTTACGGGCAGGACTTGAGTGGCTTCGGACAGGGCTTCTCAGACCCCAGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTTTGGACGAGGGCAGAACCACAACGTGC	in-frame	TVEQILEDVRGAPAEDPVFTILAPE|aGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNV	.
TALL_VC068	FAM65B	CMAHP	-/-	-/-	6:25041851	6:25097201	splice-site	splice-site	duplication	upstream	downstream	0	1	0	310	335	low	.	.	.	GACAGGATCCGGAGGCGCCAGCTCAACC|GTACATCAAGGAAACAAACACCAAAAATGACCCAAATGAACTCAACAATCTTATCAAGAAAAACTCTGATGTGATAACATGGACCCCTCGACCGGGAGCCACCCTTGATCTGGGAAGAATGCTGAAGGATCGAACAGACAG___GTTTTGGAATCATTTTCAAATAAAA	out-of-frame	DRIRRRQLN|rtsrkqtpkmtqmnstilsrktlm*	.
TALL_VC069	RNASEH2B-AS1	RNASEH2B	-/+	+/+	13:50866386	13:50927407	intron	splice-site	deletion/read-through/3'-3'	downstream	upstream	72	53	8	256	768	high	.	.	duplicates(11),low_entropy(16),mismappers(5),mismatches(2)	AAAAAAAGAAATCACTTCCTGGCTGGGACCACTGACCACGTGGAGTTTGCACATTCTGCCCATGTCTGCACGGGTTTTCCCTGGGTACTCCAGTTTCCTCTCACCTCCCAGAGAGCCGCGCATTAGGTGAGTTGGCGTGTCTGAAGTGTCCCGGTCTGGGTGAGTATGGGTGTATGACAGTGCATCCTGCAATGGGATGGTGTCCTGTCCAGGGCTGGTTCCTGCCTTGACTCTGCGCTGCCTGGAGAGGCTCCAGCCAGTCTGGACCGTAAAATGGAATAAGCAG|AATATTTAAAAGATGCTTCAAAGAAGATGAAAAATGGGCTAATGTTTGTAAAACTGGTTAACCCCTGTTCAG___GAGAAGGAGCCATTTACTTGTTCAATATGTGTCTACAGCAGCTGTTTGAAGTAAAAGTTTTCAAGGAAAAACACCATTCTTGGTTTATAAATCAATCAGTTCAATCAG___GAGGTCTTCTCCATTTTGCCACACCTGTGGATCCTCTATTTCTGCTTCTCCACTACCTCATAAAGGCTGATAAGGAG___GGGAAGTTTCAGCCCCTTGATCAAGTTGTGGTGGATAACGTGTTTCCAAATTGCATCTTGTTGCTGAAACTTCCTGGACTTGAGAAGTTACTTCATCATGTGACAGAGGAAAAAG___GTAA	.	.	.
TALL_VC069	RB1	RCBTB2	+/+	-/+	13:48307406	13:48496587	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	42	28	2	433	363	high	.	.	duplicates(9),low_entropy(4),mismappers(1),mismatches(8)	GGGGCGTGCCCCGACGTGCGCGCGCGTCGTCCTCCCCGGCGCTCCTCCACAGCTCGCTGGCTCCCGCCGCGGAAAGGCGTCATGCCGCCCAAAACCCCCCGAAAAACGGCCGCCACCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCGCCGCCGCCGCCCCCTCCTGAGGAGGACCCAGAGCAGGACAGCGGCCCGGAGGACCTGCCTCTCGTCAG___GCTTGAGTTTGAAGAAACAGAAGAACCTGATTTTACTGCATTATGTCAGAAATTAAAGATACCAGATCATGTCAGAGAGAGAGCTTGGTTAACTTGGGAGAAAGTTTCATCTGTGGATGGAGTATTG|GAAAAAAGCATGTGCGCCTTGAATGACCCCTTCCCCTGCAATCTCAATGTCAGCTTCTCCTGGGCCACTCCCAGGAGCACACACACATGCTGTAAGAGTGCCCGCCGTGAAAAGAAAGAAAAGAAAAGAAGAAAAGAAAACAAAAGAGAAGAAAAGAAGAGAGGACAGGAGAGGGAGaGGAGGGGAgaGGAGG	out-of-frame	MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVL|eksmcalndpfpcnlnvsfswatprsthtccksarrekkekkrrkenkreekkrgqererrgee	.
TALL_VC069	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	6	13	0	58	78	high	.	.	low_entropy(1),mismappers(1),mismatches(3)	CGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...CCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGC	.	.	.
TALL_VC069	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	7	5	1	58	31	high	.	.	duplicates(2)	AGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGG...GAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAGG...ATGTTCTCTTCCAAATTTAATCTTTACATTATTAGAAAATATTTTGATGACCTGTTTTCAAATATTTTCTTATAACTTTCCATTTTCATGTGTTTATTCTGACAGTTTATTTTATCTTGTATTTAT	out-of-frame	RTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL_VC069	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	7	5	1	58	69	high	.	.	low_entropy(1)	GAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___CGAGGCAGCCGAGCTGCAGACACAGAGATGCAGATCTTTGTGAAG...GAAGTGTGGCCACACCAACAACCTGCACCCCAAGAAGGTCAAATAAGGCTCTTCCTTCCTCGGAGGGCAGCCTCCTGCCCAGGCCCCATGGCCCTGGAGCCTCAATAAAGTGTCCCTTTCATTGAC...AG___ATATTGAGAAACCACAGAAAGAGAGAAGTTAAATAATTTTCCTGTCAAAGACCACATCAATGATGAAGCCAGAATTTGAGCTCATGTACTTAAC	out-of-frame	RTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL_VC069	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	4	4	0	58	107	medium	.	.	duplicates(1),low_entropy(1)	CGCGCAGTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCG...AGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGgTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGGAGATCTATTTGGAAT	out-of-frame	HTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDs|vpfdeknkphsdstaeikektsvfwppdicylclkn*	.
TALL_VC069	MTAP	CDKN2A	+/+	-/+	9:21818202	9:21994151	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	3	7	0	58	32	high	.	.	low_entropy(1),mismappers(1)	CCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCCGTGAGCCGCGGGATGTGAACCACGAAAACCCTCACTCGCGGCGGGCCGCACGCGCGCCGAATCCGGAGGGTCACCAAGAACCTGCGCACCATGTTCTCGCCGCCTCCAGGGCCGAGCTCGGCAGCCGCTGCGCCGCCCTTTGGCACCAGAG___ATTTGGAAAACAAGCGAAATTAAACTAAAC	out-of-frame	PSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|krllp*	.
TALL_VC069	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	5	9	2	55	22	medium	.	.	duplicates(1),mismatches(3)	CTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL_VC069	RCBTB2	LINC00441	-/-	-/-	13:48496191	13:48302492	splice-site	splice-site	deletion/read-through	upstream	downstream	2	8	0	435	21	medium	.	.	low_entropy(3),mismatches(1)	CTCAGCTTGGCTGCCATCCTGGGTAGAGCCCCACACTGAAGT___GACTGCTAGACTTGGCTACATTTTATAGAGAAAATCGTTTGAAAAAGCTCTGCCAACAAACTATCAAGCAAGGCATCTGCGAGGAGAATGCCATCGCTCTGCTCTCGGCTGCGGTGAAGTATGATGCACAG|ACACTGTTATTGCCCATCTGAACTCGTCAACTGAGAAGGAAAGAGATGGTTTATGCTGTGAATAAAATACAGTTGTGCTGTGATGTAAATCCCCTCATCCTGGAGCAGCTGAGCAAGGTCTAAGGCAGGAAGAACCTTCAAGCAGGTCATGGCTGTAAGCCTCCTGAGTTTATCCCAG	out-of-frame	qlgchpg*sptlk*LLDLATFYRENRLKKLCQQTIKQGICEENAIALLSAAVKYDAQ|tlllpi*	.
TALL_VC069	HBS1L(70507),MYB(7752)	AHI1	./-	-/-	6:135173563	6:135394896	intergenic	splice-site	duplication	upstream	downstream	0	4	0	11	64	medium	.	.	.	CTGAAGTCCAAATCTTCCTTCTGAAGCCTTCTTGGACCTTGCTAATCCACAGTCATTTCTCCCACCT|GTCAACAAAAATCTCTCATTTACTTCACCACCAGCAGTTTCCTCACAACAGTCTAAGTTAAAGCAGTCAAACATGCTGACCGCTCAAGAGATTCTACATCAGTTTGGTTTCACTCAGACCG___GGATTATCAGCATAGAAAGAAAGCCTTGTAACCATCAGGTAGATACAGCACCAACG___CACTGTATCAAGAACTGCCTCCTGAGATAAAGGAGCGATCCCCTCCTTT	.	.	.
TALL_VC069	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	4	2	92	33	low	.	.	low_entropy(8),mismatches(3)	CTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAA	.	.	.
TALL_VC069	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	6	1	0	147	288	low	.	.	.	CTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC069	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	13	288	low	.	.	read_through(8)	CCGGCGGCTGTTGTCGGGCCTCCAGCGGGCGGGGCCGTTGGCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTG...GAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATAC	out-of-frame	EDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC069	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	5	0	41	43	low	.	.	low_entropy(5),mismappers(1),mismatches(2)	AAGAAGCTGAAGTTAACGGTTGATATCCTATGTCTTTCCTCAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG	.	.	.
TALL_VC069	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	2	4	0	184	26	low	.	.	low_entropy(1)	ATTCACCATgAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG___GTTTCAG	in-frame	FTmNKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|TGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGF	.
TALL_VC069	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	2	4	0	184	26	low	.	.	low_entropy(1)	ATTCACCATgAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG___GTTTCAG	out-of-frame	FTmNKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|tgssdpycivkvdnepiirtatvwktlcpfwgeeyqvhlpptfhavafyvmdedalsrddvigkvcltrdtiashpkgf	.
TALL_VC069	FAM126A	EEF1A1P6	-/-	-/-	7:22947050	7:22511325	CDS	exon	deletion	upstream	downstream	0	0	5	20	286	low	.	.	mismappers(2),mismatches(3)	GCTTGCCAGAGA...|...ACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAAgGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGG	.	.	.
TALL_VC069	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	38	70	low	.	.	.	GGCGAGTCCGGAAACCCTCGGCCAATCAGAGAGGGCTGGGGCGGCGCCTGCTAGAAGGCTTAGCACTGCAGGGCTCTGGGCGGGAAGGCTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGCAAGAGAGAAAGTGAATACGCTGATATAAGAAGCAAG___AAACCTTCCTTCCTTCCAGtTGTGTGTCAGTAGAATTACAGAGTGTCCACGGAAACAGCTCATGCCCTAGTGTACAGTGGTGCAGCCAATGAGTGACCTGAAGTCTATGAGCAACACTCATTGTC	.	.	.
TALL_VC069	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	3	1	0	48	137	low	.	.	mismatches(1)	CAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAG	.	.	.
TALL_VC069	IGF2BP3	EEF1A1P6	-/-	-/-	7:23324743	7:22511970	intron	exon	deletion	upstream	downstream	0	0	4	1	120	low	.	.	mismatches(22)	TTGAATTTTGTCAAAGGCCTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGTTCTGTTTATATGCTGGATTACATTTATTGATTTGTGTATAcTGAACCAGCCTTGCATCCCAGG...|...TGTCGTCATTGGACACGTAGATTCgGGCAAGTCCACCACTACTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCC	.	.	.
TALL_VC069	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	3	0	0	4	5	low	.	.	duplicates(1)	GAGGAACTCTGGACATTCCAGACAAAACTAATGTTGG___TCAGATACTCAATATGGCTGATATGTATGGACTAGAAGGATTgAAAGAAGTAGCAATCTATATTTTAAGAAGAGATTACTGTAATTTCT...GTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGC	out-of-frame	VESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwtea	.
TALL_VC069	RP11-286B14.1	EEF1A1P11	+/.	+/.	1:95724574	1:96447392	intron	exon	deletion	downstream	upstream	0	0	3	0	36	low	.	.	mismatches(9)	.	.	.	.
TALL_VC069	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	2	0	0	6	7	low	.	.	duplicates(1),low_entropy(1),mismappers(3)	CCTG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACG	.	.	.
TALL_VC069	PXDN	MYT1L	-/-	-/-	2:1634083	2:1897849	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	31	0	low	.	.	mismappers(1)	...GTCCAGCTGGTGCTGTTACAGAAGGCAGTGCAGGAGGCTTCCAACCAGAGCATCTGCGGAGAAGGAGGCACAGCAG|...TATGTTACGAG	.	.	.
TALL_VC069	ANKRD36B	TMEM131	-/.	-/.	2:97588036	2:97828049	intron	intron	deletion/read-through	downstream	upstream	0	0	2	5	7	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL_VC069	SPSB4	SPSB4(48141),PXYLP1(31974)	+/+	./+	3:141092343	3:141196752	intron	intergenic	deletion/read-through	downstream	upstream	0	0	2	2	5	low	.	.	mismappers(1)	GGGAGGGTAATCCTTGCTTCTCAGCATTGTTTAAGGATTAGACATAACAATGTAGAGTGAGGGCACAAACAAGGCCTGCTAAATAGTAGATATTATTATTAGCATTAGCATTAGCATATTAGCAA...|...GGAAAATCTACC	.	.	.
TALL_VC069	KAT6B	C10orf11	+/+	+/+	10:75031679	10:75634348	3'UTR	intron	deletion	downstream	upstream	0	0	2	54	0	low	.	.	mismappers(1)	CTAACAGTAAGCCATTTCTTAAGTTTTTTGCCTTGATTAGGGTGCCCTAATTTGAGGGTTTTAAAAAAAACTATATTTTTcTTAATTATAAAACTGTAAAGAGCTATAAAAGCTATTCCCATTTGG...|...AGTTTACAATT	.	.	.
TALL_VC069	CPA4	CPA5	+/+	+/+	7:130322761	7:130346407	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	1	0	13	3	low	.	.	.	TGCGGGACAACCTCTACTAGGCGATGGCTCTGCTCTGTCTACATTTATTTGTACCCACACGTGCACGCACTGAGGCCATTGTTAAAGGAGCTCTTTCCTACCTGT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGA	out-of-frame	RDNLY*amallclhlfvptrarteaivkgalsyl|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtg	.
TALL_VC069	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	14	3	low	.	.	.	GTGGTGCCTTTACTAGATTCCTAGTGG___GcCAAGGTGGCGAGGCTTGCGGCCAAAtCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCC	out-of-frame	vvpllds*waKVARLAAKsLASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralg	.
TALL_VC069	RPL6P27	L3MBTL4	-/-	-/-	18:6462806	18:6263578	exon	intron	deletion/read-through	upstream	downstream	0	0	2	56	0	low	.	.	low_entropy(1),mismappers(1),mismatches(4)	GTTGAGAAGCCAGATACTAAAGAGAAGAAACCCGAAGCCAAGAAGGTTGATGCTGGTGGCAAGGTGAAAAAGGGTAACCTCAAAGCTAAAAAGCCCAAGAAGGGGAAGCCCCATTGCAGCCGCAACCCTGTCCTTGTCAGAGGAATTGGCAGGTATTCCCGATCTGCCATGTATTCCAGAAAGGCCATGT...|...AGCCAGTATTAC	.	.	.
TALL_VC069	CDK13	SUGCT	+/+	+/+	7:40078024	7:40294389	CDS	intron	deletion/read-through	downstream	upstream	0	0	2	39	1	low	.	.	low_entropy(3),mismappers(1),mismatches(2)	ACCAGCCATTGATGTATGGAGCTGTGG___CTGTATCCTTGGCGAACTCTTCACTAAAAAACCTATATTTCAAGCAAATCAGGAACTTGCACAACTAGAATTAATAAG___CCGAATATGTGGGAGTCCAT...|...AGCCCTTGTCCT	.	.	.
TALL_VC069	NUDCD1	TRHR(71068),NUDCD1(50267)	-/-	./-	8:109245322	8:109190652	splice-site	intergenic	deletion/read-through	upstream	downstream	2	0	0	64	3	low	.	.	duplicates(1)	GTTGATGCCCTACTCTGGCAACCACACTCCAGCAAACAAGATGATATGTGGGAGCACATCGCAACTTTCAATGCTTTAG|CTCCAGCTCTGATGGCTCTCCTGGGCTCAAGTTCTTCATTCTCAGCTGCCCAGTGAAG	out-of-frame	VDALLWQPHSSKQDDMWEHIATFNAL|apalmallgssssfsaaq*	.
TALL_VC069	HDAC2	MARCKS	-/-	+/+	6:113970857	6:113859683	splice-site	splice-site	inversion	upstream	upstream	2	0	0	232	141	low	.	.	.	CCCCCACGTTTCCCTCAGCCCTTTTCTCTCCCGGCCGAGCCGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGCCCGGTGGCGGCGGTGGCCGGGGAGCCCATGGCGTACAGTCAAGGAGGCGGCAAAAAAAAAGTCTGCTACTACTACGACG|GAGAATGGCCACGTGAAGGTAAACGGCGACGCTTCGCCCGCGGCCGCCG	out-of-frame	MAYSQGGGKKKVCYYYD|gewpregkrrrfargr	.
TALL_VC069	RAB2A	TROVE2	+/+	+/+	8:60591969	1:193091651	splice-site	splice-site	translocation	downstream	upstream	1	0	0	117	143	low	.	.	.	CTTTCGTTCCATCACAAGGTCGTATTACAGAGGTGCAGCAGGAGCTTTACTAGTTTACGATATTACACG___GAGAGATACATTCAACCACTTGACAACCTGGTTAGAAGATGCCCGCCAGCATTCCA...AAAGAAGAAGGTGAAGCTTTTGCACGAGAACATGGACTCATCTTCATGGAAACGTCTGCTAAGACTGCTTCCAATGTAGAAGAG|CCTTGCAAAATACCCTACTAAATAAATCATTTTAGACATGGA	in-frame	KEEGEAFAREHGLIFMETSAKTASNVEE|PCKIPY*	.
TALL_VC069	PPP6R2	BRD1	+/+	-/-	22:50423614	22:49777813	splice-site	splice-site	inversion	downstream	downstream	1	0	0	71	85	low	.	.	.	GCGATCCTGACCACCATTGGTGTGCTGGAGGAGCCCCTGGGGAATGCCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCACACAAACACACCCAGCATCAACCAGGAGCTCTGCCGGCTCAACACGATGGACTTACTGCTG|GTCTCACCAACGGCTTTGGGGGTGCGAGGAGCGAGCAGGAG	out-of-frame	AILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLL|vsptalgvrgasr	.
TALL_VC069	DYM	MFSD11	-/-	+/+	18:49257010	17:76740957	splice-site	splice-site	translocation	upstream	upstream	0	1	0	130	41	low	.	.	.	CCTTCACACAAATTGTTTGGCAGCTTTAGCAAATATGTCGGCACAGTTTCGTTCTCTCCATCAGTATGCTGCCCAGAGGATCATCAG|CATGGCTATTATCTATGGAGTGTTCTCTGCTTCAAATTTGATTACACCGTCAGTGGTTGCCATTGTAGGACCTCAACTCTCTATGTTTGCCAGTGGTTTATTTTACAG___CCTTTCCCGTGGTCCTTCTACACAGCCTCTGTTTTCATTGGAATTGCTGCTGCTG___TG	in-frame	LHTNCLAALANMSAQFRSLHQYAAQRIIs|MAIIYGVFSASNLITPSVVAIVGPQLSMFASGLFYSLSRGPSTQPLFSLELLLL	.
TALL_VC069	RSRP1	DUSP12	-/-	+/+	1:25243550	1:161752368	splice-site	splice-site	inversion	upstream	upstream	1	0	0	830	170	low	.	.	.	CCAAGGGTATGTGTTTTAAAATTACACTTTTTCTTAACCTGTCTAGCTGTCGGAAAAGGTAACAGAAGATGGAACTCGAAATCCCAATGgAAAACCTACCCAGCAAAGAAGCATAGCTTTTAGCTCTAAT|AATTGCAGAATTTACCTCAAGAACTCTTTGCTGTTGACCCAACTACCGTTTCACAAGGATTGAAAGATGAGGTTCTCTACAAGTGTAGAAAGTGCAG___GC	.	.	.
TALL_VC069	INPP5B	C7orf55-LUC7L2	-/-	+/+	1:37869925	7:139402137	splice-site	splice-site	translocation	upstream	upstream	1	0	0	29	454	low	.	.	.	CTTGGACAGGGGAAAGGATTACTTTTTGTCTGTGTCTGGGAACTACCTGCCCAGCTGTTTTGGGTCTCCCATTCATACACTGTGTTACATGAGAGAGCCAATCTTGGACCTACCACTTGAAACCAT...ATTCCTATGGAGACAATTCTAATACAAGGGAACTAATTTGGAGCAGACCTATG|GCCATGGATCATCTGCAGTCATTCATTGCAGATTGTGATCGTAGAACAGAAGTGGCCAAGAAAAGATTAGCAG	.	.	.
TALL_VC069	INPP5B	LUC7L2	-/-	+/+	1:37869925	7:139402137	splice-site	splice-site	translocation	upstream	upstream	1	0	0	29	454	low	.	.	.	CTTGGACAGGGGAAAGGATTACTTTTTGTCTGTGTCTGGGAACTACCTGCCCAGCTGTTTTGGGTCTCCCATTCATACACTGTGTTACATGAGAGAGCCAATCTTGGACCTACCACTTGAAACCAT...ATTCCTATGGAGACAATTCTAATACAAGGGAACTAATTTGGAGCAGACCTATG|GCCATGGATCATCTGCAGTCATTCATTGCAGATTGTGATCGTAGAACAGAAGTGGCCAAGAAAAGATTAGCAG	.	.	.
TALL_VC069	MOB1B	GRSF1	+/+	-/-	4:70902550	4:70836314	splice-site	splice-site	inversion	downstream	downstream	0	1	0	85	274	low	.	.	.	CCTGGCCCACGCCGCTCCGAGGCCTCGCGACCGCCGAGCCTGCAGCCTGCCCCGCGGCCAACATGAGCTTCTTGTT|GAGTCCAgAACTACTTACCTGGAAGACCTTCCACCACCCCCTGAGTATGAATTGGCCCCGTCCAAGTTAGAAGAGGAAGTGGATGATGTCTTTCTCATTCGAGCTCAAGGACTGCCC	out-of-frame	MSFLl|spelltwktfhhplsmnwprps*	.
TALL_VC070	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	39	81	6	293	184	high	.	.	duplicates(12),low_entropy(1),mismappers(3),mismatches(7)	GGGCGCCAGAGAGCCAGGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAG	.	.	.
TALL_VC070	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	8	48	0	223	118	high	.	.	duplicates(6),low_entropy(5),mismappers(2),mismatches(4)	AAACTGTGCAAACCCTGACTGTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCT	.	.	.
TALL_VC070	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	7	10	3	48	121	high	.	.	duplicates(4),low_entropy(2),mismatches(3)	AAGAAATCTCCCCCTCG___...TTTTGAGCGCCGTG...___...CGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCC	.	.	.
TALL_VC070	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21904258	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	10	4	0	107	41	high	.	.	low_entropy(1),mismatches(2)	CGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAACACACAGGCAGCTGGATGTTGAGAGGAGCACATCAGCAGGCACCAGCACACTGGCAGGCCACTGACCAGCAGAACGCCTTGGAGTTTGGCCAGGGCAGTCGGAGGACAGCCCAGGCCGCCCAGGCTGCCGAGTGGCCTGACCCAAGGGGAAAACCATTCTCCTTTCTGGCTCCCCCATCTGCTGAGAGCTACTTCTACTTAATAAAAC	out-of-frame	RRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg*	.
TALL_VC070	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	8	0	24	30	high	.	.	duplicates(2),low_entropy(7)	AACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTG...___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCC	.	.	.
TALL_VC070	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482895	17:4483875	intron	intron	duplication	upstream	downstream	0	4	2	19	41	medium	.	.	.	.	.	.	.
TALL_VC070	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	0	1	5	64	medium	.	.	mismatches(1)	CTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCG	.	.	.
TALL_VC070	EEF1A1P5	VAV2	+/+	-/+	9:133020858	9:133794915	exon	intron	deletion/5'-5'	downstream	upstream	0	0	10	57612	4	low	.	.	duplicates(1),low_entropy(4),mismatches(35)	CTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGC...|...CTGGAAAACGTTC...CAGAAGGCCG	.	.	.
TALL_VC070	KCNJ12	PDLIM1P2(4881),RP11-728E14.3(6193)	+/+	./+	17:21419513	17:21450320	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	9	0	32	42	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	CACAGTCCCCGACCCTCTGCCCTGATTATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|GGTGTATGAAGAAAGGGCTTCAGCAGAAACAGAGGCTGAAGCCTGCGTGCTGGGGGCCGAGAGGCCAGAGGAGAATGTGATGAGACATAGAATTGGTAGTGCAGGAAGTTGGAAGATCAAGTACCGTGATGTTGGTGCTGGCTGCTTGTGTTAAACTGCCTAGGTTTTAATCTACGGTAATTTTCG...GCTcTtATGGGGTAACTGAACTGggACCAGGGCCgAGCTGTCAGTGGtCCAGGATCTGGCGaTTGGAAGAGTTCTGAGAttCACCCCTGGATCAAATGAGtAGAAACAGACTgCAgCCATACCTA	.	.	.
TALL_VC070	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	7	2	0	103	45	low	.	.	duplicates(3),low_entropy(1),mismappers(5)	CGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCA	out-of-frame	LFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC070	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	3	1	244	577	low	.	.	low_entropy(1)	CTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC070	PTGER4(3028),TTC33(17712)	TTC33	./.	-/.	5:40696763	5:40740484	intergenic	intron	deletion/read-through	downstream	upstream	1	8	0	48	25	low	.	.	duplicates(1),low_entropy(1),mismappers(1)	.	.	.	.
TALL_VC070	EEF1A1P6	DNAH11	-/-	+/-	7:22510544	7:21845332	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	9	619	7	low	.	.	mismappers(1),mismatches(28)	GATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAAcGGTCTCAGAACTGTTTGT...|...CACAACTCCTAA	.	.	.
TALL_VC070	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	6	1	2	201	273	low	.	.	duplicates(1),low_entropy(2),mismappers(1)	ATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTG	out-of-frame	FFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC070	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	2	282	273	low	.	.	duplicates(1),mismappers(1)	GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTAT	in-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSV	.
TALL_VC070	PLXNA4	CHCHD3	-/.	-/.	7:132578723	7:133034569	intron	intron	deletion	downstream	upstream	0	0	8	1	81	low	.	.	low_entropy(12),mismappers(1),mismatches(26)	.	.	.	.
TALL_VC070	EEF1A1P6	CDCA7L(83608),RAPGEF5(88546)	-/-	./-	7:22510536	7:22029692	3'UTR	intergenic	deletion	upstream	downstream	0	0	8	3058	0	low	.	.	low_entropy(2),mismatches(1)	CCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAAcGGTCTCAGAACTGTTTGTTTCAATTG...|...CAAAGAGCGAA	.	.	.
TALL_VC070	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	3	1	26	20	low	.	.	duplicates(2)	GAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAAC	.	.	.
TALL_VC070	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510749	7:22305222	exon	intron	deletion/read-through	upstream	downstream	0	0	7	499	3	low	.	.	low_entropy(6),mismappers(1),mismatches(26)	CACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACT...|...TATAAGACAG	.	.	.
TALL_VC070	SON	AP000320.7	+/.	+/.	21:33572151	21:34107727	intron	intron	deletion	downstream	upstream	0	0	7	172	3	low	.	.	duplicates(1),low_entropy(1),mismatches(5)	.	.	.	.
TALL_VC070	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	3	87	10	low	.	.	duplicates(1),mismappers(2),mismatches(1)	TGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTT	.	.	.
TALL_VC070	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	2	0	1	12	10	low	.	.	mismappers(5),mismatches(1)	ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAAC	.	.	.
TALL_VC070	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	4	1	69	18	low	.	.	duplicates(1),mismappers(1)	GCCACGCTGCCTGCATCTCGTGCTGGGGACCTGCATGCGCCAGCACCAGGGCTTGGACTGGATCTT----AGTCCATGGTGCCCAGCCTCTGCCCCAACATGCCCTCTGCATGTGACCGTCATGCCCTGG...ACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAACTGCAGCATATAGTATC	.	.	.
TALL_VC070	EEF1A1P6	FAM126A	-/-	-/-	7:22511279	7:22899287	exon	intron	deletion/read-through	downstream	upstream	0	0	6	223	0	low	.	.	mismatches(5)	...CAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAG...AAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGC|...CAGGTTGTACGTGG	.	.	.
TALL_VC070	ZNF718	ZNF141	+/+	+/+	4:163149	4:375804	3'UTR	intron	deletion/read-through	downstream	upstream	0	5	0	73	98	low	.	.	duplicates(3),low_entropy(2),mismappers(10),mismatches(1)	GTTTATgTGAAAGCATGTGATGAATTGTTGCATCAGAG|ATAAGAGAGATTCTTTTTCATTAGGTGGGCATTATTTGTGAATTTTTACAAGAAAGAGTGAGGACAGAAATGAAAGATCCATGATGAAAATCTAGCAGAGAGGCTTTTTTGTAGTTGACAATATTGAGTGATGCATGAGGTAGGTGTTCAGAGTAATATTCTTCTGCATTATAGTGAGAGAAAATCTGTTTTAGTAGTAAATTGTTTTACCAATTATACATTTATGTAATAAGATACAGTAAATTTTAAAATTATTTTAAGATTATGTGGGAACATAATTTTTTAACTAAACAAAATTTTTAACGTGTTGAAATAATTGTTGCTTGAATGAAGTGTCATTATGCCACCAACTTAAACCTATCCCACCTTACTCAATGGTGTAGGTAAAAGATG	.	.	.
TALL_VC070	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	0	5	0	15	15	low	.	.	low_entropy(1)	GAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAG	in-frame	ERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIE	.
TALL_VC070	RP11-543P15.1	CACNA1C	-/-	+/-	12:3211805	12:2573832	exon	intron	deletion/5'-5'	upstream	downstream	0	0	5	961	0	low	.	.	low_entropy(1),mismatches(3)	CCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCC...|...TTTGTAATGCAA	.	.	.
TALL_VC070	LINC01097	RAB28	-/-	-/-	4:13527537	4:13479526	exon	splice-site	deletion/read-through	upstream	downstream	4	1	0	59	154	low	.	.	mismatches(1)	CCGACGTCTGCTGTGGATCACACGCGGTCGCTGCCAAAGCCTCCATTTCGGTTCTGACCCAGTGACTTTGGGGACGCCCAGGGAGGAGATGTGGAGAGGATGTGGCCAAGGTGAACCAGCCAGT|ACCTCCTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGATAACATTGCCAG___GAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGCAG	.	.	.
TALL_VC070	ANKRD7	ANKRD7(17106),AC006926.1(202662)	+/+	./+	7:118239998	7:118259837	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	0	18	4	low	.	.	mismappers(2)	AAAGGGGCTGATGTGAATGCTTCAGATAATTATCAAAG___ATAGATACCCACAATTCACTGCGAGCCATGGAAAGAAGAAACATGCTAAATAGACACCTTATTCTTGGCACTACATGTGACTAAAGGAAG|TTTGGAGCTTATTCTTGGGGACTATTCTAAGCCTGAGGAACCAACAACCCAAG___GGCTGGAACTTGCATGAGGCAAACAAGACACCTG...___GTACTAGGCTCTTGGAGCCTTACATTCTTC...CAGAGGTGCGATCTCGGCTCATTGTAACCTCCGCCTTCTGGGTTCAAGAGATTCTTCTGCCTCAGCCTCCCAAGAAGCTAGGACTACAG___CCATGTAGGATGTGCCTCCTTCTTCTTTGCCTTTTG	out-of-frame	KGADVNASDNYQR*IPTIHCEPWKEETC*idtlflalhvtkgs|lelilgdyskpeepttqglela*	.
TALL_VC070	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	2	1	45	21	low	.	.	low_entropy(3)	TCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTC...CTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAG	.	.	.
TALL_VC070	EEF1A1P19	NIM1K	-/-	+/-	5:43495049	5:43272416	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	31	0	low	.	.	mismatches(3)	GGAAAAGATTGATCGCcGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAA...AGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGcTGGCAAGGTCACcAAGTCTGCCCAGAaAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACC...|...GAGGGGCAGAT	.	.	.
TALL_VC070	ANKRD36	RP11-734K23.9	+/+	+/+	2:97245640	2:97284044	CDS	splice-site	deletion/read-through	downstream	upstream	1	1	2	505	647	low	.	.	mismatches(1)	AGACTGAATGCTGCTCGATGTGATCATGATCAAAGTCACTCATCAAAAAGAGACCAAGAGCTTGCTTTCCAGGGCACAGTAGATAAATGTCGTCACTTACAGGAAAATTTGAATTCTCATGTTCTGATTCTTTCTCTGCAACTTTCTAAAGCTGAGA|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGA...GGCAGGCGTGTGTGGTAACACATAGGAACTGAGGGAGAGGACATTTCAAGATGGTGGGGATGCCATACAACAGGACTATGTGATGaTTTTTGGCTGTGTCCATAGGAAGTCACAACAGGCAAGGGAAAGAAACCAGAACCCAGTCATGGAGcTAAGAAGTGAGTCAGAGAGTAG	out-of-frame	RLNAARCDHDQSHSSKRDQELAFQGTVDKCRHLQENLNSHVLILSLQLSKAE|sdgis*	.
TALL_VC070	ANKRD36	RP11-734K23.9	+/+	+/+	2:97241479	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	2	750	647	low	.	.	duplicates(1),mismatches(1)	AGAAGAAATAAAATCGCAGTTAAAGCATGAAATACTTGAATTGGAAAAAGAACTCTGTAGTTTGAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAGGCAGGCGTGTGTGGTAACACATAGGAACTGAGGGAGAGGACATTTCAAGATGGTGGGGATGCCATACAACAGGACTATGTGATGaTTTTTGGCTGTGTCCATAGGAAGTCACAACAGGCAAGGGAAAGAAACCAGAACCCAGTCATGGAGcTAAGAAGTGAGTCAGAGAGTAG	out-of-frame	EEIKSQLKHEILELEKELCSLr|*	.
TALL_VC070	MTND2P28	LINC01342(1394),MIR200B(21642)	+/+	./+	1:630479	1:1145450	exon	intergenic	deletion	downstream	upstream	0	0	4	76	5	low	.	.	.	CCCACATAGGATGAATAAtAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACgACCCTACTACTATCTCGCACCTGAAACAAGaTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACC...|...GCTGACCCAAC	.	.	.
TALL_VC070	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	1	0	19	45	low	.	.	mismatches(1)	GGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACATTCTCTTCTGCACAAGTTGCCTTTGT___GTGTC	out-of-frame	DGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTFNILFCTSCLCV	.
TALL_VC070	EIF1B-AS1	MYRIP	-/-	+/-	3:40301236	3:40154249	intron	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	32	2	low	.	.	mismappers(1)	CTTGACTCCCCTTCTCTCGCTGTGCAGTGGCGGCGCCGAGGGGTCGACGCTCAGGGCTAATCTCTATGAGTCACCCTCGAGGCCCCGGGTAAT___ATTGGGTGGATCACAAGAACTAATCTTTCATGATTTGGAAACCGGAAGGAAAGAAGCACTTTTGTAGCTGACTTACCTCAATGACATGACCAGTGTCTGAGCCTACAACTGCGCTATCTTCCCTGGATTTTTCTTCACCTTTTCgTTACTCATGAGCCAGG...|...CGCTTGGGAGCACTGCTGAGGAACTGATGGCAGTACGAG___ATGGAGCTAAGATTGGAACTGAGGTCTGGCTATAAAGCTGCCTTTATGTCCATCGCATCCTAAGGGCTGCTGTTGCTCTTCTGCC	.	.	.
TALL_VC070	PEAK1	TSPAN3	-/-	-/-	15:77106597	15:77059314	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	3	10	38	low	.	.	duplicates(2),low_entropy(1),mismappers(6),mismatches(2)	GCTCACgCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAG|GTCAGGACATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCAGGTGTAGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGACGGAGCCTGCAGTGAG	.	.	.
TALL_VC070	RORA	ANXA2	-/-	-/-	15:60781357	15:60357212	intron	CDS	deletion	upstream	downstream	0	0	3	1	1010	low	.	.	mismatches(1)	GCTGGTTATGTTTTC...|...CTCATTGAGATCATCTGCTCCAGAACCAACCAGGAGCTGCAGGAAATTAACAGAGTCTACAAGGAAA___TGTACAAGACTGATCTGGAGAAGGACATTATTTCGGACACATCTGGTGACTTCCGC	.	.	.
TALL_VC070	TTLL5	GPATCH2L	+/+	+/+	14:75943114	14:76175525	intron	exon	deletion/read-through	downstream	upstream	0	0	3	1	15	low	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(3)	GGAAGAGCTGG...|...ACTTTAAGTTAATAATTTTTCTGCTGTAACAAATAGCTCATTTTTCACCCATCTTTTCCCTTGGCCCCCCTACCATGTCTGTCTGTGACCAGGAGGCATAGCTATAAGAAATGCAGAACATGA	.	.	.
TALL_VC070	EEF1A1P13	TRIO	-/-	+/-	5:14652326	5:14526688	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	95	1	low	.	.	duplicates(1),low_entropy(7),mismappers(1),mismatches(15)	GCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTAcTGTTCCTGTTGGCCGAGTGGAGACTGGTgTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTC...GAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGaGTGAAGCTCTTCCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACC...|...AAAAGACCAAAAGCC	.	.	.
TALL_VC070	NPR3	RP11-36C20.1	+/.	+/.	5:32731964	5:33162376	intron	exon	deletion	downstream	upstream	0	0	3	1	169	low	.	.	.	.	.	.	.
TALL_VC070	ALG13	TRPC5	+/+	-/+	X:111737961	X:111869552	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	16	0	low	.	.	mismatches(1)	TAACCTCTAACTCTTCAAAATTGACCTGCCAGAGcTCCCTTTTAGGACAGTATTCCTCACTGGGAAGAAACTGCTAAGAGTGGAATCTGAATTGcTCAGGATAGAGAAAAGAGCAGGaCAGGGAA...|...TAGGTTGAAG	.	.	.
TALL_VC070	DDX4	IL6ST	+/.	-/.	5:55754442	5:55944800	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	1	8819	low	.	.	mismappers(1)	.	.	.	.
TALL_VC070	DTX2P1-UPK3BP1-PMS2P11	CCDC146	+/+	+/+	7:77018997	7:77236947	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	74	60	low	.	.	mismappers(3)	AGAAAACCCCCTACCCCCACCCCAGAGGGACCACAGTCAGCGTGAAGCAGTTATTTTCTACGCTACCTGTGCGCCATAAGGAATTTCAAAGGAATATTAAGAAG___AAACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGtTTCTTGAGGGCTCCCCAGCCATGCTTCCTGTACAGCCTGCAAAACT|TTACATGCTATGGGAAAACTTCCTGGAACCAGAATGGCAGCGTTAAAAGCCAAGTATACCTTGCTGCATGACGCCGTGATG	.	.	.
TALL_VC070	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121447	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	7	5	low	.	.	mismappers(1)	CCCACAGTCAGAA___AAAATTCTTGCTGCTGTATTGAGAACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|ATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCgGTCTGGAAC	out-of-frame	PQSEkilaavlrtd*enkgrsretsqeliavsgwsgtpglklssclglpkcwnyrhgplhlaicvly|dvpetgltrqlkrhp*	.
TALL_VC070	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121455	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	7	5	low	.	.	.	CCCACAGTCAGAA___AAAATTCTTGCTGCTGTATTGAGAACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCT...GGCCACTACACCTGGCGATCTGTGTCTTATACG|CTGGGCAGATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCgGTCTGGAAC	.	.	.
TALL_VC070	RAD17	RP11-98J23.2(17110),CDH12P2(47227)	+/.	./.	5:69408530	5:69937977	intron	intergenic	deletion	downstream	upstream	0	0	2	1	10	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL_VC070	PDPR	SF3B3	+/+	+/+	16:70154171	16:70547028	intron	intron	deletion/read-through	downstream	upstream	0	0	2	3	5	low	.	.	mismappers(1),mismatches(1)	CCGTCTCAAAAAAAAAAAAATTT...|...AAAAAAAAAAAtTTTTTTTTTtAATTGTTGAACGTTGCTTTATTCCTTTATGTCTATTTGTTACACCTTGTTGTCTAACTAGATTGTGGTCTCAATTGAGCCAGGGTGACTGACAGTTTT	.	.	.
TALL_VC070	MXI1	RBM20	+/+	+/+	10:110277525	10:110700097	intron	intron	deletion	downstream	upstream	0	0	2	4	0	low	.	.	.	GTTTAAAGGCACTTTTTACTCTGGTGTTTTGTTGTTGTTGCTGTTTGTTTGCTTTTTTTGGTCTGCTGAGCAAGAGCACTGTGGTCACATGAGAATCCTCACCTAAGAAATTTTCCAGTTAAA...|...CGCTTGAC	.	.	.
TALL_VC070	RP11-848P1.9	NF1	+/+	+/+	17:31034432	17:31270053	intron	intron	deletion/read-through	downstream	upstream	0	0	2	18356	8	low	.	.	mismappers(1),mismatches(5)	TTATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCG...|...TACATCCAGC	.	.	.
TALL_VC070	HSPB11	NDC1	-/-	-/-	1:53922461	1:53830874	intron	intron	deletion/read-through	upstream	downstream	0	0	2	108	3	low	.	.	mismappers(1)	ATTACTGGGTGCAAGGTTGTAAACATACTTATAGCTTTTAAAATATATTGGCTAATTGCTTTCCAGAGAAATTATATAAATATAAAAATGTAGTCATGCTTCAGGGTAGCGTATTCTGAGGCAAC...|...TTTTTTTTTTTTGAGACGGAGTTTCACTCTTG	.	.	.
TALL_VC070	SLC37A3	MKRN1	-/-	-/-	7:140398416	7:140472011	splice-site	splice-site	duplication	upstream	downstream	0	2	0	77	177	low	.	.	.	GGCGGGGGAGGCGGGCAGCGGAGCCAAGCTGACCCGGCGAGCGGAGCCGGGGCTGGAGAGCGGCGACCACTGCGGATCTCGG|GTATTTTATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGACCTCTCTGACAGTCCGTATAGTGTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTATGGAGACCGCTGCAG___ATATGAACATAGCAAACCATTGAAACAGGAAGAAGCAACTGCTACAGAGCTAACTACAAAG	.	.	.
TALL_VC070	ALDH1A2	XPO1	-/-	-/-	15:58013858	2:61502310	splice-site	splice-site	translocation	upstream	downstream	0	1	1	1754	359	low	.	.	.	GAAAGGGGACGTCTGTTGGATAAGCTTGCAGACTTGGTGGAACGGGACAGGGCAGTTCTTGCA|GAATAAAAAAATACGTTGTTGGCCTCATTATCAAGACGTCATCTGACCCAACTTGTGTAGAG___AAAGAAAAGGTGTATATCGGAAAATTAAATATGATCCTTGTTCAG___ATACTGAAACAAGAATGGCCCAAACATTGGCCAACTTTTATCAGTGATATTG	out-of-frame	ERGRLLDKLADLVERDRAVLA|e*	.
TALL_VC070	AC004980.7	CLK1	+/+	-/-	7:76551522	2:200861862	splice-site	splice-site	translocation	downstream	downstream	2	0	0	61	1202	low	.	.	.	GGCGGATCTGGGCCCCGAGAAGGACACCCACCTGGATTTGCCCCATAGGCCCGGCCCGGGCCCCTCGGGAGCAGAACAGCCTTGGTGAGGTGGACAGGAGGGGACCTCGTGAGCAGACGCGTGCGCCAGCGACAGCAGCCCGCCCCG...AGGTCTATCAGCCACAGTCTCTGCAAGTTTCCAAGAGCAGCAGAAAATGAACACATTGCAG|ATGAGACACTCAAAGAGAACTTACTGTCCTGATTGGGATGACAAGGATTGGGATTATGGAAAATGGAG	.	.	.
TALL_VC070	PLXDC2	MALRD1	+/+	+/+	10:20068239	10:19595194	splice-site	splice-site	duplication	downstream	upstream	1	0	0	21	99	low	.	.	duplicates(1)	AGCCGGGATTTATGGGTGAACATAGACCAAATGGAAAAAGATAAAGTGAAGATTCATGGAATATTGTCCAATACTCATCGGCAAGCTGCA___AGAGTGAATCTGTCCTTCGATTTTCCATTTTATGGCCACTTCCTACGTGAAATCACTGTGGCAACCGGGG|GTCCTGTCCCAGTGCAGCCATCACCCTGTGAAGCTGATCAGTTTTCTT	in-frame	SRDLWVNIDQMEKDKVKIHGILSNTHRQAARVNLSFDFPFYGHFLREITVATG|gPVPVQPSPCEADQFS	.
TALL_VC070	ITPR1	BBX	+/+	+/+	3:4521094	3:107728765	splice-site	splice-site	deletion	downstream	upstream	1	0	0	41	105	low	.	.	.	AAAGACATGTCTGACAAAATGTCTAGCTTCCTACATATTGGAGACATTTGTTCTCTGTACGCGGAGGGATCGACAAATGGATTTATTAGCACCTTGGG___CCTGGTTGATGATCGTTGTGTTGTACAGCCAGAAACCGGGGACCTTAACAATCCACCTAAGAAATTCAGAG|TATAAGGATGCATTTATGAAAGCAAATCCTGGCTACAAATGGTGTCCTACCACAAACAAGCCTGTGAAATCCCC	out-of-frame	MSDKMSSFLHIGDICSLYAEGSTNGFISTLGLVDDRCVVQPETGDLNNPPKKFR|v*	.
TALL_VC070	PROSER1	UBE3A	-/-	-/-	13:39037198	15:25340228	splice-site	splice-site	translocation	upstream	downstream	0	1	0	109	558	low	.	.	.	ATAGTAGTCAAGATGGATAAAAAGTCCTTTGAAATGGTGCTGGATGAAATTAGAAAG|GGAGTTCTGGGAAATCGTTCATTCATTTACAGATGAACAGAAAAGACTCTTCTTGCAGTTTACAACGGGCACAGACAGAGCACCTGTGGGAGGACTAGGAAAATTAAAGATGATTATAGCCAAAAATGGCCC	out-of-frame	MDKKSFEMVLDEIRK|gvlgnrsfiyr*	.
TALL_VC070	HDAC4	NDUFA10	-/-	-/-	2:239236593	2:239961186	splice-site	splice-site	duplication	upstream	downstream	1	0	0	97	755	low	.	.	.	GAACTGTTGGCCACTGGTGCTCTTCAGACTCCATCGGCTTCCTCGGGAGG___ATGGACTTTCTGGCCGAGACCAGCCAGTGGAGCTGCTGAATCCTGCCCGCGTGAACCACATGCCCAGCACGG|CTGCCGGGCCGCAAGTACAGCCCTGGGTACAACACCGAGGTGGGAG	out-of-frame	ncwplvlfrlhrlpreDGLSGRDQPVELLNPARVNHMPST|aagpqvqpwvqhrgg	.
TALL_VC070	TRAPPC9	AGO2	-/-	-/-	8:140252777	8:140585311	splice-site	splice-site	duplication	upstream	downstream	1	0	0	95	40	low	.	.	.	ATTGGAAAATATTGGAATGGAACCATTGGAGAAACTGGAGGTCACCTCGAAAGTTCTCACCACTAAAG___AAAAATTGTATGGCGACTTCTTGAGCTGGAAGCTAGAGGAAACCCTTGCCCAGTTCCC...GTGAAGCTGGATTTCTCCTGCCAGGAGAATCTCCTGCAGGATCTCAGTGATG|CACTTGCACCTCCTGCGCCGCCGCCCCCCATCCAAGGATATGCCTTCAAGCCTCCACCTAGACCCGACTTTGGG	in-frame	VKLDFSCQENLLQDLSD|aLAPPAPPPPIQGYAFKPPPRPDF	.
TALL_VC070	CHFR	FBRSL1	-/-	+/+	12:132841518	12:132567481	splice-site	splice-site	inversion	upstream	upstream	1	0	0	379	215	low	.	.	.	GCGCAGCTTCCGTGAGCTGACCTATCAGTATCGGCAGAACATTCCTGCTTCCGAGTTGCCAG___TGGCCGTAACATCCCGTCCTGACTGCTACTGGGGCCGTAACTGCCGCACTCAGGTGAAAGCTC...CAATCATATCTGTGAACAGACAAGGTTCAAAAACTAAGCATCCAGAGGCCCTGAGCAGCTTTCAGCACTGGAG|GCATCCGTGGGCTCTGAGAAGCTCTTTGCGCCGGGAACCGATAAAG	out-of-frame	NHICEQTRFKN*asrgpeqlsale|ASVGSEKLFAPGTDK	.
TALL_VC070	AC012358.8	CCDC88A	+/+	-/-	2:55282434	2:55346333	splice-site	splice-site	inversion	downstream	downstream	0	1	0	24	444	low	.	.	.	CTCGAGCAGCGGCTCGGTGCCCTGGCCATCCACACTGAGGTCGTGGAGCACCCCGAG|AACATGAATTTGCTTTCGGATGCTCGCTCTGCCAGAATGTACCGAGATGAATTAGATGCACTTCGAGAGAAAGCAGTCAGAGTCGATAAGCTTGAAAGTGAAGTCAGCAGATATAAAGAGAGACTACATGATATTGAATTTTATAAGGC	.	.	.
TALL_VC070	THUMPD3-AS1	CUL4A	-/-	+/+	3:9390290	13:113260607	splice-site	splice-site	translocation	upstream	upstream	0	1	0	430	447	low	.	.	.	CTTTTTCATTTATTCTCACGGTGTGCAGAGGCTACATGATGTGTGATGACATCCTCATTGATGTTAATGAATGGTGCTATACTTGAATTTTCTAAGGTGTCATTAG|GTTGAGGAACAGGTTAGCAC...CCAGTAAAG___CCTGGAGATTTGAAAAAGAGAATTGAATCTCTGATAGACAGAGACTATATGGAGAGAGACAAAGACAATCCGAATCAGTACCACTACGTGGCCTGACGCATCTGCAGACGGTTCCCC	.	.	.
TALL_VC070	SPON2	CTBP1	-/-	-/-	4:1201269	4:1214473	splice-site	splice-site	duplication	upstream	downstream	1	0	0	120	481	low	.	.	.	GCACTCCCGGGGTGCAGACGGGGTGAAGGCAGCCTTCTCTGTGGTCACGTGCATGTAACGGCACCTTCTCTCTCAGGGCCTCCTCCCTCCCTGCGTGGTTTGGGGGCTGTTCCTGATAGCAC...GAAGCGAGCAAGGGGCTTGGAAGTGCCTGAAtCCAGTGGtCTGGGGACTCACGGCCGGGACACTCAGGcCAG|ATGAGACAAGGGGCCTTCCTGGTGAACgCAGCCCGGGGTGGCCTGGTGGATGAG	.	.	.
TALL_VC072	MTAP	CDKN2B-AS1	+/+	+/+	9:21838010	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	36	42	5	148	107	high	.	.	duplicates(8),low_entropy(8),mismatches(5)	CACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAGGTCTGTGTGATAAAAGAAGAGCCTTGGGGAAATGTTC...___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAAAgTTgggAACACTGGGCATGTG	out-of-frame	TTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|dylpqhfkgfqerilvsml*	.
TALL_VC072	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	11	8	6	374	110	high	.	.	duplicates(1),mismappers(6),mismatches(6)	CCTTTGCTCCTTTGATCAGACGT...GAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATG	.	.	.
TALL_VC072	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	11	8	153	110	high	.	.	mismappers(8),mismatches(6)	TAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAG	.	.	.
TALL_VC072	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	12	1	0	150	110	high	.	.	duplicates(1),low_entropy(1),mismappers(25),mismatches(9)	CCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGAC	.	.	.
TALL_VC072	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	7	221	110	medium	.	.	mismappers(7),mismatches(6)	TTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATG	.	.	.
TALL_VC072	AC013463.2	SCN2A	+/+	+/+	2:165091299	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	5	1	523	110	low	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(3)	AGAATAGGTGCTAGCAATCCATCCCAGCCAGCAGAG___GCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAA	.	.	.
TALL_VC072	TOLLIP	MOB2	-/-	-/-	11:1309466	11:1480885	splice-site	splice-site	duplication	upstream	downstream	1	2	0	70	67	high	.	.	.	GTCGCAGGCTCCGGCGGGGGCGCAGGAGGTCGCCCGGCGCGTCACTGTCGGGTCGGCGAGCCACGGGGGCCGCCGCAGCACCATGGCGACCACCGTCAGCACTCAGCGCGGGCCG|GAAGTCCAAAGCCAAGCCcAATGGCAAGAAGCCCGCTGCGGAGGAGAGGAAGGCCTACCTGGAGCCTGAGCACACCAAGGCCAGGATCACCGACTTCCAGTTCAAGGAGCTGGTGGTGCTGCCCCG...GTATAGCACCATCTCgGAGTTCTGCACAGGAGAGACGTGTCAGACGATGGCCGTGTGCAACAC___ACAGTACTACTGGTATGACGAGCGGGGGAAGAAGGTCAAGTGCACGGCCCCAC	out-of-frame	MATTVSTQRGP|evqsqaqwqearcggeeglpga*	.
TALL_VC072	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	19	34	2	159	86	medium	.	.	duplicates(5),low_entropy(1),mismappers(2),mismatches(2)	G___...GCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCAT...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAG	.	.	.
TALL_VC072	LMO2	TRDC	-/-	+/+	11:33870294	14:22450097	exon	CDS	translocation	upstream	upstream	6	15	8	28	83	medium	.	.	duplicates(2)	GGAGCCCGCAGCCTGGGGCCCGCAGCCCGTAGCCCGCAGCCCGCAGAGCCGCGCTGTCCGGGGCATCCCAGTGCACGGCGTCCGTGGACCTGGGACCTCGAACCTGGGACGGGCGGAAAATCCACTGGGAACACTTGCATTTCTGTAGGTGCTTATTTCACATTCTTGTCTTTTCTTGCTTGCTCGAGCTGTTCG|AAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAACCAA___GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAAC	.	.	.
TALL_VC072	LMO2	TRDC	-/-	+/+	11:33870345	14:22462932	splice-site	splice-site	translocation	upstream	upstream	1	0	2	22	195	low	.	.	.	CCACCATCGCCTCTcCAGAGCGCGGCCGCAGCCCGGAGCCCGCAGCCCGGAGCCCGCAGCCTGGGGCCCGCAGCCCGTAGCCCGCAGCCCGCAGAGCCGCGCTGTCCGGGGCATCCCAGTGCACGG...CGAACCTGGGACGGGCGGAAAATCCACTGGGAACACTTGCATTTCT|GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTA...AAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCgCgCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAACACGACAATAAAACTGTGCACTCCACTGACTTTGAAGTGAAGACAGATTCTAC	.	.	.
TALL_VC072	LMO2	TRDJ1	-/-	+/+	11:33870294	14:22450097	exon	CDS	translocation	upstream	upstream	6	10	6	28	83	medium	.	.	duplicates(2)	GGAGCCCGCAGCCTGGGGCCCGCAGCCCGTAGCCCGCAGCCCGCAGAGCCGCGCTGTCCGGGGCATCCCAGTGCACGGCGTCCGTGGACCTGGGACCTCGAACCTGGGACGGGCGGAAAATCCACTGGGAACACTTGCATTTCTGTAGGTGCTTATTTCACATTCTTGTCTTTTCTTGCTTGCTCGAGCTGTTCG|AAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAACCAA___GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATCCAAG	.	.	.
TALL_VC072	HNRNPC	ZNF219	-/-	-/-	14:21269298	14:21093674	splice-site	splice-site	deletion/read-through	upstream	downstream	10	8	0	1509	65	medium	.	.	low_entropy(3),mismatches(1)	ATT?TG?G?AGAGACGAAGACTGAGCGGTTGTGGCCGCGTTGCCGACCTCCAGCAGCAGTCGGCTTCTCTACGCAGAACCCGGGAGTAGGAGACTCAGAATCGAATCTCTTCTCCCTCCCCTTCTTG|CTCCACAGCACCTGTTGCCTTCATTAGCAGCTTTTCCTCCTCTTCCCTGCACTTCCCAGAACCAAAGAATGTGAAGGGGGTCCATGGAGGTGAGTGAAGCTCTGGCTTCAACCTACAAGTACCTACAACTGTATACTCCCTCTCCTGCCTACCTCTCTCTCTCTTTGACCTCCCATTATTAGAAGTTA...___GGCTCACGTCCCCGCGCCCCGAGCGGCCACTTAGCGCCG	.	.	.
TALL_VC072	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	7	0	104	418	medium	.	.	.	GTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC072	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	14	418	low	.	.	read_through(4)	GAAAATACGTGGTTGGAGAGCTCATCTGGAATTTTGCCGATTTCATGACTAACCAGT___CCAAGGATGAAGGAAAAACTGGACCTCATTATGGATTTACTTTTGGGATACACTCATTATTCCAGAGG...CTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCC	out-of-frame	GGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC072	C16orf72	GRIN2A	+/+	-/+	16:9110819	16:9777846	3'UTR	intron	deletion/5'-5'	downstream	upstream	2	0	1	333	3	medium	.	.	mismappers(5),mismatches(2)	AAAACTGCTACTTTTTCCCTAGAAAAGGGAAGCTCATTTTAGGCAGCCTAAACCAGTAAGATTTTCTTCCTCCTCCAAGTGCAGATTTTTGTACCTTTCGTTTGTCAAAACATTCTTTGGCCCTAT...ATTGATAATCATTTTAAGAAGAAATTTAATTGTATTTAGCTCTGTGTCTCGCCCCTTTGGTGTCACTCTTCTACCTCTTCCATCACTATAGCTAAATATTTAGAAGTATATCTTGACACCTAGCACAAATGTTTTGGTTAAGTATCTTAAAACTGATGGATGGTATGGCTGGGGCAGCATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGAATCAC|CTGGGGTCAGGAGTTTGAG	.	.	.
TALL_VC072	RP11-473I1.9	GRIN2A	+/+	-/+	16:9110819	16:9777846	exon	intron	deletion/5'-5'	downstream	upstream	2	0	1	333	3	medium	.	.	mismappers(5),mismatches(2)	AAAACTGCTACTTTTTCCCTAGAAAAGGGAAGCTCATTTTAGGCAGCCTAAACCAGTAAGATTTTCTTCCTCCTCCAAGTGCAGATTTTTGTACCTTTCGTTTGTCAAAACATTCTTTGGCCCTAT...ATTGATAATCATTTTAAGAAGAAATTTAATTGTATTTAGCTCTGTGTCTCGCCCCTTTGGTGTCACTCTTCTACCTCTTCCATCACTATAGCTAAATATTTAGAAGTATATCTTGACACCTAGCACAAATGTTTTGGTTAAGTATCTTAAAACTGATGGATGGTATGGCTGGGGCAGCATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGAATCAC|CTGGGGTCAGGAGTTTGAG	.	.	.
TALL_VC072	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	1	0	382	71	medium	.	.	low_entropy(1),mismappers(1)	GG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGAT	.	.	.
TALL_VC072	STK17B	PGAP1	-/.	-/.	2:196142140	2:196863660	intron	intron	deletion	downstream	upstream	1	0	1	57	17	medium	.	.	mismappers(2),mismatches(2)	.	.	.	.
TALL_VC072	TTYH3	MAD1L1	+/+	-/-	7:2632278	7:2069338	splice-site	splice-site	inversion	downstream	downstream	1	0	1	64	33	medium	.	.	.	GGGcGCCCCGCGCAGGCCGCGCGCATCCGGAGGCGGCCGGGCCCCGCCATGGCCGGGGTCAGCTACGCGGCGCCCTGGTGGGTGAGCCTCCTGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|CGCCCGGGGGCTGGAGAAGGCCAG...CCACGAGGCGCTGGCCCGGAGGCTCCAGAAACGGGTCCTGCTGCTCACCAAG___GAATCCCTGAGGCTGGGTCATTCTGCGGACTGTACAGGAAGCACAGCGCCGGCATCTGCTTCTGCTGAGGcACC	out-of-frame	MAGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQ|rpgageg	.
TALL_VC072	TTYH3	MAD1L1	+/+	-/-	7:2632278	7:2222754	splice-site	splice-site	inversion	downstream	downstream	0	1	1	64	26	medium	.	.	.	GGGcGCCCCGCGCAGGCCGCGCGCATCCGGAGGCGGCCGGGCCCCGCCAcGGCCGGGGTCAGCTACGCGGCGCCCTGGTGGGTGAGCCTCCTGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|CGTGAGGTCGACCGCAACCAGG...GACGCGCATCCGGCAGCTTCAGGAGCGtGAGGCCGGGGCGGAGGAGAAGATGCAGGAGCAGCTGGAGCGCAACAGGCAGTGTCAGCAGAACTTGGATGCTGCCAGCAAGAGGCTGCGTGAGAAAG	in-frame	tAGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQ|REVDRNQ	.
TALL_VC072	EEF1A1P5	VAV2	+/+	-/+	9:133020700	9:133788256	exon	intron	deletion/5'-5'	downstream	upstream	0	0	7	8981	1	low	.	.	mismatches(18)	GTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCCGGCTATGCCCCTGTATTGGATTGCCACAcGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTT...|...TGACTTCGAG	.	.	.
TALL_VC072	GSG2	ALOX15(10455),PELP1(17025)	+/+	./+	17:3726567	17:4652749	3'UTR	intergenic	deletion	downstream	upstream	4	0	0	86	7	low	.	.	duplicates(2),mismappers(4)	GTTTAAGTAAGCTAAATGTATCTTACTGCCCCGAAATGAGAGGAGACTGGTCTTGAAGCCTCTGGTGCTGTTTCAACCTCCATCCCCACAGGAGGGTGGAACTCCCATTCTCACAGGTTTCCAGTCAGCTTTTCAAACAAGAATTTTGTTTCCAAATGGAAACTGAAATATTTGTTGAAATGTTTAAATTTGCTGATAACAAATGTTCTGAAAGAAGTAAACTAGCCGGGCACAGTGGCGTGCGC|CTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGG	out-of-frame	FK*akcillprnerrlvlkplvlfqppspqeggtpiltgfqsafqtrilfpngn*nic*nv*ic**qmf*kk*tsraqwra|pavpatreaea	.
TALL_VC072	AP000783.1	GRAMD1B	+/+	+/+	11:123480893	11:123577367	intron	splice-site	deletion/read-through	downstream	upstream	3	0	0	16	11	low	.	.	.	CGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG...AGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGC	.	.	.
TALL_VC072	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	20	34	low	.	.	low_entropy(1),mismatches(1)	GGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGCGGGGGGGGGAAAGACTGATTTTTTTTTTTgGcCcgTCTgGGGtctGCTtTT...ATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGC...GAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCC	.	.	.
TALL_VC072	ARHGEF10	KBTBD11	+/+	+/+	8:1952827	8:2000285	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	198	23	low	.	.	duplicates(1)	CTGGGAGTCCTCGTGGCCCTGCCGGTCCCACGTCTGCAAGGGATTCCCAAAGTGACCG|GAACAAGAGTGTGGTGAGAGGACGCGGAAACACCTGATATCCCAGCAAAGGAAGCTGCAGAGGAAGGGTCCTGCCCCGTGAGCGAGG...AGGAGCACAGCGGCTTCTCCTAACATCCCCCTGGCAGTGAATTACGGATGACCCCGTATATGAGGAGGTGTGGATGCCGACACACGGGGAGAGCTCCTGAGACCAGCACACAGGACCAGTGTCCTC	out-of-frame	LGVLVALPVPRLQGIPKVT|gtrvw*	.
TALL_VC072	RSBN1L	RSBN1L	+/+	+/+	7:77778446	7:77749424	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	1	2	0	114	185	low	.	.	duplicates(1)	GTGCACTGTGGAGAGTG___GCCTGATCAACCCCGTATAACCAAAGATGTAATTTGTTTTCATGCTGAAGATTTCTTAGAAGTAGTTCAACGAATGCAGTTAGATTTACATGAACCTCCACTGTCCCAG|GTGGGAAGGAGAAACCAAAAACAAATATAGAAGACTTACAAATTAAAAAGGTAAAGAAGAAAAAGAAAAAGAAACACAAAGAGAATGAAAAACGGAAGCGTCCGAAAATGTATAGCAAATCTATTCAGACCATCTGCTCAGGATTGCTAACTGATGTTGAAGATCAAGCAGCC	out-of-frame	VHCGEWPDQPRITKDVICFHAEDFLEVVQRMQLDLHEPPLSQ|vgrrnqkqi*	.
TALL_VC072	NOC4L	FBRSL1	+/+	+/+	12:132148082	12:132525756	CDS	CDS	deletion/read-through	downstream	upstream	0	0	3	59	77	low	.	.	mismappers(1)	GGCCAGCACCCCGAG___GTGCCCCCCGCCTTTTGGAACAATGCCTTCACGCTGCTGTCTGCCGTGAGCCTGCCCCGCCGGGAGCCCACCGTCTCCAGCTTCTATGTGAAGCGGGCGG___AGCTGTGGGAC...|...GGGGCGACCGGGACAGTGACGACGACAGCGTCCTCGAAGCCACCAGCTCCCGGGACCCGCTCAGCGAT___AGCTCTGCGCATGCGGTCTCGGGGAGAGGCTACTCT___TGTGACAGCGAGAGCGGCCCGG	.	.	.
TALL_VC072	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	28	106	low	.	.	.	GTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGAC	.	.	.
TALL_VC072	EEF1A1P6	DNAH11	-/-	+/-	7:22510688	7:21790228	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	1318	2	low	.	.	low_entropy(2),mismatches(5)	CTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGcCAT...|...GTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAG	.	.	.
TALL_VC072	EEF1A1P6	CDCA7L(110163),RAPGEF5(61991)	-/-	./-	7:22510587	7:22056247	3'UTR	intergenic	deletion	upstream	downstream	0	0	3	2122	2	low	.	.	mismatches(8)	GTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCC...|...AACCATTTCCTC	.	.	.
TALL_VC072	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	0	2	0	16	11	low	.	.	mismappers(1)	CAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCcCAG	.	.	.
TALL_VC072	CERKL	PDE1A	-/.	-/.	2:181609256	2:182256126	intron	intron	deletion	downstream	upstream	0	0	2	5	2	low	.	.	mismappers(1)	.	.	.	.
TALL_VC072	FAF1	AGBL4	-/-	-/-	1:50441686	1:49843735	intron	intron	deletion	upstream	downstream	0	0	2	81	1	low	.	.	mismappers(2),mismatches(2)	CTTTCCCAAGGGCCCCCTGTTCTGCCAGCCAGGCTGAGCTGTGCAAGAAAGGTACCTCCACCAAACTTGACTATGAGATTTGATTTTCCTGAGCCCTGGTTTCCTCATTTATAAAATGAGAATAAC...|...GCTTCCCAAGATGCCCA	.	.	.
TALL_VC072	RFX3	TXLNGY	-/-	+/+	9:3330259	Y:19597591	splice-site	splice-site	translocation	upstream	upstream	1	0	1	36	323	low	.	.	.	GGGCGTCACAGGAGGACAACTCATCAGCAGCTCTGGAGGAACCTATCTGATCGGCAACTCAATGGAGAATTCTGGTCACTCAGTGACACACACAACTCGGGCCTCCCCAGCGACA|TTATTAAAAGAAGCAACAGAATCGAGGCACAAATATGAAGAAAT	out-of-frame	GVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPAT|llkeatesrhkyee	.
TALL_VC072	MELK	BCCIP	+/+	+/+	9:36581739	10:125836104	splice-site	splice-site	translocation	downstream	upstream	1	0	1	64	242	low	.	.	.	CGGCGATCGAAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAG___GTTCTTTTTCTAATTCCAAATAAACTTGCAAGAGGACTATGAAAGATTATGATGAACTTCTCAAATATTATGAATTACATGAAACTATTGGGACAG|AAGGCAATTCTCAAGTTCAACTACTCAGTGCAGGAGGAGAGCGACACTTGTCTGGGAGGCAAATGGTCTTTTGATGACGTACCAATGACGCCCTTGCGAACTGTGATGTTAATTCCAGGCGACAAGATGAACGAAA	in-frame	MMNFSNIMNYMKLLGQ|KAILKFNYSVQEESDTCLGGKWSFDDVPMTPLRTVMLIPGDKMNE	.
TALL_VC072	ALDH1A2	GLTSCR2	-/-	+/+	15:58013858	19:47754527	splice-site	splice-site	translocation	upstream	upstream	0	1	1	792	3095	low	.	.	duplicates(2)	GCAGACTTGGTGGAACtGGACAGGGCAGTTCTTGCA|ACCCTGCTCTCAGCGGCCCACGAGGTGGAGTTGCAGCGGCAGAAGGAGGCGGAGAAGCTGGAGCGGCAGCTGGCCCTGCCCGCCACGGAGCAGGCCGCCACCCAGGTGAGCCCCGCACCTGCC	in-frame	ADLVElDRAVLA|TLLSAAHEVELQRQKEAEKLERQLALPATEQAATQvspap	.
TALL_VC072	GIGYF2	DIS3L2	+/+	+/+	2:232697392	2:232130619	splice-site	splice-site	duplication	downstream	upstream	0	1	0	21	113	low	.	.	.	GCCATCTTGTGTTGTTGAGGCTGAGGACTGACTGGGGTTCTGAGACTCCCTGTCCCGGACCGCAG|GAAGAGAGGATGGTGATGCACCGGTTACAAAAGATGAGACCACCTGCATTTCACAAGACACAAGAGCTTTATCGGAGAAATCCCTGCAAAGATCAGCAAAGGTCATTGCCTACAGATTTTC	.	.	.
TALL_VC072	CREBBP	FLYWCH1	-/-	+/+	16:3736036	16:2929613	splice-site	splice-site	inversion	upstream	upstream	0	1	0	248	85	low	.	.	.	GGAAAAAGGAAGAGAGCACTGCAGCCAGTGAAACCACTGAG|GACGGAACCACTGCACTCCAGGTTCCcTGCTGGGTGCTGAGCGTGGCCTGAGGGACAGGCCCTGGGTCCCGGGATGCCCCTGCCCGAGCCCAGCGAGCAGGAGGGCGAGAGTGTGAAGGCCGG	out-of-frame	KKEESTAASETTE|dgttalqvpcwvlsva*	.
TALL_VC072	C5orf42	IDI1	-/-	-/-	5:37221324	10:1041504	splice-site	splice-site	translocation	upstream	downstream	0	1	0	32	332	low	.	.	.	GAAATCCTGAGATGGTCCCAACTACCTGTAAAAGAAAATAAAGATTTTTCAG|GTTCCTCCAGAAGAAATTAATTATTTAACACGAATTCACTACAAAGCTCAGTCTGATGGTATCTGGGGTGAACATGAAATTGATTACATTTTGTTGGTGAGGAAGAATGTAACTTTGAATCCAGATCCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGAAGAAC	out-of-frame	EILRWSQLPVKENKDFS|gssrrn*	.
TALL_VC072	DROSHA	GOLPH3	-/-	-/-	5:31493207	5:32143880	splice-site	splice-site	duplication	upstream	downstream	1	0	0	118	99	low	.	.	.	GCAGCGCAAAGGCAAGACGCACAGGAATTAGGCACAGCATTTATCCTGGAGAAGAG___ACTGACAGGCCAACTGTTATAGAATACGATGATCACGAGTATATCTTTGAAGGATTTTCTATGTTTGCACATGCCCCCCTGACCAAT|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGA	in-frame	SAKARRTGIRHSIYPGEETDRPTVIEYDDHEYIFEGFSMFAHAPLTN|GYTSFWNDCISSGLRGCMLIELAL	.
TALL_VC072	NSUN7	RHOH	+/+	+/+	4:40798904	4:40242714	splice-site	splice-site	duplication	downstream	upstream	1	0	0	4	288	low	.	.	.	ATTGTTAATATAGTTGTTACAGTCATTGCATCTTCTTCTAATATAGTTACTAAAGCTCAAGCAGTTGTTTACTGCACATGTTCAGTTTTTCCAGAAGAAAATGAAGCTGTTGTTAAGAAAGCACTGGAATTTCAAGACCTTGGGAATAAAGGACAACCTTACAG|TTTCCAACATGGCTAGATCCATCAGAAACTGAAGCCGTGGAGAACGCTCTCGGGG	out-of-frame	ivnivvtviasssniVTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYs|fqhg*	.
TALL_VC072	DAZAP1	SBNO2	+/+	-/-	19:1407802	19:1154402	splice-site	splice-site	inversion	downstream	downstream	0	1	0	227	108	low	.	.	.	GGGAGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|ATCATGATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCGGGTCCTGGAGTCCCGCCGCCTGCTGCCCGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTGCAGTGGGGCC	out-of-frame	MNNSGADEIg|s*	.
TALL_VC072	ABCB7	ZDHHC15	-/-	-/-	X:75098942	X:75379198	splice-site	splice-site	duplication	upstream	downstream	1	0	0	68	23	low	.	.	.	AAAGTATCACATGGCAGAGATTGGGAAAAGGCAATTCAGGACAGTTCTTAGATGCTGCAAAG___GCTCTCCAGGTATGGCCACTGATAGAAAAGAGGACATGTTGGCATGGTCATGCAGGAGGAGGAC...ACGAGCTAGAGTTGCCATTTCGCTGGGATTTTTGGGTGGTGCAAAG|ATTATCCAGAAGGCTCATCATCTCTTGCTGTGGAAACGGAAACATAGCAGTTTTCACATTTCCTGCATCTCTCAG	out-of-frame	RARVAISLGFLGGAK|iiqkahhlllwkrkhssfhiscis	.
TALL_VC072	ING1	CARS2	+/+	-/-	13:110714285	13:110688018	splice-site	splice-site	inversion	downstream	downstream	1	0	0	47	74	low	.	.	.	GGGTGAACCATGTTGAGTCCTGCCAACGGGGAGCAGCTCCACCTGGTGAACTATGTGGAGGACTACCTGGACTCCATCGAGTCCCTGCCTTTCGACTTGCAGAGAAATGTCTCGCTGATGCGGGAGATCGACGCGAAATACCAAG|ATGAATATTTCCCCCGCTTCCCTCGCCAGTCTTTATGAGGAAGACTTCAAG	out-of-frame	MLSPANGEQLHLVNYVEDYLDSIESLPFDLQRNVSLMREIDAKYQ|deyfprfprqsl*	.
TALL_VC072	TXLNG	RBBP7	+/+	-/-	X:16786589	X:16869220	splice-site	splice-site	inversion	downstream	downstream	0	1	0	29	515	low	.	.	.	GCGGCGCCGAAGAGGCGACTGAGGCCGGACGGGGCGGACGGCGACGCAGCCCGCGGCAGAAG|TGTTTGAAGATACTGTGGAGGAGCGTGTCATCAATGAAGAATATAAAATCTGGAAGAAGAATACACCGTTTCTATATGACCTGGTTATGACCCATGCTCTTCAGTGGCCCAGTCTTAC	out-of-frame	GAEEATEAGRGGRRRSPRQK|clkilwrsvssmkniksgrrihrfymtwl*	.
TALL_VC072	YEATS2	KLHL24	+/+	+/+	3:183773794	3:183679086	splice-site	splice-site	duplication	downstream	upstream	0	1	0	47	126	low	.	.	.	CGAGCTACGAACAATGCTA|GAAAACTGTGGTATGTCTGTGTGTAATGGTAAAATATATATCCTGGGCGGAAGACGGGAAAATGGAGAAGCCACAGACACTATTCTCTGTTATGATCCTGCAACAAGTATCATCACAGGGGTAGCTGCAATGCCC	out-of-frame	RATNNA|rklwyvcv*	.
TALL_VC073	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	1	9	0	45	52	high	.	.	duplicates(2),mismatches(3)	CTTCCCCGCCTGCTTCCCTCCGCCGCGCTCCCCCCTCCTTTTTTTTATTTGCATCTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCC	.	.	.
TALL_VC073	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	18	46	3	206	92	medium	.	.	duplicates(4),low_entropy(2),mismappers(2),mismatches(3)	GCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTG	.	.	.
TALL_VC073	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	1	8	2	65	90	medium	.	.	duplicates(2),low_entropy(1)	AAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGgTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGGAGATCTATTTGGAA	out-of-frame	KNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDs|vpfdeknkphsdstaeikektsvfwppdicylclkn*	.
TALL_VC073	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	3	5	2	65	23	medium	.	.	duplicates(1),mismatches(2)	GTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCT___GCAATTTAT	out-of-frame	GTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL_VC073	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	3	65	30	medium	.	.	duplicates(2)	ATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___CgGGGAGACAGGAAAAGCGGTCCTGTTTGGGAACAGTAAAAGCAGG	out-of-frame	ILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL_VC073	MTAP	CDKN2A	+/+	-/+	9:21818202	9:21994151	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	0	5	1	65	18	medium	.	.	duplicates(1),mismappers(1)	GGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCCGTGAGCCGCGGGATGTGAACCACGAAAACCCTCACTCGCGGCGGGCCGCACGCGCGCCGAATCCGGAGGGTCACCAAGAACCTGCGCACCATGTTCTCGCCGCCTCCAGGGCCGAGCTCGGCAGCCGCTGCGCCGCCCTTTGGCACCAGAG___ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___CCATCTCAGCCTCAGCCTGGTACTGAACGCTTG	out-of-frame	VNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|krllp*	.
TALL_VC073	ZNF852	YIF1B	-/-	-/-	3:44502542	19:38309643	splice-site	splice-site	translocation	upstream	downstream	2	0	0	29	158	medium	.	.	.	CGGCTGTGCGTGCGAGAGTGGCAG___GATACTGTGGCGTATGAGGACCTGTCTGAGGACTATACTCAGAAGAAATGGAAAGGTCTCGCACTCAGTCAGAGAGCCCTGCACTGGAACATGATGCTGGAAAATGACCGTAGCATGGCTTCTTTGG|CCTCGAAGCGGAGGATCCCTGTGTCCCAGCCGGGCATGGCCGACCCCCACCAGCTTTTCGATGACACAAGTTCAGC	in-frame	DTVAYEDLSEDYTQKKWKGLALSQRALHWNMMLENDRSMASL|aSKRRIPVSQPGMADPHQLFDDTSS	.
TALL_VC073	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	9	0	0	43	55	low	.	.	duplicates(3),low_entropy(2),mismappers(14),mismatches(5)	GCAGAGTAAAAGGTCTCTaCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGAC	.	.	.
TALL_VC073	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	1	229	55	low	.	.	low_entropy(3),mismappers(1),mismatches(8)	CTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTG	.	.	.
TALL_VC073	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	3	53	55	low	.	.	low_entropy(1),mismappers(3),mismatches(5)	CATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCA...CACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATG	.	.	.
TALL_VC073	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	2	226	55	low	.	.	low_entropy(1),mismappers(2),mismatches(5)	ATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAG	.	.	.
TALL_VC073	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	2	3	1	24	7	low	.	.	duplicates(1)	GAAACATCCATTTTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAAC	.	.	.
TALL_VC073	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	1	0	66	279	low	.	.	duplicates(2)	GCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC073	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	9	279	low	.	.	read_through(5)	CAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTG	out-of-frame	QKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC073	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510496	7:22232433	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	6	8930	6	low	.	.	mismatches(9)	GGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAAcGGTCTCAGAACTGTTTGTTTCAATTGGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAAC...|...TGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTG	.	.	.
TALL_VC073	PTP4A1	EYS	+/+	-/+	6:63582775	6:63736755	3'UTR	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	5	324	5	low	.	.	low_entropy(1),mismappers(2),mismatches(6)	AGAGGCTAGCTACCTAGGCTTGTCTATAGCAACCATAATGTTGATGTAAGTAATGCGGTTACTGAATCATAAGAAAATGCCATCTCTTTTTAGTTGAAGGAAAACTCTGGAAGTAGGTGCCATTGG...|...TATTTCATTGAGCAGTGGTTTGcAGTTCTCCTTGAAGAGGTCCTTCACGTCCCTTGTAAGTaGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTTGGC	.	.	.
TALL_VC073	DNAH11	EEF1A1P6	+/+	-/+	7:21711841	7:22510536	CDS	3'UTR	deletion/5'-5'	downstream	upstream	0	0	5	1	3754	low	.	.	low_entropy(1),mismatches(11)	TGTGAACCCAC...|...CAATTGAAACAAACAGTTCTGAGACCgTTCTTCCACCACTGATTAAGAGTGGGGTGGCAGGTATTAGGGATAATATTCATTTAGCCTTCTGAGCTTTCTGGGCAGACTTGGTGACCTTGCCAGCTCCAGCAGCCTTCTTGTCCACTGCTTTGATGACACCCACCGCAACTGTCTGTCTCATATCACGAACAGCAAAGCGACCCAAAGGTGGATAGTCTGAGAAGCTCTCAACACACATGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATT	.	.	.
TALL_VC073	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	11	89	low	.	.	duplicates(1)	CTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGCAAGAGAGAAAGTGAATACGCTGATATAAGAAGCAAG___AAACCTTCCTTCCTTCCAGATGTGTGTCAGTAGAATTACAGAGTGTCCACGGAAACAGCTCATGCCCTAGTGTACAGTGGTGCAGCCAATGAGTGACCTGAAGTCTA	.	.	.
TALL_VC073	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	4	0	33	10	low	.	.	low_entropy(3)	TCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCC	.	.	.
TALL_VC073	EEF1A1P6	FAM126A	-/.	-/.	7:22512011	7:22915227	5'UTR	intron	deletion	downstream	upstream	0	0	4	94	4	low	.	.	low_entropy(1),mismappers(1),mismatches(11)	.	.	.	.
TALL_VC073	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853422	18:48116560	exon	intron	deletion/read-through	downstream	upstream	0	0	4	22	1	low	.	.	mismappers(1),mismatches(5)	...CCTTGACgTTGACAATCGAGTAGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCAC|...GGGGTCCGCCA	.	.	.
TALL_VC073	GMDS-AS1	WRNIP1	+/.	+/.	6:2417028	6:2774840	intron	intron	deletion/read-through	downstream	upstream	0	0	3	2	98	low	.	.	.	.	.	.	.
TALL_VC073	CNTN4	CRBN	+/.	-/.	3:2671236	3:3152239	intron	intron	deletion/5'-5'	downstream	upstream	0	0	2	1	66	low	.	.	mismappers(1),mismatches(2)	.	.	.	.
TALL_VC073	ITFG2	TSPAN9	+/+	+/+	12:2842988	12:3142614	intron	intron	deletion/read-through	downstream	upstream	0	0	2	7	1	low	.	.	mismappers(1)	TTTTTTAATCTAAGTCCTGGTGGCTATATTCAAAGTTCATGCCCTCTTATCCAAGCCTAGCAGAGATAGAGATGAACTGTATCCCACCTTCCTTGTCATAGCCGTTCATGCCTTCAGAGATCTTTC...|...CACGTTCCC	.	.	.
TALL_VC073	RALYL	E2F5	+/.	+/.	8:84871958	8:85178421	intron	intron	deletion/read-through	downstream	upstream	0	0	2	0	42	low	.	.	low_entropy(2),mismappers(1),mismatches(6)	.	.	.	.
TALL_VC073	KCNH8	RAB5A	+/.	+/.	3:19445056	3:19952745	intron	intron	deletion	downstream	upstream	0	0	2	0	67	low	.	.	mismappers(1)	.	.	.	.
TALL_VC073	N4BP2	HGSNAT	+/+	+/+	4:40073551	8:43182145	splice-site	splice-site	translocation	downstream	upstream	0	2	0	60	57	low	.	.	.	TAATGAGCATGTTGACAGCATCGATGCTAGACAGACA|TGTCTTGGGACAAGGTGCGCATTCCTGGTGTGCTGCAGCGATTGGGAGTGACATACTTTGTGGTTGCTGTGTTGGAGCTCCTCTTTGCTAAACCTGTGCCTGAACATTGTGCCTCG___GAGAGGAGCTGCCTTTCTCTTCGAGACATCACGTCCAGCTGGCCCCAGTGGCTGCTCATCC	.	.	.
TALL_VC073	PSPC1	ZMYM2	-/-	+/+	13:19741565	13:19993063	splice-site	splice-site	inversion	upstream	upstream	1	0	1	217	184	low	.	.	.	TTGAATTTGAGTATGCATCTCGATGGAAGGCTCTTGATGAAATGGAAAAGCAGCAGCGTGAGCAGGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGAGGCAGAAATGGAAGCAGCTAGGC...GCTAATGAGGCAAG___ATCTAATGAGGCGTCAAGAAGAACTCAGACGCTTGGAAGAACTCAGAAACCAAGAGTTGCAAAAACGGAAGCAAATACAACTAAG|GTTCTTTGGCATGGACACAAGTTCAG	in-frame	LMRQDLMRRQEELRRLEELRNQELQKRKQIQLr|ffgMDTSS	.
TALL_VC073	AKT1	NPEPL1	-/-	+/+	14:104792598	20:58693737	splice-site	splice-site	translocation	upstream	upstream	0	1	0	130	209	low	.	.	.	GTGAGCGTCGCGGGAGCCTCGGGCACCATGAGCGgCGTGGCTATTGTGAAGGAGGGTTGGCTGCACAAACGAG|CTCTGGCAGGCTGCCCTGAGCACGCTCAACCCCAACCCCACGGACAGCTGTCC...CCACTTCATCACGCGGCTGGTGCGGACCTGCCTGCCGCCCGGAGCGCATCGCTGCATTGTG___ATGGTCTGCGAGCAGCCGGAGGTCTTTGCTTCCGCCTGTGCCCTGGCCCGGGCCTTCCCGCTGTT	out-of-frame	MSgVAIVKEGWLHKR|alagcpehaqpqphgql	.
TALL_VC073	ZNF316	USP42	+/+	+/+	7:6644593	7:6153756	splice-site	splice-site	duplication	downstream	upstream	1	0	0	133	115	low	.	.	.	CTGGAAGCAGACCAGCGGGGCCTCTACCAGGAAGTCATGCAGGAGAACTATGGGATTCTCGTGTCCTTGG___GATACCCAATTCCCAAGCCCGATCTGATCTTCCGGCTGGAACAAGGGGAAGAACCTTGGGTCCCAGATAGTCCCCGACCTGAGGAAGGAGACATCGTCACTGGCGTCTACACAG|TGCACCTGGAGCAGAGAGGGGCCCTCCCGAGGACCGCGACGCCGAGCCTCAGCCTGGCAGCCCCG	out-of-frame	LEADQRGLYQEVMQENYGILVSLGYPIPKPDLIFRLEQGEEPWVPDSPRPEEGDIVTGVYT|vhleqrgalprtatpslslaa	.
TALL_VC073	JADE2	TCF7	+/+	+/+	5:134526011	5:134138059	splice-site	splice-site	duplication	downstream	upstream	1	0	0	23	166	low	.	.	.	GGGGCCTGGGACGCCGCGGGCCCGGCCGCCTCCCTCGCCGCGACCCCGGATGGATGCGCGCCCCCCGCCCTCCCGCGCCGGCCCCAGGAGCTCCCGGCTTCGGGAGCATCCTTCCCGCGCCGGTCCCTGCAGCGGCGCGTAGtCGAGGGCAGCGCCCGTCAGGGGGGCACCGCGGAGCAAG|CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTC	.	.	.
TALL_VC073	CAPN10	HDAC4	+/+	-/-	2:240589474	2:239102896	splice-site	splice-site	inversion	downstream	downstream	1	0	0	56	90	low	.	.	.	GGCGGGCCGGGGCGCGACGCCGGCGAGGGAGCTGTTCCGGGACGCCGCCTTCCCCGCCGCGGACTCCTCGCTCTTCTGCGACTTGTCTACGCCGCTGGCCCAGTTCCGCGAGGACATCACGTGG...GAAGGGCAGGTGAAGCAGGGGCTGCTGGGGGATTGCTGGTTCCTGTGTGCCTGCGCCGCGCTGCAGAAGAGCAGGCACCTCCTGGACCAG|TGCATCCGCGGACGCAAGGCCACCCTGGAGGAGC	in-frame	EGQVKQGLLGDCWFLCACAALQKSRHLLDQ|CIRGRKATLEE	.
TALL_VC073	CTDP1	NFATC1	+/+	+/+	18:79697988	18:79527528	splice-site	splice-site	duplication	downstream	upstream	1	0	0	65	11	low	.	.	.	AGCCACCCGGTTGTCATGAAAGGCCTGTGTGCTGAATGTGGCCAAGACCTCACCCA___GTTGCAGAGTAAGAACGGGAAGCAGCAGGTGCCGCTGTCCACGGCGACCGTGTCCATGGTGCACAGCGTG...ACTGCACCGAAACCGGAAGCTGGTGCTCATGGTGGACTTGGACCAGACGTTGATTCACACAACCGAGCAGCACTGTCAGCAGATGTCGAATAAA|TAAATGAAATAATACGAAATGACCTCTCCAGC	out-of-frame	LHRNRKLVLMVDLDQTLIHTTEQHCQQMSNK|*	.
TALL_VC073	ATP11B	HLA-DPB1	+/+	+/+	3:182848557	6:33080672	splice-site	splice-site	translocation	downstream	upstream	1	0	0	144	264	low	.	.	.	CCTGCTTCGTGGAGCCAGATTAAAAAACACAAAAGAAATTTTTG___GTGTTGCGGTATACACTGGAATGGAAACTAAGATGGCATTAAATTACAAGAGCAAATCACAGAAACGATCTGCAGTAGAAAA|AGAATTACCTTTTCCAGGGACGGCAGGAATGCTACGCGTTTAATGGGACACAGCGCTT	out-of-frame	LLRGARLKNTKEIFGVAVYTGMETKMALNYKSKSQKRSAVEk|elpfpgtagmlrv*	.
TALL_VC073	KHDC1	CDKAL1	-/-	+/+	6:73309552	6:20649293	splice-site	splice-site	inversion	upstream	upstream	1	0	0	42	44	low	.	.	.	CATGTGGTCCCGTGCCCACTTCTCGCGGTGGCGCGTTAATCCACCTAGACTGTGCATTGGTCCAGTCTGGGTTGACCCCGACCCGAAGTGGCCCTTTCCTTCGCGTCCTGAACTTCGCTTCTCC...TTCTCCAGACCCTTGCGATGCTCCTGATCGGGACAGTGTCTTTCCACCTTTGGATCCGCAGAAATCGAG|AAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCC	in-frame	LQTLAMLLIGTVSFHLWIRRNR|eNASDADLWLLNSCTVKN	.
TALL_VC073	SCAF4	PIP5K1A	-/-	+/+	21:31731663	1:151246920	splice-site	splice-site	translocation	upstream	upstream	1	0	0	140	147	low	.	.	.	CAGCCTCTTCCTGCCCGGGCCTCGGACTCCGCCGCTCGTCGCCTCCCCCCGGCCACCAGGCCCGGCTGGTTTCCCAGCCCCGCTCCGCCGCGGCGCGAGGTCTATGTGACCGGCGGGCCCGGAGCAGCCGCCGCCGCAGCGCGAACATGGACGCCGTCAACGtCTTCAACCAGGAG|TACAACCTTGGAAAAGCTTGAAGTTGCAGA	out-of-frame	MDAVNvFNQE|ynlgka*	.
TALL_VC073	SMAP2	PABPC4	+/+	-/-	1:40374223	1:39572586	splice-site	splice-site	inversion	downstream	downstream	0	1	0	157	277	low	.	.	.	GTTTTGTGCAGATTGCCAGTCTAAAG|CTGAGCGGGCTTTGGACACCATGAACTTTGATGTGATTAAGGGAAAGCCAATCCGCATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGACAAATCTATAGATAAC	in-frame	FCADCQSK|aERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSID	.
TALL_VC073	GPBP1	NEK1	+/+	-/-	5:57231321	4:169590809	splice-site	splice-site	translocation	downstream	downstream	1	0	0	285	31	low	.	.	.	GCAGTATTTTCCATGCAGGAAAAAGCCAAGGACTACATGAAAACAACATACCTGACAATGAAACCGGGAGGAAAGAAGACAAGAGAGAACGCAAACAGTTTGAAGCTGAGGATTTT|ATTTTGGACTGGTTTGTACAGATATGTTTGGCCCTGAAACATGTACATGATAGAAAAATTCTTCATCGAGACATTAAATCTCAG	in-frame	SIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAEDF|ILDWFVQICLALKHVHDRKILHRDIKS	.
TALL_VC073	KDM5A	EIF3E	-/-	-/-	12:362963	8:108241913	splice-site	splice-site	translocation	upstream	downstream	1	0	0	111	886	low	.	.	.	CTGGGTCTCTTTTGAAGTCACATTATGAAAGAATTCTCTACCCATATGAGCTTTTCCAGTCTGGTGTGAGCCTTATG___GGTGTGCAGATGCCTAATTTAGATCTTAAAGAAAAAGTGGAGCCTGAGGTTCTCAGCACTGATACCCAAACTTCCCCAGAGCCAGGCACAAGGATGAACATTCTGCCGAAGAGAACAAGACGTGTGAAGACTCAG|ATATATAATGAAAAGGAATTATTACAAGGTAAATTGGAC	in-frame	GSLLKSHYERILYPYELFQSGVSLMGVQMPNLDLKEKVEPEVLSTDTQTSPEPGTRMNILPKRTRRVKTQ|IYNEKELLQGKL	.
TALL_VC073	AC005562.1	GOSR1	+/+	+/+	17:30610942	17:30510880	splice-site	splice-site	duplication	downstream	upstream	0	1	0	50	109	low	.	.	duplicates(1)	ATTTATGCAAACTTGGGCCAAAGGACAGTTAGAAGACAGTAG|CTCAGATCGTCTGATAGAAGAGACAATAAG___CATTGCTATGGCAACAAAAGAAAATATGACTTCACAGAGAGGAATGTTGAAGTCAATTCACAGCAAAATGAACACTTTGGCCA___ATCGTTTTCCTGCTGTAAACAGCtTGATCCAGAGGATCAACCTGAGGAAGCGGCGGGACTCGCTCATCCTAGGGGGTGTTATTGGGATCTGTA	.	.	.
TALL_VC073	ATP5B	EIF4A2	-/-	+/+	12:56643403	3:186786502	splice-site	splice-site	translocation	upstream	upstream	0	1	0	2357	3691	low	.	.	.	ATTTATACCATGAAATGATTGAATCTGGTGTTATCAACTTAAAAGATGCCACCTCTAAG|GTTGTGTTGCTTTCTGCCACAATGCCAACTGATGTGTTGGAAGTGACCAAAAAATTCATGAG...ATTTTACCTTCTTGTATAAGCACTGTGCTAAAATTGCAGACACTAGGACCATGTCTTGGTTTTTGCAATAATGCTAGCAGAGTACACACAAGAAGAAAAGTAACAGCACTAGATTGTAAAGACgGG	in-frame	LYHEMIESGVINLKDATSK|VVLLSATMPTDVLEVTKKFM	.
TALL_VC073	EIF4A2	ATP5B	+/+	-/-	3:186787584	12:56643587	splice-site	splice-site	translocation	downstream	downstream	0	1	0	4704	2331	low	.	.	.	GGGAATTCCGGTCAGGGTCAAGTCGTGTTCTGATCACTACTGACTTGTTG|GGCTTTTTGGTGGTGCTGGAGTTGGCAAGACTGTACTGATCATGGAGTTAATCAACAATGTCGCCAAAGCCCATGGTGGTTACTCTGTGTTgGCTGGTGTTGGTGAGAGGACCCGTGAAGGCAATGATTTAgACCATGAAATGATTGAATCTGGTGTTATCAACTTAAAA	out-of-frame	EFRSGSSRVLITTDLL|gflvvlelarly*	.
TALL_VC073	EIF3H	RAD21	-/-	-/-	8:116726016	8:116866761	splice-site	splice-site	duplication	upstream	downstream	0	1	0	1126	148	low	.	.	.	CTTGAAATTACCAACTGCTTTCCTTTCCCTCAGCACACgGAGGATGATGCTGACTTTGATGAAG|GTTTTCTTCTGTTTTCATAGCCAGCCAGAACAATGTTCTACGCACATTTTGTTCTCAGTAAAAGAGGGCCTCTGGCCAAAATTTGGCTAGCGGCCCATTGGGATAAGAAGCTAACCAAAGCCCATGTGTTCGAGTGTAATTTAGAGAGCAGCGTGGAGAGTATCATCTCACCAAAG___GTGAAA	out-of-frame	LEITNCFPFPQHTEDDADFDE|gfllfs*	.
TALL_VC073	HMGB2	SPCS3	-/-	+/+	4:173334274	4:176322168	splice-site	splice-site	inversion	upstream	upstream	0	1	0	4966	351	low	.	.	.	CTCCGTTGGGTCCGGCCGCTCTGCGGGACTCTGAGGAAAAGCTCGCACC|AGAAAAAATGTAGAAGATTTCACTGGACCTAGAGAAAGAAGTGATCTGGGATTTATCACATTTGATATAACTGCTG___ATCTAGAGAATATATTTGATTGGAATGTTAAGCAGTTGTTTCTTTATTTATCA	.	.	.
TALL_VC075	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	26	58	5	228	130	high	.	.	duplicates(8),low_entropy(6),mismappers(5),mismatches(6)	G___...CCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGG...___...CCG...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAAC	.	.	.
TALL_VC075	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	5	10	15	149	131	high	.	.	duplicates(2),low_entropy(2),mismappers(15),mismatches(11)	AGCGTAttaTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGG	.	.	.
TALL_VC075	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	10	6	11	214	131	high	.	.	duplicates(4),low_entropy(3),mismappers(11),mismatches(9)	CAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTT...CAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGG	.	.	.
TALL_VC075	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	24	1	0	148	131	high	.	.	duplicates(6),low_entropy(7),mismappers(41),mismatches(16)	GCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCC...CACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCCTGC	.	.	.
TALL_VC075	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	9	0	8	340	131	medium	.	.	duplicates(3),low_entropy(5),mismappers(8),mismatches(9)	GACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAG	.	.	.
TALL_VC075	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	8	17	1	87	48	high	.	.	mismatches(1)	ATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTC...___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAgAgTTAAAAA	out-of-frame	SDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL_VC075	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	8	3	38	64	high	.	.	duplicates(2),low_entropy(1),mismappers(3),mismatches(4)	G___...?TTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCA	.	.	.
TALL_VC075	RP11-98J23.2	RP11-497H16.7	+/+	+/+	5:69920867	5:70473448	exon	splice-site	deletion	downstream	upstream	3	0	5	126	7	high	.	.	mismatches(1)	GGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAAGGCTTCACCAG___GATCCACCTCTGATGTTCAGTGAAGAGGACCGGAAAAGTCTGCTAGAGCAGTACCATCTGGGTCTGGATCAAAAACGCAGAAAATACGTGGTTGGAGAGCTCATCTGGAATTTTGCCGATTTCATGACTAACCAGT|ATGTGAATTTCTTCGGAGTAAGAAATCCTCAGAGGAAATTACCCAGTATATTCAAAGCTACAAGGGATTTGTTGACATAACG___GGAGAACATTTTGTGAATTCCTGGGTCCAGAGAGAATTACCTATGGCATCAG___CTTATTGCAATGACAGCATCTTTGCTTACGAAGAACTACGGCTGGACTCTTTTAAGGACTGGCC	.	.	.
TALL_VC075	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	6	4	0	176	399	medium	.	.	.	GGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAG	out-of-frame	ARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC075	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	15	399	low	.	.	read_through(5)	CCAGGAAATTAGCAAGGGAAAGAtGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTG	out-of-frame	QEISKGKmKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC075	ATAD2	FXR1	-/+	+/+	8:123382633	3:180951373	intron	CDS	translocation/3'-3'	downstream	upstream	2	4	3	10	385	medium	.	.	.	CTTACACCTTGGGTGGTGTATTATTTTTAAGACAAATATTTACATCTTAGATCAGTGTAGTGTATAAGACTTTCATTTTCCAAGGAATATTTAAATGGAATCTGTTTCCAAATTATCAACTTTCATATGTACTTTTTCTTAAAACTGATCAGCCTGAAAAGGCACAAGCCATCCCATTCATTTGCCCTTCTCCATTTTAAAAAAGAAAGTTCT|ACACATGGTAGTAACATCCAGCAAGCTAGGAAGGTTCCTGGAGTTACCGCCATTGAGCTAGATGAAGATACTGGAACATTCAGAATCTACGGAGAG___AGTGCTGATGCTGTAAAAAAGGCTAGAGGTTTCTTGGAATTTGTGGAGGATTTTATTCAGGTTCCTAGGAATCTCGTTG___GAAAAG	.	.	.
TALL_VC075	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	6	2	0	780	69	medium	.	.	duplicates(1),mismappers(2),mismatches(1)	CTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCAC	.	.	.
TALL_VC075	MTAP	UBA52P6	+/+	+/+	9:21818202	9:22012128	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	5	2	87	13	medium	.	.	duplicates(1),low_entropy(2)	CTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|CGAGGCAGCCGAGCTGCAGACACAGAGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACAAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCC	out-of-frame	LILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDs|eaaelqtqrcrsl*	.
TALL_VC075	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	4	0	11	64	medium	.	.	low_entropy(2),mismatches(1)	CGCgCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAG...GGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGC	.	.	.
TALL_VC075	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	4	0	1	37	37	medium	.	.	duplicates(1)	.	.	.	.
TALL_VC075	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	1	3	0	31	28	medium	.	.	.	CAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAcTATGCCCCAG___GATGcCCGAGCGaCCGCCGAGCGAGGCGGC	.	.	.
TALL_VC075	EEF1A1P6	DNAH11	-/-	+/-	7:22510726	7:21821232	exon	intron	deletion/5'-5'	upstream	downstream	0	0	8	323	0	low	.	.	low_entropy(1),mismappers(1),mismatches(16)	AAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTT...GAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCT...|...TGTCTAGTAAGA	.	.	.
TALL_VC075	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853395	18:48032207	exon	intron	deletion/read-through	downstream	upstream	0	0	7	84	1	low	.	.	duplicates(2),low_entropy(1),mismatches(17)	...CCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGGGT|...AGGTTgcAGTGATTCTCCTGCCTCAGCCTCTCGA	.	.	.
TALL_VC075	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	135	146	low	.	.	mismatches(1)	GGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTT	out-of-frame	GVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC075	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	234	146	low	.	.	duplicates(1),mismatches(1)	AATggGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAAC	in-frame	wVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLM	.
TALL_VC075	RP5-857K21.6	AGRN	+/+	+/+	1:632653	1:1021337	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	6	5696	1	low	.	.	low_entropy(4),mismappers(1),mismatches(29)	CCACATGAAAcATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATgATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGcTTT...|...GGTCATCTGC	.	.	.
TALL_VC075	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	4	0	71	13	low	.	.	.	ACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAG	.	.	.
TALL_VC075	ZNF445	LINC00694	-/-	-/-	3:44455121	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	36	13	low	.	.	.	GGGGAGCTCCGGGTTTGGGTGCAGCTTCATAACCCTGAGAGTGGCGAGGAGGCTGTGGCCTTGCTGGAGGAGCTGCAGAGGGACCTTGATGGGACATCCTGGAGG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAG	out-of-frame	GELRVWVQLHNPESGEEAVALLEELQRDLDGTSWR|vclevsldrdrnl*	.
TALL_VC075	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510697	7:22290522	exon	intron	deletion/read-through	upstream	downstream	0	0	5	1122	1	low	.	.	low_entropy(4),mismappers(1),mismatches(16)	GGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGT...|...CCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACtGCGCCCGGCtTT	.	.	.
TALL_VC075	MTND4P12	AC005355.1	-/-	+/-	5:134927074	5:134475386	exon	intron	deletion/5'-5'	upstream	downstream	0	0	5	385	1	low	.	.	low_entropy(2),mismappers(1),mismatches(9)	ATAGCCTACCCCTTCCTTGTACTATCCCTaTGAGGCATAATTATAACAAGCTCCATCTGCCTaCGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATtCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAaTCGCCCACGGACTT...|...CCTTTTGTGTCTGG	.	.	.
TALL_VC075	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	intron	deletion/read-through	downstream	upstream	0	3	1	10	8	low	.	.	.	TGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCgCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCTCTCTTCTTATGGCTCTGGACACACTGCTGAACTCTGAC	in-frame	CLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEENITTENSCSLLMALDTLLNS	.
TALL_VC075	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	2	2	0	269	60	low	.	.	.	CCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCC...GCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATGGGC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaql	.
TALL_VC075	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	5	7	low	.	.	.	CCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTG	out-of-frame	RTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpsea	.
TALL_VC075	HNRNPA1P7	KLHL14	-/-	-/-	18:32413109	18:32683717	exon	intron	deletion/read-through	downstream	upstream	0	0	3	87	2	low	.	.	low_entropy(1),mismatches(3)	...TTGAAACAACTGATGAGAGCCTGgGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCAGCTATGAATGCAAGGCCACACAAGGTGGATGGAAGAGTTGTGGAACCAAAGAGAGCTGTCTC|...ACTTTACACTCTG	.	.	.
TALL_VC075	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	0	3	0	19	4	low	.	.	.	CCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAACTGCAG	.	.	.
TALL_VC075	STIL	TAL1(1104),STIL(16815)	-/-	./-	1:47313847	1:47233324	intron	intergenic	deletion/read-through	upstream	downstream	1	2	0	31	17	low	.	.	duplicates(1)	CTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG___TGGGTTCCGCCCTCCAGGAGCCTGGAGCAGATGACGAGAAGGGGAGCTAGTGGGAGAAATTAAGCAGTCCATGAAATCCTTGGGTATCATCTGAGCTAAG|AATGAACCCAGAGACCCTCCGTGGGCTGAGCGCATCATCCAGCTGGCACTGAACTCAGATTTCTACCCCACAGTAAAGACCCTGGTCTCTGCAATGAGTTGAGCCCAGGTCCCTTTCCCTGGCTAGGTTTTGGCTGCCCCTCTTCATCAGCTGAGCCGCAGAGAAGACTCCGTGTCAAATTTCCTTCCAAG	.	.	.
TALL_VC075	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	1	0	45	9	low	.	.	low_entropy(3)	CCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAG	.	.	.
TALL_VC075	EEF1A1P13	TRIO	-/-	+/-	5:14652278	5:14528008	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	98	1	low	.	.	low_entropy(5),mismappers(1),mismatches(16)	GGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCC...|...CAGCCTGGCCAACATAGTGAAACCCTGTCTCTACTAAAAATAcAAAAAA	.	.	.
TALL_VC075	EEF1A1P13	DNAH5	-/-	-/-	5:14652280	5:13942870	exon	intron	deletion	upstream	downstream	0	0	3	98	0	low	.	.	low_entropy(1),mismatches(2)	GTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCAT...|...GACCGTCG	.	.	.
TALL_VC075	RP11-54O7.1	RP11-206L10.1(5160),RP11-206L10.3(8506)	+/+	./+	1:913191	1:733307	exon	intergenic	duplication	downstream	upstream	0	3	0	113	513	low	.	.	.	GGGAGGAGATGCCCCGGGCAGGGGCTTGGCGGGGTCTGGCACCAAACTTCCCAAAGCAGCTGCCTCTGTGAACTGTGC|CATAATGTAGAATCAGTGGGCGTGTTAAGCTTGTTTTCCTGCAACTGG...GCTGaCACCCCTCTGGAATCCACGTATACGAAAATTCCAAATGTTAGTTGGGCATAGTGGCAAGCACCTGTAGTCTCAGCCACGTGGGAGGTTGAGGTGGGAGGATCGCTTCAGCCTGGAAGGTTGAGGCTGCAGTCAGCTGCGATAGCACTACTACACTCCAGCCTTGGACAACAGAGGGAGACC___TGAGAAA	.	.	.
TALL_VC075	NR3C1	ARHGAP26	-/-	+/-	5:143279619	5:142986265	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	94	1	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	GCAGAATCTCATAGGTTGCCAATAATACACTAATTCCTTTCTATCCTACAACAAGAGTTTATTTCCAAATAAAATGAGGACATG[t]TTTTTGTTTTCTTTGAATGCTTTTTGAATGTTATTTGTTAT...|...CATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTtACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTGgAGAGGATGTGaAGAAATA	.	.	.
TALL_VC075	DNAH11	STEAP1B	+/.	-/.	7:21864956	7:22510429	intron	intron	deletion/5'-5'	downstream	upstream	0	0	2	1	13121	low	.	.	low_entropy(1),mismappers(1),mismatches(17)	.	.	.	.
TALL_VC075	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	1	0	55	6	low	.	.	low_entropy(1),mismappers(1)	GTtGaCTTCACCtGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTC...CTCTAGGGGAGCGTCTTTCTTTGCCCTTCCAGCTTCTAGAAGCTGCCCAAATTCTGTGGTTTGGGGCCTCCTTTCAAAACCAGCAATGGCCAATCAGTCTTACATCACTCAAACACTTGAGTGTTC...ATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACC	out-of-frame	SFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC075	AC133644.2	RGPD2	-/-	-/-	2:87455823	2:87825243	exon	intron	deletion/read-through	downstream	upstream	0	0	2	13	221	low	.	.	mismappers(1),mismatches(1)	...ACACTAAAGGAC|...ATGACTAATCaAACTAACCTCAAAACAAATGATAGCCATACACAACACTAAAGGaCGAACCTGA	.	.	.
TALL_VC075	GHR	ZNF131	+/.	+/.	5:42644151	5:43076672	intron	intron	deletion	downstream	upstream	0	0	2	0	30	low	.	.	low_entropy(1),mismappers(2),mismatches(7)	.	.	.	.
TALL_VC075	RPL14P1	RP11-415I12.3	+/+	-/+	12:62965749	12:63627354	exon	intron	deletion/5'-5'	downstream	upstream	0	0	2	122	1	low	.	.	duplicates(1),mismappers(1),mismatches(1)	ATTTTGATCGTTTTAAAGTTATGAAGGCAAAGAAAAtGAGGAACAGAATAATCAAGAATGAAGTTAAGAAGCTTCAAAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAA...|...TTTTtTTcTtTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCG	.	.	.
TALL_VC075	RGPD2	LINC00152	-/-	+/-	2:87788730	2:87571978	CDS	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	380	0	low	.	.	mismappers(1),mismatches(4)	AGTAAAGGCCATTACG___AAACTAAATAGCAGTAAGTCAGCATCCCGTCATCGTTGGCCCACAGAGAATTATGGACCAGACTCGGTGCCTGATGGATATCAGGGGTCACAGACATTTCATGGGGCTCC...|...CGCTGCCCA	.	.	.
TALL_VC075	GOLGA8A	RYR3	-/-	+/-	15:34382992	15:33601138	CDS	intron	deletion/5'-5'	upstream	downstream	0	0	2	745	0	low	.	.	mismappers(1),mismatches(1)	GCATGATACGCATCGGGTAGAGGAGCTGGAGAGGAGCTTGTCCAGACTCAAAAACCAGATGG___CTGAGCCACTGCCCCCGGATGCCCCAGCAGTGTCCTCTGAGGTGGAGCTGCAAGACCTGAGG...|...GCTCTATTAC	.	.	.
TALL_VC075	BAZ1A	MAFG	-/-	-/-	14:34874492	17:81923214	splice-site	splice-site	translocation	upstream	downstream	2	0	0	365	20	low	.	.	duplicates(1)	GGCGAGCCCGCGGGCGGACGGGAGATGCCGCTGCTACACCGAAAGCCGTTTGTGAGACAGAAGCCGCCCGCGGACCTGCGGCCCGACGAGGAAGTTTTCTACTGTAAAGTCACCAACGAGATCTTCCGCCACTACGA|AGAGCGCCTGCTCGCTGTGCCCCC	out-of-frame	MPLLHRKPFVRQKPPADLRPDEEVFYCKVTNEIFRHYe|erllavp	.
TALL_VC075	GNAQ	GKAP1	-/-	-/-	9:77922161	9:83753359	splice-site	splice-site	duplication	upstream	downstream	0	1	1	316	143	low	.	.	.	ATCAGAACATCTTCACGGCCATGCAGGCCATGATCAGAGCCATGGACACACTCAAGATCCCATACAAGTATGAGCACAATAAG|GAAGTGGTTCTGAAAGATGGAAGAATTGAAAGACTAAAGTTAGAGCTTGAAAGGAAAGATGCTGAAATCCAGAAGCTGAAAAATGTAATCACTCAATGGGAG___GCAAAGTATAAGGAAGTAAAG	in-frame	QNIFTAMQAMIRAMDTLKIPYKYEHNK|EVVLKDGRIERLKLELERKDAEIQKLKNVITQWEAKYKEV	.
TALL_VC075	ZNF512	ZFR	+/+	-/-	2:27583142	5:32364275	splice-site	splice-site	translocation	downstream	downstream	0	1	0	63	211	low	.	.	.	GAGGGAGTGATGTCTTCCAGACTCGGTGCTGTACCCGCC|GCTATGGAGTTACTAGTAGAGAAAGCAATCAGCAGTGCTTCTAGCCCTCAGAGCCCTGGGGATGCACTGAGAAGAGTTTTTGAATGCATTTCTTCAGGGATTATTCTTAAAG___GTAGTCCTGG	in-frame	MSSRLGAVPA|AMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSP	.
TALL_VC075	RP11-158I13.2	ZFR	+/+	-/-	2:27583142	5:32364275	splice-site	splice-site	translocation	downstream	downstream	0	1	0	63	211	low	.	.	.	GAGGGAGTGATGTCTTCCAGACTCGGTGCTGTACCCGCC|GCTATGGAGTTACTAGTAGAGAAAGCAATCAGCAGTGCTTCTAGCCCTCAGAGCCCTGGGGATGCACTGAGAAGAGTTTTTGAATGCATTTCTTCAGGGATTATTCTTAAAG___GTAGTCCTGG	.	.	.
TALL_VC075	YARS2	DNM1L	-/-	+/+	12:32747076	12:32722427	splice-site	splice-site	inversion	upstream	upstream	0	1	0	52	74	low	.	.	.	TCTGAAGGGTTGGCTCCAGAACTTAGACCTTTGCTTATGCAAATCAGAAAAACAGAATGGACTAGGACTCAGT|GTTACTGATGCATCACATCAGAGATTGTTTACCAGAGTTGAAAACAAGAATAAATGTTCTAGCTGCTCAGTATCAGTCTCTTCTAAATAGCTACGGTGAACCCGTGGATGATAAAAGTGCTACTTTACTCCAACTTATTACCAAATTTGCCACAG	.	.	.
TALL_VC075	USP34	UTY	-/-	-/-	2:61228645	Y:13357969	splice-site	splice-site	translocation	upstream	downstream	1	0	0	107	68	low	.	.	duplicates(1)	AAACATCTTACAGAGTATTTTGCCTTCCTTTACGAATTTGCAAAAATGGGTGAAGAAGAG___AGCCAATTTTTGCTTTCATTGCAAGCTATATCTACAATGGTACATTTTTACATGGGAACAAAAGGACCTGAAAAT|AATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCC	in-frame	KHLTEYFAFLYEFAKMGEEESQFLLSLQAISTMVHFYMGTKGPEN|NGSDNWNGGQSLSHH	.
TALL_VC075	CHST11	CTCF	+/+	+/+	12:104457514	16:67571148	splice-site	splice-site	translocation	downstream	upstream	0	1	0	188	113	low	.	.	.	GGCCACTTGCTTGGGATCCTTTATCCTGGTCATCTTCTATTTCCAAA|AATGATTACGGACCTGAAGCCAAAGAACAAGATGCGCTAGTGGACAGATTGCTGACCAGGGGCTTGAGAGCTGGGTTCT...AACTGACTTTGCAGCCACGGAGAG___GCAGGGGAAATGGAAGGTGATGCAGTCGAAGCCATTGTGGAGGAGTCCGAAACTTTTATTAAAGGAAAGGAGAGAAAGACTTACCAGAGACGCCGGGAAGGG	out-of-frame	ATCLGSFILVIFYFQ|k*	.
TALL_VC075	NCOR1	TTC19	-/-	+/+	17:16098367	17:16025017	splice-site	splice-site	inversion	upstream	upstream	1	0	0	186	200	low	.	.	.	GAAGCCTCCAATGAAGAAGAAAATCCAGAAGACAGCGAAG___AATGTTTCCTATGGACTCAAAGCCTTCACTGTTAAACCCCACTGGATCTATACTCGTCTCATCTCCGTTAAAACCAAATCCACTGGATCTGCCACAGCTTCAGCATCGAGCTGCTGTTATCCCACCAATG|TGGAAGAGAAAGCCAATACCCACCTCCTCTTGGGCATGTGCTTAGACGCCTGTGCTCGCTACCTTCTGTTCTCC	out-of-frame	EASNEEENPEDSEECFLWTQSLHC*TPLDLYSSHLR*NQIHWICHSFSIELLLSHQc|gresqyppplghvlrrlcslpsvl	.
TALL_VC076	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	23	64	3	209	129	high	.	.	duplicates(7),low_entropy(3),mismappers(2),mismatches(6)	G___GCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATG...___...TCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAAC	.	.	.
TALL_VC076	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	11	11	4	57	72	high	.	.	duplicates(1),low_entropy(3),mismappers(1),mismatches(4)	CTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...TTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___...GAGTCGTCCCCCGTGTCCTCTC?GGCCACCAACC...___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCA	.	.	.
TALL_VC076	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	8	0	199	403	medium	.	.	duplicates(1)	GCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGC...TGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAGCTAATAATATAGAACAgAATGCTCAAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC076	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	26	403	low	.	.	read_through(7)	GAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCC	out-of-frame	KRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC076	SERF1B	SMN2	+/+	+/+	5:70041631	5:70065965	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	26	268	low	.	.	read_through(1)	AAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|CATGCTCTAAAG	out-of-frame	KTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSs|ml*	.
TALL_VC076	MTAP	CDKN2B-AS1	+/+	+/+	9:21802781	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	5	4	0	26	30	medium	.	.	duplicates(1)	CTGCTCACTCCCGCGCAGTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACAtATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGC	out-of-frame	MASGTTTTAVK|cpf*	.
TALL_VC076	MTAP	CDKN2B-AS1	+/+	+/+	9:21802781	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	26	15	medium	.	.	low_entropy(1)	CTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG|GACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCT___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCC	out-of-frame	MASGTTTTAVK|dylprhfkgfqerilvsml*	.
TALL_VC076	MTAP	UBA52P6	+/+	+/+	9:21802781	9:22012128	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	3	0	26	6	medium	.	.	.	GCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG|CGAGGCAGCCGAGCTGCAGACACAGAGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACAAGCAGCGTCTGAT	out-of-frame	MASGTTTTAVK|rgsraadtemqifvktltgktitlevepsdtienvsakiqdkegippdkqrl	.
TALL_VC076	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	3	0	398	27	medium	.	.	mismappers(1)	GGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTAC...GCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAAT	.	.	.
TALL_VC076	RP11-680G10.1(40371),AC092377.1(41603)	GSE1	./+	+/+	16:85399820	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	1	5	109	medium	.	.	.	CTCAGCACATGTTTATTGAGCACCTACTGTGTGCCAATCACTGCCGTAGGCGTGGGGGATGCCGCAGACAGTGAAACGGGCAAGGATACCTACACTTGGCGGGGTGCACATTCTGCTGAGTTtGGGGGAAGAATGGATTAGGAATCTGTGCTTCGCTCCTAGAAGAGCCCCTGGaAGGTG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCA	.	.	.
TALL_VC076	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	0	2	1	17	17	medium	.	.	.	.	.	.	.
TALL_VC076	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	0	5	4	35	37	low	.	.	mismappers(4),mismatches(1)	ACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAAC...CCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAG	.	.	.
TALL_VC076	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	3	143	37	low	.	.	low_entropy(1),mismappers(3)	GTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAAC	.	.	.
TALL_VC076	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	4	1	1	27	37	low	.	.	duplicates(1),mismappers(14),mismatches(1)	CTAAAGGAGATCCAGAATTCCACAG___...GTCTGTCTTCACCCTCCAGAGGATAGAGGACCTG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGG	.	.	.
TALL_VC076	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	4	59	37	low	.	.	duplicates(1),mismappers(4)	GGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAAC	.	.	.
TALL_VC076	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	8	0	44	21	low	.	.	low_entropy(2),mismappers(1),mismatches(1)	GCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGC	.	.	.
TALL_VC076	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	3	4	0	25	25	low	.	.	mismatches(1)	CAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAG	.	.	.
TALL_VC076	PTEN	MED6P1(134004),RP11-129G17.2(75302)	+/+	./+	10:87864624	10:88183827	exon	intergenic	deletion/read-through	downstream	upstream	2	2	3	304	184	low	.	.	duplicates(1),low_entropy(1),mismappers(2)	ATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCTGTATCCATTTCTGCGGCTGCTCCTCTTTACCTTTCTGTCACTCTCTTAGAACGTGGGAGTAGACGGATGCGAAAAT|TGATTGGTTCAGGAACGAGTAGATAATTCAAGATGGTTGGAATCAATGGCGATACTGAGACTTTTGCGGATCAACTAGAGAGAAGTCATAGTTTTCACTGCTCTATGGGACAGCTGAGAATGGTGCACCATTTTGCTGCAACTGTTTGAGTGCCTTCCAGAATGTAAAGTTAACACAGAGGAAAAAAGAGCTGAGAGAAGATTAG	out-of-frame	MTAIIKEIVSRNKRRYQEDGFDLDLTcihfcgcsslpfchslrtwe*tdaki|dwfrne*	.
TALL_VC076	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	4	0	1	163	139	low	.	.	.	TTTTAGTCTGTGCATTTTCCCATTTTTTTCAACAGGAATGTCTAGAGACATTATTCCTGTTTTGCCACTGTATTTTTGGTGAATGTGTAGTAAGTAACTGGCCTCTTTAGTATCACAAAGCTGGAT...AAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGA	.	.	.
TALL_VC076	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	3	0	17	17	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	GAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAG...AAGCTaTTTAAGCAGCTTCCAGACACGGAGCGCCaCgTTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGaGCCGACTCTACCTCTCTGAAAATTGGATCTaCTTCTACAGCAAC	.	.	.
TALL_VC076	EEF1A1P13	TRIO	-/-	+/-	5:14652172	5:14511866	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	5	25	1	low	.	.	mismappers(2),mismatches(12)	CTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCCACACGGCgCAcATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAA...|...GTGGATGCCCG	.	.	.
TALL_VC076	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510784	7:22321131	exon	intron	deletion/read-through	upstream	downstream	0	0	5	910	1	low	.	.	low_entropy(2),mismappers(1),mismatches(7)	CGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCC...|...TACATTTGAC	.	.	.
TALL_VC076	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	2	1	29	11	low	.	.	mismappers(2)	AG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCA	out-of-frame	GYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC076	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	2	0	17	6	low	.	.	duplicates(1),low_entropy(1),mismappers(1)	ATGGATCTTGGGTGTTCCTCCATGCAACTTGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___GTACCCTGACATGCCCACTGCTGCTGAT...GTGAATGCTTTAGATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GAAAACAAACAAtCTGATTTTAAAATGGCCAAAGGAC	out-of-frame	VNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRTQQLASIVA|gctgesklfwrcpka*	.
TALL_VC076	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	0	4	0	11	12	low	.	.	.	ATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCT	in-frame	FARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEENITTENSC	.
TALL_VC076	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	3	1	9	7	low	.	.	mismappers(1),mismatches(1)	GGAAgCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTgCAACAACCTAGTGTCAtTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGA...GCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCG	.	.	.
TALL_VC076	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	2	2	0	194	50	low	.	.	.	CGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccp	.
TALL_VC076	ITPR1	EDEM1	+/.	+/.	3:4842791	3:5194069	intron	intron	deletion/read-through	downstream	upstream	0	0	4	5	145	low	.	.	mismatches(3)	.	.	.	.
TALL_VC076	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	2	42	5	low	.	.	.	CCAGTACCGTCCTGGGCCTGGTGCAGAACATGCGTGCGTTTGGCGGGATCCTGGTG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTC...GCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCC	out-of-frame	AAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL_VC076	C21orf33	AP001056.1(6762),AP001057.1(18075)	+/+	./+	21:44140342	21:44183215	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	295	6	low	.	.	.	CAGGAATAGcCCCTGGaTGTGAGGCTGTCTGAGGAGGCCaTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG|CTCCTGCTCCATTCCCGTCTATTTCATCTGATGTCTCACCAGCTCCTGTTCCATCCCCGTCTATGTCATCTGACTTCTCACCAGCTCCTGTTCCATCCCCGTCTATTTCATCTGACATCTCACCAGCTCCTGTTCCATTCCCGTCTATTTCATCTGATGTCTCACCAGCTCCTGTTCCATCCCCGTCTATTTCATCTGATGTCTCACCAGCTCCTGTTCCATCCC	out-of-frame	giapgceav*gghlspgRSTFAVDGKDCKVNKEVERVLKEFHQAGKPIg|scsipvyfi*	.
TALL_VC076	RORC	AL450992.2	-/+	+/+	1:151826445	1:151850233	intron	splice-site	deletion/read-through/3'-3'	downstream	upstream	2	1	0	14	14	low	.	.	.	CCACCCGCCAGGGTAGTTCTGGCTGGGGAGCCAGAATGGAGCTCACACGAGCCTGAAGCCAAATTTCTACTCCTCCTACCCCCGAGGACCTTCCAAGCCTGACCCTCTTTGCCAGGTGACTTCAGGGACAGGGATGTTTTCAGAG|GAGCTCCAGCACCACCTCCAGCCTTCAGTGACTGTCTGGAGCAGGCATCCGGATGGAAGAGAAGGGGGACAACCATGAACTTGGTGACCCACG___CTACAAGGCCACCAGCTATGCAAAGCCAC	.	.	.
TALL_VC076	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	75	82	low	.	.	.	GATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCC	.	.	.
TALL_VC076	ERBB2IP	MAST4	+/+	+/+	5:66078778	5:66704004	3'UTR	intron	deletion	downstream	upstream	0	0	3	346	0	low	.	.	low_entropy(1),mismappers(2)	ATAATGGAACTTGTGGTTAGAGGGAAAGAACCACTGTACAGAATATAAAGGAGACTGTTGAATTCATACCATATAAAACTTGTTAGGTTTTTAAACATAGCAATCAAGGCTACA...|...GTGATTGCCA	.	.	.
TALL_VC076	RP11-286B14.1	EEF1A1P11	+/.	+/.	1:95693677	1:96448163	intron	exon	deletion	downstream	upstream	0	0	3	0	11	low	.	.	mismatches(1)	.	.	.	.
TALL_VC076	PTP4A1	EYS	+/+	-/+	6:63582873	6:64362102	3'UTR	intron	deletion/5'-5'	downstream	upstream	0	0	3	210	0	low	.	.	duplicates(1)	AAAACTCTGGAAGTAGGTGCCATTGGTCATTCTGCAGTGCACTGCAACCATTGTTTCCCCTAGTGCCCTCTTTTCCCTAGGGCATTGCTCTCCTATTCCCACGCCTTAACACAGCTCTATACCT...|...AGCTGGTGCTGCC	.	.	.
TALL_VC076	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	0	1	1	74	10	low	.	.	duplicates(1),mismappers(1)	ATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAACTGCAGCATATAGTATCAT	.	.	.
TALL_VC076	ANK1	SLC20A2	-/.	-/.	8:41784804	8:42463785	intron	intron	deletion	downstream	upstream	0	0	2	1	8	low	.	.	mismappers(1)	.	.	.	.
TALL_VC076	ABR	VPS53	-/-	-/-	17:1070060	17:635509	CDS	intron	deletion	upstream	downstream	0	0	2	66	3	low	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(1)	GATGCCCTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGACATCGACCCCCGCCGGACTGCAGTGACAACGCCCAAGGGGGAG___ACGCGACAGCTGGTGAAGGACGGCTTCCTGG...|...GAAGAAAACCTAGGCAtTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACcaAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTC	.	.	.
TALL_VC076	DMD	TAB3	-/-	-/-	X:31323353	X:30871728	intron	5'UTR	deletion	upstream	downstream	0	0	2	0	48	low	.	.	mismappers(1)	TTGTGACAGAG...|...GTTGAATTTTCACCAGTaGAAAAAgTGGAG___AggTCTAGACTACTGAAAAGAAGTTGCTTTCAGAGCTGGAGATGTGAATAAAATTTCTGTGCCAGGGTTGATAAACCATCTTGAG___GATTC	.	.	.
TALL_VC076	CHFR	ANKLE2	-/-	-/-	12:132836707	12:132755133	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	2	0	42	181	low	.	.	mismappers(1),mismatches(1)	CGCGGCACAAACAGGCGCCCCTTCCTCTGTCGCTCACTTTTCACGGTTGTCTCCTTCTGAGGCG|GTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGGATTGAAATGTGGACCCATTACATCAACTACAAGGTTCATTTTTGAGAAAAAATTGGCTCAGGCTTTACTGGAGCAAGGAGGAAGGCTGTCTTCTTTCTACtACCATGAGGCAGGTGTCACAGCTCTCAGCC	.	.	.
TALL_VC076	SUMF1	CRBN	-/-	-/-	3:3745062	3:3173610	intron	intron	deletion	upstream	downstream	0	0	2	2	14	low	.	.	mismappers(1)	AGGAAATATAC...|...AGGAAATCTGCGGTAGAGGCAGGAAATACATACAGGAAGCTCCCACCCCAGTACAGTGCTGCCAGTAAGCAGCAGAAATGATAAGTCATTT	.	.	.
TALL_VC076	RP11-114H23.1	KRR1	-/-	-/-	12:75758256	12:75511557	intron	CDS	deletion/read-through	upstream	downstream	0	0	2	1	248	low	.	.	low_entropy(1),mismappers(2),mismatches(2)	TTTTTGTATTTTTAGTAGAGACAGGGTTTCACTGTGTTAGCCAGGATGG...|...GAAAAAGTGAATTTCGTAACCAGAAGCCGAAGCCGGAGAACCAAG___ATGAATCAGAACTCCTTACGGTTCCTGATGGTTGGAAGGAgCCAGCTTTTTCCAAAGAGG	.	.	.
TALL_VC076	AC108004.3	ASPSCR1	-/-	+/+	17:413129	17:82009037	splice-site	splice-site	inversion	upstream	upstream	0	2	0	72	98	low	.	.	duplicates(1)	GTCATGAAAGGAGGAAGAAAGCGGCTGGCTCTTCAGGCTCTGACTCTGATGTTTATCTGCTGAGTAGATGAGCAG|CCCGTGGACCGGGAGCCCGTGGACCGGGAGCCGGTGGTGTGCCACCCCGACCTGGAGGAGCGGCTGCAGGCCTGGCCAGCGGAGCTGCCTGATGAGTTCTTTGAGCTGACGGTGGACGACGTGAGAAGACGCTTGGCCCAGCTCAAGAGTGAGCG___GAAG	.	.	.
TALL_VC076	RNASEH2B	DUT	+/+	+/+	13:50948068	15:48334417	splice-site	splice-site	translocation	downstream	upstream	1	0	1	1182	1212	low	.	.	.	TTAAAAACCAATAATGTGAATGTCAGTTCCCGGGTACAGTCAACTGCATTTTTCTCTGGTGACCAAGCTTCCACTGACAAGGAAG___AGGATTATATTCGTTATGCCCATGGTCTGATATCTGACTACATCCCTAAAGAATTAAGTGATGACTTATCTAAATACTTAAA|TGCCTATGATTACACAATACCACCTATGGAGAAAGCTGTTGTGAAAACGGACATTCAGA	in-frame	LKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLn|AYDYTIPPMEKAVVKTDIQ	.
TALL_VC076	CCDC88A	SRSF11	-/-	+/+	2:55291676	1:70228422	splice-site	splice-site	translocation	upstream	upstream	1	0	1	214	705	low	.	.	.	CTCAAGGAAAAATAAAATTAGTAAAAGAATCTTCTCTGTCACGACAATCAAAAGATAGTAACCCTTATGCAACTTTACCTCGTGCAAGCAGCGTGATCTCAACTGCCGAAGGAACTACACGAAGG...CAAAAAGCAGGTCTAGGGAGCAACAAAGCTCCTAATTCTATTACCCACTACATGACATGTGGGCCAAGTG|TGATTCGCCTTTGCCAGTCTCATCTCGTGcCTGCTTTGTTAAGTTCCATGATCCAG	out-of-frame	KSRSREQQSS*fyyplhdmwakc|DSPLPVSSRaCFVKFHDP	.
TALL_VC076	EHBP1	UGP2	+/+	+/+	2:62771392	2:63857829	splice-site	splice-site	deletion	downstream	upstream	1	0	0	45	277	low	.	.	duplicates(1)	CTATCGTGGTGTTGTTGTGTGGCCTGTTCCTGAAAACATTGAAATCACTGTAACACTTTTTAAG___GATCCTCATGCGGAAGAATTTGAAGACAAAGAGTGGACATTTGTCATAGAAAAT|CACACCAAAAAAGACCTGGATGGATTTCGGAA	in-frame	YRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIEN|HTKKDLDGFR	.
TALL_VC076	ELL	UPF1	-/-	+/+	19:18521921	19:18850075	splice-site	splice-site	inversion	upstream	upstream	1	0	0	81	107	low	.	.	.	GGAGGAaAGGcGCTACGGGCTGTCGTGCGGGCGGGTTAGCGACGGCAGCAAGGTGTCGGTGTTCCACGTGAAGCTCACCGACAGTGCCCTGAGGGCCTTCGAGAGCTACCGCGCCAGACAG|CCACATTGTAAATCACCTTGTGAGGGCAAAATGCAAAGAGGTGACCCTGC	out-of-frame	EeRrYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQ|phckspcegkmqrgdp	.
TALL_VC076	ELL	UPF1	-/-	+/+	19:18521921	19:18847744	splice-site	splice-site	inversion	upstream	upstream	1	0	0	81	102	low	.	.	.	ATGGTCGCAAGATGGCGGCGCTGAAGGAGGATAGGAGCTACGGGCTGTCGTGCGGGCGGGTTAGCGACGGCAGCAAGGTGTCGGTGTTCCACGTGAAGCTCACCGACAGTGCCCTGAGGGCCTTCGAGAGCTACCGCGCCAGACAG|TTACTGTGGAATACACGATCCTG	out-of-frame	MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQ|llwntrs	.
TALL_VC076	AGTPBP1	BAZ1B	-/-	-/-	9:85575315	7:73449689	splice-site	splice-site	translocation	upstream	downstream	0	1	0	211	211	low	.	.	.	AAGACTGACCTCTCCATTGGAGTATAATCTGCCTTCCAGCCTGCTTGACTTTGAAAATaATTTAATTGAATCAAGCTGCAAAGTAACTAG|GTGAGGATGACAAATTGATCTTGTGTGATGAGTGTAATAAAGCCTTCCACCTGTTTTGTCTGAGGCCGGCCCTCTATGAAGTACCgGATGGTGAGTGGCAGTGCCCAGCTTGCCAGCCCGCTACTGCCAGGCGCAACTCCCGT	out-of-frame	RLTSPLEYNLPSSLLDFENnLIESSCKVTr|*	.
TALL_VC076	ARID2	ANO6	+/+	+/+	12:45821487	12:45429105	splice-site	splice-site	duplication	downstream	upstream	1	0	0	45	87	low	.	.	.	GTCGG___ATTATCTGCGTCAAAGTTATGGGCTGTCCATGGACTTTAATTCGCCAAATGATTATAATAAATTGGTGCTTTCACTGTTATCTGGACTCCCAAATGAAGTGGACTTTGCTATTAACGTATG...AGGATCCTTTTCCACTGTATTTGGAGAAGAATGGAAAGAGAAGACTGATAGAGACTTCGTTAAG|CACGTCATCTACTCTGTGAAATTTTTCATTTCATATGCAATTCCCGATGTATCAAAACGCAC	in-frame	GSFSTVFGEEWKEKTDRDFVK|HVIYSVKFFISYAIPDVSKR	.
TALL_VC076	KLHDC4	GSE1	-/-	+/+	16:87709265	16:85654278	splice-site	splice-site	inversion	upstream	upstream	1	0	0	204	171	low	.	.	.	GGGTGCTCTACGTCTATGGGGGCATGTTTGAGGCCGGCGACCGCCAGGTCACCCTCAGtGACCTGCACTGCCTGGACCTGCACAGGATGGAGGCGTGGAAGGCCTTGGTGGAGATGGACCCAG|GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCG	out-of-frame	VLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEMDP|gcrlqeqqwrsgtphcgap	.
TALL_VC076	GSE1	KLHDC4	+/+	-/-	16:85648751	16:87703432	splice-site	splice-site	inversion	downstream	downstream	0	1	0	116	69	low	.	.	.	CTGGAGGAGTGAGAGCCGGCAG|GCTGTGACAAACCCTGTGCCCACGCTGCCTCCACTGCCGGGAGACTCAGGGCTGGGGGAGACATGCCCTGGTCACCACTGCGGAGACTCAGGGCTGGGGGAGACATGCCCTGGC	out-of-frame	WRSESRQ|avtnpvptlpplpgdsglgetcpghhcgdsglgetcp	.
TALL_VC076	HOOK3	FGFR1	+/+	-/-	8:42906258	8:38457534	splice-site	splice-site	inversion	downstream	downstream	1	0	0	66	317	low	.	.	.	CGTAGAGTCGCTGGAGCGGGCGGAGCTGTGCGAGAGCCTCCTCACTTGG___ATCCAGACATTTAATGTGGATGCACCATGCCAGACCGTGGAAGATTTAACGAATGGGGTTGTGATGGCCCAGGTTCTTCAAAAGAT|GGTCAGTTTGAAAAGGAGGATCGAGCTCACTGTGGAGTATCC	in-frame	VESLERAELCESLLTWIQTFNVDAPCQTVEDLTNGVVMAQVLQKm|VSLKRRIELTVEY	.
TALL_VC076	GRAMD4	DAZAP1	+/+	+/+	22:46637960	19:1421151	splice-site	splice-site	translocation	downstream	upstream	0	1	0	98	705	low	.	.	.	CAGAGTTTGATCGACTGAATGAGATCAAAGGTCACCTGGAAATTGCCTTATTGGAAAAACATTTCTTAC|AAAGGACCCAGGAGCGATAACAGTAAATCAAATAAGATATTTGTCGGTGGAATTCCTCACAATTGTGGTGAGACAGAGCTCAGGGAATACTTCAAGAAGTTCGGAGTG___GTCACGGAGGTAGTCATGATCTATGACGCCGAGAAGCAGAGGCCCC	out-of-frame	EFDRLNEIKGHLEIALLEKHFL|qrtqer*	.
TALL_VC076	SMARCC1	PAFAH1B1	-/-	+/+	3:47661294	17:2674060	splice-site	splice-site	translocation	upstream	upstream	0	1	0	301	267	low	.	.	.	CAGGGCCCGATGAGCCAGAGAAGCTTG|CTACTGTGTGAAGACATTCACAGGACACAGAGAATGG___ACTAAAAAAAGTGGTAAACCTGGGCCATTCTTGCTGTCTGGATCCAGAGACAAGACTATTAAGATGTGGGATGTCAGTACcGG	out-of-frame	GPDEPEKL|atv*	.
TALL_VC076	WDR1	JADE1	-/-	+/+	4:10097711	4:128816367	splice-site	splice-site	inversion	upstream	upstream	1	0	0	874	5	low	.	.	.	CAACAAAGTCATCAACAGCGTGGACATCAAGCAGAGCCGGCCATACCGGCTGGCCACGGGAAGCGATGATAACTGCGCGGCATTCTTTGAGGGACCCCCATTCAAGTTCAAGTTCACAgTTGGC|TTCATAGCCCTGATGAAGCAAGTTACTCTGCTCTCCTAATAAATGCAAGAAAATGACCTTGGAGGGCCTTTTT	out-of-frame	NKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTvG|fialmkqvtlls*	.
TALL_VC076	BIRC6	SLC30A6	+/+	+/+	2:32445668	2:32220213	splice-site	splice-site	duplication	downstream	upstream	0	1	0	26	33	low	.	.	.	TGCATCTTTGCTTACTGCAGTGTCCAGACAGTTACAGGACAGGCTAACACCAATGGAGGCTTTACTTCAGACAAG|GCTGGATCAGTGCATGTAAGAATTCGACGAGATGCCAATGAACAAATGGTT...GCTGTACACTCTAGTGTCTACTCTAACTGTTCAAATTTTCAAGGATGACTGGATTAGGCCTGCCTTATTGTCTGGGCCTGTTGCAGCCAATGTCCTAAACTTTTCAGATCATCACGTAATCCCAAT	out-of-frame	ASLLTAVSRQLQDRLTPMEALLQTr|ldqcm*	.
TALL_VC076	CEP85L	RNGTT	-/-	-/-	6:118565529	6:88614395	splice-site	splice-site	deletion	upstream	downstream	1	0	0	242	107	low	.	.	.	GGCTTACAGAGCAGCTGCGGACAAATCCTTTGGAAGGTAGAAATACAGAGGATTCTTACAGTTTAGCTCCTTGGCAACAGtAGCAAATTGAAGACTTTCGACAAGGAAGTGAAACACCAATGCAG|GTGACAAAAGAGCTGAAACAGTATGACAACAAAATTATAGAATGCAAATTTGAGAACAACAGCTGGGTCTTCATGAGACAGAGAACAGACAAAAGTTTTCCTAAT	in-frame	LTEQLRTNPLEGRNTEDSYSLAPWQQ*QIEDFRQGSETPMQ|VTKELKQYDNKIIECKFENNSWVFMRQRTDKSFP	.
TALL_VC076	EZH2	XXbac-BPG246D15.9	-/-	-/-	7:148817877	6:32830806	splice-site	splice-site	translocation	upstream	downstream	0	1	0	428	418	low	.	.	.	GAACAATGATAAAGAAGAAGAAGAGAAGAAAGATGAAACTTCGAGCTCCTCTG|ACCCTGGTATACATATATGGGGATATGCTCAGCAACGTGGGAGCTGCAGAGAAGGTTTTCTCCTACATGGACCGACAGCCAAATCTGCCTTCACCTGGCACGCTTGCCCCCACCACTCTGCAGGGGGTTGTGAAATTCCAAGACGTCTCCTTT	out-of-frame	NNDKEEEEKKDETSSSS|dpgihiwgyaqqrgscregfllhgptaksaftwhacphhsaggceiprrll	.
TALL_VC076	EZH2	TAP2	-/-	-/-	7:148817877	6:32830806	splice-site	splice-site	translocation	upstream	downstream	0	1	0	428	418	low	.	.	.	GAACAATGATAAAGAAGAAGAAGAGAAGAAAGATGAAACTTCGAGCTCCTCTG|ACCCTGGTATACATATATGGGGATATGCTCAGCAACGTGGGAGCTGCAGAGAAGGTTTTCTCCTACATGGACCGACAGCCAAATCTGCCTTCACCTGGCACGCTTGCCCCCACCACTCTGCAGGGGGTTGTGAAATTCCAAGACGTCTCCTTT	out-of-frame	NNDKEEEEKKDETSSSS|dpgihiwgyaqqrgscregfllhgptaksaftwhacphhsaggceiprrll	.
TALL_VC076	EZH2	ELK4	-/-	-/-	7:148884164	1:205623891	splice-site	splice-site	translocation	upstream	downstream	0	1	0	125	89	low	.	.	.	CCGACACCCGGTGGGACTCAGAAGGCAGTGGAGCCCCGGCGGCGGCGGCGGCGGCGCGCGGGGGCGACGCGCGGGAACAACGCGAGTCGGCGCGCGGGACGAAG|CTCATTGCTATGGACAGTGCT...CCTGCAGAAGCCTCAGAACAAGCACATGATCTGTTGGACCTCTAATGATGGGCAGTTTAAGCTTTTGCAGGCAGAAGAGGTGGCTCGTCTCTGGGGGATTCGCAAGAACAAGCCTAACATGAAT	.	.	.
TALL_VC076	CBFA2T3	ACSF3	-/-	+/+	16:88881291	16:89120801	splice-site	splice-site	inversion	upstream	upstream	1	0	0	278	606	low	.	.	.	GCCAGGAGGCCGACCGCGAGGAGCTCAACCACTGGGCGCGGCGCTACAGCGACGCCGAGGACACAAAGAAGGGCCCCGCTCCCGCCGCGGCCCGGCCCCGCAGCAGCTCCGCCGGTCCCGAAGGGCCTCAGCTAG|GTTCCGTGGGGACCCCACTGCCTGGAGTACAGGTGCGCA	in-frame	QEADREELNHWARRYSDAEDTKKGPAPAAARPRSSSAGPEGPQL|gSVGTPLPGVQVR	.
TALL_VC076	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89145267	splice-site	splice-site	inversion	upstream	upstream	0	1	0	100	867	low	.	.	.	CCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GGGACACCGTGGTGTTTAAGGATGGCCAGTACTGGATCCGAGGCCGGACCTCAGTGGACATCATCAAGAC...GGAGGCTACAAGGTCAGCGCCCTGGAGGTGGAGTGGCACCTGCTGGCCCACCCCAGCATCACAG___ATGTGGCTGTGATTGGAGTTCCGGATATGACATGGGGCCAGCGGGTCACTGCTGTGGTGACC	.	.	.
TALL_VC076	ACSF3	CBFA2T3	+/+	-/-	16:89102759	16:88901656	splice-site	splice-site	inversion	downstream	downstream	1	0	0	635	111	low	.	.	.	CTGGTCCACAAGTGGGCATGGACCAAAGACGACGTGATCCTCCACGTGCTCCCGCTGCACCACGTCCATGGTGTGGTCAACGCGCTGCTCTGTCCTCTCTGGGTGGGAGCCACCTGTGTGATGATGCCTGAGTTCAGCCCTCAGCAG|CCCCAGTGGACAGGAAAGCTAAGGCCTCAGCGATGCCGGACTCCCCAGCGGAGGTGAAGACGCAGCCCCGG	out-of-frame	LVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQQ|pqwtgklrpqrcrtpqrr*	.
TALL_VC076	SLC7A5	BANP	-/-	+/+	16:87851724	16:88076590	splice-site	splice-site	inversion	upstream	upstream	0	1	0	225	95	low	.	.	.	CTGGCCCTGGCCCTGATCATCCTGCTGGGCTTCGTCCAGATCGGGAAGG|ACGGCCGAAGCCCTGCAGCCCACGCTACAGCCGGAGATGCAGCTCGAGCACGGGGCCATCCAGATTCAGTGAGCGGT...CACGGCCTCGGCACAGGCAGCGGCTGCACGTGTTCTGCTGAAGTGCGTCTGAAGGCCGCTGCCTCCGCGGGGAACAGCATCCTATCAACTGAAAGAGCAGCCGCCGCCGCCCCCAGCCGGAGAC	out-of-frame	LALALIILLGFVQIGK|dgrspaahatagdaararghpdsvs	.
TALL_VC076	BANP	SLC7A5	+/+	-/-	16:88018667	16:87851849	splice-site	splice-site	inversion	downstream	downstream	0	1	0	79	228	low	.	.	.	AGAAGCAGCTGGACCCGCTCACCATCTACGGCATCCGGT|TGCTGCTCACGGCCGTGAACTGCTACAGCGTGAAGGCCGCCACCCGGGTCCAGGATGCCTTTGCCGCCGCCAAGCTCCTGGCCCTGGCCCTGATCATCCTGCTGGGCTTCGTCCAGATCGGGAAGG___GTGAT	in-frame	KQLDPLTIYGIR|lLLTAVNCYSVKAATRVQDAFAAAKLLALALIILLGFVQIGKG	.
TALL_VC078	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	7	13	2	60	80	high	.	.	duplicates(2),low_entropy(2),mismappers(2),mismatches(6)	GGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCAC	.	.	.
TALL_VC078	MLLT10	PICALM	+/+	-/-	10:21617207	11:85959060	splice-site	splice-site	translocation	downstream	downstream	7	8	6	30	304	high	.	.	.	GCATGACATGTAATAAACATGGATGTCGACAGGCTTTCCATGTAACATG___CGCTCAGTTTGCCGGACTGCTTTGTGAAGAAGAAGGTAATGGTGCCGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG___AAAAAGAGCAAACGGGGATCTAATAGGTCATATGATCAAAGTTTAAGTGATTCTTCCTCTCACTCTCAGGATAAACATCATGAGAAAGAGAAAAAA|ATACAGTTTATGTAACTTGATGGAAGAAAATGGAATTACTCCAAAAAGACAAGTGCTCAAGCAGCAAAATCCTTACTTCCAGCAAAATCCAAACTGCTGTCTCTTAAATCTCTTAAACTCTCTTCTTCCATTAGAATGCTACAAGTAACTCAGTGAAGGCCCATGAAGGAAATTGGGACTAGTTTATAGGAGAACGTATCAATACAGTTTATAAAGCCAAGAATTGCTATGATTTAAGACTAAGATCTGTCTTTTTGGTGACTAACCCTTCAATTCTTTCAACTCCTG	in-frame	MTCNKHGCRQAFHVTCAQFAGLLCEEEGNGADNVQYCGYCKYHFSKLKKSKRGSNRSYDQSLSDSSSHSQDKHHEKEKK|IQFM*	.
TALL_VC078	PICALM	MLLT10	-/-	+/+	11:85974708	10:21651673	splice-site	splice-site	translocation	upstream	upstream	2	5	3	268	74	high	.	.	.	CAGAACCAGAACCTTCCTGTTGCCAAACTCCCACCTAGCAAGTTAGTATCTGATGACTTGGATTCATCTTTAGCCAACCTTGTGGGCA___ATCTTGGCATCGGAAATGGAACCACTAAGAA___TGATGT...TGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCTGCAACAATG___GCACCCCCTGTAATGGCCTATCCTGCTACTACACCAACAGGCATGATAGGATATGGAATT___CCTCCACAAATGGGAAGTGTTCCTGTAATGACGCAACCAACCTTAATATACAGCCAGCCTGTCATGAGACCTCCAAACCCCTTTGGCCCTGTATCAGGAGCACAG|AAATATAAAGAGAAGGACAAACACAAACAGAAACACAAGAAGCAGCCAGAACCATCACCTGCATTGGTTCCATCCTTGACTGTTACTACAGAAAAA___ACTTATACAAGCACTAGCAACAACTCTATATCTGGATCATTGAAGCGCTTGGAAGATACTACTGCACGATTTACAAATGCAAATTTCCAGGAAGTCTCTGCACACACCTCTAGTGGAAAAGATGTTTCAGAGACTAGAGGGTCAG	in-frame	WQPKVAPTTAWNAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVMRPPNPFGPVSGAQ|KYKEKDKHKQKHKKQPEPSPALVPSLTVTTEKTYTSTSNNSISGSLKRLEDTTARFTNANFQEVSAHTSSGKDVSETRGS	.
TALL_VC078	MLLT10	PICALM	+/+	-/-	10:21614924	11:85959060	splice-site	splice-site	translocation	downstream	downstream	2	7	1	86	304	high	.	.	.	TGGGCCCATGTGGTTTGTGCCCTGTATATTCCAGAGGTACAATTTGCCAATGTTTCCACAATGGAACCAATTGTTTTACAGTCTGTTCCGCATGATCGTTATAATAAG___ACTTGCTACATTTGTG...GACATGTAATAAACATGGATGTCGACAGGCTTTCCATGTAACATG___CGCTCAGTTTGCCGGACTGCTTTGTGAAGAAGAAGGTAATGGTGCCGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG|ATACAGTTTATGTAACTTGATGGAAGAAAATGGAATTACTCCAAAAAGACAAGTGCTCAAGCAGCAAAATCCTTACTTCCAGCAAAATCCAAACTGCTGTCTCTTAAATCTCTTAAACTCTCTTCTTCCATTAGAATGCTACAAGTAACTCAGTGAAGGCCCATGAAGGAAATTGGGACTAGTTTATAGGAGAACGTATCAATACAGTTTATAAAG...TTGTATTTGGAAAAGCTGCCTGGAGAGAAGAACTGTGTCCTTTACTGTATTTCAACAGGACTCTTTTGGGGGATCAAAATTAAAATTCCTAATTATGCATTATCTTTCTTTTCTCCAGTCCTCAC	in-frame	TCNKHGCRQAFHVTCAQFAGLLCEEEGNGADNVQYCGYCKYHFSKL|IQFM*	.
TALL_VC078	MLLT10	PICALM	+/+	-/-	10:21735235	11:86031611	splice-site	splice-site	translocation	downstream	downstream	1	0	6	182	88	high	.	.	mismappers(1)	CCTACCCCTCTCACCCACACAACCGTACCACCTAATGCAACACATCCAATGCCAGCTACACTGACTAACAG___TGCCTCAGGACTAGGATTACTTTCTGACCAGCAACGACAAATACTTATTCATCAACAGCAGTTTCAGCAGTTGTTAAATTCTCAACAGCTCACACCA|ACTTAATTCAGTGCACAAATGAGATGAATGTGAACATCCCACAGTTGGC	out-of-frame	PTPLTHTTVPPNATHPMPATLTNSASGLGLLSDQQRQILIHQQQFQQLLNSQQLTP|t*	.
TALL_VC078	MLLT10	PICALM	+/+	-/-	10:21614924	11:85960777	splice-site	splice-site	translocation	downstream	downstream	0	1	1	86	41	medium	.	.	.	AGAAGAAGGTAATGGTGCCGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG|CTGTCGGCAGCATCCAGCCCCTCCAGTCACAGTCCTCACAGAGCTTCAGGAAAGGACCC...TTAG___ATACAGTTTATGTAACTTGATGGAAGAAAATGGAATTACTCCAAAAAGACAAGTGCTCAAGCAGCAAAATCCTTACTTCCAGCAAAATCCAAACTGCTGTCTCTTAAATCTCTTAAACTCT	out-of-frame	EEGNGADNVQYCGYCKYHFSKL|lsaasspsshsphrasgkd	.
TALL_VC078	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	7	10	0	54	63	high	.	.	duplicates(1),low_entropy(8)	CAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAG	.	.	.
TALL_VC078	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	11	4	0	187	19	high	.	.	low_entropy(1)	CTGAAATGCCCTCTTCACACCGTCCTGAAACTGACGCCTGTCGCTTATG___GCTGCCGTGTGGAATCCATCTACCTGAACGTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGACCAATT	out-of-frame	LKCPLHTVLKLTPVAYGCRVESIYLNVESVCTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|elksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
TALL_VC078	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	11	1	97	24	high	.	.	.	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGC	.	.	.
TALL_VC078	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	93	24	low	.	.	.	GGGAGCCATGGGGCCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTC	out-of-frame	EPWGLNMQAAQPKGNPVAAPT|gmsrgqfgqgqepldmf	.
TALL_VC078	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	8	0	144	54	high	.	.	low_entropy(7),mismatches(3)	CTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCC	.	.	.
TALL_VC078	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	6	1	159	640	medium	.	.	duplicates(1)	TGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC078	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	22	640	low	.	.	read_through(6)	CAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAA	out-of-frame	QEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC078	PTBP1	DAZAP1	+/+	+/+	19:799443	19:1417500	splice-site	splice-site	deletion	downstream	upstream	1	3	0	638	218	medium	.	.	mismatches(1)	CCGTCCCCCGCGGGTCTGCTCTGTGTGCCATGGACGG___CATTGTCCCAGATATAGCCGTTGGTACAAAG|GAAGCTCTTCGTGGGCGGTCTTGACTGGAGCACGACCCAAG___AGACTCTGCGCAGCTACTTTTCCCAATATGGAGAAGTCGTAGATTGTGTT...___AAAGGACCCAGGAGCGATAACAGTAAATCAAATAAGATATTTGTCGGTGGAATTCCTCACAATgGTGGTGAGACAGAGCTCAG	out-of-frame	MDGIVPDIAVGTK|ealrgrs*	.
TALL_VC078	LINC01059	GRAMD1B	+/+	+/+	11:123454829	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	2	0	8	54	medium	.	.	.	CAGCAGTGTCTTCCAAATTTGAAATGAGTGACAGTGGGTTATAATTAGGGGAGAAGATGCTCTTGATGCTACTGAGAAGATACAGAGTGAGAACTTTTCTTAGAAAAGTCTGAGGTTGTAAAGAAGAACCAAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGA	.	.	.
TALL_VC078	C19orf35	C19orf35	-/.	-/.	19:2276818	19:2278461	intron	intron	inversion/5'-5'	upstream	upstream	1	1	0	5	5	medium	.	.	.	.	.	.	.
TALL_VC078	EEF1A1P6	RAPGEF5	-/-	-/-	7:22511077	7:22353252	exon	intron	deletion/read-through	upstream	downstream	0	0	10	21647	1	low	.	.	low_entropy(3),mismatches(15)	AAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTG...|...ATAACAGCTTCC	.	.	.
TALL_VC078	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	4	2	0	17	6	low	.	.	.	GGGAGTGCTAAAAGCAAGGAGCCAGCAAGTCTAGCAAACATGCAAGCCCTGCCCCAGCTTTTCTCCCAACACTCAGCTCTTCTCCCAACACAAGAGCTTTTGGAGGTCACTTCTGGGGCCTTTGCTAAGCAGGCCACTCCTTGCTTCTCCTGCAGACAACAAGGTTTCCAGCATGATTATTGCAATGACCAATGGAACAATGATGAAACATCCATTTTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AA	.	.	.
TALL_VC078	RUNX3	CLIC4(28966),RUNX3(26221)	-/-	./-	1:24919240	1:24873290	splice-site	intergenic	deletion/read-through	upstream	downstream	4	0	1	256	11	low	.	.	mismatches(1)	CGCTGAGCTGCGCAATGCCTCGGCCGTCATGAAGAACCAGGTGGCCAGGTTCAACGACCTTCGCTTCGTGGGCCGCAGTGGGCGAG___GGAAGAGTTTCACCCTGACCATCACTGTGTTCACCAACCCCACCCAAGTGGCGACCTACCACCGAGCCATCAAGGTGACCGTGGACGGACCCCGGGAGCCCAGAC|TTGCTTGGAACACTGAACCAGGAGTCAAGACCAAGAGATGGGTTCTAGGTGTGGATTTGACGCTGTGTGACCTTGG___CCCAG	out-of-frame	AELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREPR|lawntepgvktkrwvlgvdltlcdlgp	.
TALL_VC078	CD82	RP11-244C20.2(5802),RP11-45A12.1(32141)	+/+	./+	11:44615373	11:44662722	splice-site	intergenic	deletion/read-through	downstream	upstream	3	2	0	985	21	low	.	.	low_entropy(1)	AGCAGTTTCATCTCTGTCCTGC___AAACCTCCTCCAGCTCGCTTAGGATGGGGGCCTATGTCTTCATCGGCGTGGGGGCAGTCACTATGCTCATGGGCTTCCTGGGCTGCATCGGCGCCGTCAACGAGGTCCGCTGCCTGCTGGGGCTG___TACTTTGCTTTCCTGCTCCTGATCCTCATTGCCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGCAAG___CTGAAGCAGGAaATGGGCGGCATCGTGACTGAGCTCATTCGAGACTACAACAGCAGTCGCGAGGACAGCCTGCAGGATGCCTGGGACTACGTGCAGGCTCAG|ACCAGGCTCCTAGATGTTGGGGACTGAACCCTGGCTCCGTTCCACCTGGCTTGTCACTACGTTGTCATTCACAAACGGTGAGCTAATCACAGAAGCAACCTGTAGGCCAGTGATGAGCAT...___TCTGCCGAATGCCTGCGATTGCAGGCACGCACCGCCACGCCTGACTGGTTTTGG	out-of-frame	SSFISVLQTSSSSLRMGAYVFIGVGAVTMLMGFLGCIGAVNEVRCLLGLYFAFLLLILIAQVTAGALFYFNMGKLKQEMGGIVTELIRDYNSSREDSLQDAWDYVQAQ|trlldvgd*	.
TALL_VC078	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69079020	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	1	43	17	low	.	.	low_entropy(1)	GCTGGATGCAGATGTGCTGCCTGCTGAGCGTGATGACTTCATCCTGGGG___ATTCTCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTG...GAACTTGGAACCATCCATCTAGTGGAAATTGTAAATTATAACAAAACCCAATGGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCCCTGTCATCGAGGGAGTTTTTGTGCTGGTAAAG	out-of-frame	LDADVLPAERDDFILGILNCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLL|*	.
TALL_VC078	LIMD1	SACM1L	+/+	+/+	3:45668356	3:45703438	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	3	72	349	low	.	.	low_entropy(1),mismatches(1)	AAGAAGACTTCCTG___TACTCTGGTTTCCAGCAGTCGGCTGACAGGTGTTTTCTTTGTGGACATCTGATCATGGACATG|GCATATCACACCTGAAAAATTTTATGTGGAAGCTTGTGATGATGGAGCAGATGACGTACTTACCATTGACCGTGTGTCCACAGAGGTTACCCTTGC	out-of-frame	EDFLYSGFQQSADRCFLCGHLIMDM|ayht*	.
TALL_VC078	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021694	splice-site	splice-site	deletion/read-through	downstream	upstream	0	4	0	422	120	low	.	.	mismatches(1)	GGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTAGAGCAGAGCCGGAGCCAGGTGCAGGCCATTGGAGAGAAGGTCTCCTTGGCCCAGGCCAAGATTGAGAAGATCAAGGGCAGCAAGAAGGCCATCAAG___GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTG	out-of-frame	MPQTCDGTGQMHLGr|*	.
TALL_VC078	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	422	108	low	.	.	read_through(4)	GTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCAAGCACCGCCCCCTGGACGAGCGGGCCCTGCAG___CCCTCcCAGGAGAAGCTGAAGGAaTTTCCTGTGTGCGTGAGCACCAAGC	out-of-frame	MPQTCDGTGQMHLGr|cspvpstllqstcrnmapssraprtlacrdapatgsrastapwtsgpcspprrs*	.
TALL_VC078	IL9R	WASH6P	+/+	+/+	X:156004565	X:156021694	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	511	120	low	.	.	.	ATGGGACTGGGCAGATGCATCTGGGAAG...GGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTAGAGCAGAGCCGGAGCCAGG	out-of-frame	GHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|veqsrsq	.
TALL_VC078	IL9R	WASH6P	+/+	+/+	X:156006188	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	402	108	low	.	.	duplicates(1)	CAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAAT...CAGGAGAAGCTGAAGGAaTTTCCTGTGTGCGTGAGCACCAAGCCGGAGCCCGAGGACGATGCAGAAGAGGGACTTGGGGGTCTTCCCAGCAACATCAGCTCTGTCAGCTCCTTGCTGCTTTTCA	out-of-frame	GNTLVAVSIFLLLTGPTYLLFKLSPr|cspvpstllqstcr	.
TALL_VC078	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	16	11	low	.	.	.	CAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCA	.	.	.
TALL_VC078	MGMT	RP11-109A6.3(44288),EBF3(21560)	+/+	./+	10:129759341	10:129813723	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	107	5	low	.	.	mismappers(1)	CGGCTCTTCACCATCCCGTTTTCCAGCAAG___AGTCGTTCACCAGACAGGTGTTATGGAAGCTGCTGAAGGTTGTGAAATTCGGAGAAGTGATTTCTTACCAGCAATTAGCAGCCCTGGCAGGCAACCCCAAAGCCGCGCGAGCAGTGGGAGGAGCAATGAGAGGCAATCCT|GTCTTGGAAGAAACCATCACACCGAGGTCATTTCTGAGCACAGCGTGGAAGCTCCTATGTTTGCAG	out-of-frame	ALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNP|vleetitprsflstawkllcl	.
TALL_VC078	AC114730.2	RTP5	+/+	+/+	2:241844478	2:241871714	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	44	43	low	.	.	.	GCGGCGCGGGGCGGCCTGACGGGAAGGCGGGAGGCGAAGTGCTGACTGCGCCGCGGTCTCTCAGCCGCCAACACACCGCGGACGCCCGGGGACAGCGACCGCTTCCTCCCTCCCCGCCCGCCTTGTCTCTTTTT|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCA	.	.	.
TALL_VC078	MTCH2	C1QTNF4	-/-	-/-	11:47622701	11:47590815	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	223	8	low	.	.	low_entropy(1)	ATTTTTCGC___GGGTCTTGTTCCTCGCCTTCTAGGTGACATCCTTTCTTTGTGGCTGTGTAACTCACTGGCCTACCTCGTCAATACCTATGCACTGGACAGTGGG___GTTTCTACCATGAATGAAATGAAGAGTTATTCTCAAGCTGTCACAGGA___TCTTGCTGGTGGATGCCCTCCTTACTCCCCAATATATACGTCTTGGATAGACTGTTGGTGCATGCTACAAAAAGAG|GCGCCATGCTGCCGCTTCTGCTGGGCCTGCTGGGCCCAGCGGCCTGCTGGGCCCTGGGCCCGACCCCCGGCCCGGGATCCTCTGAGCTGCGCTCGGCCTTCTCGGCGGCACGCACCACCCCCCTGGAGGGCACGTCGGAGATGGCGGTGACCTTCGACAAGGTGTACGTGAACATCGGG	in-frame	FFAGLVPRLLGDILSLWLCNSLAYLVNTYALDSGVSTMNEMKSYSQAVTGSCWWMPSLLPNIYVLDRLLVHATKR|gaMLPLLLGLLGPAACWALGPTPGPGSSELRSAFSAARTTPLEGTSEMAVTFDKVYVNI	.
TALL_VC078	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	0	3	0	68	169	low	.	.	low_entropy(1)	CCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCA...ACTGTCTTATTCCtCTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCT	.	.	.
TALL_VC078	RPS2P46	PRPSAP2	-/-	+/-	17:19445997	17:18888649	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	184	2	low	.	.	duplicates(1)	ATTTCTAAGACCTACAGCTACCTgACCCCCGACCTCTGGAAGGAGACTGTATTcACCAAGTCTCCCTATCAGGAgTTCACTGACCACCTCGTCAAGACCCACACCAGAGTCTCCGTGCAGCGGACT...|...CCCCcGCCCaGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGC	.	.	.
TALL_VC078	EEF1A1P19	NIM1K	-/-	+/-	5:43495550	5:43261764	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	1397	1	low	.	.	mismatches(2)	ACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCcGGTaTGGTGGTCACCTTTGCTCCAGTCAACgTTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTT...|...ATTAAAGACTTAAAcGTTAGACCTAAAACcATAAAAACCCTAGAAGAAAACCTAGGCAtTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACA	.	.	.
TALL_VC078	CD96	PLCXD2	+/+	+/+	3:111663163	3:111707926	intron	splice-site	deletion/read-through	downstream	upstream	0	1	1	50	44	low	.	.	homopolymer(1),mismappers(3),mismatches(2)	AGAAAACTTACAAACATGGTGGAAGGGCAAAGGGGAAGTAAGCAGGAGAGAGAGAGAACAAAGGAGGAAGTCCTACACCCTTTCAAACAAAAAA|GCTCACATGATTCATTCAGCTACTGGGTGGATGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTATCAAACGCCTCGCCAGGATCTCCTTGGTGAAG...CATGGGCTTTTTGGCATCAAGGTCTGGGATGGGCTGATGGAAATTGACTCGTTTCTTACACAGCACCCCCAGGAGATTATCTTCCTGGATTTCAACCACTTCTATGCCATGGATGAGACCCATCAC	.	.	.
TALL_VC078	GCN1L1	RP11-768F21.1	-/-	-/-	12:120131291	12:119651752	CDS	intron	deletion	upstream	downstream	0	0	2	248	0	low	.	.	low_entropy(1),mismappers(1)	CGGGGTGGGCCCATGGGCCTCATGGGTGCTGGGGACATGCTGTAAAATACCGGTTGATCCCAGTCGTGTCCTTCCACCCAGtGGACGTGTCCGGCATTGACTGGAgGGTTCGGCACGcGCGGAG...|...CTGGTTCAGG	.	.	.
TALL_VC078	CCDC94	SHD	+/+	+/+	19:4262114	19:4282870	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	196	3	low	.	.	mismappers(1)	GGAGGAGGACGAGCAGGAGACCGC___GGCCCTGTTGGAGGAAGCCAGAAAGCGAAGACTGCTGGAGGACTCCGACTCAGAGGATGAGGCTGCTCCCTCGCCCCTGCAGCCAGCCCTTCGGCCCAACCCCACCGCCATCCTGGATGAG|CTGGAAGCCGACACTGAGTATTTAGACCCCTTTGATGCTCAGCCTCATCCTGCACCCCCGGATGATGGGTACATGGAGCCCTACGATGCCCAATGGGTCATGAGTG___AACTTCCCGG	in-frame	EEDEQETAALLEEARKRRLLEDSDSEDEAAPSPLQPALRPNPTAILDE|LEADTEYLDPFDAQPHPAPPDDGYMEPYDAQWVMSELP	.
TALL_VC078	ELL	SUGP2	-/-	-/-	19:18521921	19:19031082	splice-site	splice-site	duplication	upstream	downstream	0	2	0	95	148	low	.	.	.	GACGGCAGCAAGGTGTCGGTGTTCCACGTGAAGCTCACCGACAGTGCCCTGAGGGCCTTCGAGAGCTACCGCGCCAGACAG|GGCAAAATAACATGGCAGCCAGACGAATTACACAGGAGACTTTTGATGCTGTATTACAAGAAAAAGCCAAACGATATCACATGGATGCCAGTGGTGAGGCTGTAAGCGAAACTCTTCAGTTTAAAGCTCAAG___ATCTCTTAAGGGCAGTCCCAAGATCCAGAGCAGAGATGTATGATGACGTCCACAGCGATGGCAGATACTCCCTCAGTGGATCTGTAGCTCACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTC	out-of-frame	DGSKVSVFHVKLTDSALRAFESYRARQ|gkitwqpdelhrrllmlyykkkpnditwmpvvrl*	.
TALL_VC078	ARID4A	ARHGAP1	+/+	-/-	14:58298700	11:46681379	splice-site	splice-site	translocation	downstream	downstream	0	1	0	220	122	low	.	.	.	GGACGGGGGCCCACGGAGGTCAGAGGGGAGGAGGACTCTGGAGCTGACAGCGCGCACTTCACCCGCAGTTG|GTACAAGAAgAACATCAAGGCCTTGTACATCGTGCATCCAACCATGTTCATCAAAACTCTGCTCATCCTCTTCAAGCCCCTCATCAG___CTTCAAGTTCGGGCAGAAGATCTTCTATGTGAATTACCTGAGCGAGC	.	.	.
TALL_VC078	FBXW11	STK10	-/-	-/-	5:171910572	5:172156788	splice-site	splice-site	duplication	upstream	downstream	1	0	0	93	102	low	.	.	.	AGACCATCGAGCTCATG___ATAAGTAATGGAACATCATCTGTGATCGTCTCCAGAAAcAGGCCATCAGAAGGAAACTATCAAAAAGAAAAAGACTTGTGTATTAAATATTTTGACCAGTGGTCTGAAT...GGACATATTAACTCTTACCTGAAGCCCATGTTGCAGCGGGACTTTATTACCGCTTTACCAG|GCCAAGAATAAGGAGACGGGTGCTTTGGCTGCGGCCAAAGTCATTGAAACCAAGAGTGAGGAGG	out-of-frame	GHINSYLKPMLQRDFITALP|gqe*	.
TALL_VC078	FBXW11	STK10	-/-	-/-	5:172006458	5:172083084	splice-site	splice-site	duplication	upstream	downstream	0	1	0	107	127	low	.	.	duplicates(1)	GCCGCCGGGGCCGCCATGGAGCCCGACTCGGTGATTGAGGACAAGACCATCGAGCTCATG|GCGCCAGGAACTCCGAGAGCTTCGGCTGCTCCAGAAAGAAGAGCATCGGAACCAGACCCAGCTG...AAGATGGAGCAAGACCATGCCGTGCGCCGCCGGGAGGAGGCCAGGCGGATCCGCCTGGAGCAGGATCGGGACTACACCAGGTTCCAAGAGCAGCTCAAACTGATGAAGAAAGAG___GTGAAGAACGAG	out-of-frame	MEPDSVIEDKTIELM|apgtprasaaperrasepdpa	.
TALL_VC078	PPP3CB	KDM5A	-/-	-/-	10:73467553	12:311064	splice-site	splice-site	translocation	upstream	downstream	1	0	0	121	309	low	.	.	.	TATTTTTCTGCTTTTATGTATTTTATATTTTTAAGGCTAATGACAAATAGTTACTTATCTATTAAGTTATTGATGTTCAACTTATCTTGCAGCTGCTGTATTAAAGTATGAAAATAATGTGATGAATATTCGACAGTTTAACTGTTCTCCACATCCTTACTGGTTGCCTAATTTTATGGATGTCTTCACGTGGTCTTTACCGTTTGTTGGAGAAAAAG|AGTGGCAGCAATTACGCTTATTTGGAGCAG	out-of-frame	iflllcilyf*g**qivtyllsy*cstylaAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK|ewqqlrlfga	.
TALL_VC078	CAPRIN1	HLTF	+/+	-/-	11:34083041	3:149049001	splice-site	splice-site	translocation	downstream	downstream	0	1	0	1043	71	low	.	.	.	GGTAGATGAGTGGACAGTTGAAACGGTTGAG|ACTAAAGGAGATAGTCCATTACATAGCATAAGGTGGCTAAGAGTGATCCTGGATGAAGGACATGCCATACGAAATCCAAATGCTCAGCAGACAA...ACTTGACTTAGAATCAGAAAGAAGATGGGTTTTGACAG___GTACTCCAATCCAGAATTCTTTAAAGGACTTGTGGTCTCTTCTTTCCTTTTTAAAACTTAAACCATTTATTGATAGAGAATGGTGGC	in-frame	VDEWTVETVE|TKGDSPLHSIRWLRVILDEGHAIRNPNAQQT	.
TALL_VC078	UVSSA	MAEA	+/+	+/+	4:1355245	4:1339074	splice-site	splice-site	duplication	downstream	upstream	0	1	0	33	211	low	.	.	.	GGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGgGGGGAAAGGCGCAGG|TCTCTGCTTTCTATCCGTCA...AGTCTTCCACTTCTCACAAGCCGAGAAGGTGTACATCATGTAGGCCCCACGTCGTGAAGCGCACGCCTCGGGGACGGGCTGCAGTGGGCGGGGAGGCCACGCCTTCCTCCTGTCCCACGCTCCAGC	in-frame	GGCLKRAIDLKAELELVLRKYKELDIEPEGGERRR|SLLSIR	.
TALL_VC078	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1094248	splice-site	splice-site	inversion	downstream	downstream	1	0	0	649	177	low	.	.	.	GTGCGGGTTTCCCGCGCGTCCGCCCCCGGACCGCAGGGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GAGATGGAAATCCAAGAGAAAACAGCCCATTCCTCAACAATGTCGAGGTGGAAC	out-of-frame	agfprvrprtaGDSFVASAYASGRKGAEEAERRARDKQ|emeiqektahsstmsrw	.
TALL_VC078	SLC12A7	NKD2	-/-	+/+	5:1093533	5:1033372	splice-site	splice-site	inversion	upstream	upstream	1	0	0	149	1006	low	.	.	.	GAAGAACATGGCACTTTTCGAG___GAGGAGATGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACGAGGAGAGCCGGCGGCGGGAGGCCAAG|TGGCACTCCCCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGG	out-of-frame	KNMALFEEEMDSNPMVSSLLNKLANYTNLSQGVVEHEEDEESRRREAK|whsplrklraast	.
TALL_VC078	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1053482	splice-site	splice-site	inversion	downstream	downstream	1	0	0	649	365	low	.	.	duplicates(1)	GGCTTCAGAACTCAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGtCGCCGCCCG...GCCGCAAAGGCGCtGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GGACCAGgCCAACGTCAGGCGGATGCACACGGCTGTGAAGCTCAATGGCGTCGTCCTCAACAAGTCCCAGGATGCGC	out-of-frame	RKGAEEAERRARDKQ|gpgqrqadahgceaqwrrpqqvpgc	.
TALL_VC078	SLC12A7	NKD2	-/-	+/+	5:1060344	5:1032152	splice-site	splice-site	inversion	upstream	upstream	0	1	0	280	854	low	.	.	.	TAATGATGGAGCAGAGGTCGCAGATGCTGAAGCAGATGCAGCTGTCCAAGAACGAGCAGGAGCGAGAG|GAGCTGCCCAATGGGGACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTAC...GCACTCCCCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGGGACAACTCCTCAGCGCAGATGACGGAGAGAGGGCAGCAAACCGCGAGGGCCCGCGAGGACCGGGCGGGCAGCGCCTCAACATTGAC	in-frame	MMEQRSQMLKQMQLSKNEQERE|ELPNGDPKEGPFREDQCPL	.
TALL_VC080	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	3	28	0	102	101	high	.	.	duplicates(1),low_entropy(14),mismappers(1),mismatches(1)	TTACAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAG	.	.	.
TALL_VC080	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	19	2	199	100	high	.	.	duplicates(2),low_entropy(12),mismatches(3)	ACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCC...AGGTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTAgTCATGTGCACTCCAAAGAGACATTCTCCTTCAG	.	.	.
TALL_VC080	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	11	6	3	53	30	high	.	.	duplicates(3),low_entropy(1),mismatches(5)	GGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...TTTTGATCATCTTGCGGGGC?GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTC	.	.	.
TALL_VC080	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	10	1	60	30	high	.	.	duplicates(2),low_entropy(1)	AAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGC	.	.	.
TALL_VC080	MIR181A1HG	HOXA11-AS	-/-	+/+	1:198900411	7:27188601	splice-site	splice-site	translocation	upstream	upstream	5	2	4	160	620	high	.	.	duplicates(1)	CTCTGCTCTGCCTCCGGGGACAAGAAACTAGAGCAAATAACCGTTTTGAAATT___AGATCCTGGCAAAATTACCAACAATCAATGATGGAAACTGAAGGGAGATTGATTTAAATCTTCAATGACAGTTGTACAGAAGTTGAAGAAACACGTCATCTTTCCAAAGAAGAGTGAGTAGCTTGGTTGGTGGTACCCTAAAATTAGGGCATGATTAAG|GAGGTCCAACAGCCGAGCTTAGCCCACCGGGCTCTGGGAAAGACCCGACTGAGGCTAAAGCCGCCCCGGAAGGCCAAGTCCGAGTTCCATTTCTTGAAGAGGCCGGCGCGCGTAAGGCTGTGACATTGGCCCTGGCGACTGGCTTCCCAGGAGCTGTTCTTTCTCAGGAGCTCCACAGCGCGGGCCATCTCCAGAAAACTGTCTTCAGAGTGTATTTCCTTTTATCGTCAACCCAGAGCCCCACCGCGGCTAATGCAAGAGGCCAAAAAATGTTTGGAGG	.	.	.
TALL_VC080	MIR181A1HG	HOXA11-AS	-/-	+/+	1:198900411	7:27186683	splice-site	splice-site	translocation	upstream	upstream	2	2	6	160	321	high	.	.	duplicates(1)	GGCATGAAAACAGGGATTCTGCACCTGCATCATGGACAGTCTGGCAAAAGCCTCTGCTCTGCCTCCGGGGACAAGAAACTAGAGCAAATAACCGTTTTGAAATT___AGATCCTGGCAAAATTACCAACAATCAATGATGGAAACTGAAGGGAGATTGATTTAAATCTTCAATGACAGTTGTACAGAAGTTGAAGAAACACGTCATCTTTCCAAAGAAGAGTGAGTAGCTTGGTTGGTGGTACCCTAAAATTAGGGCATGATTAAG|GATTGAAGGAGCAATGTTTGGAGGAAGCGAAAGAAAGGAGAGGACACAGAGCACAGAGCAGCCAGGCAGAGCCAGGAGCTGAGAAGGGCCCAGACCTGAGGCCTCCCAACAACTCTCTTCTTGGAAGGATCTGGGATGTTGCTGAAGGAAAATAAAAAAATATGTAAAAAGATAACCTTTTGTTTTTCCCTCTCCAGGAAATAGCCAAAGTTATTTACATATCTTGGGGAGATTTAGAGTATAA	.	.	.
TALL_VC080	ATHL1	IFITM2	+/+	+/+	11:294196	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	10	29	3	2261	2115	medium	.	.	duplicates(5),low_entropy(2),mismatches(5)	GATGTTCGCAcGAcAAATCTGGcGATTTACGAGGCTGTGACGTCCCCCCAGGGCCCCGCCATGACCaGG___AGCATGTTTGCTGTGGGCTGGATGGAGCTGAAGGACGCAGTGCGGGCCCGGGGCCTCCTGGACAGGAGCTTTGCCAACATGGCTGAACCCTTCAAG___GTGTGGACGGAGAATGCAGACGGGTCAGGCGCTGTGAACTTCCTGACAGGCATGGGGGGCTTCCTGCAGGCGGTGGTCTTCGGGTGCACGGGGTTCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCC...___...CCAC...___...G...___...CAAGTGCCT...___TCTAGGGACAGGAAGATGGTTGGCG	in-frame	DVRttNLaIYEAVTSPQGPAMTrSMFAVGWMELKDAVRARGLLDRSFANMAEPFKVWTENADGSGAVNFLTGMGGFLQAVVFGCTGFs|GQPPNYEMLKEEQEVAMLGaPHNPAPPtSTVIHIRSETSVPDHVVWSLFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAY	.
TALL_VC080	ATHL1	IFITM2	+/+	+/+	11:292677	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	1	1567	2115	low	.	.	mismatches(1)	GTTCCACCCAGAAGCCGCCAGGGCCATCCTGGAGTACCGCATCCGCACGCTGGACGGGGCCCTGGAGAACGCCCAGAACCTGGGCTACCAG___GGAGCCAAGTTTGCCTGGGAGAGTGCAGACTCCGGCCTAGAGGTTTGCCCTGAGGACATTTACGGAGTCCAGGAGGTCCACGTCAACGGGGCCGTGGTGTTGGCCTTCGAGCTGTACTACCATACCACCCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCCACCGCCAAGTGCCTGAA	out-of-frame	FHPEAARAILEYRIRTLDGALENAQNLGYQGAKFAWESADSGLEVCPEDIYGVQEVHVNGAVVLAFELYYHTTQ|rpasqlrdaqggagsgyaggapqpcspdvhrdphpqrdlra*	.
TALL_VC080	ATHL1	IFITM2	+/+	+/+	11:294478	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	3	1762	2115	low	.	.	duplicates(1),mismatches(1)	CTCCCTGTTGCCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___ACTGGCtCC	out-of-frame	SLLP|aaslpttrcsrrsrkwlcwgrpttllprrpp*	.
TALL_VC080	ATHL1	IFITM2	+/+	+/+	11:292095	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	1470	2115	low	.	.	low_entropy(1),mismatches(1)	ACTGGGaCCACGTCTTCTGGGcCCAG___...CAGAAGACGCCAGCGATGGAGCTCTGCCGGGGCGGAATGTGGCCAGGAGGGGCGGGAGCAGTGACGGCCTGTCCGGCGCTAGAACGAGGGACCGTGCTCTCAGGACCTCTGGATGTTCCCGAGTATCCTGATGTTCCACCCAGAAGCCGCCAGGGCCATCCTGGAGTACCGCATCCGCACGCTGGACGGGGCCCTGGAGAACGCCCAGAACCTGGGCTACCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCCACCGCCAAGTGCCTGAA	out-of-frame	rrrqrwssagaecgqegreq*rpvrr*negpcsqDLWMFPSILMFHPEAARAILEYRIRTLDGALENAQNLGYQ|rpasqlrdaqggagsgyaggapqpcspdvhrdphpqrdlra*	.
TALL_VC080	ATHL1	IFITM2	+/+	+/+	11:291113	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	1299	2115	low	.	.	mismatches(1)	CTGCGCCAGGCCCTGCGaGGCTCCCTCTgCTACCTGCTCAtTGCCtTGCCCCAcCCCAAGGCCCgAGGcTACATCTGCCATGGCaTCAGTCCTGGGGGCCTCTCCAATGGGAGCCGTGAGGAATGCTACTGGGGCCACGTCTTCTGGGACCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATaCTGGGGGcGCCCCACAACCCTG...CCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCCACCGCCAAGTGCCTGAA	out-of-frame	LRQALRGSLcYLLiALPhPKArGYICHGiSPGGLSNGSREECYWGHVFWDQ|rpasqlrdaqggagsgytggapqp	.
TALL_VC080	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	6	7	0	50	26	medium	.	.	duplicates(4),low_entropy(1)	CGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGG	.	.	.
TALL_VC080	MXI1	AP000692.9	+/.	+/.	10:110261062	21:36360431	intron	intron	translocation/3'-3'	upstream	upstream	0	1	1	0	37	medium	.	.	.	.	.	.	.
TALL_VC080	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	8	0	76	102	low	.	.	mismatches(1)	GGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCC	out-of-frame	MPQTCDGTGQMHLGr|sqrttsmcqtwarclrlmfhptcltcpalpttsctlptwapalpplplapfqnc	.
TALL_VC080	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	8	0	1	47	102	low	.	.	.	GGCAGATGCATCTGGGAAG___AGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG	out-of-frame	GRCIWEEQHQFWPLHPDLEHQSCLGANDHTSQL*AGLQEAGRGLGGPLIPPWGWPGNTLVAVSIFLLLTGPTYLLFKLSPr|sqrttsmcqtwarclrlmfhptcltcpalpttsctlptwapalpplplapfqncppstlr*	.
TALL_VC080	IL9R	WASH6P	+/+	+/+	X:156004565	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	1	93	102	low	.	.	duplicates(1),read_through(9)	CAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG	out-of-frame	MGLGRCIWEVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|vpenyfyvpdlgqvpeidvpsylpdlpgiandlmyiadlgpgiapsapgtipelptfhtevaeplka	.
TALL_VC080	IL9R	WASH6P	+/+	+/+	X:156001508	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	49	102	low	.	.	.	GGCAGATGCATCTGGGAAG___TAACTGCTGCAAGAACGGACAGACACTGCTGCAGAGAACTTGCCACGGTGTTTCATGCTGTGGCTGGTGGTTCCAGGCTGCACGCTCCATTCTAGGAAAGG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAA	out-of-frame	QMHLGSNCCKNGQTLLQRTCHGVSCCGWWFQAARSILGK|gprelllcarpgpga*	.
TALL_VC080	EEF1A1P6	DNAH11	-/-	+/-	7:22510657	7:21884237	exon	intron	deletion/5'-5'	upstream	downstream	0	0	9	1173	0	low	.	.	duplicates(1),low_entropy(2),mismappers(1),mismatches(18)	AATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCT...|...GTAGCCAACC	.	.	.
TALL_VC080	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	2	0	115	320	low	.	.	duplicates(1)	GGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC080	ARAP1	PDE2A	-/-	-/-	11:72687688	11:72642326	splice-site	splice-site	deletion/read-through	upstream	downstream	2	4	0	532	5	low	.	.	mismatches(1)	CGCTACTTCATCCTCAACAGCAGCTGCTTGCGGCTCTACAAGGAGGTCCGG___AGTCACCGGCCTGAGAAGGAGTGGCCTATTAAGAGTCTCAAAGTCTACCTGGGAGTGAAGAAGAAACTCAGGCCACCCACCTG___CTGGGGCTTCACAGTGGTGCATGAGACAGAGAAACATGAGAAGCAGCAGTG|GCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAGCCGCCGCCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG___CCAGCCTGGACCCCCTTGCAAAGGAGCCAGGACCCCCAGG...___GTGCACTGTGGCCAGCTGAGTGATAATG	in-frame	RYFILNSSCLRLYKEVRSHRPEKEWPIKSLKVYLGVKKKLRPPTCWGFTVVHETEKHEKQQw|RGQQVFLKPDEPPPPPQPCADSLQPAWTPLQRSQDPQ	.
TALL_VC080	ARAP1	PDE2A	-/-	-/-	11:72694980	11:72668426	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	348	8	low	.	.	mismatches(1)	CAGGACTACAAGGCTGGCCGTGTGGTGGAAGACCTCATTAACCACTATGTGGTGGTGTTTAGT___GTGGATGAGGAAGAGCTCAGGAAGCAGCGGGAGGAGATCACTGCCATTGTGAAGATGCGCGTG...CACCCTGGAGATCCTGGATCGCCGGAACGTGGGCATCAGGGAGAAGGACTATTGGACCTGCTTTGAGGTCAACGAGAGGGAGGAGGCAG|AAGTTTACAGCTTCCTGAGCACTGTTTCCACACCTG	out-of-frame	TLEILDRRNVGIREKDYWTCFEVNEREEA|evysflstvstp	.
TALL_VC080	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	3	2	0	43	21	low	.	.	duplicates(1),low_entropy(1)	GTTGTCCTGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGACATGACCCGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCC	out-of-frame	VVLLEAGDGGPAVAVGHDPHAEHAHRVPLPAYHPQHE|vtqealtwspqnsinssrcs*	.
TALL_VC080	C9orf171	EEF1A1P5	+/.	+/.	9:132527029	9:133020533	intron	exon	deletion	downstream	upstream	0	0	5	1	304	low	.	.	low_entropy(1),mismatches(7)	.	.	.	.
TALL_VC080	EEF1A1P5	VAV2	+/+	-/+	9:133020522	9:133907502	exon	intron	deletion/5'-5'	downstream	upstream	0	0	5	397	0	low	.	.	mismatches(8)	GACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTC...TGGGGACAATGTGGGCTTCAAtGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTAT...|...CTGGTTCAGC	.	.	.
TALL_VC080	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	0	10	7	low	.	.	.	CTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAG	out-of-frame	LRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggps	.
TALL_VC080	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	0	4	0	39	128	low	.	.	.	CAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTAC?TTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAgTGGA	.	.	.
TALL_VC080	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	8	80	low	.	.	.	GGTTGCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___GTGGCTTCCTGTTTGAAGGGCTCTCAGATGATGAGGATGACTTTCACCCA___AGCCAGTGGCAGCCCCAGCTGCAGCAGCTACGTGAC	.	.	.
TALL_VC080	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74458896	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	8	61	low	.	.	.	GACAGAAAGGTTGCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|GGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCACCTGGCGGTGAAGCTGGCTGACCAGCCACTTACTCCAAAGTCTATTCTTCGGTTGCCAG...GGGGGCTATAGTATTTCATTTCTGAAGCAGCTTATTGCTGGCAAACTCCAGGAGTCTGTTCCAGACCCTGAGCTGATTG___ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGAC	.	.	.
TALL_VC080	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	275	42	low	.	.	.	CGTTCTTGCTCTTCcAGGGCGAGAA___GATCACCATTA-CAAGGACACCAAGGTACCCAAtGCCTGCTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTA...GCGAGATCCACCTGCGGCTGGAAGTGTGGCCAGGGGCCCGGGCCTGCCGGCTACGCTGCTCTGTGCTGGAGGCCAG___GGATCTGGCCCCAAAGGACCGCAATGGCACATCTGACCCCTTCGTCCGAG	out-of-frame	FLLFqGEKITItrtprypmpayspstkktthwetslnhvpaspspsavivsflrppqprflyslqn|slaaatptas*	.
TALL_VC080	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	275	42	low	.	.	.	CGTTCTTGCTCTTCcAGGGCGAGAA___GATCACCATTA-CAAGGACACCAAGGTACCCAAtGCCTGCTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTA...GCGAGATCCACCTGCGGCTGGAAGTGTGGCCAGGGGCCCGGGCCTGCCGGCTACGCTGCTCTGTGCTGGAGGCCAG___GGATCTGGCCCCAAAGGACCGCAATGGCACATCTGACCCCTTCGTCCGAG	out-of-frame	FLLFqGEKITItrtprypmpayspstkktthwetslnhvpaspspsavivsflrppqprflyslqn|slaaatptas*	.
TALL_VC080	EEF1A1P13	TRIO	-/-	+/-	5:14652551	5:14503294	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	67	0	low	.	.	low_entropy(1),mismappers(1),mismatches(4)	ATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTAT...|...GGCTGGAGTTTCTG	.	.	.
TALL_VC080	GYPE	RP13-578N3.3	-/-	+/-	4:143876746	4:143841053	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	0	1	2	89	7	low	.	.	duplicates(1),mismappers(1),mismatches(2)	CAGCATCAAGTACCACTGGTGTGGCAATGCACACTTCAACCTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATG___GGATAACACTCATTAcTTGGTGtGCtATGGCTtGTGTTATTT...GGTGATGCTTGTTGTTGTTGGAATGATCATCTTAATTTCTTACTGTATTCGATGACTGATAAAG|AAAGAGCATGCTCCCTGTGTTGATGCAGTCGCCCCCCTCCCGGGCTTTGTTCTACACATGGATGTAACCTGCCACACACTGGAAGACACTAAGTTTGGAACCCATGTAATGTTCAACTAGTCAAACAAGGGAAAATAGCATCAACCTTACCATTAATTTA	out-of-frame	VMLVVVGMIILISYCIR*lik|kehapcvdavaplpgfvlhmdvtchtledtkfgthvmfn*	.
TALL_VC080	NEU4(26250),AC114730.2(717)	RTP5	./+	+/+	2:241843663	2:241871714	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	160	198	low	.	.	duplicates(1)	GCACCGGCAGTGCCCCTCCGGCCACACCCCGGCCAGGTTTTCTAAGGCTGGACAAACACAGGGGCCCCCACTGGTGGGTGCGGCAGACTGACTGGGGTCAGAGGTATGGGGAGAACACGCGG...AGCGATTGTGCCACAGTCGAGGGGGCCACGGCGATGGTGTGGTCACACGGCCTCGGTCACCCTCCAGAGGACCCTCCACATCCTGAACTCTCCAGAATCTCAGGAGCCTCACCCAGACTCAGAGCGAG|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGTGCAGGCTGTGCC	.	.	.
TALL_VC080	MTND4P12	CTB-113I20.2(56922),CTB-113I20.1(19430)	-/-	./-	5:134926997	5:134062484	exon	intergenic	deletion	upstream	downstream	0	0	3	93	9	low	.	.	mismatches(3)	AAAACAcATAGCCTACCCCTTCCTTGTACTATCCCTaTGAGGCATAATTATAACAAGCTCCATCTGCCTaCGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATtCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAaTCGCCCACGGACTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGcACtCACAGTCGCATCATAATcCTCTCTCAAGG...|...GCAAACTTCC	.	.	.
TALL_VC080	SPNS3	SPNS2	+/+	+/+	17:4486583	17:4513247	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	196	28	low	.	.	mismappers(1)	CCTGGAGAGAGACGAGACCCGGGCCTGGCAGCCTGTCACAG|GCGTCCTTCTGGACATCCAGCAGCACTTTGGGGTCAAGGACCGAGGCGCCGGCCTGCTGCAGTCAG___TGTTCATCTGTAGCTTCATGGTGGCTGCCCCCATCTTCGGCTACCTGGGCGACCGCTTCAACAGGAAGGTGATTCTCAGCTGCGGCATTTTCTTCTGGTCGGCCGTCACCTTCTCCAGCTCCTTCATTCCCCAGCAG___TACTTCTGGCTGCTGGTCCTGTCCCG	in-frame	LERDETRAWQPVT|gVLLDIQQHFGVKDRGAGLLQSVFICSFMVAAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQYFWLLVLS	.
TALL_VC080	SPNS3	SPNS2	+/+	+/+	17:4453205	17:4513247	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	137	28	low	.	.	mismappers(1)	CTTGGGGGCAGAAGCTGCGAGGAGGTACAAGAAAGTCATTCCAGGAGCTGAGCCCCTCATCTGCGCCTCCAGCCTGCTTGCCACAGCCCCCTGCCTCTACCTGGCTCTCGTCCTGGCCCCGACCACCCTGCTGGCCTCCTAT|GCGTCCTTCTGGACATCCAGCAGCACTTTGGGGTCAAGGACCGAGGCGCCGGCCTGCTGCAGTCAG___TGTTCATCTGTAGCTTCATGGTGGCTGCCCCCATCTTCGGCTACCTGGGCGACCGCTTCAACAGGAAGGTGATTCTCAGCTGCGGCATTTTCTTCTGGTCGGCCGTCACCTTCTCC	out-of-frame	LGAEAARRYKKVIPGAEPLICASSLLATAPCLYLALVLAPTTLLASY|asfwtssstlgsrteapaccsqcssvaswwlppssatwatastgr*	.
TALL_VC080	STAG3L3	CALN1	-/-	-/-	7:72980899	7:72389706	intron	intron	deletion	upstream	downstream	0	0	2	158	4	low	.	.	duplicates(1),mismappers(2),mismatches(6)	GGCACAATCTCAGCTCATTGCAACCTCCACCTCCCAGGTTCAAGCTATTCTCCTGCTTCAGCCTCCCAAGTgGCTGGGACTACAGGTGCGAACCACCACGACCAGGTAATTTTTGTATTTTTAGTAGAGATGAGGTTTCACC?CGTTGGCCAGGCTGGTCTCAAACTGCTGAC|CTCAGGTGATCCAC	.	.	.
TALL_VC080	C16orf45	PKD1P1	+/+	+/+	16:15604145	16:16322130	intron	intron	deletion	downstream	upstream	0	0	2	10	36	low	.	.	mismappers(1),mismatches(3)	TGATAGTTCT...|...CGGACAGTCAGTGTCCCAGCCCGGGCTTGGCTCTCATGGCATGCAGAGCCCCGGGCACCTCCTCTCCTCTGTGCCCCGCGTGGGACTCTCCAGCCCGACGGGAGGTGTGTCCAGGAGGCGACAGG	.	.	.
TALL_VC080	ALDH4A1	TMCO4	-/.	-/.	1:18875077	1:19709044	intron	intron	deletion	downstream	upstream	0	0	2	3	0	low	.	.	duplicates(1)	.	.	.	.
TALL_VC080	RRP12	SLIT1	-/-	-/-	10:97362923	10:97111141	intron	intron	deletion/read-through	upstream	downstream	0	0	2	11	2	low	.	.	mismappers(1),mismatches(1)	TTTTAAtGCCTCAATTCCTGATCTGTAAAGTGGGGTTATAAATAGACCACCTGGTGGAGaCATTGGGACAGTTTGGTAAGATTGGGCGTGTAAAGTGCATTAGCATAGTGCCTGAAGTGTTAC...|...CCCAGCTCACTGC	.	.	.
TALL_VC080	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	1	0	19	63	low	.	.	mismatches(1)	TCCGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAAC	out-of-frame	RDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGK	.
TALL_VC080	NFATC3	SLC7A6	+/+	+/+	16:68221385	16:68266593	intron	splice-site	deletion/read-through	downstream	upstream	0	1	1	37	34	low	.	.	mismappers(1),mismatches(2)	ATGATTAACACTCGGCTCAAGTTATTGCTAAAG|AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTT	.	.	.
TALL_VC080	NLRP1	RPN1	-/-	-/-	17:5530481	3:128630143	splice-site	splice-site	translocation	upstream	downstream	1	0	1	151	293	low	.	.	.	GAAGCGGTGACCGTTGAGATTGAATTCTGTGTGTGGGACCAGTTCCTGGGTGAGATCAACCCACAGCACAGCTGGATGGTGGCAGGGCCTCTGCTGGACATCAAGGCTGAGCCTGGAGCTGTGGAAGCTGTGCACCTCCCTCACTTTGTGGCTCTCCAAG|ACCATCCTTCCTGCTGCTGCCCAGGATGTTTATTACCGGGATGAGATTGGCAATGTTTCTACCA	out-of-frame	EAVTVEIEFCVWDQFLGEINPQHSWMVAGPLLDIKAEPGAVEAVHLPHFVALQ|dhpscccpgcllpg*	.
TALL_VC080	FNDC3A	MYCBP2	+/+	-/-	13:49006289	13:77217957	splice-site	splice-site	inversion	downstream	downstream	0	1	1	21	13	low	.	.	.	CCACTACTGGATACAACTCAGATCTTAAGTAGTGATATTTCTCTTTTGTCTGCCCCTATTGTAAGTGCAGATGGAACACAACAG|GGGATGTCCCACTCTTGTTCAAGCATTGCCAGGCCCTAGCACACAAGTCACTGCAGGCAGCAACCATACGGCAGTACTTTTAATGGATGGACAGGTCTTCACATTTGGAAGTTTTTC	out-of-frame	PLLDTTQILSSDISLLSAPIVSADGTQQ|gmshscssiarp*	.
TALL_VC080	SUN1	PRPF6	+/+	+/+	7:866067	20:63983047	splice-site	splice-site	translocation	downstream	upstream	0	1	0	190	94	low	.	.	.	CCGCTGTGGTACTTCTCGCAGTCCCCGCGCGTGGTCATCCAG|CGCCACTGGCTTCACCACGCGGTCAGACATTGGGCCCGCCCGTGATGCAAATGACCCTGTGGATGATCGCCATGCACCCCCAGGCAAGAGAACCGTTGGGGACCAGATGAAGAAAAATCAGGCTGCTGACGATGAC	out-of-frame	PLWYFSQSPRVVIQ|rhwlhhavrhwarp*	.
TALL_VC080	CTBP1	MAEA	-/-	+/+	4:1241325	4:1339074	splice-site	splice-site	inversion	upstream	upstream	0	1	0	98	198	low	.	.	.	CGAGACAGGACGCGGTTCTGCCTGGGGATCCTGAAGATAAAAAGCTTTGAAAAGTCGAATTCATGGTCGTGGAAGCTGAGCCCATATTAAGAGATGTCAG|TCTCTGCTTTCTATCCGTCA...CGTCAACCATTTGATGCTTCTGAAAAGTACTTTCAACTTGCGAAGGAAACTCTTCTTTAAAGACTGACCTAAACACCGAGGGAAACTTAAGAACGTTTAAAATATAGGAGTCCGTGATTTCCC	out-of-frame	MS|vsafyp	.
TALL_VC080	CTDP1	NFATC1	+/+	+/+	18:79680261	18:79410403	splice-site	splice-site	duplication	downstream	upstream	0	1	0	99	35	low	.	.	.	CGGGCGTGGTGCGGGAGCTGTGCGCGCAGCCGGGCCAGGTGGTCGCCCCAGG|AACACTATGGCTATGCATCCTCCAACGTCAGCCCCGCCCTGCCGCTCCCCACGGCGCACTCCACCCTGCCGGCCCCGTGCCACAACCTTCAGACCTCCACACCGGGCATCATCCCGCCGGCGGATCACCCCTCGGGGTACG	out-of-frame	GVVRELCAQPGQVVAPg|tlwlcilqrqprpaaphgalhpagpvpqpsdlhtghhpaggsplgv	.
TALL_VC081	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	7	11	1	65	93	high	.	.	duplicates(1),low_entropy(3),mismappers(1),mismatches(4)	GGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTtGG...GTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCC	.	.	.
TALL_VC081	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	9	8	0	36	22	high	.	.	duplicates(1),low_entropy(1),mismatches(1)	CCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCC	out-of-frame	NSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL_VC081	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	14	0	47	41	high	.	.	duplicates(2),low_entropy(2)	CAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCC	.	.	.
TALL_VC081	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	12	2	72	47	high	.	.	low_entropy(3)	GGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAG	.	.	.
TALL_VC081	PICALM	MLLT10	-/-	+/+	11:85974708	10:21670449	splice-site	splice-site	translocation	upstream	upstream	4	7	2	229	53	high	.	.	duplicates(2)	CTGGGGGATCTAACTGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCgGCAACAATG___GCACCCCCTGTAATGGCCTATCCTGCTACTACACCAACAGGCATGATAGGATATGGAATT___CCTCCACAAATGGGAAGTGTTCCTGTAATGACGCAACCAACCTTAATATACAGCCAGCCTGTCATGAGACCTCCAAACCCCTTTGGCCCTGTATCAGGAGCACAG|ACTTATACAAGCACTAGCAACAACTCTATATCTGGATCATTGAAGCGCTTGGAAGATACTACTGCACGATTTACAAATGCAAATTTCCAGGAAGTCTCTGCACACACCTCTAGTGGAAAAGATGTTTCAGAGACTAGAGGGTCAGAGGGCAAAGGGAAGAAATCTTCAGCTCACAGCTCAGGTCAAAGGGGAAGAAAGCCTGGTGGTGGAAGAAATCCAGGAACAACTGTGTCAGCAGCTAGCCCTTTTCCTCAAG___GCAGTTTTTCAGGAACTCCAGGCAGTGTAAAGTCATCTTCTGGAAGTTCAGTGCAGTCTCCC	in-frame	GGSNWQPKVAPTTAWNAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVMRPPNPFGPVSGAQ|TYTSTSNNSISGSLKRLEDTTARFTNANFQEVSAHTSSGKDVSETRGSEGKGKKSSAHSSGQRGRKPGGGRNPGTTVSAASPFPQGSFSGTPGSVKSSSGSSVQS	.
TALL_VC081	PICALM	MLLT10	-/-	+/+	11:85974708	10:21681332	splice-site	splice-site	translocation	upstream	upstream	0	1	0	229	80	low	.	.	.	CTCCAAACCCCTTTGGCCCTGTATCAGGAGCACAG|AAATTTCCATGCAGTATCGGCATGATGGAGCTTGCCCAACAACTA___CGTTCTCAGAGTTGCTGAATGCAAaACACAACG___ACAGAGGTGACAGTTCTACACTAACAAAGCAAGAACTTAAATTCATAG___GTATTTATAACAGCAATGATGTAGCAGTATCGTTTCCAAATGTAGTATCTGGCTCGGGATCTAGTACTCCTG	out-of-frame	PNPFGPVSGAQ|kfpcsigmmelaqqlrsqsc*	.
TALL_VC081	PICALM	MLLT10	-/-	+/+	11:85974708	10:21713772	splice-site	splice-site	translocation	upstream	upstream	0	1	0	229	99	low	.	.	.	GGAAGTGTTCCTGTAATGACGCAACCAACCTTAATATACAGCCAGCCTGTCATGAGACCTCCAAACCCCTTTGGCCCTGTATCAGGAGCACAG|GTATTTATAACAGCAATGATGTAGCAGTATCGTTTCCAAATGTAGTATCTGGCTCGGGATCTAGTACTCCTGTCTCCAGCTCTCACTTACCTCAGCAGTCTTCTGGGCATTTGCAACAAGTAGGAGCGCTCTCTCCCTCAGCTGTG	out-of-frame	GSVPVMTQPTLIYSQPVMRPPNPFGPVSGAQ|vfitamm*	.
TALL_VC081	CTC-479C5.12	LCAT	-/-	-/-	16:67934569	16:67940478	splice-site	splice-site	duplication	upstream	downstream	8	3	2	1192	239	high	.	.	duplicates(3)	CTGGTGGAAGCCGTCACCGCCGGGATCTTGGGTGACCTGGGCTCCGGGGGCAATGTGGACGCATGTGTGATCACAAAGACTGGCGCCAAGCTGCTGCGGACACTGAGCTCACCCACAGAGCCCGTGAAGAG___GTCTGGCCGCTACCACTTTGTGCCTGGAACCACAGCTGTCCTGACCCAGACAGTGAAGCCACTAACCCTGGAGCTAGTGGAGGAAACTGTGCAGGCTATGGAG|GTGACAACCAGGGCATCCCCATCATGTCCAGCATCAAGCTGAAAGAGGAGCAGCGCATAACCACCACCTCCCCCTGGATGTTTCCCTCTCGCATGGCGTGGCCTGAGGACCACGTGTTCATTTCCACACCCAGCTTCAACTACACAGGCCGTGACTTCCAACGCTTCTTTGCAGACCTGCACTTTGAG	.	.	.
TALL_VC081	CTC-479C5.12	LCAT	-/-	-/-	16:67934797	16:67940478	splice-site	splice-site	duplication	upstream	downstream	5	13	3	2492	239	medium	.	.	.	CTCTGGTCAGGACGCGGCCCTGGCGGTGCTAGAAGACCGGTTCCAGCCGAACATGACG___CTGGAGGCTGCTCAGGGGCTGCTGGTGGAAGCCGTCACCGCCGGGATCTTGGGTGACCTGGGCTCCGGGGGCAATGTGGACGCATGTGTGATCACAAAGACTGGCGCCAAGCTGCTGCGGACACTGAGCTCACCCACAGAGCCCGTGAAGAG|GTGACAACCAGGGCATCCCCATCATGTCCAGCATCAAGCTGAAAGAGGAGCAGCGCATAACCACCACCTCCCCCTGGATGTTTCCCTCTCGCATGGCGTGGCCTGAGGACCACGTGTTCATTTCCACACCCAGCTTCAACTACACAGGCCGTGACTTCCAACGCTTCTTTGCAGACCTGCACTTTGAGGAAGGCTGGTACATGTGGCTGCAGTCACGTGACCTCCTGGCAGGACTCCCAGC	.	.	.
TALL_VC081	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	7	4	1	81	29	high	.	.	duplicates(1),mismappers(2),mismatches(1)	GGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTtGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCC	out-of-frame	AVGFTREEWQFLDQSQKVLYKEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC081	MLLT10	SYTL2	+/+	-/-	10:21651768	11:85925513	splice-site	intron	translocation	downstream	downstream	0	2	1	19	13	high	.	.	.	CAGAAACACAAGAAGCAGCCAGAACCATCACCTGCATTGGTTCCATCCTTGACTGTTACTACAGAAAAA|GTCTGCTGGAGTTTGCTGGAGGTCTACTCCAGATCCTGTTTGCCTGGGTATCACCAGTGGAGGCTGCAGAGCAGCAAAGATTGCTGCCTCTTCCTT...CCCAGAGAGGCGCCCGTCAGATGCCAGCCAGAGCTCTCCTGTATGAG___GTAGGTGATGCTCTGATGCTGCTGCCTCTTATGAATTGACGACAGGTGCAGAGAGAGAATAAACTGTGTCTAAGACTGGACCAGAGAGTGAGTGTGCTGGAAGCCACCATAGGAACAAGCGACCTGTTTGGCAAGGAATACAGCATCCTTCTGAGAGCCTCTTCTCGACACTATCCCAC	out-of-frame	QKHKKQPEPSPALVPSLTVTTEK|vcwsllevysrsclpgyhqwrlqsskdcclf	.
TALL_VC081	MLLT10	RP11-90K17.2(1831),SLC25A1P1(9224)	+/+	./-	10:21651768	11:85925513	splice-site	intergenic	translocation	downstream	downstream	0	1	2	19	13	high	.	.	.	GGACTGCTTTGTGAAGAAGAAG___AAATATAAAGAGAAGGACAAACACAAACAGAAACACAAGAAGCAGCCAGAACCATCACCTGCATTGGTTCCATCCTTGACTGTTACTACAGAAAAA|GTCTGCTGGAGTTTGCTGGAGGTCTACTCCAGATCCTGTTTGCCTGGGTATCACCAGTGGAGGCTGCAGAGCAGCAAAGATTGCTGCCTCTTCCTTCCTCTGGAAGCTTCATCCCAGAGAGGCGCCCGTCAGATGCCAGCCAGAGCTCTCCTGTAT	out-of-frame	GLLCEEEEI*REGQTQTETQEAARTITCIGSILDCYYRK|sllefaggllqilfawvspveaaeqqrllplpssgsfiperrpsdasqsspv	.
TALL_VC081	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	15	26	0	124	67	medium	.	.	duplicates(3),low_entropy(2),mismappers(4)	GCCAGGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTC...CAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTT...___...TCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAG	.	.	.
TALL_VC081	PSMB10	LCAT	-/-	-/-	16:67934797	16:67940478	splice-site	splice-site	duplication	upstream	downstream	4	13	1	2492	239	medium	.	.	.	GCCACGTGGGTGCATCGCTGATCGTGGGCGGCGTAGACCTGACTGGACCGCAGCTCTACGGTGTGCATCCCCATGGCTCCTACAGCCGTCTGCCCTTCACAGCCCTGG___GCTCTGGTCAGGACGCG...GGAAGCCGTCACCGCCGGGATCTTGGGTGACCTGGGCTCCGGGGGCAATGTGGACGCATGTGTGATCACAAAGACTGGCGCCAAGCTGCTGCGGACACTGAGCTCACCCACAGAGCCCGTGAAGAG|GTGACAACCAGGGCATCCCCATCATGTCCAGCATCAAGCTGAAAGAGGAGCAGCGCATAACCACCACCTCCCCCTGGATGTTTCCCTCTCGCATGGCGTGGCCTGAGGACCACGTGTTCATTTCCACACCCAGCTTCAACTACACAGGCCGTGACTTCCAACGCTTCTTTGCAGACCTGCACTTTGAGGAAGGCTGGTACATGTGGCTGCAGTCACGTGACCTCCTGGCAGGACTCCCAGC	out-of-frame	EAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKr|*	.
TALL_VC081	PSMB10	LCAT	-/-	-/-	16:67935420	16:67940478	splice-site	splice-site	duplication	upstream	downstream	2	1	0	1561	239	medium	.	.	.	CACGTGGGTGCATCGCTGATCGTGGGCGGCGTAGACCTGACTGGACCGCAGCTCTACGGTGTGCATCCCCATGGCTCCTACAGCCGTCTGCCCTTCACAGCCCTGG___GCTCTGGTCAGGACGCGGCCCTGGCGGTGCTAGAAGACCGGTTCCAGCCGAACATGACG|GTGACAACCAGGGCATCCCCATCATGTCCAGCATCAAGCTGAAAGAGGAGCAGCGCATAACCACCACCTCCC...GGTACATGTGGCTGCAGTCACGTGACCTCCTGGCAGGACTCCCAGCACCTGGTGTGGAAGTATACTGTCTTTACGGCGTGGGCCTGCCCACGCCCCGCACCTACATCTACGACCACGGCTTCCCCT	out-of-frame	HVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMT|vttraspscpass*	.
TALL_VC081	RP11-345J4.3(2068),RP11-345J4.1(5163)	RP11-231C14.4	./.	-/.	16:29469901	16:29505237	intergenic	intron	deletion/read-through	downstream	upstream	3	13	0	86	64	medium	.	.	low_entropy(1),mismappers(2),mismatches(1)	.	.	.	.
TALL_VC081	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	9	5	1	333	242	medium	.	.	duplicates(3),low_entropy(1),mismappers(3),mismatches(1)	CAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAgCTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCG...GGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATGGGCCACCATGTGCCAGCACCATGCCTCCAAGAGAAAGAGTCATCCCACTGACCTGTGG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL_VC081	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	8	2	259	394	medium	.	.	duplicates(1),low_entropy(1)	CCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAG...GGAACTCTTTaCTCCCTCCACCACCCCCCATGCCAGGGCCAAGACTGGGACCAGGAAAG___CCAGGTCTAAAATTCAATGGCCCACCACCGCCACCGCCACCACCACCACCCCACTTACTATCATGC...AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATAT	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC081	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	38	394	low	.	.	duplicates(2),read_through(11)	CAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAgAGTcGG	out-of-frame	QEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC081	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	5	5	1	30	22	medium	.	.	duplicates(1),mismappers(1)	AAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGGGCTCTA	.	.	.
TALL_VC081	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	4	2	0	20	62	medium	.	.	duplicates(1),low_entropy(1),mismatches(4)	GGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGC	.	.	.
TALL_VC081	LATS2(16772),RPS12P23(15999)	SAP18	./+	+/+	13:21078319	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	2	3	1	43	2296	medium	.	.	low_entropy(1),mismatches(3)	CTCAGAGACTACGAAGCCCTTCAGATGGAAATGGTCATCTCCCAACAGCCTCTCTGGACCtCTGCCTGCAAGCCCGGCCCACACATCTTGGACCCAGGCTGGAGACACAGACAGCCAGGTGgTGATGCCCACGCGCAGCTCCAAGACCCCGGGGAGCCTCCGCCAGGCCGGAACCTGCGCCAGGCTTCTCTGGAACCTTCTCTCCAGGACGCTCTTCTGCGGTTACTGAAAAAGGGAGTCTACATGAATTAATAAGTGAAG|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTTGCAGATCTACACTTG___GATGGATGCAACtTTGAAAGAACTGACAAGCTTAGTAAAAGAAGTCTACCCAGAAGCTAGAAAGAAGGGCACTCACTTCAATTTTGCAATCGTT	.	.	.
TALL_VC081	IPPKP1(10925),FAS-AS1(10975)	SAP18	./+	+/+	13:21115296	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	4	2	0	50	2296	medium	.	.	mismappers(1)	GAAAAAGGGAGTCTACATGAATTAATAAGTGAAG___...GGGAAGCCACGTG___...GAGGCAACAAGAAATCAACATcCTGTTAGCCAGGAAGAAGGCCCTCACCAAGAACTCCAGCCATGCTGACATCCTGATCTCTGACTTTCAGGTTCCAGACCT|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTTGCAGgTCTACACTTGG	.	.	.
TALL_VC081	ABR	YWHAE	-/-	-/-	17:1179667	17:1365058	splice-site	splice-site	duplication	upstream	downstream	0	3	1	34	778	medium	.	.	.	GGAGGGTTTTGGGGGCTCCCGCCCCGCCCTCGCCCCTGCCCCGGCCGCCCCGCGCTCCTCCCGGGGACCTGGTTCCCGGCCTCCTCGCCCCTCCGCcCTCGCAACTTCGGCCTCCCCCGGCTCCC...CCGCTCAGCCACCGGGGCCTGCCGCGCCTGTCCTGGATCGACACCCTCTACAGCA|AAATGGTGGAGTCAATGAAGAAAGTAGCAGGGATGGATGTGGAGCTGACAGTTGAAGAAAGAAACCTCCTATCTGTTGCATATAAGAATGTGATTGGAGCTAGAAGAGCCTCCTGGAGAATAATCAGCAGCATTGAACAGAAAGAAGAAAACAAGGGAGGAGAAGACAAGCTAAAAATGATTCGGGAATATCGGC	in-frame	PLSHRGLPRLSWIDTLYS|kMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR	.
TALL_VC081	ABR	YWHAE	-/-	-/-	17:1228793	17:1365058	splice-site	splice-site	duplication	upstream	downstream	0	4	0	54	778	low	.	.	.	CACAGCTCGCCGGAGAGAGACAGCGACGGCAGCCGGCACAGCTCCGACCGCGAGGACGACTTCTCCGCAG|AAATGGTGGAGTCAATGAAGAAAGTAGCAGGGATGGATGTGGAGCTGACAGTTGAAGAAAGAAACCTCCTATCTGTTGCATATAAGAATGTGATTGGAGCTAGAAGAGCCTCCTGGAGAATAATCAGCAGCATTGAACAGAAAGAAGAAAACAAG...AAAGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAACACCTCATTCCAGCAGCTAACACTG___GAAAGGGGACTACCACAGGTATCTGGCAGAATTTGCCACAGGAAACGACAGGAAGGAGG	.	.	.
TALL_VC081	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	7	88	medium	.	.	.	CAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAA	.	.	.
TALL_VC081	SPN	RP11-347C12.1	+/+	-/+	16:29667562	16:30232252	3'UTR	intron	deletion/5'-5'	downstream	upstream	2	0	1	665	16	medium	.	.	duplicates(2),mismappers(6),mismatches(2)	GAGACACTGTTGTCTTAGAGTTGTTAAAATAAGAGCCCCCATATCAGGTTTAGAAAATACTGTCACCGAACGAACGTCGCTGTCCTCAGCTCCACCTCCCTTTCCTTTGACAGATATGGTTGTTTTCTAAGCCAGGACTGGTTTTAGTCAGGTCCTGGGCGAATCCTGAAAAAAAGAGGTAGTACGGGTAAGGAAGGCACCCAACAGGGCTTTCACAATCCAGAAAATATCAAAATATAAGTGTTAAAAGAGAGGCACAGGCCGGGTGCGGTGGCTCACGCCTGTAgTCTCAGCACTTTGGGAGGCCAAGGTGGGCAGATCATGAG|GTCGGGAGTTTGAGACCAGCC	.	.	.
TALL_VC081	PXDN(28539),MYT1L(15722)	PXDN	./-	-/-	2:1773391	2:1693134	intergenic	splice-site	deletion/read-through	upstream	downstream	5	2	0	268	133	low	.	.	duplicates(1),mismappers(1),mismatches(1)	CTTTTTGGCTTGCTTTTGGGGAGGGGGCCTCTAGTTTCTAGGACCGGCCTAGGGGCATAGGAATTCCAGTTTCTACGACTGCTTTAGGGGAGGCTGAGGAGTGAGAGAGGAGAATGAGAGACCACAGCCTAGCGTCAGAGCCTTTCAGCATCCTGCAACTCAAAGAACACCACAGCCAAGGCGTGTACCTTGGGGTATCATGCTCTGAGCCCCAACATCTGCAAAG___AAGTATGTTCCTGGTCCTAGCAGCAACAAAGACAACGAAGAAGCTGATGGGTTGGCCTCAGAAGGATCTAGAGCATCAG|AGATCTTCGCTTTAACAGAATCAGAGAGATCCAACCTGGGGCATTCAGGCGGCTGAGGAACTTGAACACATT___GCTTCTCAATAATAATCAGATCAAGAGGATACCTAGTGGAGCATTTGAAGACTTGG	.	.	.
TALL_VC081	C21orf33	AP001056.1(6711),AP001057.1(18126)	+/+	./+	21:44140342	21:44183164	splice-site	intergenic	deletion/read-through	downstream	upstream	2	4	0	598	18	low	.	.	low_entropy(1),mismatches(1)	GCTGACTGAGGGTCTGGAGCTGTGCCTAGGAAGCCCCCCAGGAATAGACCCTGGTTGTGAGGCTGTCTGAGGAGGCCTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG|CTCCTGTTCCATCCCTGTCTATTTCATCTATTTCATCTGACTTCTCACCAGCTCCTGCTCCATTCCCGTCTATTTCATCTGATGTCTCACCAGCTCCTGTTCCATCCCCGTCTATGTCATCTGACTTCTCACCAGCTCCTGTTCCATCCCCGTCTATTTCATCTGACATCTCACCAGCTCCTGTTCCATTCCCG	out-of-frame	lteglelclgsppgidpgceav*ggllspgRSTFAVDGKDCKVNKEVERVLKEFHQAGKPIg|scsipvyfiyfi*	.
TALL_VC081	CTC-281F24.3	SLC13A5	+/+	-/+	17:6657783	17:6692865	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	5	0	55	28	low	.	.	duplicates(1),low_entropy(1)	GCGTCCTGAGCCTGCCTGAAGGCACCA___...AGGCCGTACTGTGGGCGACGACCCTCGAGGCCTGTTCCAGAAACACCAGGAAGAGGAGCTGGAAGAGAGAAGGAAGTTGTACCG|GCCCTGTGTGTGGTGTAGAGTTCCTAGATGACAAGACAGAGTCCATGTCCTCAAGGAATGTGCGGTTATACGAAGGATGCAGGCACAGAAACACACAAGCCCAGGGATGGAAGGGTGGAGAAACGCCACCCTCTTGACGAAGAAGAGGGCTCTGGGCAGCCTGTGGCTGGAGAAGTTACCTCGGATCCTTTAGCCAGAGCAAATCCGCCCCCTAGTAGCAGCACGATGCCCCAGGGCACTTTCTCCTGGGTTACCTcCC	.	.	.
TALL_VC081	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	0	74	92	low	.	.	.	CCAGCCTCCTGTGGCTCACAGCATTAAGATATTTAATCATCTGACATTACATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTT...TGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAG	.	.	.
TALL_VC081	RP11-973N13.2(86752),PLEKHG3(15706)	PLEKHG3	./+	+/+	14:64688396	14:64727593	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	1	10	296	low	.	.	mismappers(1),mismatches(2)	AACCAACCCAAGAGGACCTTGCTTTGGCTGAAGAGACTGAAGAGACAATCCTTTCCTTTGATTCTCAGCATTTCAGTTGGATTTAGTCTAAATGTAATGAGCTGACGCTGCTTGCATGCAGAAGGACAGAG|AATCTCCCTGGGGTGCCCTCCCCAGGCAGCAATGCCAGGATGCCTGTGTCCACCTCCCTCCACCAGGATGGCAGCCAGGAGCGGCCGGTGAGCCTGACCTCTACCACCTCCTCGTtGGGCTCCTCCTGTGACAGTCGCAGTGCCATGGAGGAGCCCAGCAGCTCCGAGGCTCCCGCCAAGAATGGGGCAGGCTCCCTGAGAAGCCGGCATCTGCCCAACAGCAACAACAACTCCAGCAGCTGGTTGAACGTGAAGGGGCCCCTCTCCCCGTTCAACAGCCGGGCAGCGG	.	.	.
TALL_VC081	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	0	4	0	29	25	low	.	.	low_entropy(1)	CTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTC...GGAAGCTGATGAGCACAGATGATCAACAGAAAATCCAAGCAG___CTGCATTTGACAAAGGTGATGATCGAAGACTTGGCAAAAA[a]GCCTATATTCAGTAGCTCGCAG___CAAAGGAAACAAGTTTCTG	out-of-frame	LFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfal	.
TALL_VC081	IKBKG	CTAG1A	+/+	+/+	X:154556376	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	91	9	low	.	.	duplicates(1)	TGGTGGgGAGACTCGGCCTGGAGAAGCTCGATCTGAAGAGGCAGAAGGAGCAGGCTCTGCGGGAGGTGGAGCACCTGAAGAGATGCCAGCAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCA	out-of-frame	VgRLGLEKLDLKRQKEQALREVEHLKRCQQ|ptdccrppptaalhqllspaafpvdvdhavlsarvfgsaslraeals	.
TALL_VC081	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	2	0	13	68	low	.	.	duplicates(1),mismappers(1)	TGATG___GCCTCCCTGGACCAGCCAACACAGACAGTGGTGATGCACCGCACTGAGCCCACTGCCCAGCAGAACCTGGCTCTGCAGCTGGCCGAGAAGCTGGGCAGCCTGGTGGAGAACAACGAACGGG...CAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAAC	out-of-frame	QQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGK	.
TALL_VC081	STAG3L2	GTF2IRD2	-/-	-/-	7:74884144	7:74836383	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	1	202	65	low	.	.	.	GAGGCCGTCAGATTACTGATACTTATCCTTAA|GGATCATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGACATTCCTCGTGTCTGCCCTCGAATCCATG___TGTAAAGAACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCATCGCAGTGTACGAAACAGACGTGTTTGTCGTCGGAACCGAGAGAGGATGCGCT	.	.	.
TALL_VC081	STAG3L2	GTF2IRD2	-/-	-/-	7:74883728	7:74843832	splice-site	intron	deletion/read-through	upstream	downstream	2	0	1	177	10	low	.	.	duplicates(1),low_entropy(1)	CTGATACTTATCCTTAA___GAACATGGAAGGGGTGCTGATGGACGTGGACTGTGAGAGCGTCTACCCCATTGTGTAGGCCTCTAATTGAGGCCTGGCCTCTGCTGTGGGTGAATTTCTGTACTGGAA|GAAATGGATTGCATGATTGTTTTGACCATTTTTCTTCATGCTAAATAAA	.	.	.
TALL_VC081	STAG3L2	GTF2IRD2	-/-	-/-	7:74883728	7:74836383	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	1	177	65	low	.	.	.	GTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGACTCTGCATGATAAG___CACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACG...AAGGGGTGCTGATGGACGTGGACTGTGAGAGCGTCTACCCCATTGTGTAGGCCTCTAATTGAGGCCTGGCCTCTGCTGTGGGTGAATTTCTGTACTGGAA|GGATCATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGAC	.	.	.
TALL_VC081	STAG3L2	GTF2IRD2	-/-	-/-	7:74883349	7:74836383	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	252	65	low	.	.	.	GGACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAG|GGATCATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGACATTCCTC	.	.	.
TALL_VC081	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	99	21	low	.	.	.	CGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCAT	out-of-frame	EQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeq	.
TALL_VC081	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	15	341	low	.	.	duplicates(1),low_entropy(1),mismappers(1)	GCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCACACTGCCCTGCACAGCAGCTCCTCTTACAGGGAGGCG___GTCTTTAAGATGCTCAGCAATAAGGAGTCTCTGGATCAGATCATTGTGGCCACCCCAGGCCTCAGCAGTG	.	.	.
TALL_VC081	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74458896	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	15	231	low	.	.	.	AAAGGTTGCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|GGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCACCTGGCGGTGAAGCTGGCTGACCAGCCACTTACTCCAAAGTCTATTCTTCGGTTGCC...ATAGTATTTCATTTCTGAAGCAGCTTATTGCTGGCAAACTCCAGGAGTCTGTTCCAGACCCTGAGCTGATTG___ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTAT	.	.	.
TALL_VC081	EEF1A1P6	DNAH11	-/-	+/-	7:22510746	7:21645235	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	236	0	low	.	.	low_entropy(3),mismappers(1),mismatches(5)	AAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATC...|...TGACATCAAAGC	.	.	.
TALL_VC081	RP3-492J12.2	ZNF831	+/+	+/+	20:59146374	20:59190984	exon	5'UTR	deletion/read-through	downstream	upstream	1	2	0	21	20	low	.	.	mismappers(1)	GGGAGAATGCTCCTGCCTCATCGGAGCCACCGGTTTTCGGGAGAGAGCGGCAGCCCCCACCTGCCTGTGGACTGAGCACTTAAAG|GTTTTCCAGCATTGTGGGCCATCCAGATGATGCGGAATGGAGGTTCCAGAACCCACCTGCCCTGCCCCTCCTGCGAGGGACCAGCCAGCTCCCACTCCTGGCCCTCCAGGGGCCCCAGGTGGCCAGGCCTCACCTCACCTGACCCTGGGCCCTGTCCTTCTGCC	.	.	.
TALL_VC081	EEF1A1P6	RAPGEF5	-/-	-/-	7:22511567	7:22332235	exon	intron	deletion/read-through	upstream	downstream	0	0	3	6439	0	low	.	.	duplicates(2),low_entropy(1),mismatches(5)	GATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGaGACTTtATCAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTG...|...TGGTAGAGAAC	.	.	.
TALL_VC081	SHQ1	RNA5SP136(36032),SHQ1(21434)	-/-	./-	3:72766613	3:72727843	intron	intergenic	deletion/read-through	upstream	downstream	1	0	1	4	5	low	.	.	mismappers(1)	CGCTGGACAACCTGGACTCAGTTATCTAGCAGGTTTCCTCCAGCTGGGGATTGATTAGACTTCAATAAAATGGCTCATGAAGTCCTTAAAAGAGGCCTGTGCTTTCAGTTCCCCCCTCCCTTCACC...CCTGCACCAGGGGCTTGGATGTGCTGAAATCTTTCCTCCTTGTTTGCCTGGTGTCTGAGGCATGAGCCCTTCCTGTGATACCTTCTCCAGTGAGTTTCTTAGAAGAG|GTGTGAGCGGAGGTGATC	.	.	.
TALL_VC081	CLECL1	CLEC2D	-/-	+/-	12:9732949	12:9696453	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	1	1	0	515	94	low	.	.	mismappers(1)	GCCATCTCAATTTACTTATCAGAAGTTTCTTTGCAGAAATATGATTGTCCCTTCAGTGGGACATCATTTGTGGTCTTCTCTCTCTTTTTGATCTGTGCAATGGCTGGAGATGTAGTCTACGCTGACATCAAAACTGTTCGGACTTCCCCGTTAGAACTCGCGTTTCCACTTCAGAGATCTG|CATCCCATACATACTTAAAACCAAGCAAAGGGTGGAGTTCCATCTTTAAAAACTAAACAGGCATTTTGGACAACACATTCTTGGCAATAGAACCTGGACAACATTTATCAAACATGGTAGGGAAAGTTCTCACTCTGCACTATAAAAAGGACAGCCAGATATCAAC	out-of-frame	AISIYLSEVSLQKYDCPFSGTSFVVFSLFLICAMAGDVVYADIKTVRTSPLELAFPLQRS|ashtylkpskgwssifkn*	.
TALL_VC081	DYM	SMAD7	-/-	-/-	18:49079267	18:48948769	intron	intron	deletion/read-through	upstream	downstream	0	0	2	14	8	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	CTACAATGTAACATTAATATTATTCAGGATACAACCCAAAATGTCCCGACATCCACAGAATCAAGAAAATGGAACACATTTTCTGCACACAGCAATCAAGTTTTCTACCCCAAGACGAACC...|...GAGTCCGAGGACG	.	.	.
TALL_VC081	ITCH	TRAPPC10	+/+	+/+	20:34462221	21:44052280	splice-site	splice-site	translocation	downstream	upstream	1	0	1	125	158	low	.	.	.	CCAGAAGTCAAGG___TCAATTAAATGAAAAGCCCTTACCTGAAGGTTGGGAAATGAGATTCACAGTGGATGGAATTCCATATTTTGTGGACCACAATAGAAGAACTACCACCTATATAGATCCCCGCACAGGAAAATCTGCCCT|GATACCGAAGTGTATAAAGCTACAGTAAAAGATGAC	out-of-frame	RSQGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTGKSAl|ipkciklq*	.
TALL_VC081	CBLB	CD47	-/-	-/-	3:105776396	3:108071182	splice-site	splice-site	duplication	upstream	downstream	1	1	0	181	607	low	.	.	.	GTCACAGGACAG___ACGAAATCTCACAAAACTGTCCCTTATCTTCAGTCACATGCTGGCAGAAATCAAAGCAATCTTTCCCAATGGTCAATTCCAGGGAGATAACTTTCGTATCACAAAAGCAGATGCTGCTGAATTCTGGAGAAAGTTTTTTGGAGACAA|TTTCATGGTTTTCTCCAAATGAAAATATTCTTATTGTTATTTTCCCAATTTTTGCTATACTCCTGTTCTGGGGACAGTTTGGTATTAAAA___CACTTAAATATAGATCCGGTGGTATGGATGAGAAAACAATTGCTTTACTTGTTGCTGGACTAGTGATCACTGTCATTGTCATTG	out-of-frame	SQDRRNLTKLSLIFSHMLAEIKAIFPNGQFQGDNFRITKADAAEFWRKFFGDn|fmvfsk*	.
TALL_VC081	USP15	TRIM24	+/+	+/+	12:62294306	7:138504290	splice-site	splice-site	translocation	downstream	upstream	0	1	0	346	90	low	.	.	.	GAAAAAATATGTTGGCTTTGACAGTTGGGACAAATACCAGATGGGAGATCAAAATGTGTATCCTGGACCCATTGATAACTCTGGACTTCTCAAAG|TTGGAGTCATTCGTTGCCCAGTTTGCAGCCAAGAATGTGCAGAGAGACACATCATAGATAACTTTTTTGTGAAGGACACTACTGAGGTTCCCAGCAGTACAGTAGAAAAGTCAAATCAG___ACCTTGAAGCAGCCATTTCTCC	in-frame	KKYVGFDSWDKYQMGDQNVYPGPIDNSGLLK|vGVIRCPVCSQECAERHIIDNFFVKDTTEVPSSTVEKSNQtlkqpfl	.
TALL_VC081	TBC1D5	SNTG2	-/-	+/+	3:17291895	2:1247327	splice-site	splice-site	translocation	upstream	upstream	1	0	0	45	128	low	.	.	.	GACGGCCTCAGCCTGGGTTTAGTAGATTATATCTTCGTAGCCATGTTACTTTACATCCGAGATGCTT___TGATCTCTAGTAACTACCAGACCTGTCTCGGCCTTCTGATGCATTACCCATTCATCGGGGATGTACACTCACTGATTCTTAAGGCTCTGTTCCTTAGAGATCCAAAG|GTTGTGCATATGGGGTGGGTAAATGAGAAACTCCAAGGAGCTGACTCCTCTCAAACCTTCAGACCCAAGTTCCTA	in-frame	DGLSLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPK|VVHMGWVNEKLQGADSSQTFRPKF	.
TALL_VC081	ZBTB20	PPP1R12C	-/-	-/-	3:115100175	19:55103568	splice-site	splice-site	translocation	upstream	downstream	0	1	0	55	181	low	.	.	.	GAGAAACTCAGCGCTGGGGAAGAAG|GTGTGGATGTGGAgGCAGCCAAGCGGGCAGAAGAGGAATTGCTCCTTCATGACACGAGGTGCTGGCTGAATGGGGGCGCCATGCCAGAGGCCCGGCACCCCCGCACAGGCGCCTCTGCCCTGCACGTGGCTGCTGCCAAGGGCTACATTGAGGTGATGAG___GTTGCTCCTTCAGGCTGGCTACGACCCAGAGCTCCGGGACGGGGACGGC	.	.	.
TALL_VC081	ZDHHC17	OSBPL8	+/+	-/-	12:76822531	12:76371584	splice-site	splice-site	inversion	downstream	downstream	1	0	0	105	245	low	.	.	.	GGAATACCACAGTCATTAGCCTTCTTCTGGAAGCTGGAGCTAATGTTGATGCCCAGAATATCAAG___GGCGAATCAGCGCTTGATTTGGCAAAACAGAGAAAAAATGTGTGGATGATCAACCACTTAC...AGAGGCAAGGCAAGCAAAAGGATATGACAATCCGTCCTTCCTTAGAAAGCTGAAAGCTGATAAG|GATAGTGAAGTTTTTATTACTGATAAAAAGACTGATAATTCAGAGGTTTTCTGGAATCCAAC	in-frame	EARQAKGYDNPSFLRKLKADK|DSEVFITDKKTDNSEVFWNP	.
TALL_VC081	SLC7A5P1	AC009133.22	-/-	+/+	16:29613103	16:29694664	splice-site	splice-site	inversion	upstream	upstream	0	1	0	51	144	low	.	.	.	CCGGTGCCCGAGGAGGCAGCCAAGCTCATGGCCTGCCACTGCGTGC|GCCTGGCGCTGCTGCTGCCGCCCGTCACCCTGGCAGCCCTGGTGGACAGCTGGCTCCGAGAGGACTGCCCAGGGCTCAACTACGCAGCCTTGGTCAGCGGGGCAGGCCCCTCGCAGGCGGCGC	.	.	.
TALL_VC081	SLC7A5P1	AC009133.22	-/-	+/+	16:29613103	16:29679120	splice-site	splice-site	inversion	upstream	upstream	0	1	0	51	53	low	.	.	.	GGTCTTCGCCACCTACCTGCTCAAGCCGCTCTTCCCCAGCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCATGGCCTGCCACTGCGTGC|TCCCACCCCCAGCCTGGGGCCTCTGGGAGCCTTGGTCCTGAGCAGCCAACACACCAGCCCAGACAGCTGCAAGTCACCATGGACGCTGAAG___GCCTGGCGCTGCTGCTGCCGCCCGTCA	.	.	.
TALL_VC081	FTO	RBL2	+/+	+/+	16:53704229	16:53459451	splice-site	splice-site	duplication	downstream	upstream	0	1	0	60	463	low	.	.	duplicates(1)	GGCAGCATGAAGCGCACCCCGACTGCCGAGGAACGAGAGCGCGAAGCTAAG|TCCAAAGCACTTAGAATCTCCACACCACTAACTGGTGTTAGGTACATTAAGGAGAATAGCCCTTGTGTGACTCCAGTTTCTACAGCTACGCATAGCTTGAGTCGTCTTCACACCATGCTGACAGGCCTCAGGAATGCACCAAG	in-frame	MKRTPTAEEREREAK|SKALRISTPLTGVRYIKENSPCVTPVSTATHSLSRLHTMLTGLRNAP	.
TALL_VC081	STK10	UBTD2	-/-	-/-	5:172105656	5:172234358	splice-site	splice-site	duplication	upstream	downstream	0	1	0	244	74	low	.	.	.	GAGTTCCGTGACTTCCTGAAGATAGCCCTGGATAAGAACCCAGAAACCCGACCCAGTGCCGCGCAGCTGCTGGAG|TTGCTCTAGGTCGTAACCAGCCTTTGAAAAAGGAGAAACCAAAATGGAAAAGCGATTATCCTATGACAGATGGACAACTACGCAGCAAGAGGGATGAATTTTGGGATACAGCACCAGCTTTTGAAGGCCGGAAAGAG	out-of-frame	EFRDFLKIALDKNPETRPSAAQLLE|ll*	.
TALL_VC081	STK10	UBTD2	-/-	-/-	5:172187887	5:172234358	splice-site	splice-site	duplication	upstream	downstream	0	1	0	193	74	low	.	.	duplicates(1)	AACGAGGTGTGGGAGATCGTGGGCGAGCTGGGCGACGGCGCCTTCGGCAAGGTTTACAAG|TTGCTCTAGGTCGTAACCAGCCTTTGAAAAAGGAGAAACCAAAATGGAAAAGCGATTATCCTATGACAGATGGACAACTACGCAGCAAGAGGGATGAATTTTGGGATACAGCACCAGC	out-of-frame	NEVWEIVGELGDGAFGKVYK|ll*	.
TALL_VC082	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	4	10	2	30	35	high	.	.	low_entropy(3),mismappers(1),mismatches(3)	AGGGGAGGCGCAGAGAGCGCGCCGCCACGCAGCTCCGGAAACAAAGGGCCGCCGGCGCCGAGGGCCTGGCGCGACCTCCAGGGTCAGCGCGGGGCGGAGCAGCCAGAGGTTGGCGGCGGGCGCGGG...GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGcCCTCACTGAGCAGCGAGTCGTCCCCCGT	.	.	.
TALL_VC082	RP11-143H17.1(19242),VBP1(21262)	VBP1	./+	+/+	X:155175745	X:155208874	intergenic	splice-site	deletion/read-through	downstream	upstream	2	14	0	26	50	high	.	.	duplicates(2),low_entropy(3),mismappers(1)	CTCCTTTCGCTTGGTTCACATTCTCTCTTATCTGCCTCTATGTAAGACGTGCCATTTGCCTTCCACCATGATTGTGAGGCCTCCCCAGCCACGTGGAACT|GTTCCAACTCCATTGGGAGCTCCTTCTCTAATGGCACCTCAACCCATGATTCATACCCAGCAAGGCCTAAGGACCAGTAGTCCTTCCACTCCATCCCCAGAGCATCAG___GAAGATGTAGATTCCTTCATGAAACAGCCTGGGAATGAGACTGCAGATACAGTATTAAAGAAGCTGGATGAACAGTACCAGAAGTATAAGTTTATGGAACTCAACCTTGCTCAAAAGAAAAGAAG___GCTAAAAGGTC	.	.	.
TALL_VC082	RP11-127B16.1	U3(202312),RP1-149C7.1(65896)	-/-	./-	6:92723322	6:92321945	splice-site	intergenic	deletion	upstream	downstream	2	2	0	10	12	high	.	.	.	GGGCGTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCCTGACCAGAGCGGACGCCGAGGCCGAGGAGGCGCTGAGAAGGAGCGAGGGCCGCCAGCACGTTGTCACCTCTCAAGA|ATTTATGGCTGAGGCTTCTATGACAACgGACgGATTAACTAGAGGAAAGCACACACCAAACAGGAGCCTTCAGAAATGAAGACTCAAAGACAGAGGTAAACTTGTGTATTTTTGTACTAAGTCTGATGAAGAAGTGGATAATTGTTAAGAAGTATGATTGGAG	.	.	.
TALL_VC082	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	13	29	4	89	67	medium	.	.	duplicates(5),low_entropy(3),mismatches(2)	G___GCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGG...___...TGTCTGAGTGCTATGAAGATTGC...___AaGC	.	.	.
TALL_VC082	TDG	TMEM132B	+/.	+/.	12:103965852	12:125316602	5'UTR	intron	inversion/3'-3'	upstream	upstream	3	0	1	57	4	medium	.	.	.	.	.	.	.
TALL_VC082	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	3	6	0	35	31	low	.	.	duplicates(3),low_entropy(4),mismappers(1)	GGGAAGAGTGTGGTAGCAGGGCGAGATGGGCCTCTTCTGTTTTGGCTGGCAACAGACAGTCTGCAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAATGTAAGTATTCCTGTTTCCC	.	.	.
TALL_VC082	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	5	0	43	35	low	.	.	low_entropy(3),mismatches(2)	GTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAG	.	.	.
TALL_VC082	ZBTB7C	RP11-380M21.2	-/-	-/-	18:48138865	18:47853410	intron	exon	deletion/read-through	upstream	downstream	0	0	5	0	45	low	.	.	low_entropy(1),mismatches(4)	GGATTCATACT...|...CAATCGAGTAGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGGGTATACTACGGtCAaTgcTCTG	.	.	.
TALL_VC082	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	65	110	low	.	.	duplicates(2)	CAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC082	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	21	110	low	.	.	read_through(4)	CCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAG...AGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAA	out-of-frame	QSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC082	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	1	1	87	9	low	.	.	duplicates(2),mismatches(1)	CAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTT...CAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGC	out-of-frame	NLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC082	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21904258	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	0	2	1	23	27	low	.	.	low_entropy(1)	GACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAAC...CACTGGCAGGCCACTGACCAGCAGAACGCCTTGGAGTTTGGCCAGGGCAGTCGGAGGACAGCCCAGGCCGCCCAGGCTGCCGAGTGGCCTGACCCAAGGGGAAAACCATTCTCCTTTCTGGCTCCCCCATCTGCTGAGAGCTACTTCTACTTAATAAAAC	out-of-frame	TLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg*	.
TALL_VC082	TRPM7	ATP8B4	-/-	-/-	15:50559946	15:50128320	3'UTR	intron	deletion	upstream	downstream	0	0	2	16	9	low	.	.	mismappers(2),mismatches(2)	CACAACCGC...|...GGgAATGGGTGCTTAGCCTAGATTTTCCATGTGACTCCAACTCTCTGGATGTTTCTAAAGCCAGCTCCCTCTTGAAGTTTAGCTCTGAAGCTAGGAAAACCCAGGACTCTGGTG	.	.	.
TALL_VC082	PLAGL2	C17orf53(3446),ASB16(4525)	-/-	./+	20:32195706	17:44165922	3'UTR	intergenic	translocation	upstream	upstream	0	2	0	19	17	low	.	.	.	GTGAACACTGTTTACACACCGTGAATCCATTCCCATCAGTCCATTCCAGTTGGCACCAGCCTGAACCATTTGGTACCTGGTGTTAACTGGAGTCCTGTTT|AGAGGAGGCAGGTTAAAGAGCCCGGT...TTGGGAGGCCGAGGTGGGAGGATCCCTTGGGCCCAGGAGTTCAAGCCCAGCCTGAGCAAGGTGGTGAGATGCTATCTCTTGAATAAGTAAATAAAATAATAAATAGCCCTGTTTtACAGCC	.	.	.
TALL_VC082	MYH11	NPIPA1	-/-	+/-	16:15720923	16:14937181	CDS	intron	deletion/5'-5'	upstream	downstream	0	0	2	3	11	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	GGAGGAGATGAAGACGCAGCTGGAAGAGCTGGAGGACGAGCTGCAAGCCACGGAGGACGCCAAACTGCGGCTGGAAGTCAACATG...|...TGGAAATTCAAAGTGCCCTTATAAGACATAAACATAAGAAAGAATCCAAAATGAAACAAGATTGCCTTTCAACTCAATGATGAGATCATAACATGGCAATAAAAT	.	.	.
TALL_VC082	KIAA1407	C3orf52	-/-	+/+	3:113978186	3:112116642	splice-site	splice-site	inversion	upstream	upstream	0	2	0	48	52	low	.	.	.	GGTGAAGATCGATTCTCAGGGCAAGCATGAGATTGCAGCGGAGCACAGTGACAG|AATGAAGTGATGGAGGCTGGTCTCTGTCTGAAAGCAGTGCTCTACCAAGTCCTGGAGATGAAGGGAATTCACTCTGTTTTGCAGAAAAGATTCTGTGGATTAATACAGAAGCACCAGCAACACCAGAG	out-of-frame	VKIDSQGKHEIAAEHSDr|mk*	.
TALL_VC082	SH2B1	SUGP2	+/+	-/-	16:28867432	19:19008428	splice-site	splice-site	translocation	downstream	downstream	0	1	0	170	168	low	.	.	.	GGGAGAACACGTTTGTGGTTAAG|TTGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAATTCAGCATAGAAcACAGCACCGATA...CACGTCATCTCCGCACAACCTTCACACTGGTGGTGGTGACACCACGGGTTCTCAGGAGAGCCCCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCCCTCCGCGGGAGGCTGAGC	out-of-frame	ENTFVVK|lt*	.
TALL_VC083	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	23	35	5	152	86	high	.	.	duplicates(4),low_entropy(3),mismappers(2),mismatches(4)	CACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATcCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGGTCC...___...GG...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCG	.	.	.
TALL_VC083	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	14	2	0	80	85	high	.	.	duplicates(3),low_entropy(3),mismappers(25),mismatches(2)	GTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___...GTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGG	.	.	.
TALL_VC083	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	10	1	3	227	85	high	.	.	duplicates(1),low_entropy(3),mismappers(3),mismatches(2)	TGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGtAACGCAAGGATGAGG	.	.	.
TALL_VC083	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	6	2	7	79	85	medium	.	.	duplicates(1),low_entropy(1),mismappers(7),mismatches(1)	CGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___G...CTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAA	.	.	.
TALL_VC083	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	6	119	85	low	.	.	low_entropy(2),mismappers(6),mismatches(1)	GGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG...GCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAA...ACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAAGTGAGTTCTTAGTCAAGTTGCC	.	.	.
TALL_VC083	AC013463.2	SCN2A	+/+	+/+	2:165091299	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	0	321	85	low	.	.	low_entropy(1),mismatches(3)	GCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAAC	.	.	.
TALL_VC083	PDPR	AC009120.6	+/+	-/-	16:70157953	16:74328280	3'UTR	intron	inversion	downstream	downstream	5	4	2	84	24	medium	.	.	.	CAGTGATGCTGAGTGTTCTGCTATGGAAACAATGCTGCTTTTCTCTCAGCTGTCCAAAGTTCAGCCGTTCCTCCTTCCCCTTCTCCCAGTGCGTTTGACTTTGTCAGGTCAGCCTCACTTGTCCCTTTCACAGTTGGCCCATAAAGTCATGTTTCTCTCCCTTTAGAATAGGGAGGGGAAGGGATCAGGTGTGTTGTCCTGGGCCTTTCAACCTTGCGGGCTGTGCTGAGTTCC|CAAGTGCCACTAGTGCTGACATCTTTTAACTGTGTTCATCCTCAAGGTTCATCCATGGGTCAGAATTTACTTTTTAAGGCTGAAGAATATTCTGTTGTATCTTTTTTTCTTCTCCATTCATCCCTTGGTGGACATTTGTGTTACTTCCATGTTTTAGCCATTGTGGATAGTGCTGCTGTGAACACAGATGGACAAATACCCCCGAGACCTTGCTTTCAGTTCTTTTGGGGATATACTCAGAAGTGAAATTTCTAGTCTGGGTGCATTGGC	.	.	.
TALL_VC083	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	7	2	94	302	medium	.	.	duplicates(1),low_entropy(1)	CCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC083	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	21	302	low	.	.	read_through(7)	GCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC083	C9orf9	C9orf9	+/.	+/.	9:132883707	9:132884888	intron	intron	duplication	upstream	downstream	4	0	1	21	10	medium	.	.	.	.	.	.	.
TALL_VC083	AC131213.1(55152),RP11-314D7.1(270160)	MCTP2	./.	+/.	12:72845797	15:94345315	intergenic	intron	translocation	downstream	downstream	1	0	2	5	5	medium	.	.	mismappers(2)	.	.	.	.
TALL_VC083	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	4	3	0	24	17	low	.	.	duplicates(1)	CAATACGTAACGGCGACCGTGCGCGGCTCTCTAGCACCACCCCCGCTCCCTGACTGGCGAGGTTTCTGACCAGTCAGCAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTC...CGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTC...GCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAG	.	.	.
TALL_VC083	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	24	17	low	.	.	.	CGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCG	.	.	.
TALL_VC083	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	2	2	21	14	low	.	.	.	CTGCACTGCACTGTCCCCAGAGAGCCACCCCTCCACCCACTCAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAAC	.	.	.
TALL_VC083	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	1	12	34	low	.	.	low_entropy(1),mismatches(3)	CCTCATTGTGGATCTGCCAGGGCCAAG___...TTT?TTCATTCCTGGGTTTTAATATT...___...CTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAG	.	.	.
TALL_VC083	DNAH11	EEF1A1P6	+/+	-/+	7:21839415	7:22511579	intron	exon	deletion/5'-5'	downstream	upstream	0	0	5	4	4532	low	.	.	low_entropy(1),mismatches(3)	GACCAGCCTGGACAACATGGTGAAACCCTGTCTCTACTAAAAA...|...AAGCCAGAAGGGCATGCTCTCGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCACCAACACCAGCAGCAACAATCAGGACAGCACAGTCAGCCTGAGATGTCCCTGTAATCATGTTTTTG...CTGGGGCATCAATGATAGTCACATAGTACTTGCTGGTCTCAAATTTCCACAAGGAGATATCAATGGTGATACCACGTTCACGCTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCCCTTTCCCA	.	.	.
TALL_VC083	EEF1A1P6	IGF2BP3	-/.	-/.	7:22512062	7:23324222	5'UTR	intron	deletion	downstream	upstream	0	0	5	39	5	low	.	.	mismatches(17)	.	.	.	.
TALL_VC083	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510749	7:22251572	exon	intron	deletion/read-through	upstream	downstream	0	0	5	389	12	low	.	.	duplicates(1),low_entropy(3),mismatches(8)	GGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATaCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACT...|...TAACTGATTG	.	.	.
TALL_VC083	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	4	0	22	16	low	.	.	low_entropy(4)	CGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGC	.	.	.
TALL_VC083	FP236383.8	bP-2189O9.2(105672),MIR3648-1(351)	+/+	./+	21:8391168	21:8986648	exon	intergenic	deletion	downstream	upstream	4	0	0	12	7	low	.	.	duplicates(1),mismatches(1)	GTGGCGTGTCGGGTTCGTGGCTGCGGTCGCTCCGGGGCCCCCGGTGGCGGGGCCCCGGGGCTCGCGAGGCGGTTCTCGGTGGGGGCCGAGGGCCGTCCGGCGTCCCAGGCGGGGCGCCGCGGGACCGCCCTCGTGTCTGTGGCGGTGGGATCCCGCGGCCGTGTTTTCCTGGTGGCCCGGCCGTGCCTGAG|GTTTCTCCCCGAGCCGCCGCCTCTGCGGGCTCCCGGGTGCCCTTGCCCTCACGGTCCCCGGCCCTCGCCCGTCTGTGCCCTCTTCCCCGCCCGCCGCCCGCCG...CTGTCTTTTTCGTC	.	.	.
TALL_VC083	APOD(30676),AC069213.1(66)	MUC20	./.	+/.	3:195614881	3:195720943	intergenic	5'UTR	deletion/read-through	downstream	upstream	1	2	0	4	12	low	.	.	mismappers(1)	.	.	.	.
TALL_VC083	ARHGAP29	RP4-717I23.3	-/-	-/-	1:94208260	1:93339427	intron	exon	deletion	upstream	downstream	0	3	0	15	230	low	.	.	duplicates(3),low_entropy(3),mismappers(4),mismatches(2)	ATTTGGGACCAG|TTGGCTGTCATCAGCTCTAGAAAGGGTGTGGCCGTTTTACATTGGCTGTTTTCCTCACATTCCTCAAGCAG___GTACTGTAATAAAGAACTGGAGAAATACAGTCAGATGGGAAGTAGCCCcTGCTGTCAAGGAGCTTGCCATCTAATGGGGGAGACAGGCAAGTAAACCAAAGACTACACAGTGCAGTATGGTAAGTGCCATGATTTTGATGTGACAGGGCAC	.	.	.
TALL_VC083	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	5	108	low	.	.	.	GGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCACACTGCCCTGCACAGCAG	.	.	.
TALL_VC083	ARHGEF10	MYOM2	+/+	+/+	8:1864450	8:2118769	intron	intron	deletion/read-through	downstream	upstream	0	0	3	6	1	low	.	.	.	TCTGCATCCGT...|...GCACCTGAGGGCTGTTAGTGCAGTGACACGGGCTGCTGGTTGACAAGGAAGGCTGGAGGTGGCAGGGCTGGAGGACGACGCTTCAGTAGGCTGCTGAGAGATGGTAACTCCAGCAGGGCAGTTTCA	.	.	.
TALL_VC083	PDPR	RP11-252A24.5	+/+	+/-	16:70157953	16:74428959	3'UTR	intron	inversion/3'-3'	downstream	downstream	3	0	0	84	4	low	.	.	.	AGAAAGTCCCCACCAGTGATGCTGAGTGTTCTGCTATGGAAACAATGCTGCTTTTCTCTCAGCTGTCCAAAGTTCAGCCGTTCCTCCTTCCCCTTCTCCCAGTGCGTTTGACTTTGTCAGGTCAGCCTCACTTGTCCCTTTCACAGTTGGCCCATAAAGTCATGTTTCTCTCCCTTTAGAATAGGGAGGGGAAGGGATCAGGTGTGTTGTCCTGGGCCTTTCAACCTTGCGGGCTGTGCTGAGTTCC|CAAGTGCCACTAGTGCTGACATCTTTTAACTGTG	.	.	.
TALL_VC083	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	1	2	0	30	117	low	.	.	mismatches(2)	CAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACT	.	.	.
TALL_VC083	EEF1A1P6	CDCA7L(52454),RAPGEF5(119700)	-/-	./-	7:22510742	7:21998538	exon	intergenic	deletion	upstream	downstream	0	0	3	389	1	low	.	.	low_entropy(1),mismatches(3)	GCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTtCATGC...GATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCgTTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACC...|...TTTTGTATTTTTAGTAGAAACGGG	.	.	.
TALL_VC083	EEF1A1P13	ANKH	-/-	-/-	5:14652934	5:14837671	exon	intron	deletion/read-through	downstream	upstream	0	0	3	40	12	low	.	.	mismatches(2)	...GCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTcGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCC|...TGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGACAGTGTGGCaATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAtATACCCAAAGGAaTATAA	.	.	.
TALL_VC083	TMEM182	TMEM182(15973),AC007251.2(13473)	+/+	./+	2:102798000	2:102859866	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	1	9	5	low	.	.	mismappers(1)	CCGCGGGTGCGTGGCCGGTGCTGGCTGGGAGTTCTGGTCTCAGGCAAGGTGGGGACTGGGCACATCATCAATACG___ATAGAGAACGTCACTTTTCACCATGAAGGGTTCTTCTGGAGGTGTTGGTTT...GTAGTCATCGCAAGCTTTTTGATCATCTGTGCAGCCCCCTTCGCCAGCCATTTTCTCTACAAAGCTGGGGGAGGCTCATATATTGCTGCAG|TTTCTGTGGGTCAAGAGTGTGGAAGTGGCTAAGCAGAATGAGTCCAGCTCAGAATCCCATGAGTCTGCTAATCAAGCTATTTTCTGGGGTTGCAATCATCTGAAGGCCCAGCTGGGGCTAAAGAACGC...AAAAGAAGTTGGCTAACATGAAAGCCCCACCTCCAACATTGGGAATCACATTTTAACATGAGATTTGGAGGGGACACACATCCAAACCATTTCAGACCCCAAATGTCATTGAGATTGCCTTTGGC	out-of-frame	VVIASFLIICAAPFASHFLYKAGGGSYIAA|vsvgqecgsg*	.
TALL_VC083	DCUN1D4	SPATA18(57359),RP11-588F10.1(285843)	+/+	./+	4:51914434	4:52154651	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	0	2	50	0	low	.	.	mismappers(1)	TTTAAACTCTTATAAACATTCTTTAACTTTTTTGTTTGTTTGTTCTCTTTTTTTCCTTTTGCATTCTTCTAGCCAGTGATTGATCTGCTAATGCTTTCTTTGCCACTCTAAGTAAA...|...CCCCTCAAAAAAA	.	.	.
TALL_VC083	PITPNM2	CDK2AP1	-/-	-/-	12:123075574	12:123267282	splice-site	splice-site	duplication	upstream	downstream	1	1	0	173	92	low	.	.	.	CTCTCCGCCCTCCTGTGTCCTTTCTCAGCGGCTGCTCTAAAGTATAACTTCACGTAGTGGTGACTTAACTTGAAAGGAGCCGCAGGGGGCGTGAGAGCAGCTTGGAGAGGTGGGAGCCTGGGCCGC...TGGAAAGCTCGTTCCAGGAAAATTGGAATAATCACCTCATTGGCTGGCTTTCAGGCG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGACTACG...ACAGCCAGGTGCCCCAAAGCAAATACGCGGAGCTGCTGGCCATCATTGAAGAGCTGGGGAAGGAGATCAGACCCACGTACGCAGGGAGCAAGAGTGCCATGGAGAGGCTGAAGCGCG___GCATCATTC	.	.	.
TALL_VC083	NUP214	RIMKLB	+/+	+/+	9:131135004	12:8782912	splice-site	splice-site	translocation	downstream	upstream	1	0	0	64	211	low	.	.	.	CTGGAgACGTtTCCAGATGTGGTGATGGCTCTACTACCG___AAAAAAGAAGAAAAGCACCCAGAGATATTTGTGAACTTTATGGAGCCCTGTTATGGCAGCTGCACGGAGAGACAGCATCATTACTACCTCAGTTACATTGAGGAATG|GTTCTTTTGAAGTAACCAGTGATCTTTTTT	out-of-frame	LETfPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEw|ff*	.
TALL_VC083	SYNJ2	GNAS	+/+	+/+	6:157982087	20:58903527	splice-site	splice-site	translocation	downstream	upstream	1	0	0	83	2502	low	.	.	.	GGCAGCGCGCCCTCGGGAGGACGTGGCCCCGGCCCCCGCCCGCAGTGGGCCCGACCCTCATGGCCCTGAGCAAAGGGCTGCGGCTGCTGGGGCGCCTGGGGGCCGAGGGGGACTGTAGCGTGCTGCTGGAGGCGCGCGGCCGCGACGACTGCCTGCTGTTCGAGGCCGGCACGGTGGCCACGCTG|GCAGTGAGAAGGCAACCAAAGTGCAGGACATCAAAAACAACCTGAAAGAGG	out-of-frame	MALSKGLRLLGRLGAEGDCSVLLEARGRDDCLLFEAGTVATL|avrrqpkcrtsktt*	.
TALL_VC083	NAA25	HECTD4	-/-	-/-	12:112090726	12:112204623	splice-site	splice-site	duplication	upstream	downstream	1	0	0	78	53	low	.	.	.	GGTAATAATAAAATGGCAATTCAGCAAGCAGATAAACTGTTGAAGAAACATAAGGATCTTCATTGTGCTAAG___GTTTTAAAGGCAATTGGTTTACAGAGAACTGGAAAGCAAGAGGAAGCCTTTACT...GAGGTGGCAGCCCTTGAACCCACAGATGACAACTCACTGCAGGCACTGACTATCCTTTACCGGGAGATGCACCGAC|GTATGGTGGATATTGCCCGACAGACGGTTGAATTTCTCTACGAAGAGAAT	in-frame	EVAALEPTDDNSLQALTILYREMHR|rMVDIARQTVEFLYEE	.
TALL_VC083	UBE2I	UNKL	+/+	-/-	16:1320517	16:1403344	splice-site	splice-site	inversion	downstream	downstream	0	1	0	516	51	low	.	.	.	GGAATACAGGAACTTCTAAATGAACCAAATATCCAAGACCCAGCTCAAGCAGAGGCCTACACGATTTACTG|GTGTCCCTACCTGCACCGGACGACGGGGGACACAGAACGCAAGTACCACCTGCGT...G___GGAGCTGCAGGCCCAGGAAGCCTTGCAGAACGGCCAGCTGGGCGGCGGGGAAGGGGTCCCGGATCTGCAGCCTGGGGTCTTGGCCAGCCAGGCCATGATTGAGAAGATCCTGAGCGAGGACCCCC	in-frame	GIQELLNEPNIQDPAQAEAYTIYw|CPYLHRTTGDTERKYHL	.
TALL_VC084	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	10	11	1	60	59	high	.	.	duplicates(1),low_entropy(4),mismappers(1),mismatches(1)	CTCCTGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCC...CATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGACGGTGGGACAGACaGG	out-of-frame	SWKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL_VC084	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	5	3	24	39	high	.	.	.	G___...TTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGG	.	.	.
TALL_VC084	KMT2A	MLLT1	+/+	-/-	11:118484314	19:6270759	splice-site	splice-site	translocation	downstream	downstream	2	1	3	211	47	high	.	.	duplicates(1)	GTAAAACAAAAACCAAAAGAAAAG___GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG|TGCACCGTCCAGGTGAGGTTAGAGCTGGGGCATCGCGCCCAACTGCGCAAGAAGCCCACCACGGAGGGGTTCACTCACGACTGGATGGTGTTTGTCCGCGGCCCCGAGCAATGTGACATCCAGCACTTCGTGGAGAAGGTGGTCTTCTGGCTGCACGACAGCTTCCCCAAGCCCAGACGCG___TGTGCAAGGAGCCCCCCTACAAAGTAGAGGAGTCGGG	in-frame	VKQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFK|CTVQVRLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFWLHDSFPKPRRVCKEPPYKVEES	.
TALL_VC084	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	13	39	3	103	80	medium	.	.	duplicates(3),low_entropy(2),mismappers(5),mismatches(3)	GCGGGAGGTGGacagCttgac___...GCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACC	.	.	.
TALL_VC084	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	11	9	1	206	441	medium	.	.	duplicates(1),low_entropy(2),mismatches(1)	CCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATT...AGGGTCCTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC084	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	25	441	low	.	.	read_through(10)	TTTAAATAAGGCCTGTTTATTGGAATTATTAATAATTTTGGAGATGGGAAAAGAGCATGACTGTTTGACTTTGTAGGTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGC	out-of-frame	fk*glfigiinnfgdgkra*lfdfvGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC084	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	6	0	20	39	medium	.	.	duplicates(1),inconsistently_clipped(1),low_entropy(1),mismappers(1)	CTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCG	.	.	.
TALL_VC084	FUBP1	GIPC2	-/.	+/.	1:77950262	1:78042050	intron	intron	deletion/read-through/3'-3'	downstream	upstream	10	0	0	317	1	low	.	.	duplicates(2),low_entropy(22),mismappers(9),mismatches(5)	.	.	.	.
TALL_VC084	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	5	1	23	15	low	.	.	duplicates(2)	CATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAgTCCCAGCACTTTGGGAGGCCGAG...ACCACTGAAACATGACATCCTTAGATCATgCCCTGGGCCAAAAATAAAAATAAAAATAAAAATATAAATGAGGTTGCTCATACCAAGGTGATGGTATTAAAAGGTGGAGGTTTTCAATTATGA	.	.	.
TALL_VC084	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	7	1	35	17	low	.	.	duplicates(1),low_entropy(1)	TGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACAC...GCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAG	.	.	.
TALL_VC084	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	2	120	27	low	.	.	duplicates(2),mismappers(2)	CATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAG	.	.	.
TALL_VC084	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	2	33	27	low	.	.	duplicates(1),low_entropy(1),mismappers(2)	CATCATccaCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGA...CGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCCTGCCCTTTACATTTTAACTCCCTTCAACCCTATTAGAAAATTAGCTATTAAGATTTTGGTACATTCATATCCTT	.	.	.
TALL_VC084	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	3	0	0	11	27	low	.	.	duplicates(1),mismappers(4)	CTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCC	.	.	.
TALL_VC084	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	148	27	low	.	.	.	AACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTT?CCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGC	.	.	.
TALL_VC084	CD34(42695),PLXNA2(68145)	CD34	./-	-/-	1:207954097	1:207900003	intergenic	splice-site	deletion/read-through	upstream	downstream	4	2	0	32	1238	low	.	.	low_entropy(2),mismatches(1)	GCAGAAGAGGAAGTGGAGATTTGAAGCATGAGAGGGATTTCAGGCTCCACTGCTGGCTTGAAGATGGAGGGGACCACCTGTTAAGAAATTTATGTGGCTCTAGGAGTTGAAAGCAGCCTCTAGCTGACAGCCAGCAAGAAAACAGGAATATCAGTCCTACAACCACAAGGAACTGAGTTTTGCCAAGAATAAGAATGGGCTTGAAGTAGAGTCTTCCTCAGAGCTTCCAG|CTTCTGGGTTCATGAGTCTTGACAACAACGGTACTGCTACCCCAGAGTTACCTACCCAGGGAACATTTTCAAATGTTTCTACAAATGTATCCTACCAAGAAACTACAACACCTAGTACCCTTGGAAGTACCAGCCTGCACCCTGTGTCTCAACATGGCAATGAGGCCACAACAAACATCACAG___AAACGACAGTCAAATTCAC	.	.	.
TALL_VC084	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	4	1	0	67	26	low	.	.	duplicates(1),low_entropy(1),mismappers(6),mismatches(2)	GTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGcGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCC	out-of-frame	FLDQSQKVLYKEVMLaNYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC084	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	2	3	0	42	8	low	.	.	duplicates(2),low_entropy(1)	GGAGAATGGCTTCAAGGCCCTGAGAAGCACCATTGATGCCGTGAGTGGGTGGAGATGAGGGGCTGGGGGCCTGGCTCACTCTCCCTGCCCCGCCCCACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAACTGTGAGACATGCACTTGCTACGAAACAGAAATTTCATGTTGCACCCT___TGTTTCTACACCTGTGGGTTATGACAAAGACAA	.	.	.
TALL_VC084	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	1	82	240	low	.	.	.	GTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATcGACATCCTGtCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGC	.	.	.
TALL_VC084	EEF1A1P6	DNAH11	-/-	+/-	7:22510682	7:21832438	exon	intron	deletion/5'-5'	upstream	downstream	0	0	5	851	1	low	.	.	duplicates(1),mismatches(22)	TGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGC...|...AGCCAAACTAAGCTTCgTAAGtGAAGGAGAAATAAAATCCTTTACAGACAAGCAAATGCTGAGAGATTTTGTC	.	.	.
TALL_VC084	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511942	7:23363436	exon	intron	deletion	downstream	upstream	0	0	5	59	0	low	.	.	mismatches(10)	.	.	.	.
TALL_VC084	CD226(20087),RTTN(21903)	CD226	./-	-/-	18:69981890	18:69947433	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	1	10	17	low	.	.	.	GTCAATGCAAGTATTCAATTAAAAAGAAAATGACTGCAGATCTGTTTCTATTTAATACTTAGAGAATTGTAGGTTCTAGGTACTCTGAAACAGCCACTAATTTCATTCCCTTGGCTTACCTATTCCCTTGGATATAG|AACCAGCCTTTCAAACAGTTTCCAGAGATGGATTATCCTACTTTACTTTTGGCTCTTCTTCATGTATACAGAG___CTCTATGTGAAGAGGTGCTTTGGCATACATCAGTTCCCTTTGCCGAGAACATGTCTCTAGAATGTGTGTATCCATCAATGGGCATCTTAACACAGGTGGAGTGGTTCAAGATCGGGACCCAGCAGGATTCCATAGCCATTTTCAGCCCTACTCATGGCATGGTCATAAGGAAGCC	.	.	.
TALL_VC084	EEF1A1P13	TRIO	-/-	+/-	5:14652227	5:14444522	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	51	1	low	.	.	low_entropy(1),mismatches(7)	GTAAAATCTGTCGAAATGCACCATGAAGCTTTGaGTGAAGCTCTTCCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCCACACGGCTCA...|...GGGGTGAGCAG	.	.	.
TALL_VC084	CPA4	CPA5	+/+	+/+	7:130312122	7:130346393	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	36	9	low	.	.	.	TTTCTCTTGAGCATATTTGGCCCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GCTGGGCTTTCCAGCCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTG	out-of-frame	fs*aylalphvcmtspfsg*DKVARLAAKALASVSGTEYQVGPTCTTV|cwafqplgavls*	.
TALL_VC084	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	36	10	low	.	.	.	TTTCTCTTGAGCATATTTGGCCCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTG	out-of-frame	fs*aylalphvcmtspfsg*DKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacrapleagralghppwtgghswssalswqql	.
TALL_VC084	C21orf33	AP001056.1(6534),AP001057.1(18303)	+/+	./+	21:44140342	21:44182987	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	1	407	8	low	.	.	duplicates(1)	CACAGACCTGGCCAACCTCAGTGCAGCCAACCATGATGCTGCCATCTTTCCAGGAGGCTTTGGAGCGGCTAAAAACCT___GAGCACGTTTGCCGTGGACGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG|CTCCTGTTCCATCCGCATCTATTTCATCTATTTCATCTGACTCCTCACCACCTCCTGTTCCATTCCTGTCTATTTCATCTGACGTCTCACCAGCTCCTGTTCCATTCCCGTCTATTTCATCTGATGTCTCACCAGCTCCTGTTCCATCCTTGTCTATTTCATCTGATTTCTCACCAGCTC	out-of-frame	TDLANLSAANHDAAIFPGGFGAAKNLSTFAVDGKDCKVNKEVERVLKEFHQAGKPIg|scsiriyfiyfi*	.
TALL_VC084	C6orf183	CCDC162P	+/+	+/+	6:109270176	6:109285976	exon	splice-site	deletion/read-through	downstream	upstream	1	1	1	7	5	low	.	.	.	CCAGCTCATTTGGGAGTTTGATTCATATATTTACATGTTGAATAAGTGGTGATTTCAACCCTCAACTCACTTCTTTATGCAAGACATTCCTAATATTTTTCATATTTTCTTCCTTTAGCTTTTGCTGCATTCAGGAGTGGAAAATATGCAGGTGACTCTTGCATGCCAAGCTGCTCAGAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGCACCCCTCAAGGGAGCTGTCCTGCTAATGTCAAG|GATGAAATTGGAAAAGTCAAGAGAGATGTTATGGTTGAATATTGTCAGAA___GTTTAACCACCGCATGTCTCACTATGCTCTTCGGGGTCAGATCATGGCATACTGCAATAGCCTGAGAGATCTT	.	.	.
TALL_VC084	SPSB4	SPSB4(56296),PXYLP1(23819)	+/+	./+	3:141066798	3:141204907	splice-site	intergenic	deletion/read-through	downstream	upstream	0	3	0	35	6	low	.	.	duplicates(1)	CAAGAAGCTGTACCCGGTGGTGAGTGCCGTGTGGGGCCACTGTGAAGTCACCATGCGCTACATCAACGGCCTTGACC|GCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGACCTGCACGTACACATCCAGATGGCCAGTTCCTGCCTTAACTGATGACATTCCACCACAAAAGAAGTGGAAATGGCCTGTTCCTGCCTTAACTGATGACATTATC...GTTCCTTCTGGCTCATCCTGGCTCAAAAGCTCCCCTACTGAGCACCTTGTGACCCCCACTCCTGCCCACCAGAGAACAACCCCCTTTGACTGTAATTTTCCTTTACCTACCCAAATCTTATAAAAC	out-of-frame	KKLYPVVSAVWGHCEVTMRYINGLD|rl*	.
TALL_VC084	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	3	0	40	7	low	.	.	mismatches(1)	TTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAG	.	.	.
TALL_VC084	ANKS1A	ZNF76	+/+	+/+	6:35068550	6:35267527	intron	intron	deletion/read-through	downstream	upstream	0	0	3	9	1	low	.	.	mismappers(1),mismatches(3)	GTTACTAAGCTTTGGCAGCTCCTCTCCCAGAATAGGCAGGCCCCAAAACTCAATCCAGCAAGGGTGTGGCTTTGTCCCCGCACTCAGCTCTTCCTACCCTCCCTACTCTTGGTTAGCGGAAcCTGC...|...TCTACACCAGG	.	.	.
TALL_VC084	GOLGA8N	FMN1	+/+	-/+	15:32604821	15:32962621	3'UTR	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	724	1	low	.	.	mismappers(1),mismatches(4)	ATTATGGTGGTGCCCTTAGGATTTGTATGTGCTCTGGGCTCATGAAGATATTGCATCATGAGCTGCAGCAGTTGCACTCTTTTTCGATGACCTAAAAAGGGCTTATTTCTGAGGAATGAAAGGTTC...|...ACAATgAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACgCTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAAT	.	.	.
TALL_VC084	EEF1A1P9	NPNT	+/+	+/+	4:105486025	4:105980077	exon	intron	deletion	downstream	upstream	0	0	3	71	1	low	.	.	.	TATGGTTCCTGGCAAGCCCaTGTgTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCgTGATATgAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGC...|...CCTTCCTAATCAGTTGGAGCTGGCATTAAACACTGAGACCCATTAGCCtTTCTAGAGCTgAAGCTGGTACTTTGATATACAAAACAACACTCTACGTAGTTATATGGCTCTTTCAAAGGATCCCAA	.	.	.
TALL_VC084	FRDAP(110396),RNA5SP388(7129)	NRXN3	./.	+/.	14:78170674	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	2	1	0	3	5	low	.	.	.	.	.	.	.
TALL_VC084	XPR1	CACNA1E	+/+	+/+	1:180885677	1:181507548	3'UTR	intron	deletion	downstream	upstream	0	0	2	67	0	low	.	.	mismappers(2)	ATTAAATTTAGCATTTCATTATCTAACAAAATTAATATAAATTCCAGGACATGGTAAAATGTGTTTTAATAACCCCCAGACCCAAATGAAAATTTCAAAGTCAATACCAGCAGATTCATGAAAGT...|...TCAGGGGCAG	.	.	.
TALL_VC084	TUBA1C	SPATS2	+/+	+/+	12:49272676	12:49402558	CDS	intron	deletion/read-through	downstream	upstream	0	0	2	2988	3	low	.	.	mismappers(1),mismatches(7)	CTAACCTTAACCGCCTTATTAGCCAGATTGTGTCCTCCATCACTGCTTCCCTGAGATTTGATGGAGCCCTGAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCCCGCATCCACT...|...GAGATTGTCG	.	.	.
TALL_VC084	SF3B1	RUFY3	-/-	+/+	2:197405076	4:70762519	splice-site	splice-site	translocation	upstream	upstream	1	0	1	1674	350	low	.	.	.	GCCATCTGGAAATCTTCCATTTTTAAAACCTGATGATATTCAATACTTTGATAAACTATTG___GTTGATGTTGATGAATCAACACTTAGTCCAGAAGAGCAAAAAGAGAGAAAAATAATGAAGTTGCTTTTAAAAATTAAGAATGGAACACCACCAATGAGAAAG|ATCCTAATTATCTCATGGCTAATGAAC	out-of-frame	PSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRK|iliiswlm	.
TALL_VC084	RP11-394B2.1	MYO6	+/+	+/+	16:70665835	6:75890208	splice-site	splice-site	translocation	downstream	upstream	0	1	1	32	1173	low	.	.	duplicates(1)	CCTGGATATGGCCACCGAGGG|GAAAAAGACGTGAAGAAGACGAAAAACGTCGAAGAAAGGAAGAGGAGGAAAGGCGGAT___GAAACTTGAGATGGAAGCAAAGAGAAAACAAGAAGAAGAAGAGAGAAAGAAAAGGGAAGATGATGAAAAACGC	.	.	.
TALL_VC084	AHR	GUCY1A3	+/+	+/+	7:17322607	4:155696756	splice-site	splice-site	translocation	downstream	upstream	0	1	1	90	747	low	.	.	.	GTAGAGCAGCAAATTTCAGAGAAGGCCTGAACTTACAAGAAGGAGAATTCTTATTACAG|ACATCCCAGTTACCAGTGTCCTTGAATTGATAGTGGCTTCTGTTTGTCAGTCTCATATAAGAACTACAGCTCATCAGGAGGAGATCGCAGCAGGGTAAGAGACACCAACACCATGTTCTGCACGAAGCTCAAGGATCTCAAGATCAC	out-of-frame	RAANFREGLNLQEGEFLLQ|tsqlpvsln*	.
TALL_VC084	HPS4	WDR59	-/-	-/-	22:26476993	16:74909657	splice-site	splice-site	translocation	upstream	downstream	1	0	0	149	163	low	.	.	.	GCACAGTAGATGGCCACCTCTACCTCCACAGAGGCAAAGTCAGCCTCGTG___ACCCTGCTAGACCAACAGGAGTTGCTTTGTGGACAGATTGCTGGAGTTGTCCGCTGTGTTTCTGACATTTCTGACTCTCCTCCTACTCTTGTTCGTCTGAGAAAACTGAAGTTTGCCATAAAAGTTGATGGAGATTACCTTTGG|AACCAGGAAGACAGCGCTTCCAGCAACCCGTTTGCACTCCCCAACTCTGTC	out-of-frame	MATSTSTEAKSAS*PC*TNRSCFVDRLLELSAVFLTFLTLLLLLFV*EN*SLP*KLMEITFg|trktalpatrlhsptl	.
TALL_VC084	ATP11B	XRN1	+/+	-/-	3:182820376	3:142312758	splice-site	splice-site	inversion	downstream	downstream	0	1	0	43	137	low	.	.	.	CACCTCAGAAATTTATAGATAACAGGATCATTTCATCTAAG|CTAATATAATGCCTTCGTCGTCTCATCTCTTTGGCTCAATGCCATGGGGACCATCGGTGCCAGTTCCTGGG...GGACCATGCCCATGGCTGGGGGAATACCAGGGGGTGTGCACAATCAGTTTATACCTCTGCAG___GTTACTAAAAAAAGGGTTGCAAACAAAAAGAACTTTGAGAATAAGGAAGCCCAGAGTTCTCAAG	out-of-frame	PQKFIDNRIISSK|li*	.
TALL_VC084	NOTCH1	CSNK1G2	-/-	+/+	9:136544024	19:1969508	splice-site	splice-site	translocation	upstream	upstream	1	0	0	79	236	low	.	.	.	CGCCGCTCCTGGCGCCCCTGCTCTGCCTGGCGCTGCTGCCCGCGCTCGCCGCACGAG___GCCCGCGATGCTCCCAGCCCGGTGAGACCTGCCTGAATGGCGGGAAGTGTGAAGCGGCCAATGGCACGGAGGCCTGCGT|CTGTGAGCCGTGAGCTTTGAGGCGGTGGGATGTGTCAGCAGAATGTCTCCTGCC	out-of-frame	PLLAPLLCLALLPALAARGPRCSQPGETCLNGGKCEAANGTEACv|cep*	.
TALL_VC084	ATL3	WHSC1	-/-	+/+	11:63658761	4:1904216	splice-site	splice-site	translocation	upstream	upstream	0	1	0	26	302	low	.	.	.	CTGATCCAGAAACCACTGGGATTCAAATCTGGAGTGAAGTTTTCACTGTGGAGAAGCCAGGTGGGAAGAAG|ATTCCAGCTAAGAAAGAGTCTTGTCCAAACACTGGAAGAGACAAAGACCACCTGTTGAAATACAACGTTGGTGATTTGGTGTGGTCCAAAGTGTCGGGTTACCCTTGGTGGCCTTGCATGGTTTCTGCAGATCCACTCCTTCACAGCTATACCAAACTTAAAG___GTCAGAAAAA	in-frame	DPETTGIQIWSEVFTVEKPGGKK|IPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQK	.
TALL_VC084	VAV3	CEP44	-/-	+/+	1:107874901	4:174308689	splice-site	splice-site	translocation	upstream	upstream	1	0	0	62	87	low	.	.	.	CCGGCGGCTGTTGGCGTCGGCGGGGCGCGGAGGAACCGCGGCGGCGGCGGCGGC---CGCATCCTTGCCGCCCGCCCCGGCCCAGCCGCGTCCCGGAGCCGTaGGGCATGGAGCCGTGGAAGC...TCTCACGGCCTGTTGTGAGACGTTTGGAATGAGGAAAAGTGAACTTTTCGAGGCATTTGACTTGTTTGATGTTCGTGACTTTGGAAAG|AAGAAAGCTGTGGTGATTCGTCACTTGTATAATGAAG	in-frame	LTACCETFGMRKSELFEAFDLFDVRDFGK|KKAVVIRHLYNE	.
TALL_VC084	SNURF	TXNL1	+/+	-/-	15:24962209	18:56611097	splice-site	splice-site	translocation	downstream	downstream	0	1	0	652	412	low	.	.	.	CAGAACAGCACGTACCAGAGGTGGAAGTCCAAGTCAAACGCAGAAGGACTGCCTCACTGAGCAACCAAGA|ATATTTGTTCAGTCGAATCAAGGTGAAGAGGAAACAACAAGAATTTCATATTTTACTTTTATTGGTACTCCAGTCCAGGCAACAAATATGAATGACTTCAAACGA___GTAGTTGGCAAAAAAGGAGAA	out-of-frame	EQHVPEVEVQVKRRRTASLSNQe|ylfsrikvkrkqqefhillllvlqsrqqi*	.
TALL_VC084	CDKAL1	CASC15	+/+	+/+	6:20781265	6:22191567	splice-site	splice-site	deletion	downstream	upstream	1	0	0	152	464	low	.	.	.	GTGTGGTAGAAGTTGTGGAGGAGACAATTAAAG___GTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGCTTGGGGGAGCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGG|TTCTGGAGACCAGAAGGCCAAAATCAAAAGTATGGGCAGGCTTGATTTCTTTAGAAGACTCCAGC	out-of-frame	VVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTg|sgdqkakiksmgrldffrrlq	.
TALL_VC084	CDKAL1	CASC15	+/+	+/+	6:20548705	6:21978945	splice-site	splice-site	deletion	downstream	upstream	0	1	0	157	363	low	.	.	.	ATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAG|GTAAAATCTACTGGTGGAGTCACTCCATTATTCTTATCTGTGGAGATCTAGATCTTGATTTGAAAGTTTCTGAGAAAATCTTCAGCTCAGACTTGAGGGTCAACTTTACCAGCTGAAG___GATCTGCATTTAC	out-of-frame	NSDGEYMAGQLAAYGYKIT|gkiywwshsiilicgdldldlkvsekifssdlrvnfts*	.
TALL_VC084	MALAT1	CPNE1	+/+	-/-	11:65497863	20:35632925	splice-site	splice-site	translocation	downstream	downstream	1	0	0	18	478	low	.	.	.	CTCCGCAGCCTGCAGCCCGAGACTTCTGTAAAGGACTGGGGCCCCGCAACTGGCCTCTCCTGCCCTCTTAAGCGCAGCGCCATTTTAGCAACGCAGAAGCCCGGCGCCGGGAAGCCTCAGCTCGCCTGA|AGATGGCCCACTGCGTGACCTTGGTTCAGCTGTCCATTTCCTGTGACCATCTCATTGACAAGGAC	.	.	.
TALL_VC084	MALAT1	RP1-309K20.6	+/+	-/-	11:65497863	20:35632925	splice-site	splice-site	translocation	downstream	downstream	1	0	0	18	478	low	.	.	.	CTCCGCAGCCTGCAGCCCGAGACTTCTGTAAAGGACTGGGGCCCCGCAACTGGCCTCTCCTGCCCTCTTAAGCGCAGCGCCATTTTAGCAACGCAGAAGCCCGGCGCCGGGAAGCCTCAGCTCGCCTGA|AGATGGCCCACTGCGTGACCTTGGTTCAGCTGTCCATTTCCTGTGACCATCTCATTGACAAGGAC	.	.	.
TALL_VC086	MTAP	RP11-408N14.1	+/+	-/+	9:21838010	9:22210664	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	124	91	15	441	345	high	.	.	duplicates(36),low_entropy(56),mismappers(3),mismatches(5)	CTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|GAAAAGAAAAATACGACACATAGCCATGATTGAAGACGTGTACCTTCATCTGAGAAGACATCTGCAAATATTCTGGTCACTATTAAACTATATCCAATTTTTAAGTTGTTTATTT...___GAAAAGGAGCTGATTGTTAATGGAAGAAGGAAGAAATACAAGTTTGTTGGGTATTTAGTATATGCCAG...___AGGCTGAAAACTTAAAAAATTGGATGAAAATTATGAAGATAGTCTGACATGATATATTAAGAGCTCTGAATGATGCCTAGGGATGTAGAAGAGGAGAAAAACACTTGA___ATTGTGTGCGCCTGTAATCCCAGGACTTTGGGAGACCAAGATCAGCAGATCACTTAAGGCCAGGAATTTGAGTCCAGCCTGGGCAACAAG___GTCAACCTTCTGGGATACAG	out-of-frame	MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|ekkntthshd*	.
TALL_VC086	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	31	55	0	205	123	high	.	.	duplicates(4),low_entropy(1),mismappers(2),mismatches(2)	GCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGG...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTA	.	.	.
TALL_VC086	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	4	22	0	87	40	high	.	.	duplicates(1),low_entropy(1)	ACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCG	.	.	.
TALL_VC086	ZNF445	LINC00694	-/-	-/-	3:44455121	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	65	40	low	.	.	.	TTCCTGAGCATCCTGCCTGGGGAGCTCCGGGTTTGGGTGCAGCTTCATAACCCTGAGAGTGGCGAGGAGGCTGTGGCCTTGCTGGAGGAGCTGCAGAGGGACCTTGATGGGACATCCTGGAGG|GTATGTCTAGAGGTCAGTTTGGACAGGG	out-of-frame	FLSILPGELRVWVQLHNPESGEEAVALLEELQRDLDGTSWR|vclevsldr	.
TALL_VC086	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	6	7	1	44	60	high	.	.	duplicates(2),mismatches(4)	CGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GCCGA?ATTGCCTGGGCGCTG...___...TCGCTCTCGGG...___...TCGC...___...CTTCTGCCTTTATTTT...___...TTGT...___...G...___...GCGC...___...GTGG...___...TTG...___...GCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCC	.	.	.
TALL_VC086	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	6	6	1	96	46	high	.	.	low_entropy(1),mismappers(1),mismatches(2)	GTGTCAGGGTCACAGTCGGGTGGTGCACTATTAAGAATAGGTGCTAGCAATCCATCCCAGCCAGCAGAGGTTGTAATTTGGAACAAGCAGATCATGCTGTTGCCAAAGGTCTCAAAGTTcAACATG...AAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCT	.	.	.
TALL_VC086	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	5	2	0	34	46	low	.	.	duplicates(2),low_entropy(3),mismappers(9),mismatches(3)	TTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTT	.	.	.
TALL_VC086	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	2	40	46	low	.	.	mismappers(2),mismatches(3)	GATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACT...CCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCT	.	.	.
TALL_VC086	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	165	46	low	.	.	duplicates(3),low_entropy(1),mismatches(4)	GGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAAC	.	.	.
TALL_VC086	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482896	17:4483875	intron	intron	duplication	upstream	downstream	1	2	0	32	13	high	.	.	.	.	.	.	.
TALL_VC086	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	10	9	1	180	497	medium	.	.	duplicates(4),mismatches(1)	CGGGCGGGGCCGTTGGCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC086	MTAP	CDKN2B-AS1(45078),RP11-408N14.1(37815)	+/+	./+	9:21838010	9:22166175	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	1	441	17	medium	.	.	mismappers(1)	GAACATCTGGGCTTTGAAGGAAGAGaGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|TTCATTTAACAAGTCTATTCACCAGTTACAAAATCATAGTAATGTGGTACAGGCACAACATTCAACAGTAAGAGGAAGTCAT	out-of-frame	NIWALKEEsCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|fi*	.
TALL_VC086	SPNS3	RP13-580F15.2	+/.	-/.	17:4482896	17:4483875	intron	intron	duplication/3'-3'	upstream	downstream	1	2	0	32	13	medium	.	.	.	.	.	.	.
TALL_VC086	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	4	3	2	206	57	low	.	.	duplicates(2)	AAACAGCAGAAAAAGCATTACATAAAAG___TGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTT...AAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTG	out-of-frame	KQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|maiciqfilm*	.
TALL_VC086	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	3	120	243	low	.	.	duplicates(2),low_entropy(3)	TGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG	out-of-frame	GELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC086	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	2	206	243	low	.	.	duplicates(2)	CTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTG	in-frame	FEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFL	.
TALL_VC086	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	173	243	low	.	.	mismatches(1)	GAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCAC	out-of-frame	NIQL|asrnrfs*	.
TALL_VC086	EEF1A1P13	TRIO	-/-	+/-	5:14652244	5:14501173	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	6	62	0	low	.	.	duplicates(1),mismatches(14)	GCACCATGAAGCTTTGaGTGAAGCTCTTCCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTG...|...TCTACCAACT	.	.	.
TALL_VC086	EEF1A1P6	DNAH11	-/-	+/-	7:22510811	7:21757415	exon	intron	deletion/5'-5'	upstream	downstream	0	0	5	4079	0	low	.	.	low_entropy(3),mismatches(22)	GC___CGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGG...|...GTTTAAATAAAAA	.	.	.
TALL_VC086	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	4	0	0	11	9	low	.	.	duplicates(1),mismappers(1)	GCTGAAAGCTCCCAAGAGTACGTTACTCTTCAAGG___TATAAGCCATGTAGAACTGAATGTTATGATGCATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACTAATGTTGG___CCTGTTCCC...GGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGT	out-of-frame	ESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvk	.
TALL_VC086	PRRC2C	DNM3	+/+	+/+	1:171591455	1:172053126	intron	intron	deletion	downstream	upstream	0	0	4	106	0	low	.	.	low_entropy(1),mismappers(1),mismatches(4)	CTTGAAAAGGTGGTGGGAGGTGGTCCTGTGGTTTTTTTTTTTTTTTTAAATCACATGAAATATTTCAAAAATAGGAAGAAATCTATTCATTAAAAGCTCAAAGATCAATGAGG...|...AGATCATTTAGG	.	.	.
TALL_VC086	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	1	1	6	6	low	.	.	.	AGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTG...CGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAA	.	.	.
TALL_VC086	RPL6P27	L3MBTL4	-/-	-/-	18:6462475	18:6293229	exon	intron	deletion/read-through	upstream	downstream	0	0	4	214	1	low	.	.	low_entropy(2),mismatches(4)	GAGAAAACTGCGAGCCAGCATTACCCCCGGGACCATTCTGATCATCCTCACTGGACGCCACAGGGGCAAGAGGGTGGTTTTCCTGAAGCAGCTGGCTAGTGGCTTATTACTTGTGACTGGACCTCT...|...ATTGCTCCCAGG	.	.	.
TALL_VC086	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	3	0	41	13	low	.	.	low_entropy(3),mismatches(1)	CTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGG...GGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGT	.	.	.
TALL_VC086	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	0	3	0	23	6	low	.	.	duplicates(1)	ATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGAC	out-of-frame	INSFEEHVASTSAALPSCLPPEVPTQLPGQ|elksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
TALL_VC086	EEF1A1P13	DNAH5	-/-	-/-	5:14652727	5:13908834	exon	intron	deletion	upstream	downstream	0	0	3	1666	1	low	.	.	low_entropy(1),mismappers(1),mismatches(3)	AAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTcGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAAC...|...AGTGAAAGTCTTCATG	.	.	.
TALL_VC086	RP11-592N21.1	LRRC49	-/-	+/-	15:71341214	15:70988701	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	646	1	low	.	.	low_entropy(1),mismatches(1)	GTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCAGAAGAGGAGGTTGCCCAGA...|...GCAAAATAACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATGTAAATGGcCTAAATGCTCCAATTAAAAGACACAGACTGGCAAAtTGGATAAAGAGTCAA	.	.	.
TALL_VC086	MED20	USP49	-/-	-/-	6:41906978	6:41891875	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	0	1	57	66	low	.	.	.	AGTGATGAGCAGCTGCCAGCTGAGCTCTGTCACCAGGGGTACTCCACAGGAGGAGCAGGTGCTGACTTTCAGGTCCCTGGACCCCAGAAACCCAGG|ATTCTTTGGATGGGAAGAGACCTTGAAAGGACCTCTAGTTTATCCTGCAACTCCAGTCAATATCCCACTTAAATCATTCCAG___G	.	.	.
TALL_VC086	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	11	62	low	.	.	low_entropy(1)	GTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG	.	.	.
TALL_VC086	TUBA1C	LIMA1	+/+	-/+	12:49272463	12:50223627	CDS	intron	deletion/5'-5'	downstream	upstream	0	0	3	4197	0	low	.	.	.	CCGGTCTTCAGGGCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCcCTGCTCATGGAACGTCTCTCAGTTGATTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCGGCGCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAACTCCATCCTCACCACCCACACCACCCTGG...|...GAGAGTTCAC	.	.	.
TALL_VC086	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	583	32	low	.	.	.	GATTGGCTCATGGGGGCCGACTTCCCCCTTGCTGTTCTCGTGATATTGAGTGAGCGCTTGTGGGATCTGGTTGTTTAAAAGCGTGCAGCCCTCCCACTTCACTCTCTCTGTCTCTCCTGCTCCAAC...GCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGAC	out-of-frame	LPLRLLP*lsvs*glpshasctacrt|hwqqrpllhreggq*	.
TALL_VC086	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	583	32	low	.	.	.	GATTGGCTCATGGGGGCCGACTTCCCCCTTGCTGTTCTCGTGATATTGAGTGAGCGCTTGTGGGATCTGGTTGTTTAAAAGCGTGCAGCCCTCCCACTTCACTCTCTCTGTCTCTCCTGCTCCAAC...GCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGAC	out-of-frame	LPLRLLP*lsvs*glpshasctacrt|HWQQRPLLHREGGQ*	.
TALL_VC086	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	2	1	0	11	9	low	.	.	.	ATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTC...ATATCACCACTGAAAATAGCTGCTCgCTTCTTATGGCTCTGGACACACTGCTGAACTCTGACAGTACAAAGGAAATG___GGTTTTACGTGCAAGATCCAGGCTCTGCGTGATAAGCTGTGGATCTTCC	out-of-frame	IIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmas	.
TALL_VC086	RPL6P27	LAMA1	-/.	-/.	18:6462436	18:7004146	exon	intron	deletion	downstream	upstream	0	0	3	159	1	low	.	.	.	.	.	.	.
TALL_VC086	MOB1B	GRSF1	+/+	-/-	4:70902550	4:70836314	splice-site	splice-site	inversion	downstream	downstream	1	1	1	115	410	low	.	.	.	CCTCCTCCTCCGCCTCCCTGTCTCCTGTTCCATTCGCCTTTCCTCTTCTTTCCTGGCCCACGCCGCTCCGAGGCCTCGCGACCGCCGAGCCTGCAGCCTGCCCCGCGGCCAACATGAGCTTCTTGTT|GAGTCCAAAACTACTTACCTGGAAGACCTTCCACCACCCCCTGAGTATGAATTGGCCCCGTCCAAGTTAGAAGAGGAAGTGGATGATGTCTTTCTCATTCGAGCTCAAGGACTGCCCTGGTCATGCACTATGGAAGATGTGCTTAACTTTTTTTCAG___ACTGCAGAATCCGCAACGGTGAGAATGGAATACATTTTCTCCTAAACAGAGATGGGAAACGAA	out-of-frame	MSFLl|spklltwktfhhplsmnwprps*	.
TALL_VC086	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	1	0	28	8	low	.	.	mismappers(2)	AAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGG	out-of-frame	GEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC086	MYEF2	FBN1	-/.	-/.	15:48162583	15:48492350	intron	intron	deletion/read-through	downstream	upstream	0	0	2	145	0	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL_VC086	DNAH14	H3F3A	+/+	+/+	1:225259398	1:226063283	intron	intron	deletion	downstream	upstream	0	0	2	1	191	low	.	.	mismappers(2),mismatches(4)	AGAAAATCCTTT...|...GTCTCTCTTCTCTGGTCACCGACCATATTTTTTCCCCCGTTTCTCTCTTCCCCATTTCAAAAAAGCAAGAATTTTTAAAAGAGGGACGTTTTTTTCCCTTTTTTGGAGAGGCGGAAACTTGATG	.	.	.
TALL_VC086	LOXHD1	ATP5A1	-/-	-/-	18:46510611	18:46097393	intron	intron	deletion	upstream	downstream	0	0	2	0	55	low	.	.	mismappers(1),mismatches(1)	TGCAGAGCCAC...|...ATTAATACCCTTCGTTATTTGTTTCCCTTGAAATTAACATGATTTCAGTGTAAACGCATTGACACTGACAC[t]TTTTTTTTTGTTCTAAAAGTAATCTCAATTTGAAAGGTGAAATAAACATGTTGG	.	.	.
TALL_VC086	RP11-613M10.8	PAX5	-/-	-/-	9:37554129	9:37017565	intron	intron	deletion	upstream	downstream	0	0	2	1	1	low	.	.	low_entropy(1)	GCCAGTGGTTAGGGACAGGAGAGAGGAGGGAGAATTGAGACGTGTATAGTTACAAAAGGGCAACACAAGGGATCCATATGGTGTTGGAACTGTTCACCGTCTTTACTGGTCATAGATACACAAAGT...|...GAGATTCTGCCT	.	.	.
TALL_VC086	TRIM16	CDRT1	-/-	-/-	17:15677176	17:15615809	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	18	5	low	.	.	.	CTTGCTCAGAGAGTCTTGTACAGGGATGTAATGCTGGAGAACTATAGGAACCTGGTCTCCTTGG___TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC|GGCTCAATCAAGACATCACAGATGTGTGTTTTTCCCCTGAGAAAGACCACAGCTCCAAGTCTGCGACCTCACAAGTCTATTGGACAGCCAAAACTCAGCACACATCCCTTCCTTTGTCCAAAGCCCCAGAAAATGAACACTTCCTTGGGGCAGCATCTAACCCTG___AGGAACCATGGAGGAA	.	.	.
TALL_VC086	TRIM16	RP11-385D13.1	-/-	-/-	17:15677176	17:15615809	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	18	5	low	.	.	.	CTTGCTCAGAGAGTCTTGTACAGGGATGTAATGCTGGAGAACTATAGGAACCTGGTCTCCTTGG___TAGGATTTCCATTTTCCAAACCTGGTATCATCTCCTAGTTGGAAGAAGTGGTAAGCCCACGAACACAAATGCAGGAGGGAGAGGTGCCAAGAAGCAGCGGTACAC|GGCTCAATCAAGACATCACAGATGTGTGTTTTTCCCCTGAGAAAGACCACAGCTCCAAGTCTGCGACCTCACAAGTCTATTGGACAGCCAAAACTCAGCACACATCCCTTCCTTTGTCCAAAGCCCCAGAAAATGAACACTTCCTTGGGGCAGCATCTAACCCTG___AGGAACCATGGAGGAA	.	.	.
TALL_VC086	EIF3D	RBFOX2	-/-	-/-	22:36513870	22:35885717	intron	intron	deletion	upstream	downstream	0	0	2	55	1	low	.	.	mismappers(1),mismatches(1)	GCCTGTTTGACATTTGTCTCCTAACTGATTTCTCTACCTCCACCCAACTTCTATATTTGATTTATCTCCGCCAGTCAATTGTCCAATACACGCTTCATCAGCAGTGCAGATTGGGAGAAGAATTCT...|...GAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGGGAAACGcCaTA	.	.	.
TALL_VC086	ATP5A1	PSMA1	-/-	-/-	18:46087008	11:14513699	splice-site	splice-site	translocation	upstream	downstream	1	0	1	2249	1062	low	.	.	.	CCTGGTGATGTGTTCTACCTACACTCCCGGTTGCTGGAGAGAGCAGCCAAAATGAACGATGCTTTTGGTGGTGGCTCCTTGACTGCTTTGCCAGTCATAGAAACACAGGCTGGTGATGTGTCTGCTTACATTCCAACAAATGTCATTTCCATCACTGACGGACAG|GATATGGGCCCTCACATTTTCCAAACCTGTCCATCTGCTAACTATTTTGACTGCAGAGCCATGTCCATTGGAGCCCGTTCCCA	in-frame	PGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ|DMGPHIFQTCPSANYFDCRAMSIGARS	.
TALL_VC086	ATP5A1	PSMA1	-/-	-/-	18:46087008	11:14513699	splice-site	splice-site	translocation	upstream	downstream	1	0	1	2249	1062	low	.	.	.	CCTGGTGATGTGTTCTACCTACACTCCCGGTTGCTGGAGAGAGCAGCCAAAATGAACGATGCTTTTGGTGGTGGCTCCTTGACTGCTTTGCCAGTCATAGAAACACAGGCTGGTGATGTGTCTGCTTACATTCCAACAAATGTCATTTCCATCACTGACGGACAG|GATATGGGCCCTCACATTTTCCAAACCTGTCCATCTGCTAACTATTTTGACTGCAGAGCCATGTCCATTGGAGCCCGTTCCCA	in-frame	PGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ|DMGPHIFQTCPSANYFDCRAMSIGARS	.
TALL_VC086	MLLT1	RABL6	-/-	+/+	19:6217954	9:136825779	splice-site	splice-site	translocation	upstream	upstream	0	1	0	49	174	low	.	.	.	GAGCCATCCCAGAACCACAGCCAAG|CCACGGATGACATCGTGAAGGTTGAAGTCTGGGATGTAGTAGACAAAGGTGAGGCGTCTCTGTTCTGTGTCTGCTTCTCTCTGGGACTGTGTGCTCTGCGCAGAGAGGCTTCCTTTCTTT	in-frame	EPSQNHSQ|aTDDIVKVEVWDVVDKgeaslfcvcfslglcalrreasfl	.
TALL_VC086	BRWD1	EXOC2	-/-	-/-	21:39298432	6:532610	splice-site	splice-site	translocation	upstream	downstream	1	0	0	175	76	low	.	.	.	GCAGTACCAG___TTGTTGCCGAAGAGATTGGACTGGGAGGGCAACGAGCACAACAGGAGCTACGAGGAGTTG___GTCTTGTCCAATAAGCATGTGGCTCCTGATCATCTTTTGCAAATCTGCgAGCGCAT...GAAGGCAGTCTTTGCTACGTACAGCAAAAG|GTTAGCATGGCCTCATTGAAAGAACTAGATCAAAGACTCTTTGAAAATTACATCGAGTTGAAAGCAGATCCCATCGTTGGCTCCTTAGAACCTGGA	out-of-frame	RQSLLRTAK|g*	.
TALL_VC086	RBM34	KAT6A	-/-	-/-	1:235160893	8:41949363	splice-site	splice-site	translocation	upstream	downstream	0	1	0	269	79	low	.	.	.	GTACGTGCCTGTGCCTAAA|GCTGCCCAAATTGTATCTTTGTGAATTTTGTCTAAAATATATGAAAAGTAGAACTATTCTGCAGCAGCACATGAAGAAATGTGGTTGGTTCCATCCTCCTGCCAATG...AGAATAATATTTCTGTCTTTGAG___GTTGATGGGAATGTGAGTACCATTTATTGTCAAAACCTGTGTCTTTTGGCAAAGTTGTTTCTTGACCACAAAACCCTCTATTACGATGTGGAGCCATTTCTTT	out-of-frame	YVPVPK|aaqivsl*	.
TALL_VC086	ARID2	ANO6	+/+	+/+	12:45731314	12:45331295	splice-site	splice-site	duplication	downstream	upstream	1	0	0	114	104	low	.	.	.	GGGCTTTTTCTCTCCCGCAGGTCGCCTTTTAAAAAAATCCCTGCGGTGGGTGGGAAGGAGCTGGATCTTCACGGTCTCTACACCAGAGTCACTACTTTAGGCGGATTCGCGAAG___GTTTCTGAGA...CAGAAGTTGTTCTAACGCTGCCTTTGCTTTAAAACAGTATTACTTGCG|GAAGAATTTAATGGAAAACCTGACTCCCTCTTTTTTAATGATGGCCAGCGAAGAATTGACTTTGTTCTAGTATATGAG	out-of-frame	RSCSNAAFALKQYYLr|knlmenltpsflmmaseeltlf*	.
TALL_VC086	NSD1	UIMC1	+/+	-/-	5:177136030	5:176943488	splice-site	splice-site	inversion	downstream	downstream	1	0	0	88	278	low	.	.	.	GCGCGGGGCACG___GTTGATGCCGGCCCAGGATGGATCAGACCTGTGAACTACCCAGAAGAAATTGTCTGCTGCCCTTTTCCAATCCAGTGAATTTAGATGCCCCTGAAGACAAGGACAGCCCTTTCG...GCTAGAATTACCTGGAACTTCATCATCATCTACTTCACAGGAATTGCCATTT|GTTGGTAACAAGGAAGATGCTGAGAAGGAAGTAGCTATTTCTACCTTCTCATCCAGTAACCAGGTATCCTGCCC	in-frame	LELPGTSSSSTSQELPF|VGNKEDAEKEVAISTFSSSNQVSC	.
TALL_VC086	FBXO31	SLC7A5	-/-	-/-	16:87360295	16:87840473	splice-site	splice-site	duplication	upstream	downstream	0	1	0	40	482	low	.	.	.	GGGACGTCTATGCGAAGC|GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTGGCCATCATCATCTCCCTGCCCATCGTGACGCTGGTGTACGTGCTGACCAACCTGGCCTACTTCACCACCCTGTCCACCG	out-of-frame	DVYAK|rit*	.
TALL_VC086	ARID4B	KAT6A	-/-	-/-	1:235160893	8:41949363	splice-site	splice-site	translocation	upstream	downstream	0	1	0	269	79	low	.	.	.	GTACGTGCCTGTGCCTAAA|GCTGCCCAAATTGTATCTTTGTGAATTTTGTCTAAAATATATGAAAAGTAGAACTATTCTGCAGCAGCACATGAAGAAATGTGGTTGGTTCCATCCTCCTGCCAATG...AGAATAATATTTCTGTCTTTGAG___GTTGATGGGAATGTGAGTACCATTTATTGTCAAAACCTGTGTCTTTTGGCAAAGTTGTTTCTTGACCACAAAACCCTCTATTACGATGTGGAGCCATTTCTTT	out-of-frame	YVPVPK|aaqivsl*	.
TALL_VC086	RABEP1	NUP88	+/+	-/-	17:5282520	17:5399650	splice-site	splice-site	inversion	downstream	downstream	0	1	0	69	172	low	.	.	.	CGCCCATCCCCGCTCCCCGAGGCCGGCCGCCTGGTCATGGCGCAGCCGGGCCCGGCTTCCCAGCCTGACG|ATCCCAAGTGTCCTTCAAGATATCACTGTACTCATGAAGCTGGTGTACATAGTGTTGGGCTAACTTGGATTCATAAACTTCACAAATTTCTTGGATCAG___ATGAAGAAGATAAGGA	in-frame	MAQPGPASQPD|dPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDK	.
TALL_VC086	PDS5A	H2AFZ	-/-	-/-	4:39862869	4:99948523	splice-site	splice-site	duplication	upstream	downstream	0	1	0	218	3642	low	.	.	.	CACGACAATGTTTACTGAAAAATATCAGTATACGCAGGGAATACATTAAGCAGAATCCTATGGCTACTG|GTGTCATTCCACACATCCACAAATCTCTGATTGGGAAGAAAGGACAACAGAAGACTGTCTAAAGGATGCCTGGATTCCTTGTTATCTCAGGACTCTAAATACTCTAACAGCTGTCCA	in-frame	RQCLLKNISIRREYIKQNPMAT|gVIPHIHKSLIGKKGQQKTV*	.
TALL_VC086	ANP32B	DAPK1	+/+	+/+	9:97983609	9:87498970	splice-site	splice-site	duplication	downstream	upstream	0	1	0	1665	49	low	.	.	.	GCTGAGGAACCGGACCCCGGCAGCT|GACTGGAGACTGATGCATGAGGGGGCTACGGAGGCGCAGGAGCGGTGGTGATGGTCTGGGAAGCGGAGCTGAAGTGCCCTGGGCTTTGGTGAGGCGTGACAGTTTATCATGACCGTGTTCAGGCAGGAAAACGTGGATGATTACTACGACACCGGCGAGGAACTTGGCAG___GTGCAGTTAGAAGAAGGTGGAAGAAAAAAGAAGTTGACACTCC	out-of-frame	LRNRTPAA|dwrlmhegateaqerw*	.
TALL_VC086	ACSF3	CBFA2T3	+/+	-/-	16:89102759	16:88901656	splice-site	splice-site	inversion	downstream	downstream	1	0	0	1064	139	low	.	.	.	CAGATCTGCTGTGGTTTTGTCGTCATCTTGAGAGGCTGCTAAAGGGGAGCAACAAAGAGCCAGCCTTCTCCTTCCCCTTCCTCAGTGGGGAGGCCCAGAGCTCCTTTCCGTGAGCCCGAGGTCTGT...CCACGTGCTCCCGCTGCACCACGTCCATGGTGTGGTCAACGCGCTGCTCTGTCCTCTCTGGGTGGGAGCCACCTGTGTGATGATGCCTGAGTTCAGCCCTCAGCAG|CCCCAGTGGACAGGAAAG	out-of-frame	HVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQQ|pqwtg	.
TALL_VC086	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89098591	splice-site	splice-site	inversion	upstream	upstream	0	1	0	121	241	low	.	.	.	GCCGGATCCCCCGGACCCCCCGAC|t|GTGTCCCAaCGGCCTTCCGGGTTCCAGCGCCAGGCCTGGTGCCTGCCCCAGGAGGATGAGCATTTGCATTGCCTGCACCTTATCGTGCCCTTCCACCTGCTGAAGCAGCTGTGCCTGCCGCTCTTGTGAACTGCGAAC	.	.	.
TALL_VC087	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	8	9	2	47	71	high	.	.	duplicates(2),low_entropy(3),mismatches(1)	TCCTTTTCTTTTTT...CACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGAT[t]TTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTG...TTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCC	.	.	.
TALL_VC087	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	21	23	1	125	61	medium	.	.	duplicates(1),low_entropy(2)	G___GCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGAC?ACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___A	.	.	.
TALL_VC087	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	7	7	0	83	289	medium	.	.	duplicates(4),mismatches(1)	GCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC087	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	0	2	1	37	28	medium	.	.	.	.	.	.	.
TALL_VC087	RNASEH2B-AS1	RNASEH2B	-/+	+/+	13:50866386	13:50927407	intron	splice-site	deletion/read-through/3'-3'	downstream	upstream	5	4	0	36	837	low	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(1)	CCGGTCTGGGTGAGTATGGGTGTATGACAGTGCATCCTGCAATGGGATGGTGTCCTGTCCAGGGCTGGTTCCTGCCTTGACTCTGCGCTGCCTGGAGAGGCTCCAGCCAGTCTGGACCGTAAAATGGAATAAGCAG|AATATTTAAAAGATGCTTCAAAGAAGATGAAAAATGGGCTAATGTTTGTAAAACTGGTTAACCCCTGTTCAG___GAGAAGGAGCCATTTACTTGTTCAATATGTGTCTACAGCAGCTGTTTGAAGTAAAAGTTTTCAAGGAAAAAC...GCATCTTGTTGCTGAAACTTCCTGGACTTGAGAAGTTACTTCATCATGTGACAGAGGAAAAAG___TGACATGTCCTGAGAAGATGGCTGCAGATGTCCAGCCCCCAATCCATCCTGCCTCATCTTGCCTGCAG	.	.	.
TALL_VC087	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	5	0	1	58	8	low	.	.	low_entropy(1)	ACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGACATGACCCGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAAT	out-of-frame	CVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLLEAGDGGPAVAVGHDPHAEHAHRVPLPAYHPQHE|vtqealtwspqnsinssrcs*	.
TALL_VC087	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	5	0	1	312	140	low	.	.	mismatches(1)	GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAAC	out-of-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC087	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	459	140	low	.	.	mismatches(1)	GTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCC	in-frame	VYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLS	.
TALL_VC087	C5orf56	RAD50	+/+	+/+	5:132449689	5:132556332	splice-site	5'UTR	deletion/read-through	downstream	upstream	4	1	0	63	6	low	.	.	.	CGCAGCTGCCGTTTCAGGCGAGGGGCGCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGC...GAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ATATCTATTGCTGGGAGCACTGATCGGAATGGATTACCTCTACATTCTTCATATTTGCAGACTGCTTTTAGTTTTAGTTCCCAGACTTTTGGTCTTAAAGACGCCTTTACACTAAAAAATTACGGGGGACCTCAAAGAGCGT___ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|diycweh*	.
TALL_VC087	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	3	1	16	7	low	.	.	.	AGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAAC...GGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGG	.	.	.
TALL_VC087	GYPE	RP13-578N3.3	-/-	+/-	4:143880411	4:143841053	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	2	2	0	174	8	low	.	.	.	AAATAATCTTTGTATTACTATTGTCAG___aAATTGTGAGCATATCAGCATCAAGTACCACTGGTGTGGCAATGCACACTTCAACCTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATG|AAAGAGCATGCTCCCTGTGTTGATGCAGTCGCCCCCCTCCCGGGCTTTGTTCTACACATGGATGTAACCTGCCACACACTGGAAGACACTAAGTTTGGAACCCATGTAATGTTCAACTAGTCAAACAAGGGAAAATAGCATCAACCTTACCATTAATTTAAGTCACCTTTTGCAAAAGCTCCTCTACCCCATATGTTTTTTAACCGAC	out-of-frame	IIFVLLLSeIVSISASSTTGVAMHTSTSSSVTKSYISSQTN|eracslc*	.
TALL_VC087	DNAH11	EEF1A1P6	+/+	-/+	7:21901814	7:22510745	3'UTR	exon	deletion/5'-5'	downstream	upstream	0	0	4	137	130	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(11)	CTTAAACTCTTTCAAAATATAAAAGCAGCAGGCCCCAGGTGAGTCCTGAAGGAAGAGGCTAGCACTCTGTAAGGCC-------TCCAGTGTCTACAATGTTGATGGTCCCCTTTTGTTCAGTCAAGTTTTAAT...|...GGATAGTCTGAGAAGCTCTCAACACACATGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAACGGCGATCAATCTTTTCCTTCAGCTCAGCAAACTTGCATGCAATGTGAGCCGTGTGGCAATCCAAT	.	.	.
TALL_VC087	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853398	18:48099720	exon	intron	deletion/read-through	downstream	upstream	0	0	4	76	0	low	.	.	low_entropy(1),mismatches(8)	...ACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGGGTATACTAC|...TCAATTGGCC	.	.	.
TALL_VC087	CHFR	ANKLE2	-/-	-/-	12:132836707	12:132755133	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	2	1	32	308	low	.	.	duplicates(1),mismatches(5)	TGATCACTGACCAGTTGGCTACTGAACGGTGAAGGTCTGATGAGCTGATGAGCCGTCCCCTGGGCTTGAAATCTTTCCCGCGGCACAAACAGGCGCCCCTTCCTCTGTCGCTCACTTTTCACGGTTGTCTCCTTCTGAGGCG|GTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGGATTGAAATGTGGACCCATTACATCAACTACAAGGTTCATTTTTGAGAAAAAATTGGCTCAG...ACTGGAGCAAGGAGGAAGGCTGTCTTCTTTCTACtACCATGAGGCAGGTGTCACAGCTCTCAGCCAGGACCCACAAAGGATTTTGAAGCCAGCTGAAGGGAACCCAACTGATCAGGCTGGTTTTTC...AGTGTATGAGGACGTCCCAGCGAGAAATG___AAAGGATCTATGTTTATGAAAATAAAAAGGAAGCATTGCAAGCTGTtAAGATGATCAAAGGGTCCCGATTTAAAGCTTTTTCTACCAGAGAAGACGC	.	.	.
TALL_VC087	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	14	160	low	.	.	.	GGCTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGCAAGAGAGAAAGTGAATACGCTGATATAAGAAGCAAG___AAACCTTCCTTCCTTCCAGATGTGTGTCAGTAGAATT...CCTTTCTAGAGACAGAGCTGTATACCTGTTCCAAAACACCACATCTCACTCAGTGACTTATTTCTCATTATGCTAATTGTTTTGCTGTAAAGTGCCAATGTTTCTGTGAATTAAGACATACG	.	.	.
TALL_VC087	EEF1A1P13	TRIO	-/-	+/-	5:14652621	5:14516456	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	27	0	low	.	.	mismatches(3)	GGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTcGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGG...GCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGaATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCC...|...CACCTGGGCTCAAG	.	.	.
TALL_VC087	MGMT	RP11-109A6.3(44288),EBF3(21560)	+/+	./+	10:129759341	10:129813723	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	87	6	low	.	.	.	CTTACCAGCAATTAGCAGCCCTGGCAGGCAACCCCAAAGCCGCGCGAGCAGTGGGAGGAGCAATGAGAGGCAATCCT|GTCTTGGAAGAAACCATCACACCGAGGTCATTTCTGAGCACAGCGTGGAAGCTCCTATGTTTGCAG___ATTGATTCCTTGGAGTGGAATTAGTAAAAAGGATATGAATATTTTTAGTCTCTTGATATGTcAGACTGATTTCCAGAAGGCTTGTACCAATTTACTCTTCTACCGACAACTGTAAGAATA	out-of-frame	YQQLAALAGNPKAARAVGGAMRGNP|vleetitprsflstawkllclqidslewn*	.
TALL_VC087	MTND4P12	CTD-2410N18.4	-/-	-/-	5:134927027	5:134353784	exon	intron	deletion	upstream	downstream	0	0	3	341	6	low	.	.	low_entropy(1),mismappers(1),mismatches(13)	CCaCTGtCAAAACAcATAGCCTACCCCTTCCTTGTACTATCCCTaTGAGGCATAATTATAACAAGCTCCATCTGCCTaCGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATtCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAaTCGCCCACGGACTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGcAC...|...AGATgGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACA	.	.	.
TALL_VC087	WDR66	CLIP1	+/+	-/+	12:121999629	12:122274108	exon	CDS	deletion/read-through/5'-5'	downstream	upstream	0	0	2	7	86	low	.	.	mismappers(1)	AGCCGCTGCAC...|...TGAGGTCTTGATTCTTCCTTTGAAGGTCCACTATTACTGAATTTAGGAAATCAATCTGATTTGTTAAAAAAAAAATGTGTAAAATGTCAAGAATATATATAAGCTGGAGCATCAAGA	.	.	.
TALL_VC087	ANLN	ELMO1	+/+	-/+	7:36453491	7:37292917	3'UTR	intron	deletion/5'-5'	downstream	upstream	0	0	2	173	0	low	.	.	mismappers(1)	GTAAATTGAAAAATCTTTATATTAAAAAAGTAAACTGTTATGAAGCTGCTATGTACTAATAATACTTTGCTTGCCAAAGTGTTTGGGTTTTGTTGTTGTTTGTTTGTTTGTTTGTTTTTGGTTCAT...|...GGCGGGGTCA	.	.	.
TALL_VC087	PTPRN2	NCAPG2	-/.	-/.	7:158505059	7:158632049	intron	intron	deletion/read-through	downstream	upstream	0	0	2	0	382	low	.	.	low_entropy(3),mismappers(2),mismatches(6)	.	.	.	.
TALL_VC087	AC108004.3	RPH3AL	-/-	-/-	17:413129	17:327579	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	14	6	low	.	.	.	GGGGAGGCTGACGGTGGAGGAGTCAGAAGGGAGGTGCTTCTTTTCCACTTTGCTCTGTCTGTGCTCTGGTTTCGGGCCACGCTCTTTGCAAGGACTTAAGATGTCATGAAAGGAGGAAGAAAGCGGCTGGCTCTTCAGGCTCTGACTCTGATGTTTATCTGCTGAGTAGATGAGCAG|ATGTGACTCCCCACCCCCAGCCGGGTGCTCCGAGCCATGGCCGACACCATCTTCGGC	.	.	.
TALL_VC087	UVSSA	CTBP1	+/+	-/-	4:1355245	4:1238337	splice-site	splice-site	inversion	downstream	downstream	0	2	0	64	189	low	.	.	duplicates(1)	GTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCATTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCCATCCTGAAGGACGTGGCCACTGTGGCCTTCTGCGACGCGCAGTCCACGCAGGAGATCCATGAGAAG___GAGAAGGGTTTTCAGCCCAGCACTGCAC	out-of-frame	AIDLKAELELVLRKYKELDIEPEGGERhR|asdlrs*	.
TALL_VC087	UVSSA	CTBP1	+/+	-/-	4:1366431	4:1228343	splice-site	splice-site	inversion	downstream	downstream	1	0	0	55	208	low	.	.	duplicates(1)	GGGAGGGGAAAGGCaCAGG___ACAGAAGCCCTGGGGGATGCGGAGGAAGATGAGGACGATGAGGACTTTGTGGAGGTCCCTGAGAAGGAGGGGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTATG|GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTCAC	out-of-frame	GGERhRTEALGDAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEY|gpergcggpdvphhhs	.
TALL_VC087	UVSSA	CTBP1	+/+	-/-	4:1355245	4:1228343	splice-site	splice-site	inversion	downstream	downstream	0	1	0	64	208	low	.	.	.	GGgGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACC...GGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG___GTCGCGTGGGGCAGGCAGTGGCGCTGCGGGCCAAGGCCTTCG	in-frame	gLVLRKYKELDIEPEGGERhR|VLNEAVGALMYHTITLTRED	.
TALL_VC087	NKD2	LPCAT1	+/+	-/-	5:1009560	5:1501603	splice-site	splice-site	inversion	downstream	downstream	2	0	0	539	25	low	.	.	.	GGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GTGGCCCTCATGACACTGACGCTCTT	in-frame	GKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|VALMTLTL	.
TALL_VC087	SUN1	DNAAF5	+/+	+/+	7:866067	7:754589	splice-site	splice-site	duplication	downstream	upstream	0	2	0	366	25	low	.	.	.	TGAGTACTCGCTGTTCTGAAACTTACGAAACCAAAACGGCGCTGATGAGTCTGTTTGGGATCCCGCTGTGGTACTTCTCGCAGTCCCCGCGCGTGGTCATCCAG|AGCGCCGCCCTGTGCTGGGCTGCCGGGAGCTCGTCTTCAGGAACCTCTCCAAGATCCTCCCTGCCCTGTGCCACGACATCACCGACTGGGTGGTGGGGACCCGAGTGAAGTCGGCACAGCTGCTCCCAGTGCTGCTGCTGCATGCCGAG...GGGCCTGTCTGCAGCCCTCCCAAGACCCGCAGATGCGCCTGAAGCTGTTCTCCATCCTGTCCACCGTGCTGCTCAGAGCCACGGACACCATCAACTCCCAGGG___GCAGTTTCCCAGCTACCTCGAG	out-of-frame	STRCSETYETKTALMSLFGIPLWYFSQSPRVVIQ|saalcwaagssssgtsprsslpcattsptgwwgpe*	.
TALL_VC087	RP11-307E17.8	ZNF782	+/+	-/-	9:94339020	9:96852005	splice-site	splice-site	inversion	downstream	downstream	0	1	0	36	13	low	.	.	.	GGGAACAAAGCCCACAAGCACC|a|CTGAGGCTTTACAGTTCTCTATACTCTCCCAAGAGCCACAGAAAATGAACACATTTCAG___GCATCAGTGTCATTCCAGGACGTGACTGTGGAATTCAGCCAGGAGGAGTGGCAGCACATGGGCCCTGTTGAGAGGACCCTGTACAGAGATGTGATGCTGGAGAACTACAGCCACCTCGTCTCAGTGG___GCTACTGCTTTACAAAACCAG	.	.	.
TALL_VC087	FOCAD	LRRC19	+/+	-/-	9:20823115	9:26996499	splice-site	splice-site	inversion	downstream	downstream	1	0	0	33	3	low	.	.	.	ATGATTCCTGTTTCAA___GCCATATCAACATGGTGCAGATATGTTGGCAGCTATTTCTCAAGTGTTGAATGAATGCACCAAGCCTGATCAAGCTACTCCAGCAGCCTTGGTATTACAGGGTCTTCATGCACTCTGTCAAGCTGAG|AAAATGAGAACATCACCATGTGTAGC	out-of-frame	dscfKPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAE|kmrtspcv	.
TALL_VC087	FOCAD	LRRC19	+/+	-/-	9:20823115	9:26999703	splice-site	splice-site	inversion	downstream	downstream	1	0	0	33	3	low	.	.	.	CAAG___GTGTGTATAGGACAAATTCTACGAATAATACAACTACTTGGAACCACACCACGACTAAGAGCTGTCACTTTGCGCTTGCTGACATCTTTGTGGGAAAAGCAG___GACCGAGTCTATCCTGAACT...CCAGCAGCCTTGGTATTACAGGGTCTTCATGCACTCTGTCAAGCTGAG|GTCTGCAACATGAAAGTCACAGGCATCACAATCCTCTTTTGGCCCCTCTCCATGATATTATTATCAGACAAAAcCCAG	in-frame	PAALVLQGLHALCQAE|vcnMKVTGITILFWPLSMILLSDKt	.
TALL_VC087	RUFY2	AZIN1	-/-	-/-	10:68394328	8:102828678	splice-site	splice-site	translocation	upstream	downstream	0	1	0	70	331	low	.	.	.	GTAATTGTTGGGCTGCTGGTTGGCCTGAATGTGATCGATGCTAATCTGTGTGTGAAGGGAGAGGATTTAGACTCACAA|GTATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAACTTCTTCTTTGTGCCTTCTTGCATTCAGCTGAGCCAAGAAGACAGCTTTTCCGCTGAAGCTTAAACAGGC	out-of-frame	VIVGLLVGLNVIDANLCVKGEDLDSQ|v*	.
TALL_VC087	EXD3	EHMT1	-/-	+/+	9:137323725	9:137716626	splice-site	splice-site	inversion	upstream	upstream	1	0	0	26	124	low	.	.	.	AAG___CTCCGGGCCCAGGTCGGGGCTGGcCGCTGCCTCTCGGTCGACTGCTCCCTGAAGGCCCAGCAGCAGGCCAAGGCTGTGCTCAAGCATTTCAACGTGCGTGTCACCCACGCAGACATCTTCAGCCGCTGCCAG|AGACACCTAgGGCTGCCGATGAAGGCTCAGCAGAGAAACAGGCAGGAGAGGCCCACATGGCTG	out-of-frame	KLRAQVGAGRCLSVDCSLKAQQQAKAVLKHFNVRVTHADIFSRCQ|rhlglpmkaqqrnrqerptw	.
TALL_VC087	EXD3	EHMT1	-/-	+/+	9:137372905	9:137754171	splice-site	splice-site	inversion	upstream	upstream	1	0	0	59	234	low	.	.	.	GCTGCCTTGGACGACCCCCTGGCCGGGCTTCTGGACATGCTGGAGAGCTGCCGGGGCCAGCGGGGAGAGGGCCCCTCCCTGGCGGCCTGGATCTCCCACCAGCTGCAGTGCTGGCTACAGGCAC...GCAGACAGGAGCTGCCTGCTGGCACAaGTCCgCCGCCTCCACCACGAGGGCAGGTTCAGAGAA|AGTTCGGAATCCAGCATTAAGAAGAAATTTCTCAAGAGGAAAGGAAAGACCGACAG	in-frame	ADRSCLLAqVrRLHHEGRFRE|SSESSIKKKFLKRKGKTD	.
TALL_VC087	CBFA2T3	ACSF3	-/-	+/+	16:88976657	16:89102604	splice-site	splice-site	inversion	upstream	upstream	1	0	0	6	64	low	.	.	.	TGGCCCCTGAGGGTGGCCCTCCTCATGCCGGCTTCAAGACTGAaGGACAGGGCAGCCAGTTCAGCCTCGGGATCCACCcGTGGCcCCATGTCCCAGACGCACCCTGTGCTGGAGAGCGGCCTCCT...GCTCCGCACCCCGGGGTCCCAGGAAGGGCGGCCCAG|GTGACCGGGCTGGTCCACAAGTGGGCATGGACCAAAGACGACGTGATCCTCCACGTGCTCCCGCTGCACCACGTCCATGGTGTGGTCAAC	out-of-frame	SAPRGPRKGGP|gdragpqvgmdqrrrdpprapaaprpwcgq	.
TALL_VC087	TIMM13	CSNK1G2	-/-	+/+	19:2427256	19:1969508	splice-site	splice-site	inversion	upstream	upstream	0	1	0	351	521	low	.	.	.	GTGGCCAACGCGCAGGAGCTGCTGCAG___AGGATGACGGACAAGTGTTTCCGGAAGTGTATAGGGAAACCTGGGGGCTCCCTGGACAACTCCGAGCAG|CTGTGAGCCGTGAGCTTTGAGGCGGTGGGATGTGTCAGCAGAATGTCTCCTGCCCCCGAGAGCGACCCCGAGGCCACTGAGAAGAGCAGCGCGGCCTGGCCGGCCCGAACGCCTGCGTCTCAGTAGCTGGGAGCCACGGGCC	out-of-frame	VANAQELLQRMTDKCFRKCIGKPGGSLDNSEQ|l*	.
TALL_VC087	GAS6-AS1	TFDP1	+/+	+/+	13:113815691	13:113610996	splice-site	splice-site	duplication	downstream	upstream	0	1	0	11	158	low	.	.	.	CTTTTGCCTCCCACCGTGATTCTGAGGCCTCCCCAACCATGTGCAATT|GCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTTAGTCCCGGGAAAGGTAA...GCGTCAAACACCCTGGTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGG___GAAGCGCAACAGGAAAGGAGAGAAGAATGGC	.	.	.
TALL_VC087	GAS6-AS1	TFDP1	+/+	+/+	13:113815691	13:113631623	splice-site	splice-site	duplication	downstream	upstream	0	1	0	11	213	low	.	.	.	CTTTTGCCTCCCACCGTGATTCTGAGGCCTCCCCAACCATGTGCAATT|GTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGG___GAAG	.	.	.
TALL_VC087	ARFGAP3	PACSIN2	-/-	-/-	22:42807073	22:42912157	splice-site	splice-site	duplication	upstream	downstream	1	0	0	204	94	low	.	.	.	GAAAATACAGATGAGGCCCAGAAGAAGTTTGGCAATGTCAAGGCCATTTCATCAGATATGTATTTTGGAAGACAATCCCAGGCTGAT___TATGAGACCAGGGCCCGCCTAGAGAGGCTGTCGGCAAGTTCCTCCATAAGCTCGGCTGATCTGTTCGAGGAGCCGAGGAAGCAGCCAGCAG|GTTTGTCTACAGATTTTGAGCGTTCG	out-of-frame	ENTDEAQKKFGNVKAISSDMYFGRQSQADYETRARLERLSASSSISSADLFEEPRKQPA|glstdfer	.
TALL_VC087	GAK	PCGF3	-/-	+/+	4:904637	4:730630	splice-site	splice-site	inversion	upstream	upstream	0	1	0	142	237	low	.	.	.	ATCTTCTACCAGACGTGCCGCGCCGTGCAGCACATGCACCGGCAGAAGCCGCCCATCATCCACAGGGACCTCAAG|GCGTCACAATGTAGCAGGGACCCCAGGCGTCGTGCTCAG...AATGGAAAAAGAGCCAGGGCCGGAAGGAGGGTGCAGAAGCGAGTCCGCGTGCGGAGCCAGGAGGCAGCGTCGCGTGGGAGTGCTGGCCTGAAGCCTCCATGCCCCGGCAGAGGGACGGACACGCGG	out-of-frame	IFYQTCRAVQHMHRQKPPIIHRDLK|asqcsrdprrra	.
TALL_VC087	TRABD	SBF1	+/+	-/-	22:50186001	22:50468461	splice-site	splice-site	inversion	downstream	downstream	0	1	0	176	150	low	.	.	.	CTGAGGAGCGCCGCTGCCTCGCCTCGGTACGCCGCGCGGCGCGGACGGCGC|GGAGTGGGGAAGGCCAGGGCCAGATTCTGCAGCGCTTCCCAGAGAAGGACTGGGAGGACAACCCATTCCCCCAGGGCATCGAGCTG___TTTTGCCAGCCCAGCGGGTGGCAGCTGTGTCCCGAGAGGAATCCA	.	.	.
TALL_VC087	SBF1	TRABD	-/-	+/+	22:50474786	22:50193027	splice-site	splice-site	inversion	upstream	upstream	1	0	0	120	895	low	.	.	.	GCGCGGTCCAGGGCCGGGGCCGGGCCATGAGCGCGCCGTCCTCGAGTCCCCGAGCCGCGGAGCCCGCCCGCGCCCCTCGGGCCGCCCCGCGTCCCTCGCCATGGCGCGGCTCGCGGACTACTTCGTGCTGGTGGCGTTCGGGCCGCACCCGCGCG|GCTCCCCACAGGTGCAGGAAGCCGCCGCCCAGCCATGGACGGGGAGGAGCAGCAGCCACCGCAC	out-of-frame	MARLADYFVLVAFGPHPR|gspqvqeaaaqpwtgrssshr	.
TALL_VC087	CERK	GRAMD4	-/-	+/+	22:46738007	22:46626751	splice-site	splice-site	inversion	upstream	upstream	1	0	0	162	51	low	.	.	.	CCCAGCCTGGCGGACGAGCCCGGCGGCGGAGATGGGGGCGACGGGGGCGGCGGAGCCGCTGCAATCCGTGCTGTGGGTGAAGCAGCAGCGCTGCGCCGTGAGCCTGGAGCCCGCGCGGGCTCTGCTGCGCTGGTGGCGGAGCCCGGGGCCCGGAGCCGGCGCCCCCGGCGCGG|GGAACCCGAGCGTCATGTTAGGGTGAAGCAGAGGACCTCAGT	out-of-frame	MGATGAAEPLQSVLWVKQQRCAVSLEPARALLRWWRSPGPGAGAPGA|gnpsvmlg*	.
TALL_VC087	GRAMD4	CERK	+/+	-/-	22:46626961	22:46721015	splice-site	splice-site	inversion	downstream	downstream	1	0	0	47	181	low	.	.	.	GGCGACTGGAGCAGATGTGGGTCAGCCCCATTCGGTGCTGGAGGCACAGAGGGCCAGGATGCAACCCCTAGCCCCGCACAG___GGAACCCGAGCGTCATGTTAGGGTGAAGCAGAGGACCTCAGTGC...CGGACCTCGCCCCGGGACAGCGAGGAGCTGAGGGACCCT|ATGCCTGCTCTGTGCCTGTATCTGAGATCATCGCCGTTGAGGAAACAGACGTTCACGGGAAACATCAAGGCAGTGGAAAATGGCAG	out-of-frame	RTSPRDSEELRDP|mpalclylrssplrkqtftgnikaveng	.
TALL_VC087	UVSSA	MAEA	+/+	+/+	4:1366431	4:1339074	splice-site	splice-site	duplication	downstream	upstream	0	1	0	55	269	low	.	.	.	AGGACTTTGTGGAGGTCCCTGAGAAGGAGGGGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTATG|TCTCTGCTTTCTATCCGgCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAGA...CACTTCCTGTTGGCCCTGGCCTGGCCGGGGAAGGTGGCAGCGGCACCGGACTGACCTGCAGTGACCCGCGATGCCGCGCCACGAGGGACACTTATGGCTTCATTCGAGAGCTGCT	out-of-frame	DFVEVPEKEGYEPHIPDHLRPEY|vsafypar*	.
TALL_VC087	UVSSA	MAEA	+/+	+/+	4:1355245	4:1332757	splice-site	splice-site	duplication	downstream	upstream	1	0	0	64	182	low	.	.	.	CGAGGACAACCTTGCTCTCATCCACGCCGCCCGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAG___CGCTTCACCCGCGTCGGGACCCACGGTGGATGTTT...ACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGGACGAGGTGCGCCAGGCCATGGGCATGC	out-of-frame	LRKYKELDIEPEGGERhR|tckkalqpsrrepagrgapghgh	.
TALL_VC087	UVSSA	MAEA	+/+	+/+	4:1355245	4:1339074	splice-site	splice-site	duplication	downstream	upstream	1	0	0	64	269	low	.	.	.	CGAGGACAACCTTGCTCTCATCCACGCCGCCCaCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAG___CGCTcCACCCGCGTCGGGACCCACGGTGGATGTTT...ATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCGCAGG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAGAAGTCT	in-frame	LELVLRKYKELDIEPEGGERRR|SLLSIRQDDKVVCPRTKEV	.
TALL_VC087	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1081744	splice-site	splice-site	inversion	downstream	downstream	1	0	0	539	16	low	.	.	.	GGCGCCCCCTGGCTCCCCCGGCCCCCGCGCGGCGTGGAGCCATCTTCCCTCACCTCCTACCGGCACCCTAGCTTGCTCCCGGCCCATGCGGCCCCCGCGGGCTCCCGGCCCCGGCTTC...AGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|AGAACCTGTGGAGTACGTACGCGCACGCGGGGGCGTTTGTGGAGAAGAAAG	out-of-frame	SFVASAYASGRKGAEEAERRARDKQ|rtcgvrtrtrgrlwrr	.
TALL_VC087	SLC12A7	NKD2	-/-	+/+	5:1057471	5:1032152	splice-site	splice-site	inversion	upstream	upstream	0	1	0	63	569	low	.	.	.	GACCTCTTCAGCATGAAGCC|GAGCTGCCCAATGGGGACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTACAGG___TGGCACTCCCCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGGGACAACTCCTCAGCGCAGATGACGGAGAGAGGGCAGCAAACCGCG	out-of-frame	DLFSMKp|scpmgtprrglsgrtsvpyrwhsplrklraastrdnssaqmtergqqt	.
TALL_VC088	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	9	13	12	249	237	high	.	.	duplicates(6),low_entropy(1),mismappers(11),mismatches(8)	AAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGC-ATTTTTCCAG___GCTCCGAGCACAT...ATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCgTACTATATCAAcAAGAgA___ACGTTTATAGTATTGAAaAAAGGGAAAGCAATCTCTCGAgTCAGTGCCACCCCTGCCCTTTACATTTcAA	.	.	.
TALL_VC088	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	14	6	9	406	237	high	.	.	duplicates(3),low_entropy(2),mismappers(8),mismatches(8)	GATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___TggTGgtgCcCTGC...GGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGG	.	.	.
TALL_VC088	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	19	6	1	203	237	high	.	.	duplicates(13),low_entropy(6),mismappers(58),mismatches(11)	GCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG___...GTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGG	.	.	.
TALL_VC088	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	8	4	6	603	237	medium	.	.	duplicates(2),low_entropy(4),mismappers(5),mismatches(5)	GGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAG	.	.	.
TALL_VC088	AC013463.2	SCN2A	+/+	+/+	2:165091299	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	3	1040	237	low	.	.	low_entropy(2),mismappers(2),mismatches(2)	GTAATTTGGAACAAGCAGATCATGCTGTTGCCAAAGGTCTCAAAGTTGAACATGTCATCAATTCCAGCTTCCTTTTTAACATAGGCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACC...GGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGA	.	.	.
TALL_VC088	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	4	10	0	47	57	high	.	.	duplicates(1),mismappers(1),mismatches(1)	GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCC...CCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCGAGGACTACCTGAGAAGCTTCC	.	.	.
TALL_VC088	C22orf24	EIF4ENIF1	-/-	-/-	22:31945233	22:31488745	splice-site	splice-site	deletion	upstream	downstream	3	1	0	262	72	high	.	.	duplicates(3),low_entropy(3),mismatches(1)	CCAGACCCCCAGGCGTGGGAAGATGGAACCAGAACAATTCGAACGAGCAGAGCAAAACAGATCGGAATTGCAGACTTCAGGTCGTGGCAGAGAAAACCAGCTGAGACAGGGCGCCACTTACTAG|GTGCAGAGCATTGTAGACCAAGGAGCCATGGATAGGAGAAGTATGGGTGAAACAGAAAGTGGAGATGCTTTCCTTGACCTGAAGAAGCCTCCTGCCTCCAAATGCCCCCATCGCTATACAAAA___GAAGAACTCTTGGATATAAAAGAACTCCCCCATTCCAAACAGAGGCCTTCATGCCTTTCTGAAAAATATGACAG___TGATGGTGTCTGGGAC...GGACGCTGCT	.	.	.
TALL_VC088	USP11	CDK16	+/+	+/+	X:47233219	X:47223552	splice-site	splice-site	duplication	downstream	upstream	1	1	1	130	244	high	.	.	duplicates(1)	GCTGCGGCGGCTGTGGCGGCGGCAGCGGCGGTGACTGAGGATAGAGAGCCACAGCACGAGGAGCTGCCAGGCCTGGACAGCCAGTGGCGCCAGATAGAAAACGGCGAGAGTGGGCGAGAACGTCCACTGCGGGCCGGCGAAAGCTG|ATCGCCATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACACTCCGAGGTGGCCGAGGCATAGACAAGACCAATGGTGCCCCTGAGCAGATAGGCCTGGATGAGAGTGGTGGTGGTGGCGGCAGTGACCCTGGAGAGGCCCCCACACGTGCTGCTCCTGGGGAACTTCGTTCTGCACGGGGCCCACTCAGCTCTGCACCAG___AGATTGTG	out-of-frame	AAAAVAAAAAVTEDREPQHEELPGLDSQWRQIENGESGRERPLRAGES*|spwig*	.
TALL_VC088	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	18	40	4	182	96	medium	.	.	duplicates(10),low_entropy(1),mismappers(2),mismatches(4)	CCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAG___...CCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTT...TCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTG	.	.	.
TALL_VC088	FRDAP(110396),RNA5SP388(7129)	NRXN3	./.	+/.	14:78170674	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	7	7	1	46	19	medium	.	.	low_entropy(3)	.	.	.	.
TALL_VC088	CDKN2A	MTAP(14876),CDKN2A-AS1(19314)	-/-	./-	9:21993882	9:21947615	splice-site	intergenic	deletion/read-through	upstream	downstream	1	4	0	47	51	medium	.	.	duplicates(1),low_entropy(1),mismappers(1)	GGAGATAACCGCCGGTGGAGGCTTCCCCATTCGGGTTACAACGACTTAGACATGTGGTTCTCGCAGTACCATTGAACCTGGACCTCCCTTCACACAGCCCCTCAATCGTGGGAAACTGAGGCGAACAGAGCTTCTAAACCCACCTCAGAAGTCA|ACTTTTCTCCGCCCCTTCATTTTGAGCCTATAGATGTCACTGCATGTGAGATGGTTCTCTTGAAGACAGCATACCATTGGGCCTTGCTTCTTTATTCAGCTTGCCACTCTGCGCCTTTTAATTGGATCATTTAGCCCATTAGaTTA...TAAAGAGAACTGAAGATAGCCTGAGAAGGACTCCGTACTTCTATATTTGAGTCCTTGTGGAcGAACTGTAACCTAACTTAACAGGTAGACAAGATTGAAAACCTAATTTAGGAGTACGTTCCTGT	.	.	.
TALL_VC088	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21904258	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	2	1	0	65	59	medium	.	.	duplicates(1),low_entropy(1),mismatches(1)	GCGCGCGCCTCCCTACGGGCGCCTCCGGCAGCCCTTCCCGCGTGCGCAGGGCTCAGAGCCGTTCCGAGATCTTGGAGG...CGgGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAACACACAGGCAGCTGGATGTTGAGAGGAGCACATCAGCAGGCACCAGCACACTGGCAGGCCACTGACCAGCAGAACGCC	out-of-frame	RVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg*	.
TALL_VC088	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	4	0	106	334	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	CCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC088	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	4	0	39	18	low	.	.	low_entropy(2)	GGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACAtCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCC	.	.	.
TALL_VC088	TEKT4P2	FP236383.9(1117),FP236383.12(2066)	-/-	./-	21:9068398	21:8443157	exon	intergenic	deletion	upstream	downstream	0	0	4	0	345	low	.	.	low_entropy(1),mismatches(1)	GCACGGTGCT...|...TGTTACACACTCCTTAGCGGATTCCGACTTCCATGGCCACCGTCCTGCTGTCTATATCAACCAACACCTTTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGGTTCAT...CAGCGCCAGTTCTGCTTACCAAAAGTGGCCCACTAGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTACCCATTTAAAGTTTGAGAATAGGTTGAGATCGTTTCGGCCCCAAGACCTCTAATCATTCGCTTTACC	.	.	.
TALL_VC088	MTRNR2L8	SBF2	-/-	-/-	11:10508801	11:10193651	5'UTR	intron	deletion/read-through	upstream	downstream	0	0	4	42	2	low	.	.	duplicates(3),mismatches(2)	AAGGACTAAcCCCTaTACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAgGAGAgCCAAAGCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTtGTAGGTAGAGGCGACAAACCTACCGAGcCTGGTGATAGCTGGTTGTCCAAGAtAGAATCTTAGTTCAACTTTAAATTTgCC...|...GGCCgGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCC	.	.	.
TALL_VC088	NDUFAF5	MACROD2	+/+	+/+	20:13819122	20:14040645	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	4	11	0	low	.	.	mismappers(1),mismatches(2)	CTCTACTCTGGCTATCCCAAAAAAA[a]GCTCCATTTGTTTAAAAAAATTAAGTAAATCAAACACAGCTAATTGAGGACCCTTATTGTTTAATGTGAGTGATTGTAGTGAAAACACTTATTTTAGTGT...|...GTGAAGTCCT	.	.	.
TALL_VC088	CPA4	CPA4(15133),CPA5(5503)	+/+	./+	7:130312122	7:130339313	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	0	209	4	low	.	.	.	GGAATTTCAAGGGCTTCATCGACCTGCACAGCTACTCGCAGCTGCTGATGTATCCATATGGGTACTCAGTCAAAAAGGCCCCAGATGCCGAGGAACTC___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GGTTACACAGCACATCATATGAAGAGTCAGAGTTCTACAAGACTTGTTATAAAAAGCAACAGAGTCCTGCTCCTCGCTTTCGTGCCAGGTCTTG	out-of-frame	NFKGFIDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLAAKALASVSGTEYQVGPTCTTV|wlhstsyeesefyktcykkqqspaprfrars	.
TALL_VC088	ELF2	RP11-371F15.3	-/-	-/-	4:139029294	4:138996020	intron	splice-site	deletion/read-through	upstream	downstream	0	1	2	16	3	low	.	.	duplicates(1),mismappers(4),mismatches(4)	GTTAGGCTGCCTGAATCCAAATCCTGGCTCCACTGTTTACTAATAGGATCCTGAATAACTTATTTACCTCTCTGCTTCTTCATTATCTTCTTCATATAG|TTACATCTTCCTGAGGATAGAGCCTACtTAGAAGTTCAGCAAATATCTGGTCTTTTCCACACCTGGGAAGATGTGGGTATAGGCCACTATGTGTTTTCCTTTCAAAATGGTAAGTTCATCTTGATTTTTTTTATCTGTTTTGGGGGTAGGACAGAGACACTCTTC	.	.	.
TALL_VC088	EEF1A1P13	DNAH5	-/-	-/-	5:14652236	5:13909064	exon	intron	deletion	upstream	downstream	0	0	3	29	1	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	GGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCCA...|...TTTGGTTTGCCAA	.	.	.
TALL_VC088	TTTY15	USP9Y	+/+	+/+	Y:12664686	Y:12709388	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	251	55	low	.	.	.	GGGAGATAGGAGTGTCTCAGGAGAGACCTGGCCGAAAACCGCGAGAAAGAAAAGTGAAGCCTAGTGAAACTGCCTTTGCAGTGACTCAAGAAAAACTCATCACCTGGAGTCCGTGTAAGCTCGGCGACAGCCCTAGCAGCGAGGCCAAAACAG___TTTGGGAAGAAAGAAAACCTAAAGTATTTGCCGTTGGTGATTCAAGG|GATAACTACATAAAGAGACAAAAAAAAGAAAAAAGAGCAAAGATCTGTGCTGTGTCAAGTATGACAGCCATCACTCATGGCTCTCCAGTAGGAGGGAACGACAGCCAGGGCCAGGTTCTTGATGGCCAGTCTCAGCATCTCTTCCAAC	.	.	.
TALL_VC088	TTTY15	USP9Y	+/+	+/+	Y:12686606	Y:12709388	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	2	156	55	low	.	.	duplicates(3)	AGCGAGGCCAAAACAG___TTTGGGAAGAAAGAAAACCTAAAGTATTTGCCGTTGGTGATTCAAGG___GAATCAAACTTGACGTATGGAGCCAAGAAAGCCCTTGGAAAAACTGGCCTCATATTTTGTGTACACAGTCCCTGTACAGGGTTTCTGACCTGTG|GATAACTACATAAAGAGACAAAAAAAAGAAAAAAGAGCAAAGATCTGTGCTGTGTCAAGTATGACAGCCATCACTCATGGCTCTCCAGTAGGAGGGAACGACAGCCAGGGCCAGGTTCTTGATGGCCAGTCTCAGCATCTCTTCCAACAGAACCAG___AGATGGGGTTTTAC	.	.	.
TALL_VC088	TTTY15	USP9Y	+/+	+/+	Y:12686606	Y:12707760	splice-site	intron	deletion/read-through	downstream	upstream	0	0	2	156	14	low	.	.	duplicates(2),mismappers(1)	CTAAAGTATTTGCCGTTGGTGATTCAAGG___GAATCAAACTTGACGTATGGAGCCAAGAAAGCCCTTGGAAAAACTGGCCTCATATTTTGTGTACACAGTCCCTGTACAGGGTTTCTGACCTGTG|GTGGAGTCTCACTCTGTCGCCCAGACTAGAGTGCAGTTGTGTGATCTCAGCTCACTGCAAGCTCTGTCTCCCAGGTTCACACCATCCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACAACAG___GTATTAAATTTTCA	.	.	.
TALL_VC088	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	12	144	low	.	.	.	CGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAG	.	.	.
TALL_VC088	TRIM62	CSMD2	-/.	-/.	1:33175242	1:33581342	intron	intron	deletion	downstream	upstream	0	0	2	3	1	low	.	.	low_entropy(1),mismappers(1)	.	.	.	.
TALL_VC088	C6orf183	CCDC162P	+/+	+/+	6:109270176	6:109285976	exon	splice-site	deletion/read-through	downstream	upstream	1	1	0	12	4	low	.	.	.	TCTTCCTTTAGCTTTTGCTGCATTCAGGAGTGGAAAATATGCAGGTGACTCTTGCATGCCAAGCTGCTCAGAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGCACCCCTCAAGGGAGCTGTCCTGCTAATGTCAAG|GATGAAATTGGAAAAGTCAAGAGAGATGTTATGGTTG...CACCGCATGTCTCACTATGCTCTTCGGGGTCAGATCATGGCATACTGCAATAGCCTGAGAGATCTTCTGGAAGATTTTCCTACCATCAGGGACACCTTTTTCATGGTAGGGCAACCACAAGAGAAG	.	.	.
TALL_VC088	TRIP12	SCAI	-/-	-/-	2:229813870	9:125066058	splice-site	splice-site	translocation	upstream	downstream	2	0	0	120	109	low	.	.	.	CG___GGTGGTTTGGCAGACTGCTTGCTGTACCTAGAATTCTTCAGCATAAATGCCCAAAGAAATGCATTAGCAATTGCAGCTAATTGCTGCCAGAGTATCACGCCAGATGAATTTCATTTTGTGGCAGATTCACTCCCATTGCTAACCCAAAGGCTAACACATCAG|TATCAGAGGTTCTGGTGATAGCAGTCATTCACAATCTCAAGGGGAAAGATATC	out-of-frame	GGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTHQ|yqrfw*	.
TALL_VC088	CLASRP	CHFR	+/+	-/-	19:45040311	12:132861634	splice-site	splice-site	translocation	downstream	downstream	0	2	0	489	209	low	.	.	.	CGGAGCGGAGACGGGAGTATTATGAAAAGATC|GGTCTGGGGGTGGTGGCATCTCCCCTAAAGGAAGTGGTCCCTCTGTGGCAAGTGATGAAGTCTCCAGCTTTGCCTCAGCTCTCCCAGACAGAAAGACTGCGTCCTTTTCGTCGTTGGAACCCCAGGATCAGGAGGATTTGGAGCCCGTGAAGAAGAAAATGAGAGGAG___ATGGGGACCTTGACCTGAACGGGCAGTTGTTGGTCGCACAACCGCGTAGAAATGCC	out-of-frame	ERRREYYEKI|glgvvasplkevvplwqvmkspalpqlsqterlrpfrrwnprirriwsp*	.
TALL_VC088	GPBP1L1	ZRANB2	-/-	-/-	1:45640210	1:71072548	splice-site	splice-site	duplication	upstream	downstream	0	2	0	268	1223	low	.	.	.	TAAGCCTGTACCACCTCCTTCCAAG|GATATGGTGGTGGTTTTAATGAAAGAGAAAATGTTGAATATATAGAAAGAGAAGAATCTGATGGTGAATATGATGAG___TTTGGACGTAAAAAGAAAAAATACAGAGGGAAAGCAGTTGGTCCTGCATCTATATTAAAGGAAGTTGAAGATAAA	out-of-frame	KPVPPPSK|dmvvvlmkekmlni*	.
TALL_VC088	POLE	CHFR	-/-	-/-	12:132687254	12:132861634	splice-site	splice-site	duplication	upstream	downstream	0	2	0	128	209	low	.	.	.	GCCAACGGCTCCATGTCTCTGAGGAGCGGCGGGCGGCGGCGCGCGGACCCAGGCGCGGATGGCGAGGCCAGCAG|GGTCTGGGGGTGGTGGCATCTCCCCTAAAGGAAGTGGTCCCTCTGTGGCAAGTGATGAAGTCTCCAGCTTTGCCTCAGCTCTCCCAGACAGAAAGACTGCGTCCTTTTCGTCGTTGGAACCCCAGGATCAGGAGGATTTGGAGCCCGTGAAGAAGAAAATGAGAGGAG___ATGGGGACCTTGACCTGAACGGGCAGTTGTTGGTCGCACAgCCGCGTAGAAATGCCC	out-of-frame	MSLRSGGRRRADPGADGEASr|vwgwwhlp*	.
TALL_VC088	TOX	KAT6A	-/-	-/-	8:59118886	8:42049302	splice-site	splice-site	deletion	upstream	downstream	0	1	1	225	112	low	.	.	duplicates(1)	TTTTTAAAAAAGGAAAAAGAAAAGGAGTTGCTTGATGTGAGAGTGAAATGGACGTAAGATTTTATCCACCTCCAGCCCAGCCCGCCGCTGCGCCCGACGCTCCCTGTCTGGGACCTTCTCCCTGCCTGGACCCCTACTATTGCAACAAG|GCATAAGATGCACATTTTTCTGCTCTGGAGCCGGGAATGAAATATTCTTGAGTTCTTACAACTTTATGACGAGACCCATGTGTGGTGCTATTGAGAAATTCATTGGGAAGTTGGAAGACATTTCAAaCAACAGGTTGTTTTGGTTTCTATAGTACAATTG	out-of-frame	MDVRFYPPPAQPAAAPDAPCLGPSPCLDPYYCNK|a*	.
TALL_VC088	SNRNP70	CTD-3138B18.4	+/+	+/+	19:49090520	19:58285717	splice-site	splice-site	deletion	downstream	upstream	0	2	0	1393	43	low	.	.	.	AGACGGGAAAAGATTGAGCGGCGACAGCAAGAAGTGGAGACAGAGCTTAAAATGT|GAACCAGTGACCTTCCGGGATGTGGCTGTGGACTTTACCCAGGAGGAATGGGGGCAGCTGGACCCTACCCAGAGGATCCTCTACCGTGACGTGATGCTGGAGACCTTTGGTCACCTGCTCTCCATAG___GTCCTGAGCTTCCGAAGCCTGAAGTCATCTCCCAGCTGGAGCAAGG	out-of-frame	RREKIERRQQEVETELKM|*	.
TALL_VC088	DPYD	HNRNPH3	-/-	+/+	1:97098489	10:68341978	splice-site	splice-site	translocation	upstream	upstream	1	0	1	50	2636	low	.	.	.	AAACTGCCAAGTTTTGGACCTTATCTGGAACAGCGCAAGAAAATCATAGCAGAAAACAAGATTAGACTGAAAGAACAAAATGTAGCTTTTTCACCACTTAAGAGAAACTGTTTTATCCCCAAAAGGCCTATTCCTACCATCAAG|GCCGTGGTGGTGGAGGCAGTGGAGGTTACTATGGGCAAGGCGGCATGAGTGGAGGTGGATGGCGTGGGATGTACTGAAAGCAAAAACACCAACATACAAGTCTTGAC...TTTAATTTCTTTTGTATTTTAAGAACTTTATAATGACTGAAGGAATGTGTTTTCAAAATATTATTTGGTAAAGCAACAGATTGTGATGGGAAAATGTTTTCTGTAGGTTTATTTGTT	out-of-frame	KLPSFGPYLEQRKKIIAENKIRLKEQNVAFSPLKRNCFIPKRPIPTIK|avvveavevtmgkaa*	.
TALL_VC088	PAIP2	MATR3	+/+	+/+	5:139341980	5:139307239	splice-site	splice-site	duplication	downstream	upstream	0	2	0	410	491	low	.	.	duplicates(1)	GGGGGAGCGGCGCTGCCTGTGGAGATCCGCGGAGGCCGACAGGATTCGTTGGCTGCCGTCCCCGCTGCTGTGCATTGG|AGTTGTCTGCTGGTTCTCAGCTTGAAGAAGATTCTGCAGTCCTTATTG...TTGGCCGTCTTTAAAAAAATTTTTTTTTTTAATCTATAAAATAGACAAGAGCTAGTTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTCAGTAGGGACTCACAGGGTCATGGGCGTGACCTGTCTGCGGCAGGAATAGGCCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGC	.	.	.
TALL_VC088	PAIP2	MATR3	+/+	+/+	5:139341980	5:139307239	splice-site	splice-site	duplication	downstream	upstream	0	2	0	410	491	low	.	.	duplicates(1)	GGGGGAGCGGCGCTGCCTGTGGAGATCCGCGGAGGCCGACAGGATTCGTTGGCTGCCGTCCCCGCTGCTGTGCATTGG|AGTTGTCTGCTGGTTCTCAGCTTGAAGAAGATTCTGCAGTCCTTATTG...TTGGCCGTCTTTAAAAAAATTTTTTTTTTTAATCTATAAAATAGACAAGAGCTAGTTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTCAGTAGGGACTCACAGGGTCATGGGCGTGACCTGTCTGCGGCAGGAATAGGCCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGC	.	.	.
TALL_VC088	SYNGAP1	PHF1	+/+	+/+	6:33425903	6:33412248	splice-site	splice-site	duplication	downstream	upstream	1	0	0	84	228	low	.	.	.	AGCAGGTCTCGAGCCTCCATCCATCGGGGGAGCATCCCCGCGATGTCCTATGCCCCCTTCAGAG___ATGTACGGGGACCCTCTATGCACCGAACCCAATACGTTCATTCCCCGTATGATCGTCCTGGT...CGAGTCCAGTCGCAACAAACTGCTGAGACGCACAGTCTCCGTGCCGGTGGAGGGGCGGCCCCACGGCGAGCATG|GCCCCCCCAGGATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGCC	out-of-frame	ESSRNKLLRRTVSVPVEGRPHGEH|gpprmqwrsppg*	.
TALL_VC088	SYNGAP1	PHF1	+/+	+/+	6:33441759	6:33412698	splice-site	splice-site	duplication	downstream	upstream	0	1	0	175	352	low	.	.	.	GGCTACATGATGCGGGACCTCAACAG|CTGCCCTCCCTGGAGAGGAACTCCTCTGTTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGCTGGTCAGCTGTGAGAAGTGTCGCCATG___CTTATCACCAGGACTGCCATGTTCCCAGGGCTCCAGCCCCTGGAGAGGGAGAGGGCACATCCTGGGTATGCCG	out-of-frame	GYMMRDLNs|cppwrgtpllclsl*	.
TALL_VC088	ATXN2	DHX8	-/-	+/+	12:111470108	17:43490391	splice-site	splice-site	translocation	upstream	upstream	1	0	0	66	106	low	.	.	.	ACGCAATATGTTGCCTACAGTCCTCAGCAGTTCCCAAATCAGCCCCTTGTTCAGCATGTGCCACATTATCAGTCTCAG___CATCCTCATGTCTATAGTCCTGTgATAgAGGGTAATGCTAGAATGgTG...AACTCAGTACGGGGCTCATGAGCAGACGCATGCGATGTATG|GATTCTCTTATTAGTAACTTGCTGCGgCTCATACAAACCATGCGGCCTCCAGCGAAGCCTTCCACTAGCAAAG___ATCCAGTTGT	out-of-frame	TQYGAHEQTHAMY|gfsy*	.
TALL_VC088	TSNARE1	PTP4A3	-/-	+/+	8:142343966	8:141421388	splice-site	splice-site	inversion	upstream	upstream	0	1	0	38	165	low	.	.	.	AAGACCTTCTCTTGCCAGGCCCTGCCCTCCGAGaGCTTCAGTCTGGAGCCGCCCAGAG|ATGCTGTGTGCTGTGGACCCACCTGGGGTTCATGGAGTGGGCCACGGGGCCCAGCCCTAAGCACTGC...GCGCCCAGGGTCGCCGCGCCTCCTGCTGAGGGGTCCCCGTGCCACTGGCTCTCACCATTGCCCTCGCCTGCCGATGGCCTCTGCTGCCCAGCCTGGGGCCAGCTCTACCGCCTGAGCCCCCTGCCC	out-of-frame	KTFSCQALPSEsFSLEPPR|davccgptwgswsgprgpalst	.
TALL_VC088	TSNARE1	PTP4A3	-/-	+/+	8:142330901	8:141421388	splice-site	splice-site	inversion	upstream	upstream	0	1	0	35	165	low	.	.	.	GTGACCTCCTTGGAGCGGAGCCTTCAGTCCTTAGGGACACCGAGTGACACGCAGGAGCTTCGGGACAGCCT|ATGCTGTGTGCTGTGGACCCACCTGGGGTTCATGGAGTGGGCCACGGGGCCCAGCCCTAAGCACTGCTGCGCCCAGGGTCGCCGCGCCTCCTGCTGAGGGGTCCCCGTGCCACTGGC	out-of-frame	VTSLERSLQSLGTPSDTQELRDSl|ccvlwthlgfmewatgpspkhccaqgrrasc*	.
TALL_VC088	PDCD6	NDST2	+/+	-/-	5:304221	10:73808729	splice-site	splice-site	translocation	downstream	downstream	1	0	0	44	192	low	.	.	.	GCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG___GCACGTGGACTCCCTTTAATCCAGTGACTGTCAGGTCGATCATAT|GTAGAGGGGAAGAGATTGAACTTTGCTGACCTTTGATGTGAGGCGCTCAGCCAGGGCCAAGGGGAGAGCCTGGCAAGATTTGCAGCCTGA	out-of-frame	FLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSII|crgeeielc*	.
TALL_VC088	TIPARP	GMPS	+/+	+/+	3:156674796	3:155893518	splice-site	splice-site	duplication	downstream	upstream	0	1	0	67	92	low	.	.	.	TGATCTCCGGCGCGGGCACTGCTTTCCACTCGGCTCCTGTCGTCCGTTCTCTCAGGCTCCCGTTCAG|CTGGAGAATGCTGGAGGAGACCTTAAGGATGGCCACCACCACTATGAAGGAGCTGTTGT...GCTCCCTGGTTTGATCCAGCAATATTCACTATTGGCAAGCCTGTTCTTGGAATTTGCTATGGTATGCAG___ATGATGAATAAGGTATTTGGAGGTACTGTGCACAAAAAAAGTGTCAGAGAAGATGG	.	.	.
TALL_VC088	GAK	MAEA	-/-	+/+	4:911673	4:1332757	splice-site	splice-site	inversion	upstream	upstream	0	1	0	112	122	low	.	.	.	GTTTTGTTCTGCAGCGTCTATAGGAAAAGAGGAGTCAGACACGGGGCAGGCTGAGTTCCTCTTGCTCACAGAGCTCTGTAAAG|ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGGACGAGGTGCGCCAGGCCATGGGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCGTACAAG___GACCTTCTGGACCCTGCACGGTGGCGGATGCTGA	out-of-frame	FCSAASIGKEESDTGQAEFLLLTELCK|dmqestsakqkgaswtrcarpwacwpsrptrtsprtrtfwtlhgggc	.
TALL_VC088	GAK	MAEA	-/-	+/+	4:913607	4:1332757	splice-site	splice-site	inversion	upstream	upstream	0	1	0	94	122	low	.	.	.	AGGAGGGTTTGCATTTGTGTATGAAGCTCAAGATGTGGGGAGTGGCAGAGAGTATGCATTAAAG|ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGGACGAGGTG...AACAATTCTGTGTTCACCCTCACCCTGCAGGCTGGCCTCTCAGCCATCAAGACACCGTATCCTACCTCCCGTGCGCAGTGCGGTTTGGCCTGGGGTTGGCATCTTTGGTCATATTTT	out-of-frame	GGFAFVYEAQDVGSGREYALK|tckkalqpsrrepagrg	.
TALL_VC088	MAEA	GAK	+/+	-/-	4:1315600	4:894009	splice-site	splice-site	inversion	downstream	downstream	1	0	0	101	136	low	.	.	.	AGAACATTGACCGGGAGACCAGCCACGTCACCATGGTGGTGGCCGAGCTGGAGAAGACGTTGAGCGGCTGCCCCGCCGTGGACTCCGTGGTCAGCCTGCTGGACGGCGTGGTGGAGAAGCTCAGCG...GATGGTGGAGCACCTGCTGCGTTGCGGCTACTACAACACGGCTGTCAAGCTGGCGCGCCAGAGCGGCATCGAG|GCCCTGGGCTGCATCTTGTACCTGCTGTGCTTCCGGCAGCACCCTTTTGAGGA	in-frame	MVEHLLRCGYYNTAVKLARQSGIE|ALGCILYLLCFRQHPFE	.
TALL_VC088	PDCD6	RP11-574K11.31	+/+	-/-	5:304221	10:73808729	splice-site	splice-site	translocation	downstream	downstream	1	0	0	44	192	low	.	.	.	GCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG___GCACGTGGACTCCCTTTAATCCAGTGACTGTCAGGTCGATCATAT|GTAGAGGGGAAGAGATTGAACTTTGCTGACCTTTGATGTGAGGCGCTCAGCCAGGGCCAAGGGGAGAGCCTGGCAAGATTTGCAGCCTGA	out-of-frame	FLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSII|crgeeielc*	.
TALL_VC088	PSMD1	KLHL12	+/+	-/-	2:231057041	1:202909124	splice-site	splice-site	translocation	downstream	downstream	0	1	0	75	173	low	.	.	.	CGGCGAGCGAGCCGACGGGCGAGTGAGGGGCGCAGCCATGATCACCTCGGCCG|CCTTTCATCCGCTGTAGTTTACAATGCAGGGATCTGGTTGATGAAGCAAAGAAGTTTCATCTGAGGCCTGAAC...GCCTAG___GAGCCAATGAAGTGCTTTTGGTGGTTGGGGGCgTTGGAAGCCAGgAGTCTCCCATTtATGTGGTAGAGAAATATGACCCCAAGACTCAGGAGTGGAG	out-of-frame	MITSA|afhpl*	.
TALL_VC088	TSPAN3	FAM65B	-/-	-/-	15:77070892	6:24875817	splice-site	splice-site	translocation	upstream	downstream	1	0	0	126	135	low	.	.	.	GCCGCCGCCATTGCCGCTCTCTCGGTGAGCGCAGCCCCGCTCTCCGGGCCGGGCCTTCGCGGGCCACCGGCGCCATGGGCCAGTGCGGCATCACCTCCTCCAAGACCGTGCTGGTCTTTCTCAACCTCATCTTCTGG|GACTACCGACCAGACTCCCGGAAATCATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAG	out-of-frame	MGQCGITSSKTVLVFLNLIFW|dyrpdsrkscw*	.
TALL_VC088	CTDP1	NFATC1	+/+	+/+	18:79718016	18:79410403	splice-site	splice-site	duplication	downstream	upstream	1	0	0	56	47	low	.	.	.	CCCACCGCCTTGTTCCACCCGATGCCGGTTCTTCCCAAGGCCCAGCCTGGCCCCGAGGTTCGGATCTACGACTCCAACACGGGGAAGCTCATCAGGACGGGCGCCCGGGGGCCCCCAGCACCCTCC...ACCCATCCGCCAGGAGCCCTCTTCCTTCAG|AgCACTATGGCTATGCATCCTCCAACGTCAGCCCCGCCCTGCCGCTCCCCACGGCGCACTCCACCCTGCCGGCCCCGTGCCACAACCTTCAGAC	out-of-frame	PIRQEPSSFr|alwlcilqrqprpaaphgalhpagpvpqps	.
TALL_VC088	CTDP1	NFATC1	+/+	+/+	18:79718016	18:79467450	splice-site	splice-site	duplication	downstream	upstream	1	0	0	56	145	low	.	.	.	CTCTTCCCGCTCAGGGACGATCACACCAAGGCACAGAG___GGAGAACAGCCCTGCGGCCTTTCCCGACCGGGAGGGTGTGCCCCCCACCGCCTTGTTCCACCCGATGCCGGTTCTTCCCAAGGCCC...CAGCACCCTCCAGCTCCCTACCCATCCGCCAGGAGCCCTCTTCCTTCAG|AATTCTCTGGTGGTTGAGATCCCGCCgTTTCGGAATCAGAGGATAACCgGCCCCGTTCACGTCAGTTTCTACGTCTG	out-of-frame	APSSSLPIRQEPSSFr|ilwwlrsrrfgirg*	.
TALL_VC088	LMNB2	CSNK1G2	-/-	+/+	19:2456670	19:1969508	splice-site	splice-site	inversion	upstream	upstream	0	1	0	30	422	low	.	.	.	GGCTCCTGCTCAAGATCTCAGAGAAGGAGGAGGTGACCACGCGCGAG|CTGTGAGCCGTGAGCTTTGAGGCGGTGGGATGTGTCAGCAGAATGTCTCCTGCCCCCGAGAGCGACCCCGAGGCCACTGAGAAGAGCAGCGCGGCCTGGCCGGCCCGAACGCCTGCGTCTCAGTAGCTGGGAGCCACGGGCCCACGCCCGCCCAC	out-of-frame	LLLKISEKEEVTTRE|l*	.
TALL_VC088	KDM4B	TCF3	+/+	-/-	19:5041251	19:1650287	splice-site	splice-site	inversion	downstream	downstream	1	0	0	82	148	low	.	.	.	GGCCTCTTCACGCAGTACAATATCCAGAAGAAGGCCATGACAGTGGGCGAGTACCGCCGCCTGGCCAACAGCGAGAA___GTACTGTACCCCGCGGCACCAGGACTTTGAcGACCTTGAACGCAAATAC...GGCTCTTTGTATGATGAC|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCaCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAG	out-of-frame	GSLYDD|gfqa*	.
TALL_VC088	KDM4B	TCF3	+/+	-/-	19:5047669	19:1650287	splice-site	splice-site	inversion	downstream	downstream	1	0	0	78	148	low	.	.	.	CACCGGGCGGGCCTGGCCAAG___GACGTGGCCCAGTGGAACATCGGGAGCCTCCGGACCATCCTGGACATGGTGGAGCGCGAGTGCGGCACCATCATCGAGGGCGTGAACACGCCCTACCTGTACTTC...GACCACCTTCGCCTGGCACACCGAGGACATGGACCTGTACAGCATCAACTACCTGCACTTTGGGGAGCCTAAGTCCTG|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAG	out-of-frame	TTFAWHTEDMDLYSINYLHFGEPKSw|vsrpevpalapge*	.
TALL_VC088	FBRSL1	ULK1	+/+	+/+	12:132508350	12:131906892	splice-site	splice-site	duplication	downstream	upstream	0	1	0	149	291	low	.	.	duplicates(1)	GGTCCCACTGCAGCCCTCCAAGCAG|GAAATGGCTAATTCTGTCTACCTGGTTATGGAG___TACTGCAACGGTGGGGACCTGGCCGACTACCTGCACG___CCATGCGCACGCTGAGCGAGGACACCATCAGGCTCTTCCTGCAGCAGATCGCGGGCGCCATGCGGCTTCTGCACAGCAAAG	in-frame	VPLQPSKQ|EMANSVYLVMEYCNGGDLADYLHAMRTLSEDTIRLFLQQIAGAMRLLHSK	.
TALL_VC088	FBRSL1	ULK1	+/+	+/+	12:132508350	12:131908644	splice-site	splice-site	duplication	downstream	upstream	1	0	0	149	374	low	.	.	.	GGAAACCTGCCCCCCTGCGGAGCCCAGTGAGAACAGGCGGCCCCTGGAGGCAGGCAGCCCCGGGCAGGACCTCGAACCCGCCTGCGATGGGGCGAGAAAGGTCCCACTGCAGCCCTCCAAGCAG|CCATGCGCACGCTGAGCGAGGACACCAT	out-of-frame	ETCPPAEPSENRRPLEAGSPGQDLEPACDGARKVPLQPSKQ|pcar*	.
TALL_VC088	SUSD1	PTBP3	-/-	-/-	9:112080074	9:112330474	splice-site	splice-site	duplication	upstream	downstream	1	0	0	27	26	low	.	.	.	GAACAAGTGCCTGTAGTGTGTTTGGATCTGTACCCTACGACTGATTATACGGTGAATGTGACCCTGCTGAGATCTCCTAAGCGGCACTCAGTGCAAATAACAATAGCAACTCCCCCAGCAG___TAAA...AGAAGCATCAAGACAGCTGATATGGAGGAGATGTATTTA|TGTTGTTACAGATCTTATAACAGTCGGTTTAAAG___CGGGGATCTGATGAGCTTCTTTCTTCTGGCATCATTAACGGACCTTTTACCAT	out-of-frame	RSIKTADMEEMYL|ccyrsynsrfkagi*	.
TALL_VC088	RANBP2	G3BP2	+/+	-/-	2:108773046	4:75655870	splice-site	splice-site	translocation	downstream	downstream	1	0	0	586	262	low	.	.	.	GTTGAAGAGAAGGCAAAAGCAGATACGTTAAAACTTCCACCTACATTTTTTTGTGGAGTCTGTAGTGATACTGATGAAGACAATGGAAATGGGGAaGACTTTCAATCAGAGCTTCAAAAAGTTCAGGAAGCTCAA|AATCAGAAGATGAAGTAGAAGAGGAACAAGAAGAAAGACAACCATCTCCTGAACCTGTGCAAGA	out-of-frame	VEEKAKADTLKLPPTFFCGVCSDTDEDNGNGEDFQSELQKVQEAQ|nqkmk*	.
TALL_VC088	FGFR1	KAT6A	-/-	-/-	8:38457356	8:42049707	splice-site	splice-site	duplication	upstream	downstream	1	0	0	428	68	low	.	.	.	CGGAACCTCCACGCCGAGCGAG___GGTCAGTTTGAAAAGGAGGATCGAGCTCACTGTGGAGTATCCATGGAGATGTGGAGCCTTGTCACCAACCTCTAACTGCAGAACTGGGATGTGGAGCTGGAAGT...GTGCTGGTCACAGCCACACTCTGCACCGCTAGGCCGTCCCCGACCTTGCCTGAACAAG|GATTCTTTCTACTAATCCAGATACTTGTTGAAGTGCTGACTAGTTTCTTGGGGAAAGATGTCAAGGAA	out-of-frame	VLVTATLCTARPSPTLPEQ|gfflliqilvevltsflgkdvk	.
TALL_VC088	FGFR1	KAT6A	-/-	-/-	8:38457356	8:42049302	splice-site	splice-site	duplication	upstream	downstream	0	1	0	428	112	low	.	.	.	CTGGGATGTGGAGCTGGAAGTGCCTCCTCTTCTGGGCTGTGCTGGTCACAGCCACACTCTGCACCGCTAGGCCGTCCCCGACCTTGCCTGAACAAG|GCATAAGATGCACATTTTTCTGCTCTGGAGCCGGGAATGAAATATTCTTGAGTTCTTACAACTTTATGACGAGACCCATGTGTGGTGCTATTGAGAAATTCATTGGGAAGTTGGAAGACATTTCAA	out-of-frame	MWSWKCLLFWAVLVTATLCTARPSPTLPEQ|girctffcsgagneiflssynfmtrpmcgaiekfigkledis	.
TALL_VC088	TBCD	FOXK2	+/+	+/+	17:82884202	17:82563354	splice-site	splice-site	duplication	downstream	upstream	0	1	0	302	87	low	.	.	.	CTCAGGAGCTGAAGCCCTTTGTGACTGCAATCTCGAG___TGCACTGGTGATTGCTGCGGTGTTTGACCGAGACATAAACTGCAGAAGAGCAGCCTCT|GTGCACATTCAGGTTCCCGAGCACAAACATCAAGATAACGTTCACTGCCCTGTCCAGCGAGAAGAGAGAGAAGCAGGAGGCGTCTGAGTCTCCAGTGAAGGCCGTACAGCCACACATCTCGC	out-of-frame	QELKPFVTAISSALVIAAVFDRDINCRRAAS|vhiqvpehkhqdnvhcpvqreereaggv*	.
TALL_VC088	TBCD	FOXK2	+/+	+/+	17:82772507	17:82563354	splice-site	splice-site	duplication	downstream	upstream	0	1	0	77	87	low	.	.	.	TGCtGTCCTACTTGATTGTCAGTGACAAGGCCCGAGATGCAGCTGCTGTCCTTGTGTCCAG|GTGCACATTCAGGTTCCCGAGCACAAACATCAAGATAACGTTCACTGCCCTGTCCAGCGAGAAGAGAGAGAAGCAGGAGGCGTCTGAGTCTCCAGTGAAGGCCGTACAGCCACACATCTCGCCCCTGACCATCAACATTCCAGACACC	in-frame	lSYLIVSDKARDAAAVLVSr|CTFRFPSTNIKITFTALSSEKREKQEASESPVKAVQPHISPLTINIPD	.
TALL_VC088	TBCD	FOXK2	+/+	+/+	17:82797802	17:82601303	splice-site	splice-site	duplication	downstream	upstream	1	0	0	62	88	low	.	.	.	GCAAAGCAAGATGGCTGAGTTCCTGGACTGGAGCCTGTGCAATCTGGCCCGTTCCTCCTTCCAGACCATGCAGGGGGTCATCACCATGGATGGGACGCTGCAGGCCCTG___GCACAAATATTTAAACATGGAAAACGTGAAGACTGTTTGCCCTATG|CCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAAGCGCCACA	in-frame	QSKMAEFLDWSLCNLARSSFQTMQGVITMDGTLQALAQIFKHGKREDCLPY|aAASPLHMLATHASASASLPTKRH	.
TALL_VC088	AZIN1	PPP3R1	-/-	-/-	8:102838744	2:68181010	splice-site	splice-site	translocation	upstream	downstream	0	1	0	396	496	low	.	.	.	CTGACATGTGACAATGAAATTGAATTGAAGAAAATTGCACGTAATCACCCAAATGCCAA|GTTGTAGGTGGCCTAGATATCCACAAAAAGATGGTGGTAGATGTGTGACTCTTATCAGAGAGTACCACCCAACACTTTTGCTTTCTTCTCCATCTCTGAAGATCTGCTCAAGACGTCCAGC	out-of-frame	LTCDNEIELKKIARNHPNAk|l*	.
TALL_VC088	NOTCH1	ADRBK1	-/-	+/+	9:136544024	11:67277272	splice-site	splice-site	translocation	upstream	upstream	0	1	0	53	680	low	.	.	.	GAAGCGGCCAATGGCACGGAGGCCTGCGT|CATCCGCAGTGTCATGCAGAAGTACCTGGAGGACCGGGGCGAGGTGACCTTTGAGAAGATCTTTTCCCAGAAGCTGG___GGTACCTGCTCTTCCGAGAC...GAATTCTATGAGGAG___ATCAAGAAGTACGAGAAGCTGGAGACGGAGGAGGAGCGTGTGGCCCGCAGCCGGGAGATCTTCGACTCATACATCATGAAGGAGCTGCTGGCCTGCTCaCAT	in-frame	EAANGTEACv|IRSVMQKYLEDRGEVTFEKIFSQKLGYLLFR	.
TALL_VC088	PUM2	C2orf43	-/-	-/-	2:20294376	2:20774979	splice-site	splice-site	duplication	upstream	downstream	0	1	0	157	20	low	.	.	.	GCGGCAAATAACACAGCCAGTCAGCAAGCAGCATCACAAGCTCAGCCTGGACAGCAACAG|ATTCAAACGCTCAAGAAATTAAGGACATTTATGGACTAAATGGACAAATAGAGCACAAACTAGCTTTCCTGAGAACTCATGTGCCAAAGGACATGAAACTTGTGCTCATTGGCCATTCAATAGGCAGCTATTTCACACTTCAGATGCTGA	out-of-frame	AANNTASQQAASQAQPGQQQ|iqtlkklrtfmd*	.
TALL_VC088	GAK	PCGF3	-/-	+/+	4:904637	4:743474	splice-site	splice-site	inversion	upstream	upstream	1	0	0	154	285	low	.	.	.	GTGGAACTGGGCGAGCTGCGGCTGCGGGTGCGGCGGGTCCTGGCCGAAG___CTGGTGGAATTTTTGAAGAAAATGGAATCTCGAGGCCCCCTTTCGTGCGACACGGTTCTGAAGATCTTCTACCAGACGTGCCGCGCCGTGCAGCACATGCACCGGCAGAAGCCGCCCATCATCCACAGGGACCTCAAG|CGGAAATGAGAAAGCAGAGGGAGTT	in-frame	VELGELRLRVRRVLAEAGGIFEENGISRPPFVRHGSEDLLPDVPRRAAHAPAEAAHHPQGPQ|aEMRKQRE	.
TALL_VC088	ITFG1	PHKB	-/-	+/+	16:47365788	16:47497399	splice-site	splice-site	inversion	upstream	upstream	0	1	0	22	79	low	.	.	.	GAAACTTCTCTGTCAGTACTATATTGGAAAAACCTCAAAAaATGATGGTGGTTGGACAGTCAGCATTTGCAGACTTTG|GCTCAGTTTATGAACCTCTTAAAAGCATTAATCTTCCAAGACCTGAT...CAGAAGGCCAAGATCCAGGACAGCCTATACTGCGCTGCTGGGGCCTGGGCTTTGGCTCTTGCATACAG___GCGAATTGATGATGACAAGGGAAGGACCCATGAGCTGGAGCACTCAGCTATAAAATGC	in-frame	NFSVSTILEKPQkMMVVGQSAFADF|gSVYEPLKSINLPRP	.
TALL_VC088	MAEA	CTBP1	+/+	-/-	4:1322503	4:1238337	splice-site	splice-site	inversion	downstream	downstream	0	1	0	51	298	low	.	.	.	CTGGAGAGGCGTGAGACGGCCACCTGCCTGGCCTGGTGCCATGACAACAAGTCCCGGCTCCGGAAGATGAAG|GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCAT...GCCGGGACTGCACAGTGGAGATGCCCATCCTGAAGGACGTGGCCACTGTGGCCTTCTGCGACGCGCAGTCCACGCAGGAGATCCATGAGAAG___GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACC	out-of-frame	LERRETATCLAWCHDNKSRLRKMK|asdlrs*	.
TALL_VC088	CTBP1	MAEA	-/-	+/+	4:1248916	4:1332757	splice-site	splice-site	inversion	upstream	upstream	0	1	0	22	122	low	.	.	.	CGCGGCCGCTCGCGCCTCTCGATGGGCAGCTCGCACTTGCTCAACAAGGGCCTGCCGCTTG|ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGGACGAGGTGCGCCAGGCCATGG...GGCCTTCCCGCCCGACACGCACATCTCCCCGTACAAG___GACCTTCTGGACCCTGCACGGTGGCGGATGCTGATCCAGCAGTTCCGGTACGAtAACTACCGACTACACCAGCTGGGAAACAATTCTG	out-of-frame	MGSSHLLNKGLPL|dmqestsakqkgaswtrcarp	.
TALL_VC088	MAEA	CTBP1	+/+	-/-	4:1289982	4:1228343	splice-site	splice-site	inversion	downstream	downstream	0	1	0	67	262	low	.	.	.	CGGCGGCTCAGTTGTCCATGACCCTGAAGGTCCAGGAGTACCCGACCCTCAAG|GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG___GCATTGCCGTCTGCAACGTGC	in-frame	AAQLSMTLKVQEYPTLK|VLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNV	.
TALL_VC088	PTBP1	TMEM259	+/+	-/-	19:797505	19:1014473	splice-site	splice-site	inversion	downstream	downstream	0	1	0	262	1403	low	.	.	.	GCTATTCCGGCGCCTCCACTCCGTCCCCCGCGGGTCTGCTCTGTGTGCCATGGACGG|GCCCTGTTTGTGCTCTTCGTCCTGGCCTACATCCACATCGTCTTCTCCCGCTCGCCCATCAACTGCCTGGAGCAcGTGCGTGACAAGTGGCCGCGcGAGGGCATCCTGCGTGTGGAAGTGCGGCACAACTCGAGCCGCGCGCCC	out-of-frame	MDg|pclcssswptstsssparpstawstcvtsgrarascvwkcgttraar	.
TALL_VC088	PTBP1	TMEM259	+/+	-/-	19:805187	19:1014473	splice-site	splice-site	inversion	downstream	downstream	1	0	0	395	1403	low	.	.	.	AGAACAACCAGTTCCAGGCCCTGCTGCAGTATGCGGACCCCGTGAGCGCCCAGCACGCCAAGCTG___TCGCTGGACGGGCAGAACATCTACAACGCCTGCTGCACGCTGCGCATCGACTTTTCC...TCCGGGGACAGCCAGCCCTCGCTGGACCAGACCATGGCCGCGGCCTTCG|GCCCTGTTTGTGCTCTTCGTCCTGGCCTACATCCACATCGTCTTCTCCCGCTCGCCCATCAACTGCCTGGAGCAT	out-of-frame	SGDSQPSLDQTMAAAF|gpvcalrpglhphrllplahqlpga	.
TALL_VC088	GRIPAP1	UBB	-/-	+/+	X:49002186	17:16381904	splice-site	splice-site	translocation	upstream	upstream	0	1	0	78	9455	low	.	.	.	GAGGAACATGGCGCAAGCTCTGTCTGAGGAGGAGTTTCAGCGGATGCAGGT|CAAAATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAG___C	in-frame	MAQALSEEEFQRMQv|kMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLifagkq	.
TALL_VC090	snoU83B(1086),RP11-218E20.2(2324)	ABHD12B	./+	+/+	14:50845798	14:50877952	intergenic	splice-site	deletion/read-through	downstream	upstream	12	13	8	122	80	high	.	.	duplicates(3),low_entropy(2),mismappers(3),mismatches(1)	CCACAACGGACAAGTGGAATGGACAAGAAATAAACTTGATCATTGTTGCTGCTGAAATGTGTTGTTCTTGTTATCACAGATAAATGCAGTCTATATTGACTAGGAGACATCCTAAAATTTGTAGTACTAAAAACAATGAAGTGAAGGCAAGAGCTTGAGATGCAGGACCTTAACCCTGAGTTGCCAGGAAACTGATTGGGAGCAGTATATGTCAACGACTGAACAGATATTGGAAAGGACAGACTCATCTCTACCCACGCCATACACTTCCTGGTTAGTGAAATGAGCCTTGGAACA|ATATTTTCCACACTCCTGTTCAATGCTCGGAAGAAAAATTGCTGCTCTGTATGACAGCTTTACTAGTAAATCCTTAAAAGAACACGTTTTCCTTCCTCTGATAGACATGCTAATTTATTTTAATTTTT___TCAAAGCCCCATTTCTTGTGGATTTAAAGAAACCAGAGTTAAAGATTCCTCACACAGTGAACTTCTACCTGAGAGTTGAACCcGGG...GCTGGTATGAAGCAGCCCTTCGTGATGGGAACCCAATTATTGTTTATCTTCATGGCAGTGCAGAACACAG___GGCAGCTTCGCACAGACTGAAGCTGGTAAAG___GTGCTGAGTGATGGTGGCTTTCAT	.	.	.
TALL_VC090	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	4	9	1	39	28	high	.	.	mismatches(5)	TCTTAACCCCCCAATTTCATCACCCTCcCCTCCCCCCTTTATTTTTCTCTCGCTCCTCTTCCCCGCCTGCTTCCCTCCGCCGCGCTCCCCCCTCCTTTTTTTTtTTTGCATCcCAcGTCCAAA...CGGCGgAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GCCG...___...GTT...___...TTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATC	.	.	.
TALL_VC090	KMT2A	TNRC18	+/+	-/-	11:118482092	7:5362825	splice-site	splice-site	translocation	downstream	downstream	4	7	3	172	172	high	.	.	mismatches(1)	GTGGACTCTAGTCAGAAACCTACCCCATCAGCAAGAGAGGATCCTGCCCCAAAGAAAAGCAGTAGTGAGCCTCCTCCACGAAAGCCCGTCGAGGAAAAGAGTGAAGAAGGGAATGTCTCGGCCCCTGGGCCTGAATCCAAACAGGCCACCACTCCAGCTTCCAGGAAGTCAAGCAAGCAGGTCTCCCAGCCAGCACTGGTCATCCCGCCTCAGCCACCTACTACAGGACCGCCAAGAAAAGAAGTTCCCAAAACCACTCCTAGTGAGCCCAAGAAAAAGCAGCCTCCACCACCAGAATCAG|GTGCGGAGCGGGCCCTGGTGGCGCGGCCCTCCCTGGAGAGTCTGCTGGCAGCTGGCAGCCACATGCTGAGGGAGGTGCTGGATGGGCCCGTGGTGGACCCACTCAAGAACCTGCGGCTCCCGCGGGAGCTGAAGCCCAACAAGAAGTACAGCTGGATGCGCAAGAAGGAGGAGCGG___ATGTATGCCATGAAGTCCTCCCTGGAGGACATGGACGCCCTGGAGCTGGACTTCCGGATGCGGCTGGCCGAGGTGCAGCGCCAGTACAAGGAG	in-frame	VDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPES|gAERALVARPSLESLLAAGSHMLREVLDGPVVDPLKNLRLPRELKPNKKYSWMRKKEERMYAMKSSLEDMDALELDFRMRLAEVQRQYK	.
TALL_VC090	TNRC18	KMT2A	-/-	+/+	7:5370375	11:118484183	splice-site	splice-site	translocation	upstream	upstream	4	0	1	171	151	high	.	.	.	CTCTGACCAGTTCCTGCCCAGTCTGGAGGACCCACTGGCTGGCATGAACGCCCTGGCGGCAGCTGCGGAGCTGCCCCAGGCCAGGCCTCTGCCCTCCCCGGGTGCTGCTGGAGCCCAGGCCTTGGAGAAGCTGGAAGCAGCCGAGAGCCTTGTCTTGGAGCAGAGCTTCCTGCATGGCATCACCCTGCTAAGTGAGATCGCAGAGCTGGAGCTGGAGAGGAGGAGCCAAGAGATGGGAG|GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTCT...CAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAGGTAAAGGTGTTCAGTGATCATAAAGTATATTGAGTGTCAAAGACTTTAAATAAAGAAAATGCTACTACCAAAGGTGTTGAAAGAGGAA	out-of-frame	SDQFLPSLEDPLAGMNALAAAAELPQARPLPSPGAAGAQALEKLEAAESLVLEQSFLHGITLLSEIAELELERRSQEMG|gkttsgq*	.
TALL_VC090	TNRC18	KMT2A	-/-	+/+	7:5370375	11:118482422	splice-site	splice-site	translocation	upstream	upstream	0	1	1	171	88	medium	.	.	.	CTGGAGAGGAGGAGCCAAGAGATGGGAG|GTCtAGAGCAGAGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG___GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGC	in-frame	LERRSQEMG|glEQSKQKKVAPRPSIPVKQKPKEKEKPPPVNKQENAGTLNIL	.
TALL_VC090	TNRC18	KMT2A	-/-	+/+	7:5374055	11:118484183	splice-site	splice-site	translocation	upstream	upstream	0	1	0	163	151	low	.	.	duplicates(1)	GTCGAGAAGAAAGACTTGGAGTTGGAGAAGGAAGCCCCCAGCCCCTTCCAGGCCCTGTTCTCAG|GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAGGTAAAGGTGTTCAGTGATCATAAAGTATATTGAGTGTCAAAG	out-of-frame	VEKKDLELEKEAPSPFQALFS|gkttsgq*	.
TALL_VC090	TNRC18	KMT2A	-/-	+/+	7:5374055	11:118482422	splice-site	splice-site	translocation	upstream	upstream	0	1	0	163	88	low	.	.	.	AAGACTTGGAGTTGGAGAAGGAAGCCCCCAGCCCCTTCCAGGCCCTGTTCTCAG|GTCCAGAGCAGAGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAA...CCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG___GAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAGGCTTAGG	in-frame	DLELEKEAPSPFQALFS|gPEQSKQKKVAPRPSIPVKQKPK	.
TALL_VC090	GTPBP6	ZNF573	-/+	-/-	X:305237	19:37740194	intron	splice-site	translocation/3'-3'	downstream	downstream	2	1	0	69	8	high	.	.	.	CGTTCATCCTGGAAAGAGCTTCCGGAATTTGCCGTAGGCTGAGTTGCTGATGATGACCCTCACGTCGGCCGCCCCGTCCTCAGGGATCACGTCCACCTCCTGAACTGTGGCCTCCTTATACAGCCAGCTGGGCACAGATGCGCGTTGTATGGAGACAAGCAGAACCC|ATTTGGATTTACAGTGTGAGATAATCAGCTACATAGAAGTACCCACTTATGAAACAGATATATCCTCTACACAACTTCAGAGCATATATAAGAGAGAGAAACTCTATGAATGTAAGAAATGTCAGA	.	.	.
TALL_VC090	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	16	49	4	142	87	medium	.	.	duplicates(2),mismappers(4),mismatches(2)	CCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTT...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGC	.	.	.
TALL_VC090	ITM2C	PTMA	+/+	+/+	2:230865145	2:231711348	splice-site	splice-site	deletion	downstream	upstream	4	2	1	289	10810	medium	.	.	low_entropy(1),mismatches(16)	GCTCGGAGCGGCGGAGGCAGAGACCGAGGCTGCACCGGCAGAGGCTGCGGGGCGGACGCGCGGGCCGGCGCAGCCATGGTGAAGATTAGCTTCCAGCCCGCCGTGGCTGGCATCAAGGGCGACAAGGCTGACAAGGCGTCGGCGTCGGCCCCTGCGCCGGCCTCGGCCACCGAGATCCTGCTGACGCCGGCTAGG|GACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCT___AATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGG...___...AGAA...___...TGG...___...GATG...___GTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAG___GATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAG...AAAAAgGaAAAgtTaAAcaaAAAAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCACTTCCCGTCTgAGAATCTAAACGTGGTCACCTTCGAGTAGAGAGGCCCGCCCGCCCACCGTGGGCAGTGCCACCCGC...TTTTTCTTAAAAGTACTTTAAAAAGGAAATTTGTTTGTATTTTTTATTTACATTTTATATTTTTGTACATATTGTTAGGGTCAGCCATTTTTAATGATCTCGGATGACCAAACCAGCCTTCGGAG	in-frame	MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR|DLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEE	.
TALL_VC090	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69087206	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	2	48	15	medium	.	.	.	CCGCAGCCACCTGCAGCCCCTTGCTGGGACCCCAGAGGCCACCTACCAGATGACTGTGGAGCTCCTGTTCAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACA...GTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGT-AATTATAACAAAACCCAATGGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCCCTGTCATCGAGGGAGTTTTTGTGCTGGTAAAGATGAT	out-of-frame	RSHLQPLAGTPEATYQMTVELLFs|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL_VC090	ZNF573	PLCXD1	-/-	+/+	19:37758476	X:284167	splice-site	splice-site	translocation	upstream	upstream	3	0	1	10	579	medium	.	.	.	GAAACCTGGTATCACTGG___GAGGACATTCCATTTCTAAACCAGTTGTGGTTGAcTTACTGGAGCGAGGAAAAGAGCCCTGGATGATTTTGAGGGAAGAAACACAGTTCACAG___...CTGGTCTCTAACTCCTGGGCTCAAGCAGTCCTCCTGCATTGGCTTCCCAAAGTGCTGAAAATACAG___ATGGAGTCTTGCTCTGTCGCACAGGCTGGAGTGCAGTGGCCCGATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCACAGCCTCCAAGTAGCTGGGATTACAG|GTTGCCCAGGGCTCACCTCTGATGGGcGGGCAGGTGAGCGCTTCCAACAGCTTCTCGAGGCTGCACTGC...ACGAGGACTGGATGTCGGCACTGTGTCCCCGGCTCTGGGATGTGCCCCTCCACCACCTCTCCATCCCAG___GGAGCCACGACACGATGACGTACTGCCTGAACAAGAAGTCCCCCATTTCGCACGAGG	out-of-frame	MESCSVAQAGVQWPDLSSLQPPPPRFKQFSCHSLQVAGIT|gcpgltsdgragerfqqlleaal	.
TALL_VC090	ZNF573	PLCXD1	-/-	+/+	19:37770005	X:284167	splice-site	splice-site	translocation	upstream	upstream	1	1	0	20	579	medium	.	.	.	CTGGGATTATAGGCGTGAGCCACCATGCCTAGCCAATAGTAGTATTATTATGTCCAGTTTATTTGCCAAATTGGAATAATGAGTTGAAGTCACATGGCCAAAGTCACAAG___GAGGACATTCCATTTC...GGAGCGAGGAAAAGAGCCCTGGATGATTTTGAGGGAAGAAACACAGTTCACAG|GTTGCCCAGGGCTCACCTCTGATGGGcGGGCAGGTGAGCGCTTCCAACAGCTTCTCGAGGCTGCACTGCAGAAATGCCAACGAGGACTGGATGTCGGCACTGTGTCCCCGGCTCTGGGATGTGCCCCTCCACCACCTCTCCATCCCAG___GGAGCCACGACACGATGACGT	out-of-frame	MILREETQFT|gcpgltsdgragerfqqlleaalqkcqrgldvgtvspalgcapppplhpreprhdd	.
TALL_VC090	RP11-218E20.2	ABHD12B	+/+	+/+	14:50848149	14:50877952	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	32	80	medium	.	.	mismappers(1)	CTGAAATGTGTTGTTCTTGTTATCACAGATAAATGCAGTCTATATTGACTAGGAGACATCCTAAAATTTGTAGTACTAAAAACAATGAAGTGAAGGCAAGAGCTTGAGATGCAGGACCTTAACCCT...GATATTTTAAAGGATAAAATGAGCAGCCAGATGAAGACTTACATGGGCAAAGTTCAGAAGCGTCCTGAGTGCAGGAGCTTCTATCCCTGTGGAGCTGGGGTGCGTTACCTTCTCG|ATATTTTCCACACTCCTGTTCAATGCTCGGAAGAAAAATTGCTGCTCTGTATGACAGCTTTACTAGTAAATCCTTAAAAGAACACGTTTTCCTTCCTCTGATAGACATGCTAATTTATTTTAATTTTT___TCAAAGCCCCAT	.	.	.
TALL_VC090	RP11-218E20.2	ABHD12B	+/+	+/+	14:50848149	14:50878745	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	32	102	low	.	.	.	GGCAAAGTTCAGAAGCGTCCTGAGTGCAGGAGCTTCTATCCCTGTGGAGCTGGGGTGCGTTACCTTCTCG|TCAAAGCCCCATTTCTTGTGGATTTAAAGAAACCAGAGTTAAAGATTCCTCACACAGTGAACTTCTACCTGAGAGTTGAACCTGGGGTGATGCTAGGGATCTG___GCACACAGTCCCCAGCTGCCGGGGGGAAGATGCCAAGGGGAAGGACTGTTGCTGGTATGAAGCAGCCCTTCG	.	.	.
TALL_VC090	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	1	0	388	24	medium	.	.	low_entropy(1)	GCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATC...CCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCC	.	.	.
TALL_VC090	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	4	0	140	410	low	.	.	.	GAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC090	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	28	410	low	.	.	read_through(8)	AGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAG...GAACTCTTTTCTCCCTCCACCACCCCCCATGCCAGGGCCAAGACTGGGACCAGGAAAGGTAAACCTTCTATGAAAGTTTTCCAGAAAATAGTTAATGTCGGGACATTTAACCTCTCTGTTAACTAA	out-of-frame	KTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC090	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	5	0	54	24	low	.	.	low_entropy(1)	GATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACC...CCCACCTACAAGCAGAGAAcTGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGgCACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTAC	.	.	.
TALL_VC090	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	69	353	low	.	.	.	ATCTGACcTTACATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGG...GCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGAC	.	.	.
TALL_VC090	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	5	0	41	11	low	.	.	.	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAG	.	.	.
TALL_VC090	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510675	7:22201482	exon	intron	deletion/read-through	upstream	downstream	0	0	5	1943	1	low	.	.	low_entropy(3),mismappers(1),mismatches(7)	AATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTT...AGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGAC...|...TTAATGAAAAC	.	.	.
TALL_VC090	CCND2(3406),C12orf5(12449)	C12orf5	./+	+/+	12:4308756	12:4331280	intergenic	splice-site	deletion/read-through	downstream	upstream	3	1	0	6	17	low	.	.	.	CAGGATTGTAACGACTCTTGGGAGATTTAAGTCCTGGCAACCACAGGCCCGCGAGGCCGCGAGGGCTGCAGCTGAGTGTGACTGGCCCaTTTCTCTACCCcCTGCCaACCCCACAACCGACTGAAC...GGCTTAGGGCTTACAGCTCTGCAGCCTAACCTGTGTCTGTTTTACCTCCCTGGCCAGGAAGGAGGagCCAGTAAGTCCCAAGTGGAGTCATCCTCCTCCAACCCTCTCCACCACAAACAGACCTGGAATACTTCTTTCAGTTTGTGGACCATAACCTCTCCTTCTCAGACGAAGAAAGACCGTACTGCCTCA|TGGAGAAACAAGATTTAACAAGGAGAAAATAATCCAAG___GACAAGGAGTAGATGAACCTCTTTCAGAAACTGGATTTAAA	.	.	.
TALL_VC090	ANKRD22(16276),PTCD2P2(8356)	ANKRD22	./-	-/-	10:88868094	10:88832026	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	10	97	low	.	.	duplicates(2),mismatches(2)	G___...GTTCTTCAGTTTTGGGACTCGGACTGGCTCTCCTTTCTCCTCTGCTTGCAGACATCCTGTTGTGGGAACTTGTGATCgT|CCCATCTGCCAAGCAGCCTATCAGAATGACTTTGGACAAGTGTGGCGGTGGGTGAAAGAAGACAGCAGCTATGCCAACGTTCAAGATGGCTTTAATGGAGACACGCCCCTGATCTGTGCTTGCAGGCGAGGGCATGTGAGAATCGTTTCCTTCCTTTTAAGAAGAAATGCTAATGTCAACCTCAAAAACCA	.	.	.
TALL_VC090	AC108004.3	RPH3AL	-/-	-/-	17:413129	17:327579	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	34	6	low	.	.	.	CGCAGACTTTCGTTGATCCGATTCGCAAGGTTCTCTATTTCGGCAAAGTCGGGGAGGCTGACGGTGGAGGAGTCAGAAGGGAGGTGCTTCTTTTCCACTTTGCTCTGTCTGTGCTCTGGTTTCGGGCCACGCTCTTTGCAAGGACTTAAGATGTCATGAAAGGAGGAAGAAAGCGGCTGGCTCTTCAGGCTCTGACTCTGATGTTTATCTGCTGAGTAGATGAGCAG|ATGTGACTCCCCACCCCCAGCCGGGTGCTCCGAGCCATGGCCGACACCATCTTCGGCAGCGGGAATGATCAGTGGGTTTGCCCCAATGACCGGCAGCTTGCCCTTCGAGCCAA___GCTGCAGACGGGCTGGTCCGTGCACACCTACCAGACGGAGAAGCAGAGGAGGAAGCAGCACCTCAGCCCGGCGGAGGTGGAGGCCATCCTGCAGGTCATCCAGAGGGCAGAGCGGCTCGAC	.	.	.
TALL_VC090	TPCN2	RP11-554A11.9	+/+	+/+	11:69085930	11:69159446	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	65	22	low	.	.	.	TGTGGCTCTTCCTGGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|GACTTGCTGTGCTCAGATCCTCCATTCAAGAGAGCTACAGACACGGGGGTGCTG___CAAGAAGTCTGGCATTTGGCATTCCCAG	out-of-frame	VALPGNSSLAPANGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|tccaqilhsrelqtrgcckksgiwhs	.
TALL_VC090	EEF1A1P13	TRIO	-/-	+/-	5:14652165	5:14503038	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	44	2	low	.	.	low_entropy(2),mismappers(1),mismatches(10)	CTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCCACACGGCTCAcATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGG...|...TCCTTGAAGTCT	.	.	.
TALL_VC090	EEF1A1P6	DNAH11	-/-	+/-	7:22510757	7:21764813	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	909	0	low	.	.	duplicates(1),mismappers(2),mismatches(4)	GCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTT...|...TAAAGTTTTGTGT	.	.	.
TALL_VC090	EEF2K	NPIPB5	+/+	+/+	16:22247974	16:22507055	intron	intron	deletion/read-through	downstream	upstream	0	0	3	8	62	low	.	.	low_entropy(1),mismatches(2)	GTTACGGAGA...|...AATTGCATTAGCAGTGATTTAATTTTTTTAGATGCTAAAACTTATGGGTGAAAGTGGATTAAATGTAGCCAAATGCAACATCAAAATCTTCAGGCACAAAAACCCATTAACTTTTTCATACTCTC	.	.	.
TALL_VC090	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	2	108	2	low	.	.	mismatches(2)	GAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGaTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGG	out-of-frame	EDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|eiksgipgrdpeppvqppegqsilwiprevtvas	.
TALL_VC090	EMC3	SRGAP3	-/-	-/-	3:9969267	3:9101408	exon	intron	deletion	upstream	downstream	0	0	3	23	1	low	.	.	mismatches(1)	AAATTGCATTAAAAAAACAATACTAAGAGCCTTTTCACAAAAAGGTTCTAGAATTTGCAAAATTTAGTATGATTTTTGTGGGACAAAATCTCACTGTGTTTCATGATAGAAACTAAAAGAGAAGGG...|...CAGGGCTCTGC	.	.	.
TALL_VC090	PCMTD1	ST18	-/.	-/.	8:51863514	8:52129331	intron	intron	deletion/read-through	downstream	upstream	0	0	2	7	12	low	.	.	mismappers(2),mismatches(4)	.	.	.	.
TALL_VC090	BCKDHB	COPS5	+/+	-/-	6:80343812	8:67045960	splice-site	splice-site	translocation	downstream	downstream	0	1	1	68	216	low	.	.	.	GGAAGTGTTATGATGCCCTTCGAAAAATGATCAACTATTGACCATATAG|AATGCAGACTATACCACTGGTCAGGTCTTTGATTTGTCTGAAAAGTTAGAGCAGTCAGAAGCCCAGCTGGGACGAGGGAGTTTCATGTTGGGTTTAGAAACGCATGACCGAAAATCAGAAGACAAACTTGCCAAAGCTACAAGAGACAG___CTGTAAAACTACCATAGAAGCTATCCATGGATTGATGTCTCAGGTTATTAAGGATAAACTGTTTAATCAAATTAACATCTCTTAAACAGTCTCTGAGAAGTACTT	out-of-frame	KCYDALRKMINY*pyr|mqtiplvrsliclks*	.
TALL_VC090	STK17B	GLS	-/-	+/+	2:196143560	2:190900564	splice-site	splice-site	inversion	upstream	upstream	0	1	1	527	275	low	.	.	.	TTTGGAATGTCTCGAAAAATAGGGCATGCGTGTGAACTTCGGGAAATCATGGGAACACCAGAATATTTAG|ATGTGTTCAGAGCAACATTGTTTTGTTGACACAAGCATTTAGAAGAAAGTTTGTG...TTGAAATATGCCATTGCTGTTAATGATCTTGGAACTGAATATGTGCATCGATATGTTGGAAAAGAGCCGAGTGGACTAAGATTCAACAAACTATTTTTGAATGAAGATGGTAAGAATTACATAAA	out-of-frame	FGMSRKIGHACELREIMGTPEYL|dvfratlfc*	.
TALL_VC090	CXXC5	ADCYAP1	+/+	+/+	5:139648845	18:907659	splice-site	splice-site	translocation	downstream	upstream	0	1	1	60	558	low	.	.	.	GCGGCTTGGACGACTCGGAGAGCCG|GCCAGAGGAAGAGGCaTACGGCGAGGACGGAAACCCGCTGCCAGACTTCGATGGCTCGGAGCCGCCGGGCGCAGGGAGCCCCGCCTCCGCGCCGCGCGCCGCCGCCGCCTGGTACCGCCCGGCCGGGAGAAG___AGATGTCGCCCACGGGATCCTTAACGAGGCCTACCGCAAAGTGCTGGACCAGCTGTCCGCC	.	.	.
TALL_VC090	CHST11	SNRK	+/+	+/+	12:104601991	3:43299754	splice-site	splice-site	translocation	downstream	upstream	0	1	1	314	102	low	.	.	.	CGGAGGAATCCCTTTGGTGTGGACATCTGCTGCCGGAAGGGGTCCCGAAGCCCCCTGCAGGAACTCTACAACCCAATCCAG|GAAAAAGAAGCAACTAACAAAACACTGTGATAATAAGGATTATTCAGTATGCAGTTTGCAGG___ATATCCATGACGACATTGAAAATGAATTTTTTGTATTCACCAGATATTCTTATATGAGAAGATCTATTTTAAAC	out-of-frame	RRNPFGVDICCRKGSRSPLQELYNPIQ|ekeatnktl*	.
TALL_VC090	USP36	PBX3	-/-	+/+	17:78802324	9:125748550	splice-site	splice-site	translocation	upstream	upstream	1	0	1	398	565	low	.	.	.	GCCAG___CAGCTGCTCTCCCATGGGTGATGGTGATCCAGAGGCCATGGAAGAGTCTCCAAGGAAAAAGAAAAA------AAGAAAGCAGGAGACACAGCGGGCAGTAGAAGAGGATGGGCATCTCAAATGCCC...GCTGTTGTCCCCGAGTCCAGCAGCTGCGCACCATCCGCGAATGGCTGGTGTCCTGGGGACCGCATGG|GAAACATGCCCTGAACTGTCACAGAATGAAACCAGCGCTCTTCAGCGTCCTGTGTGAGATCAAAGAGAAAACAGGTAAGACGCTGCGCCCCGCAGTGGGCCTGGAGACCCCCGAGGTGGGGGTCGGAGCTACTCCTTCGACTCTCCAGTTGAGAGCTGCTGCcTTTGGGCACCGCCATCTTTG	out-of-frame	AVVPESSSCAPSANGWCPGDRM|gnmp*	.
TALL_VC090	MOB1B	GRSF1	+/+	-/-	4:70902550	4:70836314	splice-site	splice-site	inversion	downstream	downstream	0	2	0	75	135	low	.	.	.	GCCGCTCCGAGGCCTCGCGACCGCCGAGCCTGCAGCCTGCCCCGCGGCCAACATGAGCTTCTTGTT|GAGTCCAAAACTACTTACCTGGAAGACCTTCCACCACCCCCTGAGTATGAATTGGCCCCGTCCAAGTTAGAAGAGGAAGTGGATGATGTCTTTCTCATTCGAGCTCAAGGACTGCCCTGGTCATGCACTATGGAAGATGTGCTTAACTTTTTTTCAG___ACTGCAGAATCCGCAACGGTGAGAATGGAATACATTTTCTC	out-of-frame	MSFLl|spklltwktfhhplsmnwprps*	.
TALL_VC090	MOB1B	GRSF1	+/+	-/-	4:70902550	4:70833273	splice-site	splice-site	inversion	downstream	downstream	0	1	0	75	274	low	.	.	.	CGCGACCGCtGAGCCTGCAGCCTGCCCCGCGGCCAACATGAGCTTCTTGTT|ACTGCAGAATCCGCAACGGTGAGAATGGAATACATTTTCTCCTAAACAGAGATGGGAAACGAAGGGGTGATGCCTTAATTGAAATGGAGTCAGAGCAGGATGTGCAGAAAGCCTTAGAGAAGCACCGCATGTACATGGGCCAGCGGTATGTGGAAG___TATATGAGATAAACAATGAAGATGTGGATGCCTTAATGAAGAG	out-of-frame	MSFLl|lqnpqr*	.
TALL_VC090	ANKRD17	SRP72	-/-	+/+	4:73258278	4:56483137	splice-site	splice-site	inversion	upstream	upstream	0	1	0	32	187	low	.	.	duplicates(1)	TAACAACAGCGAGGAAGAAGAGGACGACGACGACGAGGAAGAGGAGGTTTCTG|AGGACCAAAATGTCTTTGACTCCAAGAAGAAAGTGAAATTAACCAATGCGGAAGGAGTAGAGTTTAAGCTTTCCAAGAAACAACTACAAGCTATAGAATTTAACAAAGCTTTACTTGCTATGTACACAAACCAG___GCTGAACAATGCCGCAAAATATCTGCCAGTTTACAGTCCCAA	in-frame	NNSEEEEDDDDEEEEVS|eDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQCRKISASLQS	.
TALL_VC090	PUM2	AP4B1	-/-	-/-	2:20318537	1:113901885	splice-site	splice-site	translocation	upstream	downstream	0	1	0	34	284	low	.	.	.	GAGAGAGACTGCATGGGGAGCTTCTC|GATGCCTGGTGTGCAGGAGTATATACAACAGCCTATTCTCAATGGTCTGCGGGATAAGGCTTCATATGTCAGGAGAGTGGCAGTCCTTGGATGTGCCAAGATGCATAATCTTCATGGAGACTCTGAA___AATGTCAAAACTGGACCAATGGGGCCAGGCTGAAGTATTGAACTTTCTGCTACGCTACCAACCCCGCAGTGAG	in-frame	RETAWGAS|rCLVCRSIYNSLFSMVCGIRLHMSGEWQSLDVPRCIIFMETLKMSKLDQWGQAEVLNFLLRYQPRS	.
TALL_VC090	RIMS2	ZFPM2	+/+	+/+	8:104068610	8:105444278	splice-site	splice-site	deletion	downstream	upstream	1	0	0	49	13	low	.	.	.	AGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACGTTGGATAGAA___AAGTTAATGAAGAAACTGAGCATGTGGAAGAGCAGGGGGAAGAAAAGCAGGGAGAAGAGGTCAAGGCAG___G...TAACAAATACAAACAGGTAGCCGGATCAGATCCCAGACTGGAACAAGATTACCATTCGA|AGGTGATGATGAAGGAATCCAGGAGACAGCAGAATCAGATGGGGACACACAGTCAGAGAAACCGG	out-of-frame	NKYKQVAGSDPRLEQDYHS|kvmmkesrrqqnqmgthsqrn	.
TALL_VC090	CARM1	XBP1	+/+	-/-	19:10871922	22:28799153	splice-site	splice-site	translocation	downstream	downstream	1	0	0	91	657	low	.	.	.	GCGGCGCGGGGCCCTGCGCTACCGTGTCGGTGTTCCCCGGCGCCCGCCTCCTCACCATCGGCGACGCGAACGGCGAGATCCAGCGGCACGCGGAGCAGCAGGCGCTGCGCCTCGAGGTGCGCGCCGGCCCGGACTCGGCtGGCATCGCCCTCTACAGCC|GAAACTGAAAAACAGAGTAGCAGCTCAGACTGCC	out-of-frame	GAGPCATVSVFPGARLLTIGDANGEIQRHAEQQALRLEVRAGPDSAGIALYS|rn*	.
TALL_VC090	TBL1X	AKAP17A	+/+	+/+	X:9465447	X:1599192	splice-site	splice-site	duplication	downstream	upstream	0	1	0	5	441	low	.	.	.	GGAGGTTCGGAGCGCGGCCGGGCGCGCGGCGCCGCCACAAGTTGCGCTGCTCGCGACGAG|GAAACAAAAGGAGCTGGAAGAGCTGGAGCGAGAGAGGAAAAGAGAAGAGAAGCTTCGCAAGAGGGAGCAGAAGCAGAGGGACCGTGAGCTGCGCCGGAATCAGAAGAAGCTGGAGAAGCT	.	.	.
TALL_VC090	TBL1X	AKAP17A	+/+	+/+	X:9465447	X:1593444	splice-site	splice-site	duplication	downstream	upstream	0	1	0	5	222	low	.	.	.	CGGAGCGCGGCCGGGCGCGCGGCGCCGCCACAAGTTGCGCTGCTCGCGACGAG|GCCCAAGGTCCCGGAGGCTATGGCAGCaGCTACCATCGTGCACGACACGTCTGAGGCCGTGGAGCTCTGCCCTGCTTACGGCTTGTACCTGAAGCCCATCACCAAGATGACCATCAGCGTGGCACTCCCGCAGCTGAAG	.	.	.
TALL_VC090	SLC7A5	BANP	-/-	+/+	16:87851724	16:88076590	splice-site	splice-site	inversion	upstream	upstream	1	0	0	74	42	low	.	.	.	GCCGCCGCCAAGCTCCTGGCCCTGGCCCTGATCATCCTGCTGGGCTTCGTCCAGATCGGGAAGG|ACGGCCGAAGCCCTGCAGCCCACGCTACAGCCGGAGATGCAGCTCGAGCACGGGGCCATCC	out-of-frame	AAAKLLALALIILLGFVQIGK|dgrspaahatagdaarargh	.
TALL_VC090	BANP	SLC7A5	+/+	-/-	16:88018667	16:87851849	splice-site	splice-site	inversion	downstream	downstream	1	0	0	43	64	low	.	.	.	GCCATCATCCCCTCCGACATGCTGCACATCAGCACCAACTGCCGCACGGCCGAGAAGATGGCGCTaACGCTGCTGGACTACCTCTTCCACCGCGAGGTGCAGGCTGTGTCCAACCTCTCGGGGC...ACGGGAAGAAGCAGCTGGACCCGCTCACCATCTACGGCATCCGGT|TGCTGCTCACGGCCGTGAACTGCTACAGCGTGAAGGCCGCCACCCGGGTCCAGGATGCCTTTGCCGCCGCCAAGCTCCTGG	in-frame	GKKQLDPLTIYGIR|lLLTAVNCYSVKAATRVQDAFAAAKLL	.
TALL_VC090	WDR75	XRCC5	+/+	+/+	2:189441578	2:216190225	splice-site	splice-site	deletion	downstream	upstream	0	1	0	140	931	low	.	.	.	CGCGTGGTTCGTTGTGGCGGCAGCGAGTTGAACTTTAGGAGAGCTGTGTTCTCTGCAGATTCTAA|CGAGTAACCAGCTCATAAATCACATCGAACAGTTTTTGGATACTAATGAAACACCGTATTT...GAAGAAGCCATTAAG___TTTTCAGAAGAGCAGCGCTTTAACAACTTCCTGAAAGCCCTTCAAGAGAAAGTGGAAATTAAACAATTAAATCATTTCTGGGAAATTGTTGTCCAGG___ATGGAATTACTCTG	out-of-frame	RVVRCGGSELNFRRAVFSADSn|e*	.
TALL_VC090	H2AFV	WSB1	-/-	+/+	7:44847969	17:27301788	splice-site	splice-site	translocation	upstream	upstream	0	1	0	244	260	low	.	.	.	GCGGCCGAGCGGAGGCGGAGTCGGCGCCGAGAACATG|TGAGATcACGTACTATAGGTGAACTTTTAGCTCCTGCAGCTCCTTTTGACAAGAAATGTGGTCGTGAAAATTGGACTGTTGCTTTTGCTCCAGATGGTTCATACTTTGCTTGGTCACAA	out-of-frame	M|*	.
TALL_VC090	BOP1	MROH1	-/-	+/+	8:144276224	8:144179455	splice-site	splice-site	inversion	upstream	upstream	1	0	0	98	79	low	.	.	.	CGAGGGCCACAGTGGGATTAAAAAGACCACTGAGGAGCAGGTGCAG___GCCAGCACTCCTTGCCCGAGGACAGAGATGGCGAGCGCCCGGATTGGGGATGAGTATGCGGAGGACAGCTCTGATGAGGAG|CTGGCACACCCATACCGAGCAGCGGTCCTGAGGGCCATGGAGAGGGTCCTGAGCAGTCGCGCCAGTGAG	in-frame	EGHSGIKKTTEEQVQASTPCPRTEMASARIGDEYAEDSSDEE|LAHPYRAAVLRAMERVLSSRAS	.
TALL_VC090	BOP1	MROH1	-/-	+/+	8:144289095	8:144250212	splice-site	splice-site	inversion	upstream	upstream	0	1	0	90	125	low	.	.	.	AAGGCGACGAGGAGGGAGAGGACGGAGCCCTTGATGACGAGGGCCACAGTGGGATTAAAAAGACCACTGAGGAGCAGGTGCAG|GTGCCCGAGATCGTGAGCGTCCTGCGCTCCAAGCTTCAGGAGGCCCAGGGAGAGCACGTCCTGCCGGCCGCCCAGCACAGCGTGTACCTCCTGGCCACCCAGCACTGCGCAGCCG	in-frame	GDEEGEDGALDDEGHSGIKKTTEEQVQ|VPEIVSVLRSKLQEAQGEHVLPAAQHSVYLLATQHCAA	.
TALL_VC090	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1094248	splice-site	splice-site	inversion	downstream	downstream	0	1	0	428	127	low	.	.	.	CGTCCGCGTtCGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GAGATGGAAATCCAAGAGAAAACAGCCCATTCCTCAACAATGTCGAGGTGGAACAAG...AACATGGCACTTTTCGAG___GAGGAGATGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACGAGGAGAGCCG	out-of-frame	SAfASGRKGAEEAERRARDKQ|emeiqektahsstmsrwn	.
TALL_VC090	SLC12A7	NKD2	-/-	+/+	5:1093533	5:1033372	splice-site	splice-site	inversion	upstream	upstream	1	0	0	136	450	low	.	.	.	GAAGAACATGGCACTTTTCGAG___GAGGAGATGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACGAGGAGAGCCGGCGGCGGGAGGCCAAG|TGGCACTCCCCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGGGACAACTCCTCAGCGCAGATGACGG	out-of-frame	KNMALFEEEMDSNPMVSSLLNKLANYTNLSQGVVEHEEDEESRRREAK|whsplrklraastrdnssaqmt	.
TALL_VC090	UVSSA	MAEA	+/+	+/+	4:1355245	4:1339074	splice-site	splice-site	duplication	downstream	upstream	1	0	0	78	209	low	.	.	.	CCGGCCCCTGAGCTGTTCGCACCCCCGTTTCGCAGCGCTTCACCCGCGTCGGGACCCACGGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAGAAGTCTTCCACTTCTCACAAGC	in-frame	gp*avrtpvsqRFTRVGTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGERhR|SLLSIRQDDKVVCPRTKEVFHFSQ	.
TALL_VC091	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	24	54	4	205	116	high	.	.	duplicates(5),low_entropy(5),mismappers(2),mismatches(2)	CCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAG	.	.	.
TALL_VC091	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	8	9	2	40	63	high	.	.	duplicates(1),mismatches(4)	CTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGC	.	.	.
TALL_VC091	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	6	7	2	132	61	high	.	.	duplicates(2),low_entropy(2),mismappers(2),mismatches(2)	ATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAA...AACTCCCTTCAACCCTATTAGAAAATTAGCTATTAAGATTTTGGTACATTC___TTTATTCAATATGCTCATTATGTGCACGATTCTTACCAACTGTGTATTTATGACCATGAGTAACCCTCCAGACTG	.	.	.
TALL_VC091	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	9	3	0	34	61	high	.	.	low_entropy(3),mismappers(16),mismatches(4)	GTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___...CTG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTA	.	.	.
TALL_VC091	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	3	56	61	low	.	.	low_entropy(1),mismappers(3),mismatches(3)	AATTTTTCCAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTC	.	.	.
TALL_VC091	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	178	61	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	GCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAA	.	.	.
TALL_VC091	ELOVL5	AL158035.1(62849),WISP3(81456)	-/-	./+	6:53348817	6:111972616	splice-site	intergenic	inversion	upstream	upstream	0	8	1	568	28	high	.	.	.	CGCCATTGTGACGTCACGGTCAGCCCACGTTCTGATTGTAGATAGCCGGCGCCTTCCTCTTCCCATCGCGCGGGTCCTAGCCACCGGTGTCTCCTTCTACATCCGCCTCTGCGCCGGCTGCCACCCGCGCTCCCTCCGCCGCCGCCGCCTTGCTGCTGCTCAAAGCTGCTGCCGCCCCTTGGGCTAAAAG|CTCCAGCAACAACTGTTTCTTGTGACTTTCTGTGGGACTCTGAGGAATGTTGGGATGATAATCACAGGAACCAATGGCTGCCTCTGGAAAGCCCATAATTCTGCACATTCATGGAGCTTCACTCTGATTCCAAATCCAGAAAGACCACCATGTCACTTATGGAGACACTTGAAATCCTTTCCACATCTTCAtTCATCACGCCTGGGGTGAGA	.	.	.
TALL_VC091	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	13	0	217	448	medium	.	.	duplicates(1),low_entropy(1)	CAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTG...GCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC091	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	37	448	low	.	.	read_through(15)	CCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC091	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	8	8	0	37	26	medium	.	.	duplicates(1),mismappers(1),mismatches(2)	AAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAGcCC...AACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGgCTGAACACGGGACTATGAGGATGTGAAaGAAGAAGATCTCCTGGAATAGAGGAACTGAAATTGACAACGCAAAT	.	.	.
TALL_VC091	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	7	2	0	847	61	medium	.	.	low_entropy(1)	CCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCAC	.	.	.
TALL_VC091	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	18	0	140	32	low	.	.	duplicates(2),low_entropy(1)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGC	.	.	.
TALL_VC091	EEF1A1P6	DNAH11	-/-	+/-	7:22510586	7:21843627	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	9	1708	3	low	.	.	duplicates(1),low_entropy(2),mismatches(26)	TGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCC...|...ATGCCTGTAGTCCCgGgTACTCGGGAgGCTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAG	.	.	.
TALL_VC091	EEF1A1P5	VAV2	+/+	-/+	9:133020316	9:133780530	exon	intron	deletion/5'-5'	downstream	upstream	0	0	9	4649	3	low	.	.	duplicates(1),mismappers(1),mismatches(23)	GCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGtCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTG...|...ACCCACCAAGGAAAGCAG	.	.	.
TALL_VC091	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	6	1	0	87	26	low	.	.	duplicates(1),low_entropy(2),mismappers(5),mismatches(1)	GTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCC	out-of-frame	LENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC091	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	3	3	0	27	22	low	.	.	duplicates(1),low_entropy(3)	CGGCACACCAATACGTAACGGCGACCGTGCGCGGCTCTCTAGCACCACCCCCGCTCCCTGACTGGCGAGGTTTCTGACCAGTCAGCAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGA	.	.	.
TALL_VC091	KCNJ12	PDLIM1P2(4881),RP11-728E14.3(6193)	+/+	./+	17:21419513	17:21450320	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	6	0	17	22	low	.	.	.	CTCTGCCCTGATTATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|GGTGTATGAAGAAAGGGCTTCAGCAGAAACAGAGGCTGAAGCCTGCGTGCTGGGGGCCGAGAGGCCAGAGGAGAATGTGATGAGACATAGAATTGGTAGTGCAGGAAGTTGGAAGATCAAGTACCGTGATGTTGG	.	.	.
TALL_VC091	ANKRD36	RP11-734K23.9	+/+	+/+	2:97245640	2:97284690	CDS	splice-site	deletion/read-through	downstream	upstream	3	2	1	329	684	low	.	.	low_entropy(1)	GAGCAGGCAAAGACTGGAAACAGAAATGCAATCATACCATTGTAGACTGAATGCTGCTCGATGTGATCATGATCAAAGTCACTCATCAAAAAGAGACCAAGAGCTTGCTTTCCAGGGCACAGTAGATAAATGTCGTCACTTACAGGAAAATTTGAATTCTCATGTTCTGATTCTTTCTCTGCAACTTTCTAAAGCTGAGA|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTTGGAC	out-of-frame	SRQRLETEMQSYHCRLNAARCDHDQSHSSKRDQELAFQGTVDKCRHLQENLNSHVLILSLQLSKAE|ispqtlpkavlhysgrqt*	.
TALL_VC091	ANKRD36	RP11-734K23.9	+/+	+/+	2:97241479	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	360	684	low	.	.	.	AAAAATTCGAAAACTGAAAAATAAGGCTAGTGTACTACAAAAGAGAATATCTGAAAAAGAAGAAATAAAATCGCAGTTAAAGCATGAAATACTTGAATTGGAAAAAGAACTCTGTAGTTTGAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTC	out-of-frame	KIRKLKNKASVLQKRISEKEEIKSQLKHEILELEKELCSLs|fstdttqssaslqwqtdlki	.
TALL_VC091	ANKH	EEF1A1P13	-/-	-/-	5:14712406	5:14652671	intron	exon	deletion/read-through	upstream	downstream	0	0	6	25	53	low	.	.	low_entropy(1),mismappers(2),mismatches(6)	GCGCAAGGGCC...|...AGGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTAcTGTTCCTGTTGGCCGAGTGGAGACTGGTATTCT	.	.	.
TALL_VC091	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510753	7:22312597	exon	intron	deletion/read-through	upstream	downstream	0	0	6	336	3	low	.	.	duplicates(1),low_entropy(3),mismatches(16)	CAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCA...|...GAGCTCTTCCCA	.	.	.
TALL_VC091	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853419	18:48098126	exon	intron	deletion/read-through	downstream	upstream	0	0	5	47	1	low	.	.	mismatches(3)	...TGACgTTGACAATCGAGTAGTACTCCCaaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCAC|...CAAAAGAGTACAAT	.	.	.
TALL_VC091	NTNG2	EEF1A1P5	+/+	+/+	9:132243432	9:133019486	3'UTR	exon	deletion	downstream	upstream	0	0	5	6	4963	low	.	.	duplicates(2),low_entropy(4),mismappers(2),mismatches(11)	CTTGGGAGTGGTG...|...ATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCGGGCAAGTaCACCACTACTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCC	.	.	.
TALL_VC091	RP5-857K21.6	C1orf159	+/+	-/+	1:632475	1:1085718	exon	intron	deletion/5'-5'	downstream	upstream	0	0	5	61	1	low	.	.	low_entropy(2),mismatches(8)	TAAAaCTAACTaTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTAcCCCGATGCATACACCACATGAAAcATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTA...|...TCTCACACCGG	.	.	.
TALL_VC091	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	2	71	15	low	.	.	low_entropy(1),mismappers(2)	ATTGGGATCAACTTGTTTAGAGGCGTCATTGTGGCTCTTCCTGGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTG...___CACTTCTCCTTGCTGCTGCCACGTGAAGAAGGATGTGTTTGCTTCCCCTTCCCCATAACAGTAAGTTTCCTGACGCCTCTCCAGCCATGCAGAACTGTGAGTCAATGAAAC	out-of-frame	IGINLFRGVIVALPGNSSLAPANGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL_VC091	C6orf183	CCDC162P	+/+	+/+	6:109270176	6:109285976	exon	splice-site	deletion/read-through	downstream	upstream	1	3	0	5	3	low	.	.	.	CCAGATTCAGTCTTATGGCTGAGTAGCAAGCATCCCAGCTCATTcGGGAGTTTGATTCATATATTTACATGTTGAATAAGTGGTGATTTCAACCCTCAACTCACTTCTTTATGCAAGACATTCCT...GGAAAATATGCAGGTGACTCTTGCATGCCAAGCTGCTCAGAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGCACCCCTCAAGGGAGCTGTCCTGCTAATGTCAAG|GATGAAATTGGAAAAGTCAAGAGAGATGTTATGGTTGAATATTGTCAGAA___GTTTAACCACCGCATGTCTCACTATGCTCTTCGGGGTCAGATCATGGCATACTGCAATAGCCTGAGAGATCTTCTGGAAGATTTTCCTACCATCAGGGACACCTTTTTCATGGTAGGGCAACCACAAGAGAAGAAGGGGTTGAGAGACTCCAAGGAGGGCCTCAAGGCTGACCCCAG___AAGATTTCAGCCCCGGCCACGATGTTTGCT	.	.	.
TALL_VC091	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	48	15	low	.	.	.	GGCCTGGCTCACTCTCCCTGCCCCGCCCCACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGC...___TGTTTCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAG	.	.	.
TALL_VC091	GFRA4	ATRN	-/-	+/-	20:3663354	20:3647187	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	1	3	0	67	24	low	.	.	.	CAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|TTGAGACAGTCCCAAGAACAGTTTTCCACAGTGAACCTGAGTGTCATTCCTAGTTCTCTCACTGGCTCTACACTGGCCTCCTCCAGCAACCATCAGCTCATCCCTGGACCTGTAATTAAATCAAGTATTTCCTATGCAAAAGTAAAAGGTTAGATGCTGGAACACGG	out-of-frame	MVRCLGPALLLLLLL|vetvprtvfhsepechs*	.
TALL_VC091	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511987	7:23357276	exon	intron	deletion	downstream	upstream	0	0	4	98	4	low	.	.	low_entropy(1),mismappers(1),mismatches(10)	.	.	.	.
TALL_VC091	C9orf171	EEF1A1P5	+/.	+/.	9:132553901	9:133019733	intron	exon	deletion	downstream	upstream	0	0	4	1	6660	low	.	.	low_entropy(3),mismappers(1),mismatches(23)	.	.	.	.
TALL_VC091	GRIP2(13813),RHBDF1P1(16958)	GRIP2	./-	-/-	3:14555894	3:14525931	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	4	4	low	.	.	low_entropy(1)	CGCCCAGCCTGTGCCAGTTAGCGCAAGCAGCTCTGGAGCGGGCACAGGAGCGCCGGCTCCAGGCGTGGGAGGCTGGGGCAGGCTGCACAGGGCTCTGCCGGAGGGCAGGAGGGCACAATGCTGGCGGTGTCACTCAAGTGGCGGCTGGGCGTGGTGAGGCGGCGTCTCAAAGGTGCCG|ACGATGGGCCCTACTCCAAAGGAGGCAAGGACGCAGGAGGGGCCGACGTTTCCCTGGCGTGCCGCAGACAGAGCATTCCAG___AGGAGTTCCGAGGGATCACTGTGGTGGAGCTGATCAAGAAAGAAGGCAGCACGCTGGGCCTGACTATCTCAGGTGGCACCGACAAGGATGGAAAGCCCAGG	.	.	.
TALL_VC091	TMEM182	TMEM182(15973),AC007251.2(13473)	+/+	./+	2:102798000	2:102859866	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	18	4	low	.	.	.	GTTTAATGGGATTGTGGAAGAGAATGACTCCAATATTTGGAAGTTCTGGTACA___CCAATCAGCCACCGTCCAAGAACTGCACACATGCTTACCTGTCTCCGTACCCCTTCATGAGAGGCGAGCACA...TTTACCGTGGTTTCTGGGCAGTCCTGATGCTCCTGGGGGTAGTTGCTGTAGTCATCGCAAGCTTTTTGATCATCTGTGCAGCCCCCTTCGCCAGCCATTTTCTCTACAAAGCTGGGGGAGGCTCATATATTGCTGCAG|TTTCTGTGGGTCAAGAGTGTGGAAGTGGCTAAGCAGAATGAGTCCAGCTCAGAATCCCATGAGTCTGCTAATCAAGCTATTTTCTGGGGTTGCAATCATCTGAAGGCCCAGCTGGGGCTAAAGAACGCcaTTTGCAGCTCGCTTTTTGCCTGGCTCAGAAGATCCATTTCCAGACTCACTTACACTGGCAGGCCTCAGTTCCTTGCCATGTGAATCACTGGATGGGCTGCCTaGACCTCCT	out-of-frame	YRGFWAVLMLLGVVAVVIASFLIICAAPFASHFLYKAGGGSYIAA|vsvgqecgsg*	.
TALL_VC091	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	0	253	149	low	.	.	low_entropy(1)	GGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAG	.	.	.
TALL_VC091	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	1	82	170	low	.	.	.	TAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGCAAGAGAGAAAGTGAATACGCTGATATAAGAAGCAAG___AAACCTTCCTTCCTTCCAGtTGTGTGTCAGTAGAATTACAGAGTGTCCACGGAAACAGCTCATGCCCTAGTGTACAGTGGTGCAG	.	.	.
TALL_VC091	RP11-617F23.1	CTD-3065B20.3	-/.	-/.	15:90076522	15:90606344	exon	intron	deletion	downstream	upstream	3	0	0	114	17	low	.	.	duplicates(2),mismappers(5),mismatches(8)	.	.	.	.
TALL_VC091	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87037303	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	0	3	0	47	90	low	.	.	.	GGGAAAACTTGCTGCGGTTGCTCAAG|CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTGGACATTGTGAGGAACATCCAGCTCTGTGGACGTTGGGGGTAAGAGAGCAGGAATGCGAATGCTAAGAAGCCGAGTAATAGACATATCCATGGTGCCTAGTTTTGCAGCAGAAACACCAAGTAGCAGTCCAATGCTTGTCATTTCATGGCCCTAAGATAGAAAC	out-of-frame	GKLAAVAQ|anrtsavcl*	.
TALL_VC091	PPFIA1	SHANK2	+/+	-/+	11:70350038	11:70569224	CDS	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	33	0	low	.	.	mismappers(1),mismatches(1)	ATTTTTAATCCAGACCTCAGGTCCCCATCAGTCAGTAGTTTACTCATCCACCTCCCCTCCCAGTTCCACCCCATGCTATAGCGATTCTTCACAGCATGCTCA...|...CCATCCCGAG	.	.	.
TALL_VC091	FAM199X	IL1RAPL2	+/+	+/+	X:104195558	X:104635324	3'UTR	intron	deletion	downstream	upstream	0	0	3	123	3	low	.	.	low_entropy(1),mismatches(1)	CAGATTTCTAGAGAGAGCAGATTTCTAGAGAGATTAGCATTCATAGTAAGTGAAAATTGTCTAATTTTTTTAATCCATGCTATTACTGGGCAGTAGGTCTAATTTTTTTTGACAAAAAATAGATCT...|...GAaTTGCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGTATTTCCTGAATCTGAACGTTGGCCTGCCTTGCTAGATTGGGGAAGTTCTCCTGGATAATATCCTGCAGAGTGTTTTCCAACTTGG	.	.	.
TALL_VC091	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	1	2	0	14	14	low	.	.	.	AGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAAT...GCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCTCTCTTCTTATGGCTCTGGACACACTGCTGAACTCTGACAGTACAAAGGAAATG___GGTTTTACGTGCAAGATCCAGGCTCTGCGTGAT	out-of-frame	VGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqek	.
TALL_VC091	RPL6P27	L3MBTL4	-/-	-/-	18:6462537	18:6370150	exon	intron	deletion/read-through	upstream	downstream	0	0	3	318	1	low	.	.	low_entropy(4),mismappers(1),mismatches(7)	GGCAGGTATTCCCGATCTGCCATGTATTCCAGAAAGGCCATGTAcAAGAGGAAGTACTCAGCCGCTAAATCCAAGGTTGAAAAGAAAAAGAAGGAGAAGGTTCTcGCAaCTGTTACAAAACC...AAGAACGGCGGTACCCGGGTGGTTAAACTTCGCAAAATGCCTAGATAtTATCCTACTGAAGATGTGCCTCGAAAGCTGTTGAGCCACGGCAAAAAACCCTTCAGTCAGCACGTGAGAAAACTGCGAGCCAGCATTACCCCCGGGACCATTCTGATCATCCTCACTGGACGCCACAGG...|...TTTTTTTTTTTTTTTTTGAGACCGAGTC	.	.	.
TALL_VC091	POLR3E	NPIPB5	+/.	+/.	16:22317774	16:22495446	intron	intron	deletion/read-through	downstream	upstream	0	0	2	5	7	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL_VC091	ADAMTS6	CENPK	-/.	-/.	5:65345120	5:65520553	intron	intron	deletion/read-through	downstream	upstream	0	0	2	0	71	low	.	.	mismappers(2),mismatches(1)	.	.	.	.
TALL_VC091	OSBPL9	ZCCHC11	+/.	-/.	1:51692068	1:52411997	intron	intron	deletion/5'-5'	downstream	upstream	0	0	2	2	13	low	.	.	mismappers(1)	.	.	.	.
TALL_VC091	EDEM1	DGCR8	+/+	+/+	3:5208263	22:20108890	splice-site	splice-site	translocation	downstream	upstream	1	0	1	334	272	low	.	.	.	TGAACACCTGGATTGACTCTCTGCAGGCCTTTTTCCCTGGACTGCAG___GTGCTGATAGGAGATGTGGAAGATGCCATCTGCCTTCATGCCTTCTACTATGCCATATGGAAACGATATGGTGCCCTCCCTGAGAGATATAACTGGCAGCTGCAGGCCCCTGACGTTCTCTTCTACCCACTGAGACCAGAGTTAGTGGAATCCACATATCTCCTCTACCAG|GAGACATCGGACAAGAGTGTGATTGAGCTGCAGCAGTATGCCAAGAAGAACAAGCCCAACCTGCACATCCTCAGCAAGCTCCAAGAGGAGATGAAGAGGCTAGCTGAGGAAAGG___GAGGAGACTCGAAAGAAG	in-frame	NTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVLFYPLRPELVESTYLLYQ|ETSDKSVIELQQYAKKNKPNLHILSKLQEEMKRLAEEREETRK	.
TALL_VC091	TFCP2	CERS5	-/-	-/-	12:51172301	12:50144057	splice-site	splice-site	deletion	upstream	downstream	0	1	0	104	114	low	.	.	.	GGACTTTGATGCTAGCCTGTCCGGGATCGGCCAGGAACTGGGTGCTGGTGCCTATAGCATGAG|ATTTATTGCCAAACCCTGTGCACTCcGTATTGGCATCGAGGACAGTGGTCCTTATCAGGCCCAACCCAATGCCATCCTTGAAAAGGTGTTCATATCTATTACCAAG___TATCCTGATAAGAAAAGGCTGGAGGGCCTGTCAAAG	in-frame	DFDASLSGIGQELGAGAYSMr|FIAKPCALrIGIEDSGPYQAQPNAILEKVFISITKYPDKKRLEGLS	.
TALL_VC091	NFYB	AKAP9	-/-	+/+	12:104131754	7:92093097	splice-site	splice-site	translocation	upstream	upstream	0	1	0	56	138	low	.	.	.	GTCCTGCAAGCTGAGGACAGAGACCTTGTCTGTTGTTGACAGCTACGTGACCAGCACATAGCATGAACCTG|AACTCTTGGAATATAATATACAGCAGAAGCAGTCTCAAATGCTGGAGATGCAAGTGGAGCTCAGCAGTATGAAAGACAGAGCAACGGAACTGCAGGAGCAGCTGAGTTCTGAGAAAATGGTGGTTGCTGAACTGAAGAGTGAGCTTGCACAAACTAAATTGGA	out-of-frame	MNL|nswniiysrsslkcwrckwssav*	.
TALL_VC091	FNIP1	NDFIP1	-/-	+/+	5:131796830	5:142151731	splice-site	splice-site	inversion	upstream	upstream	1	0	0	54	422	low	.	.	.	CGGAGCGACCCCTGCCTGGCCGTGGCTAGCATGGCCCCTACGCTGTTCCAGAAGCTCTTCAGCAAGAGGACCGGGCTGGGCGCGCCCGGCCGCGACGCCCGGGACCCAGATTGCGGGTTCAG|ATGTTTTCTGGCAAAGGCCTTCCTGCATTTATGAATTCTCTCTCAAGAAGCAAGAGAACACCTGCAGGAAGTGAATCAAGATGCAGAACACAGAGG	out-of-frame	MAPTLFQKLFSKRTGLGAPGRDARDPDCGFr|cflakaflhl*	.
TALL_VC091	ARL15	NREP	-/-	-/-	5:54310432	5:111735507	splice-site	splice-site	duplication	upstream	downstream	1	0	0	6	765	low	.	.	.	GAGCTGCTCGCTCGCAGCCAGAaACGCTGCTTTTTTTTTCCGGGTTCGGAGCCGTTCCGGATGCTTTAGGCTGCCGGATGTCTGATCTCCGgATAACTGAGGCGTTTCTGTACATGGATTATCTG|GTTTATTACCCAGAACTCTTTGTC	in-frame	MSDLRITEAFLYMDYL|VYYPELF	.
TALL_VC091	ADAMTS2	FOXN3	-/-	-/-	5:179272911	14:89412490	splice-site	splice-site	translocation	upstream	downstream	1	0	0	8	93	low	.	.	.	GGCTG___GCTGGTCTGATCCGGATGGAGGAGGAGGAGTTCTTCATCGAACCCTTGGAGAAGGGGCTGGCGGCGCAGGAGGCTGAGCAAGGCCGTGTGCATGTGGTGTATCGCCGGCCACCCACGTCCCCTCCTCTCGGGGGGCCACAGGCCCTGGACACAG|GAGCCTTCACGTAAATGGGTCCAGTCATGCCTCCCAGTAAGAAGCCAGAAAGCTC	out-of-frame	LAGLIRMEEEEFFIEPLEKGLAAQEAEQGRVHVVYRRPPTSPPLGGPQALDT|gaft*	.
TALL_VC091	STAU2	TCEB1	-/-	-/-	8:73738284	8:73946820	splice-site	splice-site	duplication	upstream	downstream	0	1	0	197	744	low	.	.	.	GTTTTTGGAGCCGTGAGGGATACAGCAGTTTGGTCAATATTGTCTTAACATGCTTCAAATAAATCAG|GTCAGTTTGCTGAGAACGAAACCAATGAGGTCAATTTTAGAGAGATACCTTCACATGTGCTATCGAAAGTATGCATGTATTTTACGTACAAGGTTCGCTACACTAACAGCTCCACCGAGATTCCTGAATTCCCAATTGCACCTGAAATTGCAC	out-of-frame	MLQINQ|vsllrtkpmrsilerylhmcyrkyacilrtrfatltapprflnsqlhlkl	.
TALL_VC091	CTC-432M15.3	NDFIP1	-/-	+/+	5:131796830	5:142151731	splice-site	splice-site	inversion	upstream	upstream	1	0	0	54	422	low	.	.	.	CGGAGCGACCCCTGCCTGGCCGTGGCTAGCATGGCCCCTACGCTGTTCCAGAAGCTCTTCAGCAAGAGGACCGGGCTGGGCGCGCCCGGCCGCGACGCCCGGGACCCAGATTGCGGGTTCAG|ATGTTTTCTGGCAAAGGCCTTCCTGCATTTATGAATTCTCTCTCAAGAAGCAAGAGAACACCTGCAGGAAGTGAATCAAGATGCAGAACACAGAGG	out-of-frame	MAPTLFQKLFSKRTGLGAPGRDARDPDCGFr|cflakaflhl*	.
TALL_VC091	THEMIS	PTPRK	-/-	-/-	6:127807216	6:128219096	splice-site	splice-site	duplication	upstream	downstream	1	0	0	29	17	low	.	.	.	CCTCGCCCTCCGAAACACCCCTCAGTAGAGGAAACAAAGTTAACCCTGCTAACCTTAGCAGAAGAAAGGACGGTAGACCTGCCCAAGTCTCCCAAG___GCTGGAGTGCAATGGCGTGATCTTGG...GCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCTGCCTCAGCCgCCCACGTAGCTGGGATTACAGGCACCCCCCACCACGTCCAG|AGACGAAATGGAGAAGATATACCAGTAGCCCAGACTAAG	in-frame	QPLPPGFKQFSASAaHVAGITGTPHHVQ|RRNGEDIPVAQT	.
TALL_VC091	NOC4L	ULK1	+/+	+/+	12:132145665	12:131908898	splice-site	splice-site	duplication	downstream	upstream	0	1	0	90	197	low	.	.	.	GGGAGCCACACGGAAGTACAAGGTGTGGATGAGACACCGCTATCACAGCTGCTGCAATCGCTTGGGAGAGCTCCTGGGCCACCCCTCCTTTCAGGTCAAG|CTGACTTCGGCTTCGCGCGGTACCTCCAGAGCAACATGATGGCGGCCACACTCTGCGGCTCCCCCATGTACATG___GCCCCCGAGGTCATCATGTCCCAGCACTACGACGGGAAGGCGGACCTGTGGAGCATCGGCA	out-of-frame	GATRKYKVWMRHRYHSCCNRLGELLGHPSFQVK|ltsasrgtsrat*	.
TALL_VC091	RP11-463D19.2	TCEB1	-/-	-/-	8:73738284	8:73946820	splice-site	splice-site	duplication	upstream	downstream	0	1	0	197	744	low	.	.	.	GTTTTTGGAGCCGTGAGGGATACAGCAGTTTGGTCAATATTGTCTTAACATGCTTCAAATAAATCAG|GTCAGTTTGCTGAGAACGAAACCAATGAGGTCAATTTTAGAGAGATACCTTCACATGTGCTATCGAAAGTATGCATGTATTTTACGTACAAGGTTCGCTACACTAACAGCTCCACCGAGATTCCTGAATTCCCAATTGCACCTGAAATTGCAC	.	.	.
TALL_VC091	OTUD4	KIAA0922	-/-	+/+	4:145139951	4:153550073	splice-site	splice-site	inversion	upstream	upstream	1	0	0	97	194	low	.	.	.	CAGACTTTGACCACTGGACCTGATTCAGCTGTATCCCAAGCTCATTTAACACCCTCTCCAGTTCCTGTGTCAATACAGGCAGTTAACCAGCCCTTGATGCCTTTGCCTCAGACATTGAGCCTTTAT...GAGATCGAGCCATTGTACCACCTTATTCACTGTGTCAGACTGGGGAGGACCTACCTAAAG___ATAAGAATATTCTTCGATTCTTCTTCAATCTTGGTGTGAAG|CTTCTCGcACAAACTATTTAGTGGA	out-of-frame	DRAIVPPYSLCQTGEDLPKDKNILRFFFNLGVK|llaqti*	.
TALL_VC091	WDR59	ZNRF1	-/-	+/+	16:74885653	16:75093572	splice-site	splice-site	inversion	upstream	upstream	1	0	0	249	453	low	.	.	.	AAATAAAAG___GCTCCTGGACCCCGCCAATACCCAGCAATTTGATGACTTTAAGAAATGCTATGGGGAAATCCTCTACCGTTGGGGTCTGAGAGAGAAGCGAGCTGAAGTGTTGAAGTTTGTCTCCTGTCCTCCTGACCCTCACAAAGGGATCG|GTTTCAAGTGCCCCATTTGCTCCAAGTCTGTGGCTTCTG	in-frame	NKRLLDPANTQQFDDFKKCYGEILYRWGLREKRAEVLKFVSCPPDPHKGI|gFKCPICSKSVAS	.
TALL_VC091	ADAMTS2	RP11-33N16.3	-/-	-/-	5:179272911	14:89412490	splice-site	splice-site	translocation	upstream	downstream	1	0	0	8	93	low	.	.	.	GGCTG___GCTGGTCTGATCCGGATGGAGGAGGAGGAGTTCTTCATCGAACCCTTGGAGAAGGGGCTGGCGGCGCAGGAGGCTGAGCAAGGCCGTGTGCATGTGGTGTATCGCCGGCCACCCACGTCCCCTCCTCTCGGGGGGCCACAGGCCCTGGACACAG|GAGCCTTCACGTAAATGGGTCCAGTCATGCCTCCCAGTAAGAAGCCAGAAAGCTC	out-of-frame	LAGLIRMEEEEFFIEPLEKGLAAQEAEQGRVHVVYRRPPTSPPLGGPQALDT|gaft*	.
TALL_VC092	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	27	67	3	237	133	high	.	.	duplicates(7),low_entropy(2),mismappers(2),mismatches(3)	CACGCCTGTAATCCCAGCTACTCCGGAGACTGAGACAGAAGAATCGCTTGAACCCACGATGTGGCGGTTGCAGTGGGCCGAGATCATGCCACTGCACTCCAGCCTGGGTGgCAGAGAAAGACTCTG...CCAGAATTGGTGGGTCTCACTGACTTCAAtAATGAAGCCGCGGACCCTCCTG___GCGGAATTCTCCACGAGTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG___GCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCAC...ATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAG	.	.	.
TALL_VC092	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	14	10	1	64	44	high	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(1)	CCgCTCCTTTTTTTTATTTGCATCTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...TCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCG	.	.	.
TALL_VC092	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	10	10	4	130	132	high	.	.	duplicates(1)	.	.	.	.
TALL_VC092	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	18	0	102	39	high	.	.	duplicates(1),mismatches(2)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTA	.	.	.
TALL_VC092	PAN3	Y_RNA(8712),CASC10(2129)	+/+	./-	13:28267401	10:21490529	splice-site	intergenic	translocation	downstream	downstream	11	4	2	276	55	high	.	.	duplicates(1),mismappers(1)	AAACAGCAAAGATGATCTGCCATATTGCCTTCGGAGGATACATG___GTTTTCGTCTTGTTAACACAAAGTGCATGGTGTTGGTCGACATGTGGAAGAAAATTCAACACTCAAATATCGTAACTTTGCGTGAAGTATTTACCACTAAAGCATTTGCTGAGCCCT___CTCTTGTGTTTGCATATGATTTCCATGCTGGAGGAGAAACTATGATGAGCAGACACTTTAATGACCCTAATGCTGATGCCTACTTCACCAAGAGAAAGTGGG|ATTTATAGTGCTCTTGGGGAGGCTCCTGGAAGAAGTGATATATCAGACAGACATACTATTCAAAAGCTTAAAACTTAGCATCTGACTAT___AAACACCATGCCACAAAGAAGCTTGGGATGAAGGATCACGAGGCGAGAGGAGTCCAGCACCCAGCACACCCACTGGGAGCTACATGCATGAGACCCCACCCAATCAGCAGAACCATACAGCCAACAGAATCATGAGAAATAAGAAGTTGTTGTTGTTCcAA...GCCCAGACTGAAGTGCAGTGGCAAGATCTCAGCTCACCACAACATCTGCCTCCCAGGCTCAAGTGATTCTCCTGCCTCAGCCCCTTGAGTAGCTGGGATTACAGCGTGCACCACTACCACCTGG	out-of-frame	NSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAFAEPSLVFAYDFHAGGETMMSRHFNDPNADAYFTKRKW|dl*	.
TALL_VC092	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	6	4	0	237	42	high	.	.	duplicates(2),low_entropy(1),mismappers(5)	GTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGA...GTCAAATCTGTCCAG___...ATATTTGTTACACATTAGGGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCA	out-of-frame	icytlGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC092	PICALM	MLLT10	-/-	+/+	11:85981129	10:21557621	splice-site	splice-site	translocation	upstream	upstream	0	3	3	137	15	high	.	.	.	CTTGGATTCATCTTTAGCCAACCTTGTGGGCA___ATCTTGGCATCGGAAATGGAACCACTAAGAA___TGATGTAAATTGGAGTCAACCAGGTGAAAAGAAGTTAACTGGGGGATCTAACTGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCgGCAACAATG|ACTCTACTTCATGAGGCTGGAACCATGACTGCTGGCAGCTCTTGTTTCCAGCCCCTTTTACCAGAAGAAGGGGCTCTCTAGAAGAATCCTGGAAAGGACTCTGATTGGCCTGTCTTGGATCATGTGCCCATCATCTCTGTGGCTGGAGTGGGGAGGGTACTGTGAATGGCAACCCTCACTAGAACTACATAGTTGGAGTCAGGG___AGATGTGAACTTTGTCCCCATAAGGATGGAGCTTTAAAAAG	out-of-frame	LDSSLANLVGNLGIGNGTTKNDVNWSQPGEKKLTGGSNWQPKVAPTTAWNAATM|tllheagtmtagsscfqpllpeegal*	.
TALL_VC092	PICALM	MLLT10	-/-	+/+	11:85981129	10:21586294	splice-site	splice-site	translocation	upstream	upstream	3	2	1	137	56	high	.	.	.	GAAAAGGCAAAGACCTCCTTTAGAAAACCATAGCGTCATAAAGTTCCTTACAAATTCTATTTCGTCTGTTTGTAACTTTAAGGCTTTGATGAACTAGGTGGACTTCTCAAACCAACAGTGGCCTCTCAGAACCAGAACCTTCCTGTTGCCAAACTCCCACCTAGCAAGTTAGTATCTGATGACTTGGATTCATCTTTAGCCAACCTTGTGGGCA___ATCTTGGCATCGGAAATGGAACCACTAAGAA___TGATGTAAATTGGAGTCAACCAGGTGAAAAGAAGTTAACTGGGGGATCTAACTGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCgGCAACAATG|AGATGTGAACTTTGTCCCCATAAGGATGGAGCTTTAAAAAGAACAGATAATGGGGGT...___GTTGGGCCCATGTGGTTTGTGCCCTGTATATTCCAGAGGTACAATTTGCCAATGTTTCCACAATGGAACCAATTGTTTTACAGTCTGTTCCGCATGATCGTTATAATAAG	in-frame	ekaktsfrkp*rhkvpykfyfvcl*l*GFDELGGLLKPTVASQNQNLPVAKLPPSKLVSDDLDSSLANLVGNLGIGNGTTKNDVNWSQPGEKKLTGGSNWQPKVAPTTAWNAATM|RCELCPHKDGALKRTDNG	.
TALL_VC092	PICALM	MLLT10	-/-	+/+	11:85981129	10:21551816	splice-site	splice-site	translocation	upstream	upstream	0	0	3	137	9	medium	.	.	mismappers(1)	CTTGGATTCATCTTTAGCCAACCTTGTGGGCA___ATCTTGGCATCGGAAATGGAACCACTAAGAA___TGATGTAAATTGGAGTCAACCAGGTGAAAAGAAGTTAACTGGGGGATCTAACTGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCgGCAACAATG|GCAGAGTCTCGCTCTGTTGCCCAGGCTAAAGTGCAGTGGTGTGATCTCAGCCCACTGCAACCTCTGCTCCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAA___AGATGTGAACTTTG	in-frame	LDSSLANLVGNLGIGNGTTKNDVNWSQPGEKKLTGGSNWQPKVAPTTAWNAATM|AESRSVAQAKVQWCDLSPLQPLLPGFKRFSCLSLPkm*	.
TALL_VC092	PICALM	MLLT10	-/-	+/+	11:85981129	10:21595331	splice-site	splice-site	translocation	upstream	upstream	1	0	0	137	70	low	.	.	.	CGGAAATGGAACCACTAAGAA___TGATGTAAATTGGAGTCAACCAGGTGAAAAGAAGTTAACTGGGGGATCTAACTGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCgGCAACAATG|GTTGGGCCCATGTGGTTTGTG	out-of-frame	GNGTTKNDVNWSQPGEKKLTGGSNWQPKVAPTTAWNAATM|vgpmwf	.
TALL_VC092	PICALM	MLLT10	-/-	+/+	11:85996826	10:21651673	splice-site	splice-site	translocation	upstream	upstream	0	1	0	71	98	low	.	.	.	CCCATCTGTACATCCTATGTCAACTGCTTCTCAGGTAGCAAGTACATGGGGAG|AAATATAAAGAGAAGGACAAACACAAACAGAAACACAAGAAGCAGCCAGAACCATCACCTGCATTGGTTCCATCCTTGACTGTTACTACAGAAAAA___ACTTATACAAGCACTAGCAACAACTCTATAT	out-of-frame	PSVHPMSTASQVASTWG|ei*	.
TALL_VC092	PICALM	MLLT10	-/-	+/+	11:85996826	10:21586294	splice-site	splice-site	translocation	upstream	upstream	0	1	0	71	56	low	.	.	.	CTTGATTTGCAGCAGCCAACTTTTCACCCATCTGTACATCCTATGTCAACTGCTTCTCAGGTAGCAAGTACATGGGGAG|AGATGTGAACTTTGTCCCCATAAGGATGGAGCTTTAAAAAGAAC...GTATATTCCAGAGGTACAATTTGCCAATGTTTCCACAATGGAACCAATTGTTTTACAGTCTGTTCCGCATGATCGTTATAATAAG___ACTTGCTACATTTGTGATGAACAAGGAAGAGAAAGCAAAG	out-of-frame	LDLQQPTFHPSVHPMSTASQVASTWG|em*	.
TALL_VC092	SPNS3	RP13-580F15.2	+/.	-/.	17:4482892	17:4483872	intron	intron	duplication/3'-3'	upstream	downstream	10	10	4	130	132	medium	.	.	duplicates(1)	.	.	.	.
TALL_VC092	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	6	6	3	32	22	medium	.	.	low_entropy(1),mismappers(2),mismatches(1)	GCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTA?TCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAACACGGGACgATGAGGATGTGAAgGAAGAAGATCTCCTGG	.	.	.
TALL_VC092	IPPKP1(10925),FAS-AS1(10975)	SAP18	./+	+/+	13:21115296	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	8	6	1	106	1249	medium	.	.	duplicates(3),low_entropy(1),mismatches(1)	AAATGGTCATCTCCCAACAGCCTCTCTGGACCtCTGCCTGCAAGCCCGGCCCACgCAgCTTGGACCCAGGCTGGAGACACAGACAGCCAGGTGgTGATGCCCACGCGCAGCTaCAAGACCCCGGGGAGCCTCCGCCAGGCCGGAACCTGCGCCAGGCTTCTCTGGAACCTTCTCTCCAGGACGCTCTTCTGCGGTTACTGAAAAAGGGAGTCTACATGAATTAATAAGTGAAG___GAGGCAACAAGAAATCAACAT?CTGTTAGCCAGGAAGAAGGCCCTCACCAAGAACTCCAGCCATGCTGACATCCTGATCTCTGACTTTCAGGTTCCAGACCT|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTTGCAGATCTACACTTG___GATGGATGCAACtTTGAAAGAACTGACAAGCTTAGTAAAAGAAGTCTACCCAGAAGCTAGAAAGAAGGGCACTCACTTCAATTTTGCAATCGTTTTTACAGATGTTAAAAGACCTGGCTATCG___AGTTAAGtAGATTGGCAGCACCATGTCTGGCAGAAAGGGGACTGATGATTCCATGACCCTGCAGTCGCAGAAGTTCCAGATAGGAGATTACTTGGACATAGC	.	.	.
TALL_VC092	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	9	2	0	647	85	medium	.	.	duplicates(1),low_entropy(4),mismatches(1)	GCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATC...GAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAaCC	.	.	.
TALL_VC092	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	2	3	0	53	50	medium	.	.	low_entropy(1),mismatches(1)	CAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAGGC	.	.	.
TALL_VC092	P2RY8	DHRSX	-/.	-/.	X:1512919	X:2346717	intron	intron	deletion	downstream	upstream	1	0	1	13	9	medium	.	.	low_entropy(1),mismappers(3),mismatches(5)	.	.	.	.
TALL_VC092	EEF1A1P6	DNAH11	-/-	+/-	7:22510656	7:21867743	exon	intron	deletion/5'-5'	upstream	downstream	0	0	8	2701	4	low	.	.	low_entropy(2),mismatches(18)	TATGC___CCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTG...|...TGGGATGTCTT	.	.	.
TALL_VC092	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510564	7:22352911	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	7	2058	1	low	.	.	low_entropy(3),mismatches(20)	CGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGA...|...AGATCGTTG	.	.	.
TALL_VC092	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	4	2	0	96	11	low	.	.	duplicates(1),mismappers(1)	TCTCAAACAGATG___TTGTAGAAATAAGAAGAAGCAACTGTACAAACCAT___GTATCTACTGAGCGTTTCAGTCAACAATACAGCTCGTGTTCGACAATATTCCTTGATGACAGCACAGCCATCCAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACCTGCTACCACGGCCCTTCCCCAGTCTCAATAAAAAGC	.	.	.
TALL_VC092	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47997739	splice-site	splice-site	deletion/read-through	upstream	downstream	2	1	0	96	6	low	.	.	.	CTTGATGACAGCACAGCCATCCAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|TTCATGCCGTGGAGGAAGTGGTGAAGGAGGTGGTGGGACATGCCAAGGAGACTGGAGAGAAAG___C...AAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTtCACCTGCTACCACGGCCCTTCCCCAGTCTCAATAAAAA	.	.	.
TALL_VC092	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	207	285	low	.	.	low_entropy(1)	GAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC092	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	23	285	low	.	.	duplicates(1),read_through(7)	TCGCGGGTGGTTCCGGTCCGGCTTTTCAGGCCGGACGGGTGCCTGCCCCTCAGGTGCGAGTTTGTGCGGTAAAGAACACACCCCGGAGATGTGGACACGGCCGCCCCAGGAGGGTCCTTGTTTGG...CTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTC...___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCC	out-of-frame	LTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC092	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87037303	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	2	3	1	114	124	low	.	.	low_entropy(1),mismatches(1)	AGGCAACCAGTGCAGTCCTTATGGAGCAAATTAAG___CTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTGGACATTGTGAGGAACATCCAGCTCTGTGGACGTTGGGGGTAAGAGAGCAGGAATGCGAATGCTAAGAAGCCGAGTAATAGACATATCCATGGTGCCTAGTTTTGCAGCAGAAACACCAAGTAGCAGTCCAATGCTTGTCATTTC	out-of-frame	ATSAVLMEQIKLLKSEIRRLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|anrtsavcl*	.
TALL_VC092	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	2	1	38	11	low	.	.	low_entropy(2)	GTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAG	.	.	.
TALL_VC092	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	0	4	1	28	8	low	.	.	low_entropy(1),mismatches(1)	GCTAGCTCTGCTCTCTGTAGATAACAGCAATGGCAGGCATTCCGGACCATGTGTTTGCAGTGGAGAATGGCTTCAAGGCCCTGAGAAGCACCATTGATGCCGTGAGTGGGTGGAGATGAGGGGCTGGGGGCCTGGCTCACTCTCCCTGCCCCGCCCCACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGC...___TGTTcCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAGGACTGCAAGTATATCGTGG	.	.	.
TALL_VC092	ARAP2	RNU6-573P(442100),ARAP2(10118)	-/-	./-	4:35967823	4:35938103	splice-site	intergenic	deletion/read-through	upstream	downstream	2	1	1	2	6	low	.	.	.	CCGGTCTGGAGTGTGATGGCAAAATCATGGTTCACTGCAACCACTACCTCTCAGGCTCAAGGGGTCCTCCCACCTCAGCCTTCCTAGTAGCTGGGACCACAGGTGTATGCCACCACACCCAG___GAATGGTGATGGTATTCTTTTATCCACTTTGAGAGAAACTTTGAGAATGTGAACAGCCACAAATTTAGAAGTTTCTTTTTTTGCTTTGCTATATACATGGACAATAATCCTGTACCTTGCCTGTGATCTTCCAG|TGTCTGGTTGTGAACCATGAAATTGATTTTACAATCTGCAGTCTGAAATACACTGAACTAACATGTATCGAACATCTGTT?TGTATCAATCTGTTGGATAGGCATTGCATACATGCCACCTCACTGAATTTTGCCCGGATTTGG	.	.	.
TALL_VC092	IRGM	CTC-311G1.2(20489),AC008641.1(17254)	+/+	./+	5:150879646	5:150999664	splice-site	intergenic	deletion/read-through	downstream	upstream	0	4	0	159	38	low	.	.	low_entropy(1),mismatches(1)	GGGAAAGAAGTTCTACATTGTCTGGACCAAGCTAGACATGGACCTCAGCACAGGTGCCCTCCCAGAAGTGCAGCTACTGCAGATCAGAGAAAATGTCCTGGAAAATCTCCAGAAGGAGCGG___CTGGCCTGCCATGAGAAATACCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATAT|GGTCTGCTTACAGAACAAGGCACAGCAAGGAGGCAAGACACAAGCAAGAAATGTGCTTGATGTTACCCACTGCAGTCCTTCTTCCACTCTGGAGGATTCTGAAGACTCAGAAGAGGGACAGGCAATGGATTCAGTCTAAACCCCAGGACCAGGACACTGCCTCAGCTTCGAAGCCTGGATGCAATGCTCCAGGGTATAACCACTGCCCAGAAGCACAGCTAGTACAAGCTGCAGCCTCAATCCAGG	out-of-frame	GKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERlachekylkstpenstrprnm|vclqnkaqqggktqarnvldvthcspsstledsedseegqamdsv*	.
TALL_VC092	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	218	163	low	.	.	low_entropy(1)	AGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAA	.	.	.
TALL_VC092	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	1	1	1	72	569	low	.	.	duplicates(3),low_entropy(1),mismappers(1)	TTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAAT	.	.	.
TALL_VC092	EEF1A1P6	FAM126A	-/-	-/-	7:22511545	7:22903543	exon	intron	deletion/read-through	downstream	upstream	0	0	3	4289	1	low	.	.	mismappers(2),mismatches(10)	...TTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAA[g]TCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTC|...ATCTCTGTTAAAAG	.	.	.
TALL_VC092	RP11-36C20.1	ADAMTS12	+/+	-/+	5:33162787	5:33708411	exon	intron	deletion/5'-5'	downstream	upstream	0	0	3	15	4	low	.	.	mismappers(1),mismatches(3)	AGCAGGGCAAGCTTCTTGCgTGCATCGCTTCAAGGCCGGGACAGTcTGGCCGAGCAGATGGCTATGTGCTAGAGGGCAAAGaGTTGGAGTTCTATCTTAGGAAAATCA...|...AGAAATACCATTCGAC	.	.	.
TALL_VC092	FRAS1	PAQR3	+/.	-/.	4:78330098	4:78897498	intron	intron	deletion/5'-5'	downstream	upstream	0	0	3	1	7	low	.	.	mismatches(1)	.	.	.	.
TALL_VC092	EEF1A1P9	INTS12	+/+	-/+	4:105485658	4:105771887	exon	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	61	3	low	.	.	duplicates(1),mismatches(1)	GGTGGTCACCTTTGCTCCAGTCAACGTTaCAACgGAAGTAAAATCTGTcGAAATGCACCATGAAGCTTTGAGTGAAGcTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTG...|...TTTTTTTCTAATTCTGTtAAGAAAGTCAATGGTAGCTTGATGggGATAGgACTGAATCTATAAATTACTTTGGGCAGTATGGCCATTTTCACGATATTG	.	.	.
TALL_VC092	HERC2P9	FAM189A1	+/+	-/+	15:28684444	15:29135719	exon	intron	deletion/5'-5'	downstream	upstream	0	0	2	270	1	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	CTTGGCAATTCCTCAGGTTCCCAGCACTCCAAAGCCAAGCTCACCTCCTCATCACACaCCCTaCAGGAcAAGCATTAGGGTGTCCGACTACGTGGGTTTCATAGCTGTGGAAAAGCCAA...|...CACCATGAGGCT	.	.	.
TALL_VC092	ADCYAP1	RP11-78F17.1	+/+	+/+	18:951278	18:1133843	intron	splice-site	deletion/read-through	downstream	upstream	1	0	1	17	12	low	.	.	mismappers(2),mismatches(2)	CCGCAAAGTGCTGGACCAGCTGTCCGCCGGGAAGCACCTGCAGTCGCTCGTGGCCCGGGGCGTGGG...AAGGAGAGAAGCTACTCAGGGAGCTCTTGATCCTATGCTCAGGGGGAAACATACCAGGAAATTACAG|GGTCTGGAAATAACTGGGAAAGAAAAGCCTTGTGGAAAGAAGACATCTCCAG___GGAAAAC	.	.	.
TALL_VC092	RAF1	SYN2	-/-	+/-	3:12586713	3:12113193	intron	intron	deletion/5'-5'	upstream	downstream	0	0	2	174	0	low	.	.	mismappers(1),mismatches(1)	TAAAATGGTCTTTCTCAAAGGTACATAAGTGGGTTCTTCAGAAGTCACTATTAGAAGAGGAGAGGGGTTGTTTTTATAGAAGAGTAAATGAAGAAAGGTATTTTTAATGCTGTGAGGCGTGAAATT...|...GATATTGGTACAA	.	.	.
TALL_VC092	MED12L	MSL2	+/+	-/-	3:151193666	3:136152738	splice-site	splice-site	inversion	downstream	downstream	1	0	1	124	527	low	.	.	.	GTGAAAATGGAG___GAACAGAGTATTATGGCGCATATGGGCATTGACTCAGGAACCACTAACATTTTTGATGAAGTAGACAAGAGTGACTTTAAAACTGACTTTGGTTCGGAATTTCCA___ATcTTTTCT...GACCTCCTTCGCCACTTACAGTATGCAACACATTTTCCTATACCTCTG|GACATTTGCTACAAGATCCTATTGCACCCACCAACTCCACCTGCCAACATTATGTCTGCAAAACTTGTAAAGGCAA	out-of-frame	DLLRHLQYATHFPIPL|dicykillhpptppanimsaklvka	.
TALL_VC092	EZH2	FOCAD	-/-	+/+	7:148846497	9:20881871	splice-site	splice-site	translocation	upstream	upstream	0	1	0	118	18	low	.	.	.	GAAAATTTTGGAAAGAACGGAAATCTTAAACCAAGAATGGAAACAGCGAAGGATACAGCCTGTGCACATCCTGACTTCT|CTTTGGAGGAATTTTTTACATCACTTGTGAAGCAAGAAATGGTGAAT...AGGAATCCCCAATTTTATATTGAAAATGTATGAAACAAACAAGCAACCAGGACTGAAACCTGGCCTTGCAG___GTGGTATGTTATTTTGCTATGATGTTTCCATGTATCAGAGTAAAGATGGAAAAC	out-of-frame	KILERTEILNQEWKQRRIQPVHILTS|lwrnflhhl*	.
TALL_VC092	PPIP5K2	GPBP1	+/+	+/+	5:103129703	5:57261180	splice-site	splice-site	duplication	downstream	upstream	0	1	0	108	703	low	.	.	.	CGACATTTCTTCCACCATGCAGATGAAGACGATGAGGAGGAAGATGATTCT|ATTGTTAAAGGAAATGGGCTGGCAGGAAGACAGTGAAAATGATGAAACATGTGCTCCCTTAACTGAGGATGAAATGAGAGAATTCCAAGTTATTAGTGAACAG___TTACAGAAGAATGGTCTGAGAAAAAATGGTATTTTGAAAAATGGCTTGATCTGTGACTTCAAGTTTGGAC	out-of-frame	RHFFHHADEDDEEEDDS|ivkgnglagrq*	.
TALL_VC092	STK10	NPM1	-/-	+/+	5:172187887	5:171405302	splice-site	splice-site	inversion	upstream	upstream	0	1	0	92	4725	low	.	.	.	CGGCGCCTTCGGCAAGGTTTACAAG|GGACAAGAATCCTTCAAGAAACAGGAAAAAACTCCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGAtATTAAAGCAAAAATGCAAGCAAGTATAGAAAAA___GGTGGTTCTCTTCCCAAAGTGGAAGCCAAATTCATCAATTATGTGAAGAATTGCTTCCG	in-frame	GAFGKVYK|GQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCF	.
TALL_VC093	RUNX1	LINC00160	-/-	-/-	21:35048842	21:34734756	splice-site	splice-site	deletion/read-through	upstream	downstream	218	265	42	1059	742	high	.	.	duplicates(52),low_entropy(72),mismappers(26),mismatches(26)	AAACTTCTTTGGGCCTCATAAACAACCACAGAACCACAAGTTGGGTAGCCTGGCAGTGTCAGAAGTCTGAACCCAGCATAGTGGTCAGCAGGCAGGACGAATCACACTGAATGCAAACCACAGGGTTTCGCAGCGTG___GTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAG|ACAGATGCTTCCAGAATCAATCACCGAATGGTGGATCTACAGCCAACCACCCATTCTCTTCAGTCACTGAG___ATGATATGATGCTGCTGGTCCAAGGACTACATTTCGAGAACCCCAACCACGCATGGATTGTTGTCAACTATGAATCACAAG___ATTTCCAGGGTTTTGTCTGCTGCCTTCCCTGCAAGCCCTGCCATCCACTGAGACCCAACCTCAGCCATTCTTGGCACATCAGCCCATGAGAAGTCTGCCACTCTTTCTTCCTAAGCAAAGCAGCATCCTTCAGGGCCTGGAGCTCCTGGACACAAAAGCCATTTTTGGGAG___...TTCTGG...___CCAGCAAAACAGCTGAGGCACAGACTAGATGGTAGTCCAAGGACCAAGACCTGGCCAGCCAGAGGGACCAGGTGTCCAG	out-of-frame	MASDSIFESFPSYPQCFMR|drcfqnqspnggstanhpfssvtemi*	.
TALL_VC093	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	29	44	8	195	103	high	.	.	duplicates(5),low_entropy(5),mismappers(1),mismatches(2)	CTTTTGCTcGGACACCCCACGGCAGTCCGGTGCGCCAAGGGAATGGATTGCCCTACGCCcACACCTGGAGGcCTGTGGGTGTAAGGCGTCCAAGcAGAAAGCTCAGATCTGCCTACAGCAG___ACCTC...CCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCAC	.	.	.
TALL_VC093	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	21	19	3	76	78	high	.	.	duplicates(2),low_entropy(6),mismappers(2),mismatches(2)	GATCAATCACATTAGCTCCTGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTCTG	out-of-frame	INHISSWKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL_VC093	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	20	19	3	82	149	high	.	.	duplicates(2),low_entropy(4),mismappers(2),mismatches(6)	CTCGGTACTTCTTGGCTGTTTGG___...GGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GGGGGGGGAAAGACTGAT?TTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCC...ATTGTGGAGCCCtCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCA	.	.	.
TALL_VC093	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482895	17:4483875	intron	intron	duplication	upstream	downstream	2	4	3	59	91	high	.	.	duplicates(1)	.	.	.	.
TALL_VC093	FBXW7	SH3D19	-/-	-/-	4:152411303	4:151226240	splice-site	splice-site	deletion	upstream	downstream	1	2	0	41	4	high	.	.	.	GAGGATGAGGAGGAGGAGGAGATGGACCAGGAGAGTGACGATTTTGATCAGTCTGATGATAGTAGCAGAGAAGATGAACATACACATACTAACAGTGTCACGAACTCCAGTAGTATTGTGGACCTGCCCGTTCACCAACTCTCCTCCCCATTCTATACAAAAACAACAAAA|GCGAACTGTGATGAAGAGCCTTATACTTAGGAAGACACAACTACCTTTGAACAGTCCTTTGTGAAATCTAATG___ATCGCAACGAACGAAATAAACCAGAACATCGTTCTTCAAG___CCAAGGACCCTTGTCATCCATTAGAGCGGTAATCAAGAGAT___CTTCTCGGACTTCTATTCAGAGTGAACTTCATCGAGATAGAAG___GCGCCCAGAGATCACCATTGTGGC	out-of-frame	EDEEEEEMDQESDDFDQSDDSSREDEHTHTNSVTNSSSIVDLPVHQLSSPFYTKTTK|ancdeepyt*	.
TALL_VC093	FBXW7	SH3D19	-/-	-/-	4:152411303	4:151226086	splice-site	splice-site	deletion	upstream	downstream	0	1	0	41	5	low	.	.	.	GAACATACACATACTAACAGTGTCACGAACTCCAGTAGTATTGTGGACCTGCCCGTTCACCAACTCTCCTCCCCATcCTATACAAAAACAACAAAA|ATCGCAACGAACGAAATAAACCAGAACATC...CCATTAGAGCGGTAATCAAGAGAT___CTTCTCGGACTTCTATTCAGAGTGAACTTCATCGAGATAGAAG___GCGCCCAGAGATCACCATTGTGGCAGCTGAGCCACTGAGGCCAGCCTCGTGGTTTCCAG	out-of-frame	EHTHTNSVTNSSSIVDLPVHQLSSPsYTKTTK|iatneinqn	.
TALL_VC093	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	2	0	16	149	medium	.	.	duplicates(1),low_entropy(2),mismappers(1),mismatches(1)	CCGGGCTCCACGCCGCGGGCAGGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGG?CAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCC	.	.	.
TALL_VC093	RUNX1	LINC00160(6362),LINC01426(2214)	-/-	./-	21:35048842	21:34743543	splice-site	intergenic	deletion/read-through	upstream	downstream	2	2	0	1059	29	medium	.	.	low_entropy(1),mismatches(2)	GTCTGAACCCAGCATAGTGGTCAGCAGGCAGGACGAATCACACTGAATGCAAACCACAGGGTTTCGCAGCGTG___GTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAG|TGAACGTCTGAATGGCTAGAAATATTTGGAGATTGTGCCCGGAcGACAGCTGCAGAGAAGTGACCGTGGCTGACCCTGGACAGCAG...TGCTGGGAATCGTCAGGTCCTCTGCCAGGCTTcCCTGGGGAGCACCAGGTGAAGTATCATGGATTTGAGGTCCTCTGTACTGGAGGCAGGACGCAGACACCAAGAACACCTCCAG	out-of-frame	MASDSIFESFPSYPQCFMR|vnv*	.
TALL_VC093	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510702	7:22353737	exon	intron	deletion/read-through	upstream	downstream	0	0	28	749	4	low	.	.	duplicates(2),low_entropy(8),mismatches(69)	CTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTT...|...ACAAATGAGGG	.	.	.
TALL_VC093	DNAH11	EEF1A1P6	+/+	-/+	7:21887461	7:22510781	intron	exon	deletion/5'-5'	downstream	upstream	0	0	25	13	2623	low	.	.	duplicates(1),low_entropy(7),mismappers(1),mismatches(68)	ACAAGAATCTG...|...CCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAACGGCGATCAATCTTTTCCTTCAGCTCAGCAAACTTGCATGCAATGTGAGCCGTGTGGCAATCCAATACAGGGGCATAGCCGGcGCTTATTTGGCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCaGCTGCTTCCATTGGTGGGTCATTTTTGCTGTCACCAGCaACGTTGCCACGACGAACATCCTTGACAGACACATTCTTGACATTGAAG	.	.	.
TALL_VC093	TRIO	EEF1A1P13	+/+	-/+	5:14504519	5:14652038	CDS	exon	deletion/read-through/5'-5'	downstream	upstream	0	0	22	159	46	low	.	.	duplicates(1),low_entropy(9),mismatches(47)	GGCAGATTCTCTGTCGTTAAGAAATGTGATCAGAAAGGAACCAAGCGAGCAGTGGCCACTAAGTTTGTGAACAAGAAGTTGATGAAGCGCGACCAGGTCACCCATGAGCTTGGCATCCTGCAGAGC...|...CTCATATCACGAACAGCAAAGCGACCCAAAGGTGGATAGTCTGAGAAGCTCTCAaCACACATGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCaGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAACGGCGATCAATCTTTTCCTTCAGCTCAGCAAACTTGCATGCAATgTGAGCCGTGTGGCAATCCAATACAGGGGCATAGCCgGCGCTTATTTGGCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGTCATTTTTGCTGTCACCAGCAACGTTGCCACG	.	.	.
TALL_VC093	RUNX1	LINC01426	-/-	+/-	21:34971294	21:34771183	intron	intron	deletion/read-through/5'-5'	upstream	downstream	0	6	9	30	11	low	.	.	duplicates(2),low_entropy(1),mismappers(4),mismatches(7)	GGCTGATAAAAATTTTAAATGTATCTGGAAGGTGATAAAAATGATCCAGATAGTAAAGTACCTTCTTAAGATAAAGCAAAAGAATTATCATTCTTTAGAGTGATTATAAGGAAGAATTAATATTAACAAAATTCTCAATGTTTGGCCTTTCCCAGGATTCTCCTTATCAATCTATTATTTAGAAATCAATTAAGGGAAGTTAAGAAATTTTAA|g|AaaatTtaAaAaacTTTAATACTGCAATAAAATGAGAGAAAAAGAATTACAGAAAATGAAACAAATAGAAAATCAAAGACAAAAGGGTAGATTTCAAACCACATATCTCAGAAACTATATTAAATACAAAGATTAAATGTTTTGGTACAATGACAAAGACTAGGAGACATGATAAAAAATATGCTGCTAATAAGCACAACTTAAATATGAGTATA	.	.	.
TALL_VC093	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	8	0	42	37	low	.	.	low_entropy(5)	GGTTGATATCCTATGTCTTTCCTCAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTA	.	.	.
TALL_VC093	EEF1A1P6	FAM126A	-/.	-/.	7:22511811	7:22915009	exon	intron	deletion	downstream	upstream	0	0	9	2512	0	low	.	.	low_entropy(3),mismappers(1),mismatches(22)	.	.	.	.
TALL_VC093	EEF1A1P19	ZNF131	-/-	+/-	5:43495045	5:43170011	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	9	44	2	low	.	.	low_entropy(1),mismatches(15)	TGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCgcTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGcTGGCAAGGTCACcAAGTCTGCCCAGAaAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCcAC...|...GAGACCAGCCTGGCCAACATAGTGAAACCCCGTCTCTACTAAAAATACAAAAA	.	.	.
TALL_VC093	MPRIP	RPL13P12	+/+	-/+	17:17204089	17:17383641	intron	exon	deletion/read-through/5'-5'	downstream	upstream	0	0	9	7	420	low	.	.	low_entropy(1),mismatches(11)	TCCAAACACATTCC...|...GAGTTTGGAGCGGTACTCCTTCAGCCGCTGCACGTTgGCCTGCAGGGACTCCGTGGACTTGTTCCGCCTCCTCGGATCCACAGAAATGCCGATGGTCCGGGCCACCTTCTTGTGAATGCCGGCCACCCTGAGCTCCTCCAGgcTGAAGCCGCGGCCGGCGCGCACCTTCG	.	.	.
TALL_VC093	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	5	2	71	44	low	.	.	low_entropy(3),mismatches(2)	AGAACCGGCCGCTGCCCGCCCTGCAGGTGCCCGAGCCGCAGGGTGCGCCCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCC	.	.	.
TALL_VC093	IGF2BP3	EEF1A1P6	-/-	-/-	7:23310491	7:22511373	3'UTR	exon	deletion	upstream	downstream	0	0	8	1	353	low	.	.	duplicates(3),low_entropy(1),mismappers(2),mismatches(38)	GATTTTTTTCCCC...|...TGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAA	.	.	.
TALL_VC093	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	3	1	72	15	low	.	.	mismappers(3)	GCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGG...GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAG	out-of-frame	QGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC093	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	2	101	145	low	.	.	mismappers(1)	TTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGC	out-of-frame	VLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC093	EEF1A1P11	PTBP2	+/+	+/+	1:96448021	1:96738390	exon	intron	deletion/read-through	downstream	upstream	0	0	6	39	3	low	.	.	mismatches(1)	TGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCgTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCaGGCCAAATAAGCgCcGGCTATGCcCCTGTATTGGATTGCCAC...|...CAGCCTCCCGAGTAGCTGGGACTGCAGGTGCCTGCCACCACgCCcGGCTAATTTTTTGTATTTTTAGTAGA	.	.	.
TALL_VC093	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	4	0	78	5	low	.	.	.	CTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAG	.	.	.
TALL_VC093	EEF1A1P13	DNAH5	-/-	-/-	5:14652268	5:13924687	exon	intron	deletion	upstream	downstream	0	0	5	187	1	low	.	.	mismatches(16)	CAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATA...|...TTTTTTTTTTTTGAGACGGAGTTTT	.	.	.
TALL_VC093	GAS2	RP11-17A1.3	+/+	+/+	11:22775348	11:22834907	intron	splice-site	deletion/read-through	downstream	upstream	0	5	0	304	38	low	.	.	low_entropy(3),mismappers(2),mismatches(1)	TTGAAAAGGTATAAAGTTGGAGGACGAGCATTCCACCGTTTTGGCTTGGAGAGTGTGGAGGTCAAGAGGGTGGCAGCTCATTCTGGGGACCTACCTCTTGAAATTCCAG|AGTTCCACTCTTTTTGTCGACAATAATATGGCGCCCAAACACGTGGGGCCTCAGAGAAGACTCTGGATCCGGAAGGAGTATCCCAAAACCAGAGCTAAGGTACCAGCTGGAGCCCACTGAAGCCTCACCGAGTTTGGGCTTCTCCTCCTGTGGAACTG___GAAACCAAAATCATGGTATTTTGAAAACCAGAGGTATGAATCTCCCTCGTTTGGC	.	.	.
TALL_VC093	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	132	357	low	.	.	low_entropy(1)	GTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC093	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	23	357	low	.	.	read_through(7)	CGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACC...AAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGG...CACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGG	out-of-frame	ISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC093	MTRNR2L8	SBF2	-/-	-/-	11:10508674	11:10178647	5'UTR	intron	deletion/read-through	upstream	downstream	0	0	4	28	4	low	.	.	low_entropy(1),mismatches(6)	TAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTtaTAGGTAGAGGCGACAAACCTACCGAGcCTGGTGATAGCTGGTTGTCCAAGAtAGAATCTTAGTTCAACTTTAAATTTgCCCACAGAACCCTCtAAATCCCCtTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAgAGAGAGTAAAAAATTTAAcACCCAtAGTAGGCCTAAAAGCAG...|...GTATCTCAcTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGGTGAGCATTTTTTCgTGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTT	.	.	.
TALL_VC093	PLXNA4	CHCHD3	-/.	-/.	7:132553676	7:133034871	intron	intron	deletion	downstream	upstream	0	0	4	0	266	low	.	.	low_entropy(3),mismatches(11)	.	.	.	.
TALL_VC093	EEF1A1P12	RGPD3	-/-	-/-	2:106697981	2:106464810	exon	intron	deletion/read-through	upstream	downstream	0	0	4	14	1	low	.	.	mismatches(1)	TGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGC...|...CAGAGGTTGTGGTGAGCAGAtATTGCACCACTGCACTCCAGCCTGTGTGACAGAGCGAGACTCTGTCTCCAAAAAAGAAAAAAAGAAAAAAAaATATAATTcTTTCTCTAGTTTTTCTTTTTCC	.	.	.
TALL_VC093	EEF1A1P9	INTS12	+/+	-/+	4:105486021	4:105709694	exon	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	4	208	6	low	.	.	duplicates(1),mismatches(10)	GCcGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGAtTGATCGCCgTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCaTGTgTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCgTGATATgAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGA...|...TTCCTTGTCATAAA...CAAAAGCTAGCAAGAA	.	.	.
TALL_VC093	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	1	3	0	8	6	low	.	.	.	ACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTG	.	.	.
TALL_VC093	EEF1A1P6	CDCA7L(92083),RAPGEF5(80071)	-/-	./-	7:22510781	7:22038167	exon	intergenic	deletion	upstream	downstream	0	0	4	2623	1	low	.	.	low_entropy(2),mismappers(1),mismatches(34)	TGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTAT...ATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGG...|...TGGTGCACATCTGT	.	.	.
TALL_VC093	RANBP17	NPM1	+/+	+/+	5:171298194	5:171395397	intron	intron	deletion/read-through	downstream	upstream	0	0	4	33	26	low	.	.	low_entropy(4),mismappers(6),mismatches(6)	AGGTAACTAC...|...TCAAGTGATTCTCCTGCCTCGGCCTCCAGAGTAGCTTGGATTACAGGCACTTGCaACCACGCCTGGCTAAGTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAAGCTGGTCTCGA	.	.	.
TALL_VC093	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	0	0	537	58	low	.	.	duplicates(1),mismappers(1)	AGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___...TTTGTGACCAACTC?ACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAG	.	.	.
TALL_VC093	MYRIP	RP11-761N21.2	+/.	+/.	3:40157437	3:40761612	intron	exon	deletion	downstream	upstream	0	0	3	6	126	low	.	.	mismatches(3)	.	.	.	.
TALL_VC093	ARHGAP24	MAPK10	+/+	-/+	4:85994947	4:86051234	CDS	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	31	0	low	.	.	low_entropy(1),mismappers(1)	GGATCCCCCACAGCTCTATCAGGCAGCAAAACCAACAGCCCAAAGAACAGTGTTCACAAGCTAGATGTGTCTAGAAGCCCCCCTCTCATGGTCAAAAAGAACCCAGCCTTTAATAAGGGTAGTGGG...|...CACATACTCC	.	.	.
TALL_VC093	RGPD1	MIR4435-1(7525),AC133965.1(17531)	+/.	./.	2:86998963	2:87637359	intron	intergenic	deletion	downstream	upstream	0	0	2	1	0	low	.	.	.	.	.	.	.
TALL_VC093	MPPED1	EFCAB6	+/+	-/+	22:43502705	22:43644918	CDS	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	2	2	low	.	.	mismatches(2)	GCTCAACACG...|...AAAGAGTaTTCCACATAACTTCTTAATTTCTACATTCCCTCCCTTACTCTTCGGGGGTTTCCTTTCAgTAAGCAACTTTTCCATGCTCTTAATGTATTCCTTTTTAGTAGGAATCCGGAAGTATTAGATTGAAT	.	.	.
TALL_VC093	SLAIN2	FRYL	+/.	-/.	4:48409670	4:48502093	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	5	16	low	.	.	duplicates(1),mismappers(1)	.	.	.	.
TALL_VC093	RFWD2	PJA2	-/-	-/-	1:176135010	5:109368746	splice-site	splice-site	translocation	upstream	downstream	0	1	1	96	202	low	.	.	.	GAAATGAGTGGCTTATACTCTCCTGTCAGTGAGGATAGCACAGTGCCTCAATTTGAAGCTCCTTCTCCATCACACAG|TTCTGAATGCAGTGATGGGGAATGGTCTGCTTCTTTGCCTCATCGATTTTCTGGTACAGAAAAAGATCAATCCTCAAGTGATGAAAGCTGGGAGACTCTGCCAGGAAAAGATGAGAATGAACCTGAGCTACAAAGTGATAGCAGTGGCCCTGAAGAAGAAAACCAAG	in-frame	EMSGLYSPVSEDSTVPQFEAPSPSHs|SECSDGEWSASLPHRFSGTEKDQSSSDESWETLPGKDENEPELQSDSSGPEEENQ	.
TALL_VC093	PRRC2C	PA2G4	+/+	+/+	1:171587751	12:56110399	splice-site	splice-site	translocation	downstream	upstream	0	1	1	371	931	low	.	.	.	AAACCAGGCACACCTCCAATCGCTGGTAGAAGCACCACACCAACATCTAGTCCCTTCCG|GAAGGACCATGAAAAAGCTGAATTTGAGGTACATGAAGTATATGCTGTGGATGTTCTCGTCAGCTCAGGAGAGGGCAAG___GCCAAGGATGCAGGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACAGTATGGACTGAAAATGAAAACTTCACGTGCCTTCTTC	in-frame	KPGTPPIAGRSTTPTSSPFr|KDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAF	.
TALL_VC093	TBKBP1	PDK3	+/+	+/+	17:47699697	X:24494742	splice-site	splice-site	translocation	downstream	upstream	1	0	0	71	37	low	.	.	.	GCACTACCTGGCACTGAGAGGGGGATCTGGCTTGAGTCATG___CAGGCTGGCCGGGCTCCACACCCAGTGTGAGTGACCTGGAGCGGCGGCGGCTAGAAGAGGCTTTGGAGGCCGCGCAGGGAGAGGC...GGATCTGGCCTCCAACCAGTCGGAGCGAGACATGGCGTGGGTGAAAAGAGTTGGGGATGATCA|GGAGAGATAATGCATGTGAGAAAACTTCATATATGTTTCTACGAAAGGAACTTCCTGTGCGGC	out-of-frame	DLASNQSERDMAWVKRVGDDq|er*	.
TALL_VC093	CLIC4	SETD3	+/+	-/-	1:24745625	14:99400259	splice-site	splice-site	translocation	downstream	downstream	0	1	0	55	220	low	.	.	.	GTCGATGCCGCTGAATGGGCTGAAGGAGGAGGACAAAGAGCCCCTCATCGAGCTCTTCGTCAAG|AAGAACTGAAAGAACACTTGCTGGGAGACAGCGCTATTGATAGAATCTTCACCTTGGGGAAC...CTTGAAGATAGAGCCTCACTTCTTTTAAAAACATATAAAACAACgATaGAG___tAAGATAAAgCCGTCTTGAAAAACCACGATCTTTCTGTTCGTGCAAAAATGGCCATCAAATTGCGCTTAGGTG	out-of-frame	SMPLNGLKEEDKEPLIELFVK|kn*	.
TALL_VC093	ELK4	WHSC1	-/-	+/+	1:205616478	4:1974863	splice-site	splice-site	translocation	upstream	upstream	0	1	0	157	351	low	.	.	.	CCCAGACCTACAGAAGACATAACCTATGCACTTGTGGAATGAGAGAACCGAGGAACGAAGAAACAGACATTCAACATGATTGCATTTGAA|GACCGTATAATAGACGCTGGCCCCAAAGGAAACTAC...CGATTTATGAATCACAGCTGCCAGCCCAACTGTGAGACCCTCAAGTGGACAGTGAATGGGGACgCTCGTGTGGGCCTGTTTGCCGTCTGTGACATTCCTGCAG___GGACGGAGCTGACTTTTAAC	out-of-frame	PDLQKT*pmhlwnerteerrnrhst*lhlk|tv*	.
TALL_VC093	GAK	DHX15	-/-	-/-	4:932043	4:24556410	splice-site	splice-site	duplication	upstream	downstream	0	1	0	98	588	low	.	.	.	GTGACTTCGTGGGGCAGACGGTGGAACTGGGtGAGCTGCGGCTGCGGGTGCGGCGGGTCCTGGCCGAAG|GTATATGACTGATGGGATGTTACTTCGTGAAGCTATGAATGATCCCCTCCTGGAGCG...TCTGAAGGAAGTTGTAAGACAGAGATCAGATTTAAAG___GTTATAGTTATGAGCGCTACTCTAGATGCAGGAAAATTCCAGATTTACTTTGATAACTGTCCTCTCCTAACTATTCCTGGGCGTACAC	out-of-frame	DFVGQTVELGELRLRVRRVLAE|gi*	.
TALL_VC093	FBXW7	C7orf55-LUC7L2	-/-	+/+	4:152534941	7:139422163	splice-site	splice-site	translocation	upstream	upstream	1	0	0	40	682	low	.	.	.	GACGGGCAGAAGCCGCAGCCTGAAAAGACCCAGGAAGAGGAAAAGAGGAG___TACCGCGCCGGAGCCTTCCGCAGCTGCCGCTTCAGTCCGAAGGAGGAAGGGAACCAACCCACTTTCTCGGCGCCGCGGCTCTTTTCTAAAAGT|ATCCTCAAAAGAAAGATTCAGAGACCAAGACTTAGCATCATGTGACAGAGACAGGAGTTCAAGAG	out-of-frame	ilkrkiqrprlsim*	.
TALL_VC093	NT5C2	ZFAND3	-/-	+/+	10:103174858	6:38152235	splice-site	splice-site	translocation	upstream	upstream	1	0	0	368	95	low	.	.	.	CAGCCCAAGTGCCAGCAGACACAGCACAAGAGACTAAAACTCAACGGCGGGAGGCTGG___AATACAAAATACAGTTAAAATAAAATGTCAACCTCCTGGAGTGATCGGTTACAGAATGCAGCAGATATGCCTGCTAACATGGATAAGCATGCCCTGAAAAAGTATCGTCGAGAAGCCTATCATCG|GTTATGTGTTCTGTATGTTACATCGCCTCCCCGAG	out-of-frame	MSTSWSDRLQNAADMPANMDKHALKKYRREAYHr|lcvlyvtsppr	.
TALL_VC093	CCBL1	FNBP1	-/-	-/-	9:128881897	9:129908999	splice-site	splice-site	duplication	upstream	downstream	0	1	0	18	389	low	.	.	.	CTGCAACCTACGGGGTGTACTTGGGAACGAGGGGTGAAGCGGCCCAGGTGAGG|GGTGCAACACCGGAGGATTTCAGCAACCTCCCACCTGAACAAAGAAGGAAAAAGCTGCAGCAGAAAGTCGATGAGTTAAATAAAGAAATTCAGAAGGAGATGGATCAAAG___AGATGCCATAACAAAAAT	.	.	.
TALL_VC093	XG	CD99	+/+	+/+	X:2752335	X:2714422	splice-site	splice-site	duplication	downstream	upstream	1	0	0	976	10871	low	.	.	.	CCGGGTCTCACAATCCGCTTGGCTGGGGAGTCCACTGAGGTTCTTGCATCCTGAAGCAAACCATGGAGAGCTGGTGGGGACTTCCCTGTCTTGCGTTCCTGTGTTTTCTAATGCACGCCCGAG|ATGGTGGTTTCGATTTATCCGATGCCCTTCCTG	in-frame	MESWWGLPCLAFLCFLMHAR|dGGFDLSDALP	.
TALL_VC093	XG	CD99	+/+	+/+	X:2752335	X:2738200	splice-site	splice-site	duplication	downstream	upstream	1	0	0	976	9512	low	.	.	.	GCCGGGTCTCACAATCCGCTTGGCTGGGGAGTCCACTGAGGTcCTTGCATCCTGAAGCAAACCATaGAGAGCTGGTGGGGACTTCCCTGTCTTGCGTTCCTGTGTTTTCTAATGCACGCCCGAG|CAGAACAAGGGGAGGTGGACgTGGAGAGCCACCGGAATGCCAtCGCAGAGCCAGCTG___TTCAGCGTACTCTTTTAGAGAAATAGAAGATTGTCG	in-frame	iESWWGLPCLAFLCFLMHAR|aEQGEVDvESHRNAiAEPAVQRTLLEK*	.
TALL_VC094	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	26	26	12	510	271	high	.	.	duplicates(10),low_entropy(11),mismappers(11),mismatches(7)	TTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCC	.	.	.
TALL_VC094	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	10	13	14	194	271	high	.	.	duplicates(3),low_entropy(1),mismappers(12),mismatches(8)	CTTTGGCAAATCATGCTACATGCAATTTTTCCAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAA	.	.	.
TALL_VC094	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	29	4	2	192	271	high	.	.	duplicates(15),low_entropy(6),mismappers(63),mismatches(9)	GAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___...ATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCCTGCCCTTTACATTTTAACTCCCTTCA	.	.	.
TALL_VC094	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	8	11	12	178	271	high	.	.	duplicates(4),mismappers(11),mismatches(6)	GGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAAT	.	.	.
TALL_VC094	AC013463.2	SCN2A	+/+	+/+	2:165091299	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	7	2	376	271	medium	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(5)	ATCAATTCCAGCTTCCTTTTTAACATAGGCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGG...CATTATGTGCACGATTCTTACCAACTGTGTATTTATGACCATGAGTAACCCTCCAGACTGGACAAAGAATGTGGA___GTATACCTTTACAGGAATTTATACTTTTGAATCACTTATTAAAATACTTG	.	.	.
TALL_VC094	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	11	4	56	68	high	.	.	duplicates(3),low_entropy(1),mismatches(3)	CAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTG___...TTTTTTTTTTT?GTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCC...ACCAACCACtGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGG	.	.	.
TALL_VC094	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	3	15	0	107	38	high	.	.	low_entropy(1),mismatches(1)	AAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCC	.	.	.
TALL_VC094	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	19	33	4	135	92	medium	.	.	duplicates(5),low_entropy(2),mismatches(2)	CCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAG...___TGTCTGAGTGCTATGAAGATTGCACA...GCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAG	.	.	.
TALL_VC094	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	3	1	6	120	35	medium	.	.	low_entropy(1)	CAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTGCAG...___...AAGTTTAAAGTTTAAGTAAAAAAATGAATAGCTTTCTTCAG___CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTA	out-of-frame	QGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|wlyassssscs*	.
TALL_VC094	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	4	120	187	medium	.	.	duplicates(1),low_entropy(2)	CAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCG	out-of-frame	QGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC094	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	2	187	187	medium	.	.	low_entropy(1)	CAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCG	in-frame	ACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSA	.
TALL_VC094	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	0	120	23	medium	.	.	low_entropy(1)	ATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCGAGGATTTAGCTAGCTGGTGACGCCGGAGCACGAAGTTGTAC	out-of-frame	FFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
TALL_VC094	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	2	7	0	33	32	low	.	.	duplicates(2),low_entropy(1),mismatches(1)	CAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGC	.	.	.
TALL_VC094	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	3	2	0	33	48	low	.	.	.	CGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGGGGCGGCGCCGC	.	.	.
TALL_VC094	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	3	1	184	564	low	.	.	duplicates(2),mismappers(1)	TGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC094	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	32	564	low	.	.	duplicates(1),read_through(18)	CTTAGAAGTGGGAGCTGAACG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTAC	out-of-frame	MKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC094	KIFC1	SYNGAP1	+/+	+/+	6:33409706	6:33432468	3'UTR	intron	deletion/read-through	downstream	upstream	9	0	0	240	2	low	.	.	duplicates(3),low_entropy(20),mismatches(11)	CTCCAGCCGAGGCCTGCAGTGTGGGGCCCCCCTCAGTCTTGTGGACCTGGCCGGGAGTGAGCGACTTGACCCCGGCTTAGCCCTCGGCCCCGGGGAGCGGGAACGCCTTCGGGAAACACAGGCCATTAACAGCAGCCTGTCCACGCTGGGGCTGGTTATCATGGCCCTGAGCAACAAG___GAGTCCCACGTGCCTTACCGGAACAGCAAACTGACCTACCTGCTGCAGAACTCTCTGGGTGGTAGTGCTAAGAT___GCTCATGTTTGTGAACATTTCTCCACTGGAAGAGAACGTCTCCGAGTCCCTCAACTCTCTACGCTTTGCCTCCAAG___GTGAACCAGTGTGTTATTGGTACTGCTCAGGCCAACAGGAAGTGAAGACGGATCCAGATCT|CTGTGTGTGTGTGTATcaGTGTGT...TGTGTGTGTGTGTGTGTGTGTGTGC	out-of-frame	SSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQCVIGTAQANRK*rriqi|svcvcisv	.
TALL_VC094	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	6	0	26	17	low	.	.	low_entropy(3)	GCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCG...GGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAG	.	.	.
TALL_VC094	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510567	7:22325171	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	7	1162	3	low	.	.	low_entropy(4),mismappers(2),mismatches(19)	AAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGA...|...AGAATGTTTGGGGGA	.	.	.
TALL_VC094	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511106	7:23325383	exon	intron	deletion	downstream	upstream	0	0	6	9548	1	low	.	.	mismappers(1),mismatches(12)	.	.	.	.
TALL_VC094	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	0	0	867	88	low	.	.	duplicates(2),low_entropy(1),mismappers(1)	CTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAG	.	.	.
TALL_VC094	EEF1A1P6	DNAH11	-/-	+/-	7:22510807	7:21838957	exon	intron	deletion/5'-5'	upstream	downstream	0	0	4	1332	0	low	.	.	duplicates(1),low_entropy(2),mismappers(1),mismatches(20)	GTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGAT...|...GCTAATGGGA	.	.	.
TALL_VC094	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	4	0	0	13	7	low	.	.	mismappers(1)	CAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATT...ATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAGTCCATCCTGGCTAACACgGTGAAAACCCATCTCTACTAAAA	.	.	.
TALL_VC094	RP11-286B14.1	EEF1A1P11	+/.	+/.	1:95750830	1:96447068	intron	exon	deletion	downstream	upstream	0	0	4	1	44	low	.	.	low_entropy(2),mismatches(5)	.	.	.	.
TALL_VC094	ZNF215	ZNF214	+/+	-/+	11:6955782	11:7000694	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	2	1	0	28	7	low	.	.	.	CCAAGGAAGACTATTTTTG___ACATGAAGAGTATTTCTGGAGAAGAATCATCCCATGGAGTGATTATGACAAGGCTTACCGAAAGTGGtCACCCTTCTTCAGATGCCTGGAAAG|AATTTCTCTTCTGTGTGGACTCTTTGATGATTGTGAAGACTAGAGATCTGGCTGAAGCTCTTACCACATGCATTACAGCTATAAGGTACCTCCCCTATGTGAACTCTCTGATGgAAGTGAACTCCGGAGCTCTGATGAAAGTTACCGTCAACTTCATCACATCCGTACAGCTTCTTAC	out-of-frame	PRKTIFDMKSISGEESSHGVIMTRLTESGHPSSDAWK|eflfcvdslmivktrdlaealttcitairylpyvnslmevnsgalmkvtvnfitsvqll	.
TALL_VC094	EEF1A1P13	DNAH5	-/-	-/-	5:14651963	5:13934338	exon	intron	deletion	upstream	downstream	0	0	3	28	0	low	.	.	mismatches(7)	GAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAgACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAgTCTGC...|...CTTCTGCAGGTGCCATT	.	.	.
TALL_VC094	ANKRD36	RP11-734K23.9	+/+	+/+	2:97245640	2:97284690	CDS	splice-site	deletion/read-through	downstream	upstream	1	2	0	349	546	low	.	.	duplicates(1),mismatches(1)	GATAAATGTCGTCACTTACAGGAAAATTTGAATTCTCATGTTCTGATTCTTTCTCTGCAACTTTCTAAAGCTGAGA|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTTGGACATCTGTAGTATTCC	out-of-frame	DKCRHLQENLNSHVLILSLQLSKAE|ispqtlpkavlhysgrqt*	.
TALL_VC094	H3F3AP4	CHN1	+/+	-/+	2:174720332	2:174807806	3'UTR	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	3019	0	low	.	.	mismatches(1)	GAAACCTCATCGTTACAGGCCTGGTACTGTGGCGCTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTT...TCTGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAAGAATCCACTATGAT...|...AAAGATTGTAC	.	.	.
TALL_VC094	AC005592.2	ARHGAP26	+/.	+/.	5:142641152	5:142959502	intron	intron	deletion/read-through	downstream	upstream	0	0	3	0	21	low	.	.	duplicates(1),mismatches(3)	.	.	.	.
TALL_VC094	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	0	0	59	8	low	.	.	low_entropy(1),mismappers(2),mismatches(1)	GGAG___GGGTCATTGTCATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAG	out-of-frame	EGSLSFEDVAVGFTREEWQFLDQSQKVLYKEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC094	GPC6	GPR180	+/+	+/+	13:94387731	13:94612797	intron	intron	deletion/read-through	downstream	upstream	0	0	2	0	10	low	.	.	mismappers(1),mismatches(1)	GACATGAGTTT...|...AACAAATTAAACAATTTAAATTGTTAATGATTAAATGAGATTAGAAcCTCAGCTACTTTGTATGGGTAgCTCTGTACTAGCTTGTTTGAACAGATTTAGGGATTGCCTTCATTGAAGCTTACAAC	.	.	.
TALL_VC094	TMEM131	AC159540.1	-/-	-/-	2:97770571	2:97431795	intron	intron	deletion/read-through	upstream	downstream	0	0	2	5	172	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(6)	CCCCCATCCCTGTTCCACTGACTTACATTGTATTCTGATTTTTTTTACAAGTTGACCATCAGCAAATTTGCATTTGAAAAGTTAGTCAAAGACGTCGCTTGAGTGTC...|...GGACAATCAAAGTGCTTCATTAAGCAAGTCCTGGATCCTGTGCCCCTCAACTGGGTGAAACACCCCAGTGGGTCACCAGACACCTTATACAGGAGCATTTCTACTGGCATCAGGTGGGTGCC	.	.	.
TALL_VC094	FAM3C	KCND2	-/-	+/-	7:121349561	7:120707142	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	2	69	1	low	.	.	duplicates(1),mismappers(1)	ATTCAGGACAGCTAAGTCAGTATATTTAGAGCAATACTAGCATACGTTTTTCTTAATTGTTATCAGCATTGACCAAGTGGTTTGGAAGGAGGCATGCTTTAATATCACAATAATTTTGATTTGTA...|...TGTTAAACCAA	.	.	.
TALL_VC094	SPIDR	MCM4	+/+	+/+	8:47705920	8:47965217	intron	intron	deletion/read-through	downstream	upstream	0	0	2	1	8	low	.	.	low_entropy(2),mismappers(3),mismatches(4)	TGAGACCCTGTCTCAAAAAAAAAAAAAttAGATT...|...AAAAAAAAAAAAATTAGATTTTAAAGATTTGAGGATCACTTGAGGCCAGGAGTTTGAGACCAGCTTGAGTGACATAAGAGACTCCATCTCTTTTTAAGAAGAAATTAGCAAGGCACAGTGGC	.	.	.
TALL_VC094	LRP12	RIMS2	-/-	+/-	8:104490510	8:104241715	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	129	3	low	.	.	duplicates(1),mismappers(2),mismatches(2)	GCAATATCCATTTATTATTTTGTAACTTTACAGTTAAACTAGTTTTAGTTTAAAAAGAAAAAATGCAGGGTGATTTCTTATTATTATATGTTAGCCTGCATGGTTAAATTCGACAACTTGTAACTC...|...AGTGTGTCTC	.	.	.
TALL_VC094	TPGS2	CELF4	-/.	-/.	18:36800936	18:37256810	intron	intron	deletion	downstream	upstream	0	0	2	8	1	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL_VC094	CPVL	CREB5	-/-	+/-	7:29018549	7:28631669	intron	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	2	1	low	.	.	duplicates(1),mismappers(1)	GGCAGGGTTGCTGACGCCTGTAATCCAAGCACTTTGGGAGGCTAAGGTGGGTGGATCACTTGAGGCCAGGAGTTtGAGACCAGCCTGGCCAACATGGTGAAAtcTCATCTCTACTAAAAATACAA...|...TCtCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCG	.	.	.
TALL_VC094	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	5	2	low	.	.	.	GGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTAC...GAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAG	out-of-frame	KPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqk	.
TALL_VC094	COG5	UBLCP1	-/-	+/+	7:107362033	5:159283212	splice-site	splice-site	translocation	upstream	upstream	0	2	0	76	165	low	.	.	.	GAGAGATCCTGTTTCTCACATTTGTTTCATTGAAGAAATAGTTAAG|ATAAGGCCTTTTATGAAAGCGCACCTAAATCGTGATAAAGACAAAGAACTTTTAAAATTAACTCAGTACCTCAAGGAGATAGCAAAATTAGATGACTTTTTGGATCTAAATCACAAATATTGGGAAAG___AT	in-frame	RDPVSHICFIEEIVK|IRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDFLDLNHKYWER	.
TALL_VC094	MSI2	TBCD	+/+	+/+	17:57401471	17:82900651	splice-site	splice-site	deletion	downstream	upstream	0	1	1	585	761	low	.	.	.	TTGTAGGCGGGTTATCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAG|TGTGTTTATTGCCGGCTTTCCTGAGTACACGCAGCCAATGATAGACCACCTGGTTACCATGAAGATCAGCCACTGGGATGG___GGTCATCCGAGAGTTGGCTGCGAGGGCGCTGCACAACCTGGCCCAGCAGGCACCCGAGTTCAGCGCCACGCAAG___TCTTC	out-of-frame	VGGLSANTVVEDVKQYFEQFGK|cvycrls*	.
TALL_VC094	RNF220	TMEM53	+/+	-/-	1:44632385	1:44655119	splice-site	splice-site	inversion	downstream	downstream	0	1	0	255	9	low	.	.	.	ACCTTTCTGCGAGTACGAGCCAACCGGCAGACCCGACTGAATG|AAGCTGCTCGAGCTGCTCTTTGATTATGAGATTGAGAAGGAGCCCCTGCTCTTCCATGTCTTCAGCAACGGTGGCGTCATGCTGTACCGCTACGTGCTGGAGCTCCTGCAGACCCGTCGCTTCTGCCGCCTGCGTGTGGTGGGCACCATCTTTGACAGCG	out-of-frame	TFLRVRANRQTRLN|eaaraal*	.
TALL_VC094	MAD1L1	SUN1	-/-	+/+	7:2229984	7:832505	splice-site	splice-site	inversion	upstream	upstream	1	0	0	45	109	low	.	.	duplicates(1)	GCGGCGGCGGCAAGCTGGCTGCGAGCGGCTGAG___CAGCACTCCAAGCTCGCCGGCCTTTGGTCTCCAGGACTTGTCCCAGCAGCCCCTCGAACTGAGAATTACACCATCGGACCCCTGGCTCTGAGG...AGGTTCTCTGCAGATGCAGTACCAGCAGAGCATGCAG|TATGGTTTGAAGTGGTGAACATGGATTTTTCTCGGCTTCACATGTACAGTCCTCCaCAGTGTGTGCCGGAGAACACGGGCTACAC	out-of-frame	GSLQMQYQQSMQ|yglkw*	.
TALL_VC094	ZNF43	AKT2	-/-	-/-	19:21851905	19:40268685	splice-site	splice-site	duplication	upstream	downstream	0	1	0	54	41	low	.	.	.	CTGTGATCTGCAAGTCCTGGGAGACGCACAGCTAAGATGCCCGGACcTCCTGGAAGCTGGcAAATG|CTGTGCTGACTCCTTAGTTGCTGAGAccAGCTTGTAAAAAGCAGCTCTGTTGATCCCAGC...AGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAG___AATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATACGCTGCCTGCAGTGGACCACAGTCATCGAGAGGACCTTCC	out-of-frame	MPGpPGSWqM|lc*	.
TALL_VC094	LRP8	OSBPL3	-/-	-/-	1:53326873	7:24849176	splice-site	splice-site	translocation	upstream	downstream	0	1	0	67	147	low	.	.	.	CGgGCGCTGCATCCCCTCTGTGTGGAGATGCGACGAGGACGATGACTGCTTAGACCACAGCGACGAGGACGACTGCC|GCCCTAGCACAAAACACAGATCTTAAAGAACGCTTACGCAGAATCCATGCCGAGTCTCTGCTCCTCGACTCCCCCGCTGTCGCCAAGTCGGGTGACAATCTGGCAGAG___GAAAACTCCAGAGATGAAAACCGAGCTCTAGTTCATCAGCTTTCTAATGAAAG	out-of-frame	gRCIPSVWRCDEDDDCLDHSDEDDC|rpstkhrs*	.
TALL_VC094	JAM3	NCAPD3	+/+	-/-	11:134140770	11:134153363	splice-site	splice-site	inversion	downstream	downstream	1	0	0	197	488	low	.	.	.	CCTGCTGCTGCTTTTCAGGG___GCTGCCTGATAGGGGCTGTAAATCTCAAATCCAGCAATCGAACCCCAGTGGTACAGGAATTTGAAA___GTGTGGAACTGTCTTGCATCATTACGGATTCGCAGACAAGTGACCCCAGGATCGAGTGGAAGAAAATTCAAGATGAACAAACCACATATGTGTTTTTTGACAACAAAATTCAGG|AGAGCATCAGTGATGTCACGTTTGGAG	in-frame	LLLLFRGCLIGAVNLKSSNRTPVVQEFESVELSCIITDSQTSDPRIEWKKIQDEQTTYVFFDNKIQ|eSISDVTFG	.
TALL_VC094	JAM3	NCAPD3	+/+	-/-	11:134140770	11:134194738	splice-site	splice-site	inversion	downstream	downstream	1	0	0	197	215	low	.	.	duplicates(1)	GGCGGCCACCGCGACTCCGGCTCTGCGCTCGGCTGCCTGACTTCTTCCTGCTGCTGCTTTTCAGGG___GCTGCCTGATAGGGGCcGTAAATCTCAAATCCAGCAATCGAACCCCAGTGGTACAGG...CATCATTACGGATTCGCAGACAAGTGACCCCAGGATCGAGTGGAAGAAAATTCAAGATGAACAAACCACATATGTGTTTTTTGACAACAAAATTCAGG|AAAGATGTGTCATGGCAATGCTGAGAAG	in-frame	IITDSQTSDPRIEWKKIQDEQTTYVFFDNKIQ|eRCVMAMLR	.
TALL_VC094	RP11-87G24.3	CDK12	-/-	+/+	17:76968884	17:39490557	splice-site	splice-site	inversion	upstream	upstream	0	1	0	50	162	low	.	.	.	GAGAGATCAGCCCTGCGGTCCTGCCGCGCACTCCACCGCCAGCCTCTCGGGAGTCAAGGGATCCGCCTTCAGGGT|TCCAAAAGAAACTCTTCCTTCAAAACCTGTGAAGAAAGAGAAGGAACAG...CCCTCCAGAGCTCCCTGGTGGAGATCTGTCTCCCCCAGACTCTCCAGAACCAAAGGCAATCACACCACCTCAGCAACCATATAAAAAGAGACCAAA___AATTTGTTGTCCTCGTTATGGAGAAAGA	.	.	.
TALL_VC094	UIMC1	DCAF8	-/-	-/-	5:176943335	1:160261358	splice-site	splice-site	translocation	upstream	downstream	0	1	0	218	203	low	.	.	.	CAAAGATTGAACGACATGCCATGTACTGCAATGGTCTGATGGAGGAAGATACAG|TCCTTCAGTGAATCTACAGACCTATTTTCTCAGGAGCTCAGCCTGGCCTTACTTCAGTGATAAAAGGAGGAAAG___GAAGCCTGTCTAGCAGTCCAGAGGAGATGTCTGGAGCTGAAGAGGGG	out-of-frame	KIERHAMYCNGLMEEDT|vlq*	.
TALL_VC094	RHOH	SPRY1	+/+	+/+	4:40191338	4:123401537	splice-site	splice-site	deletion	downstream	upstream	1	0	0	87	330	low	.	.	.	CTCAGAGCCTGCCGCACAATCTTTAAAAACTTTGTCAATGATTGCAAAATCTTTTTCCTTTTAGAGTGGATTTGATTTTAGGAGACAGCCATTCGGAGCTACATCCAGTGAATAAG|GATTTCAGATGCATGCCAGGTTTCCACTGATTGCCAGAACTCGAGATCACTACACATGG	.	.	.
TALL_VC094	SFI1	DRG1	+/+	+/+	22:31611840	22:31426615	splice-site	splice-site	duplication	downstream	upstream	0	1	0	237	334	low	.	.	.	CACAGGCAGAGCACCCAACTGCTGGCACAGAGACTCAGCCGGACCTGCTTCCGCCAGTGGAGACAACAG|AGTTTATATCCCCTGTATCTATGTGTTAAATAAGATTGACCAAATCTCCATTGAGG...GATGACCTATTGGAAAAGATCTGGGACTATCTGAAACTAGTGAGAAT___TTACACCAAACCCAAAGGCCAGTTACCAGATTACACATCCCCAGTGGTGCTTCCTTACTCCAGGACCACAGTGG	out-of-frame	HRQSTQLLAQRLSRTCFRQWRQQ|slyplylcvk*	.
TALL_VC095	RP11-143H17.1(19242),VBP1(21262)	VBP1	./+	+/+	X:155175745	X:155208874	intergenic	splice-site	deletion/read-through	downstream	upstream	8	58	0	92	126	high	.	.	duplicates(3),low_entropy(1),mismappers(2),mismatches(4)	CTCCTTTCGCTTGGTTCACATTCTCTCTTATCTGCCTCTATGTAAGACGTGCCATTTGCCTTCCACCATGATTGTGAGGCCTCCCCAGCCACGTGGAACT|GTTCCAACTCCATTGGGAGCTCCTTCTCTAATGGCACCTCAACCCATGATTCATACCCAGCAAGGCCTAAGGACCAGTAGTCCTTCCACTCCATCCCCAGAGCATCAG___GAAGATGTAGATTCCTTCATGAAACAGCCTGGGAATGAGACTGCAGATACAGTATTAAAGAAGCTGGATGAACAGTACCAGAAGTATAAGTTTATGGAACTCAACCTTGCTCAAAAGAAAAGAAG___GCTAAAAGGTCAGATTCCTGAAATTAAACAGACTTTGGAAATTCTAAAATACATGCAGAAGAAAAAA___GAGTCCACCAACTCAATGGAGACCAGATTCTTGCTGGCAGATAACCTGTATTGCAAAGCTTCAGTTCCTCCTACCGATAAAGTGTGTCTGTGGTTGGGG___GCTAATGTAATGCTTGAATATGATATTGATGAAGCTCAGGCATTGTTGGAAAAGAATTTATCGACTGCCACAAAGAATCTTGATTCCCTGGAGGAAGACCTTGACTTTCTTCGAGATCAATTTACTACCACAGAAGTCA___ATATGGCCAGGGTTTATAATTGGGATGTA	.	.	.
TALL_VC095	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	21	15	4	84	77	high	.	.	duplicates(1),low_entropy(2),mismappers(1),mismatches(6)	GTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCGGTACTTCTTGGCTGTTTGG...CTTAACCCCCCAATTTCATCACCCTCACCTCCCCCCTTTATTTTTCTCTCGCTCCTCTTCCCCGCCTGCTTCCCTCCGCCGCGCTCCCCCCTCCTTTTTTTTATTTGCATCTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...ATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCC	.	.	.
TALL_VC095	SET	NUP214	+/+	+/+	9:128694042	9:131159383	splice-site	splice-site	deletion	downstream	upstream	10	0	2	1074	193	high	.	.	duplicates(1)	GAGAGCTTCTTTACCTGGTTTACTGACCATTCTGATGCAGGTGCTGATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCCAAACCCATTACAGTACTACTTG___GTTCCCGATATGGATGATGAAGAAGGAGAAGGAGAAGAAGATGATGATGATGATGAAGAGGAGGAAGGATTAGAAGATATTGACGAAGAAGGGGATGAGGATGAAGGTGAAGAAGATGAAGATGATGATGAAGGGGAGGAAGGAGAG|GAAATTCGGCGCCTTCATCAGTATGTGAAATTTGCTGTCCAAGATGTGAATGATGTTCTAGACTTGGAGTGGGATCAGCATCTGGAACAAAAGAAAAAACAAAG___GCACCTGCTTGTGCCAGAGCGAGAGACACTGTTTAACAC	in-frame	ESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGE|EIRRLHQYVKFAVQDVNDVLDLEWDQHLEQKKKQRHLLVPERETLFN	.
TALL_VC095	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	9	14	3	42	37	medium	.	.	duplicates(2),low_entropy(1),mismappers(2),mismatches(2)	AGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGGTCCG...___...CCCTGCGGCGGACGGG...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTC...___...GTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAG	.	.	.
TALL_VC095	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	6	2	0	449	38	medium	.	.	low_entropy(1)	CGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAG	.	.	.
TALL_VC095	PCGF3	GAK	+/+	-/-	4:744688	4:898158	splice-site	splice-site	inversion	downstream	downstream	1	0	1	336	130	medium	.	.	.	GGGGGAGACCTGCTCTGCAAAACAGCACTTAGATTCCCATCGGAATG___GTGAAACCAAAGCAGACGACAGTTCAAACAAAGAGGCCGCGGAGGAGAAGCCGGAGGAGGACAACGACTACCACCGCAGCGACGAGCAG|GTTGAGAACTTGTTGCTTAGTAACCAAGGGACCATTAAGCTGTGTGACTTTGGC...CAGAGGCGAGCCCTGGTGGAGGAAGAGGTGAGCTGAGTGGGGCCTATGCTGGGGGAAGCTGGCCCTTCCCACATTCCACGCCCTGAGTGCGGAGTGCTGTTTTCCGCCGGGGTGCTTTGAGTCTCG	in-frame	GETCSAKQHLDSHRNGETKADDSSNKEAAEEKPEEDNDYHRSDEQ|VENLLLSNQGTIKLCDF	.
TALL_VC095	PCGF3	GAK	+/+	-/-	4:705970	4:904774	splice-site	splice-site	inversion	downstream	downstream	0	0	0	62	147	low	.	.	mismatches(1)	CCCCGtCGCGGCGCTCGGCTCGGCTCGGGCATTTCCGCCTCTTTGTgTTAAACTCCGGACGGGCTTTTTTCTCCTCCTCTTGGGGGGGACCCAGAGGGAGCGGCGCCCCCTCCCCCCTCCGGCGCGGACCCCGCGTGCGCCTTGCTCGCCCGCAGCCCCGAGACCGCAG|CTGGTGGAATTTTTGAAGAAAATGGAATCTCGAGGCCCCCTTTCGTG	.	.	.
TALL_VC095	EEF1A1P5	VAV2	+/+	-/+	9:133020427	9:133780531	exon	intron	deletion/5'-5'	downstream	upstream	0	0	8	633	2	low	.	.	duplicates(1),low_entropy(1),mismatches(14)	GCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGtCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAAtGTCAAGAAT...|...CCCACCAAGGAAAGCAG	.	.	.
TALL_VC095	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	4	0	178	253	low	.	.	duplicates(1)	CAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC095	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	12	253	low	.	.	read_through(3)	AACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAA	out-of-frame	LARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC095	EEF1A1P12	RGPD3	-/-	-/-	2:106697790	2:106462682	exon	intron	deletion/read-through	upstream	downstream	0	0	6	38	1	low	.	.	duplicates(1),low_entropy(1)	GCCGAGTGGAGACTGGTGTTCTCAAACCcGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTC...|...ATTCAGAACTGC	.	.	.
TALL_VC095	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	3	0	18	12	low	.	.	low_entropy(1),mismatches(3)	GTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGtCCTGAAtCCCATC...GCTGAACAGAGtCTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAaGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCC	out-of-frame	LNRvFRTGYQQLFCCkLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplsee	.
TALL_VC095	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	3	1	21	12	low	.	.	low_entropy(3)	CGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCC	.	.	.
TALL_VC095	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853406	18:48155187	exon	intron	deletion/read-through	downstream	upstream	0	0	5	43	0	low	.	.	mismatches(5)	...CGAGTAGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCAGGG|...CCTCTTTTGTCA	.	.	.
TALL_VC095	AC016629.3	CHMP2A	-/-	-/-	19:58595995	19:58554092	intron	CDS	deletion/read-through	upstream	downstream	0	5	0	1	399	low	.	.	duplicates(1),low_entropy(22),mismatches(7)	GGCATGTGCCTGTAGTCCtAGaTAcTtgaGAGGCTGAGGcaGGAaaATCGcTTGaACCCAGGAG|AAGAAAATCATTGCAGACATTAAGAAGATGGCCAAGCAAGGCCAGATG___GATGCTGTTCGCATCATGGCAAAAGACTTGGTGCGCACCCGGCGCTATGTGCGCAAGTTTGTATTGATGCGGGCCAACATCCAGGCTGTGTCCCTCAAGATCCAGACACTCAAGTCCAACAACTCGATGGCACAAGCCATGAAGGGTGTCACCAAGGCCATGGGCACCATGAACAGACAG___CTGAAGTTGCCCCAGATCCAGAAGATCATGATGGAGTTTGAGCGGCAGGCAGAGATCATGGATATGAAGGAGGAGATGATGAATGATGCCATTGATGATGCCATGGGTGATGAGGAAGATGAAGAGGAGAG___TGATGCTGTGGTGTCCCAGGTTCTGGATGAGCTGGGACTTAGCCTAACAGATGAGCTGTCG	.	.	.
TALL_VC095	RP5-857K21.11	C1orf159	+/+	-/+	1:634881	1:1082545	exon	3'UTR	deletion/5'-5'	downstream	upstream	0	0	5	457	46	low	.	.	low_entropy(3),mismatches(1)	CATCACCCCGCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGaGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACT...|...CAGAGCGGCA	.	.	.
TALL_VC095	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	1	168	13	low	.	.	mismappers(1)	ATGGCGGTCCTTCTCCTCCTCCACTCTGCAACACCCAACTCTTTGAGAGCTTTCTCTTGAGCATATTTGGCCCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCAC	out-of-frame	mavllllhsatpnslrafs*aylalphvcmtspfsg*DKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalswqqlwak*	.
TALL_VC095	CPA4	CPA5	+/+	+/+	7:130312122	7:130346393	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	168	13	low	.	.	.	ATGGCGGTCCTTCTCCTCCTCCACTCTGCAACACCCAACTCTTTGAGAGCTTTCTCTTGAGCATATTTGGCCCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAG___GACAAGGTGGCGAGG...CGGGCACTGAGTACCAAGTGGaTCCCACCTGCACCACTGTCT|GCTGGGCTTTCCAGCCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGG	out-of-frame	GTEYQVdPTCTTV|cwafqplgavls*	.
TALL_VC095	EEF1A1P6	CDCA7L(164170),RAPGEF5(7984)	-/-	./-	7:22510782	7:22110254	exon	intergenic	deletion	upstream	downstream	0	0	4	856	32	low	.	.	mismatches(5)	CTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGG...CGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTG...|...CAGAAATCAAG...ACTCCGAC	.	.	.
TALL_VC095	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	1	3	0	10	9	low	.	.	.	TACTGTAATTTCTTTCAGAAG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCTCTCTTCTTATGGCTCTGGACACACTGCTGAA	in-frame	YCNFFQKPVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEENITTENSCSLLMALDTLL	.
TALL_VC095	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	0	15	9	low	.	.	duplicates(1)	GCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCG	.	.	.
TALL_VC095	RP11-286B14.1	EEF1A1P11	+/.	+/.	1:95656016	1:96447118	intron	exon	deletion	downstream	upstream	0	0	3	0	33	low	.	.	mismappers(1),mismatches(5)	.	.	.	.
TALL_VC095	GYPE	RP13-578N3.3	-/-	+/-	4:143880411	4:143841053	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	0	2	1	113	6	low	.	.	mismappers(1)	TTCAGGAGCCAGCTCGTGATCTCAGGATGTATGGAAAAATAATCTTTGTATTACTATTGTCAG___GAATTGTGAGCATATCAGCATCAAGTACCACTGGTGTGGCAATGCACACTTCAACCTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATG|AAAGAGCATGCTCCCTGTGTTGATGCAGTCGCCCCCCTCCCGGGCTTTGTTCTACACATGGATGTAACCTGCCACACACTGGAAGACACTAAGTTTGGAACCCATGTAATGTTCAACTAGTCAAACAAGGGAAAATAGCATCAACCTTACCATTAATTTAAGTCACCTTTTGCAAAAGCTCCTCTtCCCCATATGTTTTTTAACCGACTAATGGAACTGTCAGCAAAAGTAGGAAACAG	out-of-frame	MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTN|eracslc*	.
TALL_VC095	EEF1A1P9	GSTCD	+/+	+/+	4:105485744	4:105734580	exon	intron	deletion/read-through	downstream	upstream	0	0	3	27	3	low	.	.	mismatches(1)	CAACGTTaCAACgGAAGTAAAATCTGTcGAAATGCACCATGAAGCTTTGAGTGAAGcTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAAtGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGC...|...CCATTCGTCTAATC	.	.	.
TALL_VC095	VCAN	EDIL3	+/.	-/.	5:83564660	5:84058450	intron	intron	deletion/5'-5'	downstream	upstream	0	0	3	1	0	low	.	.	.	.	.	.	.
TALL_VC095	EEF1A1P6	DNAH11	-/-	+/-	7:22510870	7:21763522	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	742	1	low	.	.	low_entropy(1),mismatches(7)	CTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCG...AAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAA...|...ACAGCCTCACCAACA	.	.	.
TALL_VC095	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511651	7:23323464	exon	intron	deletion	downstream	upstream	0	0	3	1529	3	low	.	.	mismatches(7)	.	.	.	.
TALL_VC095	SH3RF3	RGPD5	+/+	+/+	2:109462464	2:109836203	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	1	218	low	.	.	low_entropy(1),mismappers(1),mismatches(5)	ATGATAATCCTCT...|...AAGtCTtAGGACAGCGATGACATCCATTTTGAACCAGTAGTTCAAATGCCTGAAAAAGTAGAACTTGTAACAGGAGAAGAAGGTGAAAAAGTTCTGTATTCACAGGGGGTAAAACTATTTAGAT	.	.	.
TALL_VC095	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	0	72	4	low	.	.	mismappers(1)	CTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGG	out-of-frame	WQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL_VC095	GOLGA2P5	ANKS1B	-/-	-/-	12:100156673	12:99494189	exon	intron	deletion	upstream	downstream	0	0	2	68	1	low	.	.	mismappers(1),mismatches(1)	GTCTGCACAAGGAGAGGCGGGGAAGCATTCTCCCTGTGACAACCCCACTGAGCAGCAGATCATGCAACTGCTTCATGAGATGCAGAACCTCCAGGAGCACCCAGGCTTGGGCAGCAGCCCTTGCAT...|...CAAAATCAAAAAGG	.	.	.
TALL_VC095	TSHR	CEP128	+/-	-/-	14:80976280	14:80939540	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	1	0	1	5	31	low	.	.	mismappers(2),mismatches(6)	TGAACTGATACAGTTGGTACTGGAATTGGTCTGAGAAAGCAGGAG___ACAGACCAACCGCTGCAACAGGGGTCAGACTACTCCCTAAGTTACCTCTTTCAAGCTTCTCCTCAGGAAGACAGGCCCACTGGAATCCTGGATAACCTGTTCCCCAAAG|GTGGTTTGGGGAAAGTGTAGGGGCAACCAAAGATCATCtGCTTGACTAGGCCCTT	.	.	.
TALL_VC095	SMARCA4	ZNF833P	+/+	+/+	19:11058756	19:11665939	intron	intron	deletion	downstream	upstream	0	0	2	2	720	low	.	.	low_entropy(1),mismappers(1)	GCGGGGTCCTG...|...AAAACATGTCTTCTTTGTAGCAGCTAGGCCCTGCCACCACTGTGCTTGGCTGAGTTCACAAATCTgTTGTAACCTGTAGCTTCCCTGTCACTTCTCTGGCTCTCCTCTCCTGCTAAGCTTT	.	.	.
TALL_VC095	ADK	KAT6B	+/+	+/+	10:74660271	10:74872789	intron	intron	deletion/read-through	downstream	upstream	0	0	2	0	8	low	.	.	low_entropy(2),mismappers(2),mismatches(5)	TGGGGCTACAG...|...ACAGGCATGAGCCACTGTACCTGTCTTAGTTTATGTTTTAAAGTCATCGAGAGACATGAAAACTAAATGGTCCTAGGTTGGAGGAAGAAAACTTACTGTAAAGGACAGTATTGGGGAAAACTGG	.	.	.
TALL_VC095	FASTKD1	TLK1	-/-	-/-	2:169573667	2:171007061	splice-site	splice-site	duplication	upstream	downstream	1	0	0	52	119	low	.	.	.	GGTTGGGCGAGACATCCGAGCCTGTTTCGTTCCGTGTTGGGACCAGGAATAACCCTGACTTCTGAGCTTTCATAACCCCAGGATCCTCCAGAAAATTTGCGGCGCGCTGAGGGAAAACCTTGCTGGC|TTTTGACCTTTATGAACAAAGATATGCTGC	.	.	.
TALL_VC095	STAU1	MARK3	-/-	+/+	20:49135833	14:103491777	splice-site	splice-site	translocation	upstream	upstream	1	0	0	91	312	low	.	.	.	AATTTAATGGCAAAGGAAAGACAAGACAGGCTGCGAAACACGATGCTGCTGCCAAAGCGTTGAGGATCCTGCAGAATGAGCCCCTGCCAGAGAGGCTGGAG___GTGAATGGAAGAGAATCCGAAGAAGAAAATCTCAATAAATCTGAAATAAGTCAAGTGTTTGAGATTGCACTTAAACGGAACTTGCCTGTGAATTTCGAG|CACTATTCCTGATCAGAG	out-of-frame	FNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFE|hys*	.
TALL_VC095	PDE7A	PCMTD1	-/-	-/-	8:65841371	8:51861246	splice-site	splice-site	deletion	upstream	downstream	1	0	0	44	120	low	.	.	duplicates(1)	AATGGAAGTGTGTTACCAGCTGCCGGTACTGCCCCTGGACAGGCCGGTCCCCCAGCACGTCCTCAGCCGCCGAGGAGCCATCAGCTTCAGCTCCAGCTCCGCTCTCTTCGGCTGCCCCAATCCCCGGCAGCTCTCTCAG|GATTAATTTATTTTTGGAAATC	out-of-frame	MEVCYQLPVLPLDRPVPQHVLSRRGAISFSSSSALFGCPNPRQLSQ|d*	.
TALL_VC095	PSPC1	MPHOSPH8	-/-	+/+	13:19759323	13:19658995	splice-site	splice-site	inversion	upstream	upstream	0	1	0	231	176	low	.	.	.	GGAACCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTGATGCAGAAAACTCAACAATATCATAA|ATGGCAGGCAGCAGATTCTGAGTTTGGGCATGGACCTGCAGTTGGAATGGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAAGATGAGAATTTTGCTGCAACAGATGCAATTCCAAGTA___ATGTGTTAAGGGATGCTGTGAAAAAT	out-of-frame	EPMEQFDDEDGLPEKLMQKTQQYHk|wqaadsefghgpavgmdevgrfpkap*	.
TALL_VC096	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	49	43	14	260	221	high	.	.	duplicates(8),low_entropy(14),mismappers(5),mismatches(24)	TCtCATttTTGCTGGGGGG...CACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGCGGGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCG	.	.	.
TALL_VC096	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	30	60	8	212	167	high	.	.	duplicates(8),low_entropy(3),mismappers(1),mismatches(14)	CTGgTGCGTCAGGG...CGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAG	.	.	.
TALL_VC096	CTCF	SLC7A6	+/+	+/+	16:67562724	16:68274691	splice-site	splice-site	deletion	downstream	upstream	15	53	1	190	347	high	.	.	duplicates(6),low_entropy(9),mismappers(2),mismatches(2)	GCGGCGGCGGTGGCCGGTGCGGACGCGCGGAGCTCGCCGGAGACGCCGGGTGGCCGGAGCCGTGGAGCGGCGGCGGAGCGGGCGCCGCGGGGGGTGTGGCGCGGAG|GCCACAGCAAACACAGGTGTGCAGGAACCGTTTGTCATGGAAGCCAGGGAGCCTGGGAGGCCCACACCCACCTACCATCTTGTCCCTAACACCAGCCAGTCCCAGGTGGAAGAAGATGTCAGCTCGCCACCTCAAAGGTCCTCCGAAACTATGCAGCTGAAGAAGGAGATCTCCCTGCTGAATGGGGTCAGCCTGGTGGTGGGCAACATGATCGGCTCAGGGATCTTTGTCTCACCCAAGGGTGTGCTGGTACACACTGCCTCCTATGGGATGTCACTGATTGTGTGGGCCATTGGTGGGCTCTTCTCTGTTGTGGGTGCCCTTTGTTATGCAGAGCTGGGGACCACCATCACCAAGTCGG	.	.	.
TALL_VC096	CTCF	SLC7A6	+/+	+/+	16:67562724	16:68273818	splice-site	splice-site	deletion	downstream	upstream	1	18	2	190	110	high	.	.	duplicates(1),low_entropy(4),mismappers(1)	CCGGTGCGGACGCGCGGAGCTCGCCGGAGACGCCGGGTGGCCGGAGCCGTGGAGCGGCGGCGGAGCGGGCGCCGCGGGGGGTGTGGCGCGGAG|GCAGTGGCGTGATCTTGGCTCACTGCAACCTCCGACTCCCTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTGGGGATTACAG___GCCACAGCAAACACAGGTGTGCAGGAACCGTTTGTCATGGAAGCCAGGGAGCCTGGGAGGCCCACACCCACCTACCATCTTGTCCCTAACACCAGCCAGTCCCAGGTGGAAGAAGATGTCAGCTCGCCACCTCAAAGGTCCTCCGAAACTATGCAGCTGAAGAAGGAGATCTCCC...GGGATGTCACTGATTGTGTGGGCCATTGGTGGGCTCTTCTCTGTTGTGGGTGCCCTTTGTTATGCAGAGCTGGGGACCACCATCACCAAGTCGGGAGCCAGCTACGCTTATATTCT	.	.	.
TALL_VC096	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	17	26	3	87	87	high	.	.	duplicates(3),low_entropy(7),mismatches(7)	CGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTCTGGGCCCGAGTGGGCTGAATCCCATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGACGGTGGGACAGACGGGGATGCGTGCACAcaTGTG	out-of-frame	AVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL_VC096	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482895	17:4483875	intron	intron	duplication	upstream	downstream	4	13	9	152	203	high	.	.	.	.	.	.	.
TALL_VC096	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	11	8	0	59	51	high	.	.	low_entropy(1),mismatches(1)	GCGACGTGATTTACTTAGATCAATCAAACGTGTGTGGTGCGGGCCTCACTTCCAGGTGGAAGCAATAAAAGTAGGTCTGCCCTCCCCAAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAGtCA	.	.	.
TALL_VC096	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	6	8	0	176	37	high	.	.	duplicates(1),low_entropy(1),mismappers(9)	GAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGT?GGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTG...GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCC	out-of-frame	NYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC096	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	11	0	148	16	high	.	.	.	CTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGG...CATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCC	.	.	.
TALL_VC096	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	3	8	0	34	49	high	.	.	duplicates(1),low_entropy(10),mismappers(1)	CCTCAGGCTCCGCGCTCCTCCTCCCCTCCTCCAGATGGGACTGGCTCTCCTCTTTGCAAAGCCAGGCTCGCGGGGAGACGTGGTGAGCAGTAGCCAGCAGCTGGTGTGCCGTGGACGCCGCTGACC...GGTGTCCACATGAGTGCCTCTCCCAGCAGATCCAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAG	.	.	.
TALL_VC096	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	8	0	49	39	high	.	.	duplicates(1),low_entropy(4)	AGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGC	.	.	.
TALL_VC096	SPNS3	RP13-580F15.2	+/.	-/.	17:4482895	17:4483875	intron	intron	duplication/3'-3'	upstream	downstream	4	13	9	152	203	medium	.	.	.	.	.	.	.
TALL_VC096	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	13	9	1	46	31	medium	.	.	duplicates(2),mismappers(1),mismatches(2)	GAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTG?TTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAGTCCATCCTGGCTAACACgGTGAAAACCCgTCTCTACTAAAAATACAAAAGCAAAATTAGCTGGGCGTGGTGGCAG	.	.	.
TALL_VC096	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	10	2	0	1087	85	medium	.	.	duplicates(1),low_entropy(6),mismappers(7),mismatches(3)	TGAATTACCAGATCTCCGTCAAGTGCAGTAACCAGTTCAAGTTGGAAGTGTGTCTTTTGAATGCAGAAAACAAAGTC___...CAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGAAACTAGCCTGGCCAACGTGGC	.	.	.
TALL_VC096	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	7	0	134	392	medium	.	.	.	CGGGTGGTTCCGGTCCGGCTTTTCAGGCCGGACGGGTGCCTGCCCCTCAGGTGCGAGTTTGTGCGGTAAAGAACACACCCCGGAGATGTGGACACGGCCGCCCCAGGAGGGTCCTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAG	out-of-frame	rvvpvrlfrpdgclplrcefvr*rthpgdvdtaapggslfgGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC096	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	21	392	low	.	.	read_through(10)	TTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAAC...AATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC096	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	3	0	20	221	medium	.	.	duplicates(1),mismappers(1),mismatches(2)	GGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAG	.	.	.
TALL_VC096	ACOT11	AC000068.5	+/.	+/.	1:54564371	22:19448420	intron	intron	translocation	downstream	upstream	3	2	0	10	17	medium	.	.	.	.	.	.	.
TALL_VC096	CPSF6	KBTBD11	+/+	+/+	12:69262562	8:2006545	splice-site	3'UTR	translocation	downstream	upstream	2	3	0	997	645	medium	.	.	duplicates(1)	ATCAAGAGAGAGGGACCATAGTAGATCACGAGAAAAGAGTCGACGTCATAAATCCCGTAGTAGAGACCGTCATGACGATTATTACAGAGAGAGAAGCAGAGAACGAGAGAGGCACCGGGATCGTGACCGAGACCGTGACCGAGAGCGTGACCGAGAGCGCGAATATCGTCATCGTTAGAAG|TGGCCACATCATTTCCACGTTTTCCACATCCGGGAGGAAGCCTGGACTGTGCAGCCTTCGGGCACCCGGCACAGACACTGTGCTGGCAGGAGCTTCAGACACGCCAAGTGGATGGATTTGGATTGAACGCATATGAAACAGGAGACGGGTTC	out-of-frame	SRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR*k|wphhfhvfhireeawtvqpsgtrhrhcagrsfrhakwmdld*	.
TALL_VC096	RP11-680G10.1(40371),AC092377.1(41603)	GSE1	./+	+/+	16:85399820	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	1	18	319	medium	.	.	mismatches(2)	GGGGTGCACATTCTGCTGAGTTtGGGGGAAGAATGGATTAGGAATCTGTGCTTCGCTCCTAGAAGAGCCCCTGGCAGGTG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGG	.	.	.
TALL_VC096	RP11-163E9.2	RP11-745H7.1(197998),AC003088.1(17861)	+/+	./+	7:102376322	7:110414378	splice-site	intergenic	deletion	downstream	upstream	1	0	2	499	222	medium	.	.	.	TGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAACTGGACCCTGATGAGAAGATAGCATACGGGGATGTGATGTTGGAGAACTACAGCCATCTAGTTTCTGTGG___GGTATGATTATCACCAAGCCAAACATCATCATGGAGTGGAGGTGA...GTGAATTTCCATGTCAACATAGTCCAG|ATTATCAGATGAGGATGTGGAATCAAAGAAGTTTGAATTGTTATAAATGTATCTGCTCTCAGGAGGCAGATGAAGGGAAATTGTATAtG___GTACATTTGGTTTCTCCTTGATTACTAGCAGCTGCCCAGGACATTAACATGAAGTCTCCG	.	.	.
TALL_VC096	PRKRIP1	RP11-745H7.1(197998),AC003088.1(17861)	+/+	./+	7:102376322	7:110414378	splice-site	intergenic	deletion	downstream	upstream	1	0	2	499	222	medium	.	.	.	TGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAACTGGACCCTGATGAGAAGATAGCATACGGGGATGTGATGTTGGAGAACTACAGCCATCTAGTTTCTGTGG___GGTATGATTATCACCAAGCCAAACATCATCATGGAGTGGAGGTGA...GTGAATTTCCATGTCAACATAGTCCAG|ATTATCAGATGAGGATGTGGAATCAAAGAAGTTTGAATTGTTATAAATGTATCTGCTCTCAGGAGGCAGATGAAGGGAAATTGTATAtG___GTACATTTGGTTTCTCCTTGATTACTAGCAGCTGCCCAGGACATTAACATGAAGTCTCCG	out-of-frame	EFPCQHSP|dyqmrmwnqrslncykcicsqeadegklymvhlvsp*	.
TALL_VC096	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510563	7:22348105	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	11	2413	16	low	.	.	low_entropy(5),mismappers(1),mismatches(24)	CTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAA...|...CCCTGGTTAGAAA	.	.	.
TALL_VC096	ANKRD36	RP11-734K23.9	+/+	+/+	2:97245640	2:97284044	CDS	splice-site	deletion/read-through	downstream	upstream	1	4	2	598	666	low	.	.	.	CAGAAATGCAATCATACCATTGTAGACTGAATGCTGgTCGATGTGATCATGATCAAAGTCACTCATCAAAAAGAGACCAAGAGCTTGCTTTCCAGGGCACAGTAGATAAATGTCGTCACTTACAGGAAAATTTGAATTCTCATGTTCTGATTCTTTCTCTGCAACTTTCTAAAGCTGAGA|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAG...GGCGTGTGTGGTAACACATAGGAACTGAGGGAGAGGACATTTCAAGA---TGGGGATGCCATACAACAGGACTATGTGATGaTTTTTGGCTGTGTCCATAGGAAGTCACAACAGGCAAGGGAAAGAAAC	out-of-frame	EMQSYHCRLNAgRCDHDQSHSSKRDQELAFQGTVDKCRHLQENLNSHVLILSLQLSKAE|sdgis*	.
TALL_VC096	ANKRD36	RP11-734K23.9	+/+	+/+	2:97224879	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	126	1039	low	.	.	.	GGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAG...GGCTAAAAGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTTGGACATCTGTAGTATTCCTGGTCTCGAATCATCCTGATATTCTTCATTTTGTTATTCACATTGGACTAGG___AGATAGAATCTCAC	out-of-frame	GEQKRLEEYENNQPQ|flhrhypkqcfttvadrpenfhlkq	.
TALL_VC096	AC093668.2	HSPC047	+/+	-/+	7:102480181	7:102672910	3'UTR	CDS	deletion/read-through/5'-5'	downstream	upstream	7	0	0	59	39	low	.	.	duplicates(4),mismappers(7),mismatches(1)	CTTTATTCCAATATTATAATAATCCTCGCTCTACAATgATAACCTAGGAAACACCAGGCCATACAGAGATAGGAGCTGAGGGGACAgTGAGGAGTGACCAGAAGACAAGAGTGCGAGCTTTCTGTTATGCCCGGACAGGGCCACCAGAGGGCTCCTTGGTCTAGCGGTAACGCCAGCATCTGGGAAGACAC|CTGTTGCCAAGCCCACCGTGGTCTAGCGGTAGCGTTAGTGTCAAGGAAAAACACCCGCTACTTAGCAGACCGGGAAAGGGAGTCTCCCTTTCCCCGGGGGAGTTTAGAGAAGACTCT...GAGGTGGTGATCAGGGGGACCCATGCTTCTGCTCAGGGGGTTGGCAGAAGCCAGCAAGGCTTGGGGTTTCCCTGTTTGGAGCGCTCCAAGTTGAGAGTGCAGAGGAGTGTGAGATGCGTGTGAAAATGCAAACTTGGCTCTCCCTGGCTGGAGGCTGGCATTGGGTGAGTCTCTG	.	.	.
TALL_VC096	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	2	5	0	120	19	low	.	.	duplicates(1)	TGGAGAATGGCTTCAAGGCCCTGAGAAGCACCATTGATGCCGTGAGTGGGTGGAGATGAGGGGCTGGGGGCCTGGCTCACTCTCCCTGCCCCGCCCCACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAACTGTGAGACATGCACTTGCTACGAAACAGAAATTTCATGTTGCACCCTGTAAGTCTCAAGCCAGTGCTGGCCAAG	.	.	.
TALL_VC096	EEF1A1P6	DNAH11	-/-	+/-	7:22510723	7:21877944	exon	intron	deletion/5'-5'	upstream	downstream	0	0	7	734	3	low	.	.	low_entropy(6),mismatches(27)	CCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTT...|...GGGAGCCAAAAG	.	.	.
TALL_VC096	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	2	2	26	5	low	.	.	mismatches(3)	GGAACTTTTGATGGAGTTCTTATGGATCTTGGGTGTTCCTCCATGCAACTTGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCT	out-of-frame	GTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL_VC096	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	1	3	2	68	14	low	.	.	.	GGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTGCAGCTACTGAAAGTTTAAAGTTTAAGTAAAAAAATGAATAGCTTTCTTCAG___CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTG	out-of-frame	GELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|wlyassssscs*	.
TALL_VC096	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	2	68	81	low	.	.	.	GGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTT...TTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAG	out-of-frame	FATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC096	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	116	81	low	.	.	.	GGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAG	in-frame	AVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQ	.
TALL_VC096	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	183	118	low	.	.	duplicates(2),low_entropy(2)	GTGGCTCACAGCATTAAGATATTTAATCATCTGACATTACATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAG	.	.	.
TALL_VC096	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511976	7:23385578	exon	intron	deletion	downstream	upstream	0	0	6	105	2	low	.	.	duplicates(1),low_entropy(3),mismatches(9)	.	.	.	.
TALL_VC096	MPLKIP	CDK13	-/-	+/-	7:40134229	7:40094527	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	5	0	1	375	291	low	.	.	.	CCGCCCTCCCCTCGAGACGGGTACGGGAGTCCGCcCCACACGCCGCCGTACGGGCCCCGGTCTcGGCCGTACGGGAGCAGTCACTCTCCGCGACACGGCGGCAGCTTCCCGGGGGGCCGGTTCGGGTCTCCGTCCCCTGGCGGCTACCCTGGCTCCTACTCCAGGTCCCCCGCGGGGTCCCAGCAGCAATTCGGCTACTCCCCAGGGCAGCAGCAGACCCACCCCCAG|TGGTGGAGCAGAACTGCTTCCTAGACCATCATTGCTAACATAAGGAGCAGAAGAGAAAGAAGAGGATCCAAAGTTGTCCTTGTAGTCTGAAGTGGACAC___TAGCACATCTTTC	out-of-frame	PPSPRDGYGSPpHTPPYGPRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQ|wwsrtas*	.
TALL_VC096	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	0	108	13	low	.	.	mismatches(1)	TTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACgCTCCTGGTCTTCAGCTTTATCCTGG	out-of-frame	llds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtggrswssals	.
TALL_VC096	PTGER4(3028),TTC33(17712)	TTC33	./.	-/.	5:40696763	5:40740484	intergenic	intron	deletion/read-through	downstream	upstream	1	4	0	23	13	low	.	.	mismatches(1)	.	.	.	.
TALL_VC096	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	5	0	0	57	244	low	.	.	low_entropy(1),mismappers(1)	GCCAAGGTTAGGCCCATGGTCATGAGATGCTCCCAGAGACCACCTCAGGATGGGGGCTTCCTTCCTGACTTCAGCACAGCAGCACCTGTCACCACTCACCTCAAGAGGTGGCTCCCGAGCCTCCTGGGAGGGAAGGGGCCATGGCAGTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCAGCCTGCTCTTCCTGGTGGCCCATCTCGCCCTCCAGATCTG	.	.	.
TALL_VC096	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	2	2	0	120	60	low	.	.	.	TGACTTGTATTCTCCCCGTCCAACAATGGAATCTGCCATTTCTCCAAGGAGCCCTGATTCCTTTTATTTGAGCGTG___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGG	.	.	.
TALL_VC096	MDM4	SCARNA20(18387),NFASC(82158)	+/+	./+	1:204555604	1:204746493	3'UTR	intergenic	deletion/read-through	downstream	upstream	4	0	0	897	0	low	.	.	duplicates(5),low_entropy(2),mismappers(9),mismatches(25)	TTTTTTTAGACGGAGTCTCTCTCTGTCGCCCCGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTCTCCTGCCTCgGCCTCCCTgGTgGCTGGGAC...ACCGTCTTgGCCgGGATGGTCTTGATCTCCTGACCTCGTGATCTGCCCACCTCgGCCTCCCAAAGTgCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCGGAACTCTCCATTTCTTAAGGTAAAGAGGGTCAAGGATACCTAAAAAGGGTCAAATAATGCTAGAAGAGCAATTCCTCTTTCAGAGCAGTTGCTGTAATTTGGCAAATGCTTTATCGAAGATTGATATTAGGCTAGGGGCGGTGGCTTACGC|CTGTGGTCCCGGC??CTCAGGAGGCTG...GCTCGCCG...CCCtGTCTCTACTAAgAgTACAgAggTTggCCgGtCgTGGTGGCgtGCGCCTGTAgTCCCgGCTgCTTGGcAGGtTGAGaCAGGAGAATCGCTTGAgcCtGGGAGGTGGAGGTTGCGGTGAG	.	.	.
TALL_VC096	FAM157B	FO082796.1	+/+	+/+	9:138251596	9:138294343	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	9	2	low	.	.	.	CCTGCACTCCGCAGCTTGTGCTGCCCGTCTCGAATGACTGGAGTTTCCTGCTTCTGTCACTACACCTCCCACCCTCTCCATCACCTGCTCTGCTCTTACAAGGATCCGA___AGAAATGGAATCATCGTATCGCTGATCTACGTAAACAAACTGAAGAATTGTCTGAAAGAAAATATG___ACATGAACTTATGAATTCAACAGGTGAAGATTTACAACTTGATAAATCAACTTTGTCAG|CTGATCCATATGAATTCCTCTTATTAAGAAAAATA	.	.	.
TALL_VC096	DOPEY2	MORC3	+/+	+/+	21:36293801	21:36333646	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	0	2	68	104	low	.	.	mismappers(1),mismatches(1)	GTTTAATCCATGTATTGGTACTTTACTGAAAACCAGGTTATATTCTAAAGAAGAAAGAAGGCAGGATAGTGCTTTTGAACAAGCCTATTTCCATTTTGAAAGTAGATTTCAGGCTAGGTGCGGTGG...ACTTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATG|CTTTGCCCGAAGTTTTTACATACAAATTCTACTAGTCACACCTGGCCATTCAGTGCAGTTGCTGAATTAATAG___ATAATGCTTATGAT	.	.	.
TALL_VC096	SPSB4	SPSB4(20462),PXYLP1(59653)	+/+	./+	3:141066798	3:141169073	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	1	99	7	low	.	.	duplicates(1)	ATGAGGGCACACTCAGCTTCATCGTGGATGGCCAGTACCTGGGCGTGGCCTTCCGAGGTCTCAAGGGCAAGAAGCTGTACCCGGTGGTGAGTGCCGTGTGGGGCCACTGTGAAGTCACCATGCGCTACATCAACGGCCTTGACC|ATTTCATCAGTGAAGCCAACTGTGCCTGAATTTAATACCTGTTATGGGGATCTATGATCAGTAATCTTTGATGTTACTATTGTTTTGG	out-of-frame	EGTLSFIVDGQYLGVAFRGLKGKKLYPVVSAVWGHCEVTMRYINGLD|hfiseanca*	.
TALL_VC096	AKAP13	AGBL1	+/+	+/+	15:85727099	15:86234990	CDS	intron	deletion	downstream	upstream	0	0	3	134	0	low	.	.	low_entropy(1),mismappers(2),mismatches(3)	CAGGAAGGTTGAAAG___AGGTTCAAGCAGTcCTTCTCACTGACATTTTAGTTTTCCTTCAAGAAAAAGACCAGAAGTACATCTTTGCATCATTG___GACCAGAAGTCAACAGTGATCTCTTTAAAGAAGC...|...AAGCGCCAGA	.	.	.
TALL_VC096	ARHGAP26	CTB-57H20.1	+/.	+/.	5:143182791	5:143755464	intron	intron	deletion	downstream	upstream	0	0	3	18	0	low	.	.	mismappers(1),mismatches(2)	.	.	.	.
TALL_VC096	PHC3	MECOM	-/-	-/-	3:170089703	3:169584973	3'UTR	intron	deletion	upstream	downstream	0	0	3	317	0	low	.	.	mismappers(2),mismatches(3)	CTTGCCTCAGCCTTCCAAGTAGCTGGAATTACAGGTGCCCGCCGCCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGCTTCACCATGTTGGCCAGGCTAGTCTCGAACTCTTGACC...|...CGTAAGATCC	.	.	.
TALL_VC096	GYPE	RP13-578N3.3	-/-	+/-	4:143880411	4:143841053	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	2	0	0	35	6	low	.	.	mismappers(3)	GCACATGAAGACTACAGATATTATGAATACAACCATGATCTCTTCCAAAGAATGCCACAGAATCAGGGGAGGCATGCTTCAG___aAATTGTGAGCATATCAGCATCAAGTACCACTGGTGTGGCAATGCACACTTCAACCTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATG|AAAGAGCATGCTCCCTGTGTTGATGCAGTCGCCCCCCTCCCGG	out-of-frame	kL*AYQHQVPLVWQCTLQPLLQSQRVTSHHRQM|kehapcvdavaplp	.
TALL_VC096	IL6ST	DDX4	-/-	+/-	5:55937940	5:55807003	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	20	2	low	.	.	mismappers(1)	GAGAAATAGAAATCAATTATTAAAGATGTCTTTTTTCTACCCATTTAACTAGTTAAAACCATGACATGTAAATGTAGAAGTAGAATAATCATAGAATTCCCTAAAATATTTCTGTTTACT...|...GCACCCAGATTCATAAAGCAAGTCCTTAGAGACCTACAAAGAGACTTAGACTCcCACACAATAATAATGGGAtACTTTAACACCCCACTGTCAAtATTAGACAGATC	.	.	.
TALL_VC096	RPS26P11(56350),RGAG4(25868)	NHSL2	./+	+/+	X:72101242	X:72138441	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	9	8	low	.	.	low_entropy(2)	GAAGAACCCACATTGTGGCTTACTCAACTGTGAGATCTTAACTCTGTGGCCCCAGAGCCACTGTGCTCCTGGGCGGCAGTGGTGACAGCCATGGCGGCACAGCTTAGAGCCTGGAATG|GTCACAGCAACAGCCCAGCAGGCAGTGTGGCCCACTCTACCACCTCCGACATCAGGCCCAGTCACTCAGTTCCAGAAGGGGTTCATGGAAGAGTTGCAGTTGGTCAGGATGCTCGGTTCCCAAGTCTCACCTCGCCAGTACTGAGAACTCCTTCCAGTGAGCCGGACGAACCTCACCAGGCACGGAGTGGCCCAAACCCTCCTGGCATGGAGAGCATGGGAAT...GGAAGGGAGATGCTTTTACCTACATGACTCCAAGTGCCACCAGCCAGAGCAATCAAGTCAATGAAAATGGGAAAAATCCTTCCTGTGGGAATTCTTGGGTCTCTCTAAACAAAGTCCCACCTCTGG	.	.	.
TALL_VC096	APBB1	LA16c-431H6.6	-/-	+/+	11:6410627	16:1685439	splice-site	splice-site	translocation	upstream	upstream	1	0	0	35	287	low	.	.	.	CGGGAACACAGCAAGAGTGCCAGCCTCCTGTTTGGCATGCGGAACAGTGCAGCCAGTGATGAGGACTCAAGCTGGGCTACCTTATCCCAGGGCAGCCCCTCCTATGGCTCCCCAGAGGACACAG|GGCCATGAAGCCCCCAGGAGGAGAATCGAGCAATCTTTTTGGAAGTCCAGAAGAAGCTACTCCTTCCAGCAGGCC	out-of-frame	REHSKSASLLFGMRNSAASDEDSSWATLSQGSPSYGSPEDT|gp*	.
TALL_VC096	PWP1	HDAC2	+/+	-/-	12:107710510	6:113944410	splice-site	splice-site	translocation	downstream	downstream	0	1	0	509	1142	low	.	.	.	GGGCTTCGGGTCTGGGATATAAGCACAGTCTCTTCAG|ACAGCGTTTGTTTGAAAATTTGCGCATGTTACCTCATGCACCTGGTGTCCAGATGCAAGCTATTCCAGAAGATGCTGTTCATGAAGACAGTGGAGATGAAGATGGAGAAGATCCAGACAAGAGAATTTCTA___TTCGAG	out-of-frame	GLRVWDISTVSS|dsvclkicacylmhlvsrcklfqkmlfmktvemkmekiqtreflf	.
TALL_VC096	BRWD1	DHX29	-/-	-/-	21:39298432	5:55281515	splice-site	splice-site	translocation	upstream	downstream	1	0	0	159	122	low	.	.	.	GTCCAATAAGCATGTGGCTCCTGATCATCTTTTGCAAATCTGCCAGCGCATCGGTCCTATGTTGGATAAAGAAATTCCACCCAGTATTTCAAGAGTCACTTCTTTACTTGGTGCAGGAAGGCAGTCTTTGCTACGTACAGCAAAAG|AATTCCTTGTGTGGATATCAGATCCGGATGGAATCTCGAGCTTG	out-of-frame	SNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAK|eflvwisdpdgiss	.
TALL_VC096	LINC01278	OXSR1	-/-	+/+	X:63560832	3:38183003	splice-site	splice-site	translocation	upstream	upstream	0	1	0	187	126	low	.	.	.	CAGACCGTGGCGAAGTGGAGAGTGACATGCAGTTGGATGGCGGTGACTGCGTG|GGAGTGGAGCAACTGCTGTAGTCCAAGCAGCTTATTGTGCCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGAAATGTCAAACTAGCATGGATGAACTCCTGGTATGCACATCTTATACTTCTGAA	.	.	.
TALL_VC096	RCN2	ST20	+/+	-/-	15:76932466	15:79899125	splice-site	splice-site	inversion	downstream	downstream	0	1	0	355	197	low	.	.	.	AAAAAAGACTGCAGGCGATCATAAAGAAAATCGACTTGGACTCAGATGGCTTTCTCACTGAAA|GAAAATGGCTTTGTAAAGAAGCTTGAGCCTAAATCTGGCTGGATGACTTTTCTAGAAGTTACAGGAAAGATCTGTGAAATGCTCTTCTGTCCTGAAGCAATACTGTTGACCAGAAAGGACACTCCATATTGTGAAACCGGCCTAATTTTTCTGACTCTTACGAAAACGATTGCCA	out-of-frame	KRLQAIIKKIDLDSDGFLTE|rkwlckea*	.
TALL_VC096	DENR	SPG7	+/+	+/+	12:122762929	16:89524006	splice-site	splice-site	translocation	downstream	upstream	1	0	0	488	304	low	.	.	duplicates(2)	GCCGATTACCCACTTCGAGTCCTTTATTGTGGAG___TCTGTTCATTACCAACAGAG___TACTGTGAATATATGCCTGATGTTGCTAAATGTAGACAATGGTTAGAGAAGAATTTTCCAAATGAATTTGCAAAACTTACTGTAG|AGGAGAGGAGACGCCGTGAGCGGGACGACCAGATGTACCGAGAGCGGCTGCGCACCTTGCTG	in-frame	ADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTV|eERRRRERDDQMYRERLRTL	.
TALL_VC096	TRAM1	P2RX5	-/-	-/-	8:70594506	17:3673877	splice-site	splice-site	translocation	upstream	downstream	0	1	0	649	1142	low	.	.	.	GCTTACTGGCTTCATGCTTTTCCTGAACTCTACTTCCAGAAAACCAAAAAA|GAGCACGTGAATTGCCTCTGCTTACGTTCAGGCCCTGTCCTAAACCCAGCCGTCTAGCACCCAGTGATCCCATGCCTTTGGGAATCCCAGGATGCTGCCCAACGGGAAATTTGTACATTGGGTGCTATCAATGCCACATCACAGGGACCAGCCATCACAGAGCAAAGTGACCTCCACGTCTGATGCTGGGGTCATCA	out-of-frame	AYWLHAFPELYFQKTKK|ehvnclclrsgpvlnpav*	.
TALL_VC096	MRPS9	DHX15	+/+	-/-	2:105089995	4:24529770	splice-site	splice-site	translocation	downstream	downstream	0	1	0	238	1760	low	.	.	.	AAGAAATGTTAGTGGAAAAACTGTCAGATCTAGAT|GTGGCACATTTAGAACGAACAGGGCATTACTTAACTGTGAAAGATAACCAGGTGGTTCAGTTGCATCCCTCTACTGTTCTTGACCACAAACCTGAATGGGTGCTTTATAATGAGTTTGTTCTAACAACAAAGAATTACATCCGGACATGTACAG	in-frame	EMLVEKLSDLD|VAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCT	.
TALL_VC096	OSBPL9	NRD1	+/+	-/-	1:51669512	1:51840514	splice-site	splice-site	inversion	downstream	downstream	0	1	0	84	359	low	.	.	.	CTGgGATTGGTATAGACGATGAGGACGACAGCACCTTCACAATAACTGTTGATCAGAAAACCTTCCATTTCCAGG|ATACATCAAATTACAGAATGGCTTGCAGGCACTTCTGATTTCAGACCTAAGTAATATGtAAGGTAAAACAGGAAATACAACAGATGATGAAGAAGAAGAGGAGGTGGAGGAAGAAGAAGA---TGATGATGAAGATTCTGGAGCTGAAATAGAAGATGAC	out-of-frame	gIGIDDEDDSTFTITVDQKTFHFQ|dtsnyrmacrhf*	.
TALL_VC099	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	3	17	0	113	273	high	.	.	duplicates(28),low_entropy(2),mismappers(1),mismatches(6)	CCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GTT...___...CTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTC?CCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGT	.	.	.
TALL_VC099	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	4	10	0	46	51	high	.	.	duplicates(13),mismappers(3),mismatches(4)	CCCCCAGGGTTGAGAAAGAAGCTGAAGTTAACGGTTGATATCCTATGTCTTTCCTCAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCT	.	.	.
TALL_VC099	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	7	5	0	49	200	high	.	.	duplicates(19),low_entropy(4),mismatches(2)	CGCGGGCAGGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCC...CCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCG	.	.	.
TALL_VC099	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	13	24	0	128	89	medium	.	.	duplicates(38),low_entropy(2),mismappers(2),mismatches(5)	GGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGGTCCGGGTCCCTGCGGCGGACGGGTCGGATCGTGCTCGTGGCC...___ATTTTCTTCAAT...AGAAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGC	.	.	.
TALL_VC099	AHI1	TRBC2	-/+	+/+	6:135287755	7:142801041	intron	splice-site	translocation/3'-3'	downstream	upstream	6	2	5	821	7528	medium	.	.	duplicates(9),mismatches(1)	GGCGGCTCCTCCTGACGATGGGAGGAAAATCAAGAGTGGCACACTGGCTTGATGAACGCTAACAGCAAAAGGACCTGAAAGCTAGGAGACAGCAGGGATGTGCTGAAAGAGGGAGGAGAAGACATCTAACCAAAAGACAAGGATAAATGCAAAGCCATTCCTTCTCTATCTTCTCATAAAGTATCTCTGTAATCTAACAGAGGAAGAAAGTAACGAAGCAAAGCCCTTTTTAAAGGCTCTTGTGATGAAAAGAGAAAGAAACATTCTTCTTAGCAAGCTTATGAAAACAAGTATGAAACTAG|AGGACCTGAAAAACGTGTTCCCACCCgAGGTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGGGGTCAGCACAGACCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCA	.	.	.
TALL_VC099	FP236383.8	bP-2189O9.2(105672),MIR3648-1(351)	+/+	./+	21:8391168	21:8986648	exon	intergenic	deletion	downstream	upstream	105	0	0	335	110	low	.	.	duplicates(170),low_entropy(1),mismappers(10),mismatches(36)	AGGCGGTTCTCGGTGGGGGCCGAGGGCCGTCCGGCGTCCCAGGCGGGGCGCCGCGGGACCGCCCTCGTGTCTGTGGCGGTGGGATCCCGCGGCCGTGTTTTCCTGGTGGCCCGGCCGTGCCTGAG|GTTTCTCCCCGAGCCGCCGCCTCTGCGGGCTCCCGGGTGCCCTTGCCCTCACGGTCCCCGGCCCTCGC	.	.	.
TALL_VC099	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	7	0	68	52	low	.	.	duplicates(6),low_entropy(1),mismatches(1)	GGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGT	.	.	.
TALL_VC099	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	131	650	low	.	.	duplicates(7),low_entropy(1)	GCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCaCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACAC...AAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGC	out-of-frame	ARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC099	TSHR	CEP128	+/-	-/-	14:80976280	14:80939540	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	1	2	0	43	92	low	.	.	duplicates(3),mismappers(2),mismatches(1)	ACAGGCCCACTGGAATCCTGGATAACCTGTTCCCCAAAG|GTGGTTTGGGGAAAGTGTAGGGGCAACCAAAGATCATCtGCTTGACTAGGCCCTTTGCCCTGAACCTCATGAAGAAATGATAGGAGGCAGACATATGTGCCTAAAAAGAGCGTTGAGCTCAGAGAAGAGCAACTCGGAGTTTTGGGGGTGTGCTTT___GATTTGTGTACATCAATGGCAG	.	.	.
TALL_VC099	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	1	2	0	7	5	low	.	.	duplicates(2)	GGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCgCTTTGGGAGGCCGAGGTGGGTG	.	.	.
TALL_VC099	RRBP1	SOBP	-/-	+/+	20:17621755	6:107507067	CDS	intron	translocation	upstream	upstream	0	0	2	103	5	low	.	.	.	CCCAGGCCAAG___GAGGAATCGGAGAAGCAGCTCTGTCTGATTGAGGCGCAGACCATGGAGGCCCTGCTGGCTCTGCTCCCAGAACTCTCTGTCTTGGCACAACAG___AATTACACCGAGTGGCTGC...|...AAAAAAAAAAAAAAGTAACCATGGTTGAAAACTGGGTGGTGCATAAGGAGGGCC	.	.	.
TALL_VC099	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	1	0	16	12	low	.	.	duplicates(5),mismappers(1)	GGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTT...GTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAG	out-of-frame	QICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC099	PEX12	NF1	-/-	+/-	17:35575148	17:31310555	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	2	9	15	low	.	.	duplicates(1)	TGGGGGGGAAAAAAGCTCCTTCCATATACTGTGAGACATTTGTTAAGTGACATCTATTGTTTATCAGCTTTTAAGGATAAAAAAGGTATTTTAAAAGTTGGATATTTAGGATATTTGAGGATATTC...|...GGTCCTCCATTTTAGAAAGCAAGCTCCTCTTTACTGTCTCCCTGCACTCACAAACACAGGCCAGCCACAACAGAGCAGCATTTTGCCGTTGCTTCTTTCATCTACTTCAATCATCTCCCCCCAC	.	.	.
TALL_VC099	BCAS4	NFATC2	+/+	-/+	20:50840703	20:51503153	3'UTR	intron	deletion/5'-5'	downstream	upstream	0	0	2	1111	0	low	.	.	.	ATGGGAaAGGCAGgCGCGGCCTTCGTTGTCAGTAGTTCTTTGATGTGAAAGGGGCAGCACAGTCATTTAAA...GTGGAATGTACAGTGCATATTGgCGGCgCACGCCTCATTACGATTCGCCTGCTTGCTTCTCCTGTTCAATCGTTTCTTTGGAAGGCAGTGGATTTTTCTCTTGCGTCTCTGTCTTCTTCAGTTTCG...|...CGAGGTGGCCAC	.	.	.
TALL_VC099	PEX12	EVI2B	-/-	-/-	17:35575148	17:31310555	3'UTR	intron	deletion	upstream	downstream	0	0	2	9	15	low	.	.	duplicates(1)	TGGGGGGGAAAAAAGCTCCTTCCATATACTGTGAGACATTTGTTAAGTGACATCTATTGTTTATCAGCTTTTAAGGATAAAAAAGGTATTTTAAAAGTTGGATATTTAGGATATTTGAGGATATTC...|...GGTCCTCCATTTTAGAAAGCAAGCTCCTCTTTACTGTCTCCCTGCACTCACAAACACAGGCCAGCCACAACAGAGCAGCATTTTGCCGTTGCTTCTTTCATCTACTTCAATCATCTCCCCCCAC	.	.	.
TALL_VC099	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	9	15	low	.	.	duplicates(3),low_entropy(1)	TTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCC	out-of-frame	FCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmgg	.
TALL_VC099	EEF1A1P13	TRIO	-/-	+/-	5:14652600	5:14317751	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	1630	1	low	.	.	mismatches(1)	GCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGC...CTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTG...|...CCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCC	.	.	.
TALL_VC099	RP11-1017G21.4	IFT27	-/.	-/.	14:102054981	22:36775956	intron	5'UTR	translocation	upstream	downstream	2	0	0	7	88	low	.	.	.	.	.	.	.
TALL_VC099	PEX12	CTD-2370N5.3	-/-	-/-	17:35575148	17:31310555	3'UTR	intron	deletion	upstream	downstream	0	0	2	9	15	low	.	.	duplicates(1)	TGGGGGGGAAAAAAGCTCCTTCCATATACTGTGAGACATTTGTTAAGTGACATCTATTGTTTATCAGCTTTTAAGGATAAAAAAGGTATTTTAAAAGTTGGATATTTAGGATATTTGAGGATATTC...|...GGTCCTCCATTTTAGAAAGCAAGCTCCTCTTTACTGTCTCCCTGCACTCACAAACACAGGCCAGCCACAACAGAGCAGCATTTTGCCGTTGCTTCTTTCATCTACTTCAATCATCTCCCCCCAC	.	.	.
TALL_VC099	THOP1	WDR83OS	+/+	-/-	19:2807779	19:12668426	splice-site	splice-site	inversion	downstream	downstream	2	0	0	192	424	low	.	.	.	GCCTGGGACATGCGCTACTACATGAACCAGGTGGAGGAGACGCGCTACTGCGTGGACCAGAACCTGCTCAAGGAGTACTTCCCCGTGCAGGTGGTCACGCACGGGCTGCTGGGCATCTACCAGG...AGGACGTGCGGCTCTACACCGCGAGGGACGCGGCCTCGGGGGAGGTGGTC|GGCTGTCCATCTCTGCCGTGGTGATGTCCTATCTGCAGAATCCTCAGCCCATGACGCCCCCATGGTGATACCAGCC	out-of-frame	DVRLYTARDAASGEVV|gcpslpw*	.
TALL_VC100	PUM1	HOXA11	-/-	-/-	1:30964674	7:27183028	splice-site	splice-site	translocation	upstream	downstream	2	8	0	254	77	high	.	.	duplicates(32)	GGGATCCGCCCTTGGAGGGTTTGGAACAGCAG___TTGCAAACTCCAACACTGGCAGTGGCTCCCGCCGTGACTCCCTGACTGGCAGCAGTGACCTTTATAAGAGGACATCGAGCAGCTTGACCCCCATTGGACACAGTTTTTATAACGGCCTTAGCTTTTCCTCCTCTCCTGGACCCGTGGGCATGCCTCTCCCTAGTCAGGGACCAGGACATTCACAGACACCACCTCCTTCCCTCTCTTCACATGGATCCTCTTCAAGCTTAAACCTGG|GTGGCCAACGCACCCGCAAAAAGCGCTGCCCCTATACCAAGTACCAGATCCGAGAGCTGGAACGGGAGTTCTTCTTCAGCGTCTACATTAACAAAGAGAAGCGCCTGCAACTGTCCCGCATGCTCAACCTCACTGATCGTCAAGTCAAAATCTGGTTTCAGAACAGGAGAATGAAGGAAAAAAAAATTAACAGAGACCGTTTACAGTACTACTCAGCAAATCCACTCCTCTAAGACTCCAGCGGCTGGAATTGGGTGaGGGGC	in-frame	GSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNL|gGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL*	.
TALL_VC100	JTB	RP11-422P24.11	-/-	+/-	1:153976693	1:153978016	splice-site	exon	duplication/5'-5'	upstream	downstream	4	1	0	739	148	high	.	.	duplicates(11)	GGGCTGCAGAGTAAGTGCCGCCTCTGCGCTCCGACGGAGGCACGAGGCCTGTGGAGTAGGTCCCTCTGTTCCGACAGGTGCGACACTTGGCGCTCCATGCTTGCGGGTGCCGGGAGGCCTGGCCTC...GGCTCCCGTGCAGGAAGAGAAGCTGTCAG___...TATCTTTCCTTTCAGCAAGCACCTCAAATTTGCCATGCTGGCTGGTGGAAGAGTTTGTGGTAGCAGAAGAGTGCTCTCCATGCTCTAATTTCCGGGCT|GGACGAGAACGCGCAGTTTCGCCTCCATCCCTTGACCTCCAACACAGCTTCTCCACTGGATCATCGGTGGCGATGAAGGGGCGGCTGGGGAAGGATGTCAGAGAAACCAGAAGCTTGACGGTGAATCCTCGGGTTTTAAGGAGAGAGCAAAGTCCcGAG	out-of-frame	SFLSASTSNLPCWLVEEFVVAEECSPCSNFRA|greravsppsldlqhsfstgssvamkgrlgkdvretrsltvnprvlrreqsp	.
TALL_VC100	MIR17HG	NAB1	+/+	+/+	13:91347959	2:190649831	splice-site	splice-site	translocation	downstream	upstream	0	1	1	10	34	high	.	.	duplicates(2)	GCCGGGGCTCGCGCTCCTCCGCGAAGCTCTCCTCGCGGGGCGGGCCGGCCGGCCGCACCCCCGGCCTGGGGCCTCCGGTCGTAGTAAAGCGCAGGCGGGCGGGGAGGCGGGAGCAGGAGCCCGCGGCCGGCCAGCCGAAGATGGTGGCGGCTACTCCTCCTG|TTTTCTTTTTAAAAGCGGAAGGAGAGTTTTACATGGAAGTGGCTTACAGAAACTTGGCGCTGAGGTGCAGGGAAGCCAGAAACTCTTTGTGTCTCTAAGGCCGATGAGGAATTTGGAAACACATGTGGGACATACAAGCG	.	.	.
TALL_VC100	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	16	15	0	214	160	medium	.	.	duplicates(106),mismappers(2),mismatches(5)	GGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGC	.	.	.
TALL_VC100	RARRES3(1150),HRASLS2(5158)	SPECC1	./.	+/.	11:63547612	17:20315723	intergenic	3'UTR	translocation	downstream	upstream	1	0	1	9	14	medium	.	.	duplicates(4)	.	.	.	.
TALL_VC100	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	4	0	61	67	low	.	.	duplicates(33),mismatches(1)	GACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAG	.	.	.
TALL_VC100	XXbac-BPG299F13.17	ABHD16A	-/.	-/.	6:31197234	6:31694387	exon	intron	deletion	downstream	upstream	0	0	4	34	7	low	.	.	duplicates(1)	.	.	.	.
TALL_VC100	XXbac-BPG299F13.17	XXbac-BPG32J3.20	-/.	-/.	6:31197234	6:31694387	exon	intron	deletion	downstream	upstream	0	0	4	34	7	low	.	.	duplicates(1)	.	.	.	.
TALL_VC100	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	19	18	low	.	.	duplicates(6),mismappers(1)	GCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCC	.	.	.
TALL_VC100	PXDN	MYT1L	-/-	-/-	2:1633184	2:1983558	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	247	0	low	.	.	mismappers(1)	...AAAAAAAAAAAAAAAAAAGAATCCCTATACCTCATTTGTATTTTTAAAATGCGTGATGTTTTATGAAATTGTGTCCATTTTTTAGGTATTAGATATGGCAGAAAAACCATTTCCACTATGCAAAGTTCTTTTAGACGTC|...GCACTCTCAC	.	.	.
TALL_VC100	GLTSCR1	CYTH2	+/+	+/+	19:47674179	19:48473313	intron	CDS	deletion	downstream	upstream	0	0	2	5	680	low	.	.	duplicates(1),mismappers(1)	CCGGTGCTC...|...GGCAGTGCTCCATGCTTTTGTGGATCTGCATGAGTTCACCGACCTCAATCTGGTGCAGGCCCTCAG___GCAGTTTCTATGGAGCTTTCGCCTACCCGGAGAGGCCCAGAAAATTGACCGGATGATGGA	.	.	.
TALL_VC100	ZNF451	LL0XNC01-237H1.2(7711),RAB40AL(23381)	+/+	./-	6:57161132	X:102913869	CDS	intergenic	translocation	downstream	downstream	0	2	0	62	18	low	.	.	duplicates(9)	TGTGTGCCTTGTTAAATAGCATATCTGATACCACCAAAG___AATGTGACAGTGATGATAACATGGGTGCCAAAAATACTTCAATAGGcGA|GGGTAGACTGTTCTGTAAATATCTGTTAAGTCCATTT...TGATGACCTGTCTAGTGCTGTCAGTGAAGTATTAAAGTCTCCCACTTTTATTGTGTTGCCGTTTATTTCATTTCTTAGGTCTAGTAGTAACTGTTTTATAAATCAAAAGGTCCAGTGTTAGGTGC	out-of-frame	CALLNSISDTTKECDSDDNMGAKNTSIGe|grlfckyllsp	.
TALL_VC100	ZNF7	MCM8	+/.	+/.	8:144844851	20:5955142	intron	CDS	translocation	downstream	upstream	2	0	0	8	53	low	.	.	.	.	.	.	.
TALL_VC101	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	7	20	0	112	265	high	.	.	duplicates(49),low_entropy(1),mismatches(2)	CCCTCGGTACTTCTTGGCTGTTTGG___...CTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGG...CCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCC	.	.	.
TALL_VC101	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	12	1	150	133	high	.	.	duplicates(38),low_entropy(3)	CCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCAcGGTGG	.	.	.
TALL_VC101	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	5	7	0	97	97	high	.	.	duplicates(33),low_entropy(2),mismappers(7),mismatches(4)	AGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAATGTAAGTATTCCTGTT	.	.	.
TALL_VC101	IKZF2	AC079610.1	-/-	-/-	2:213147708	2:212581408	splice-site	splice-site	deletion	upstream	downstream	2	1	0	46	19	high	.	.	duplicates(9),low_entropy(1),mismappers(1)	ATGGTGATGAATCTTTTTTAATCAAAGGACAATTTCTTTT___CATTGCACTTTGACTATGGAAACAGAGGCTATTGATGGCTATATAACGT___GTGACAATGAGCTTTCACCCGAAAGGGAGCACTCCAATATGGCAATTGACCTCACCTCAAGCACACCCAATGGACAGCATGCCTCACCAAGTCACATGACAAGCA|CATTATTCAAAAGAGCCAAGATATGGAAGCAACTGAAGTGCTCATCAACAG___GGTTTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAGACTCAGCTCACTGCAACC	out-of-frame	Mvmnlf*skdnffSLHFDYGNRGY*WLYNV*Q*AFTRKGALQYGN*PHLKHTQWTACLTKSHDKh|iiqksqdmeatevlinrvsfchpgwsavaqtqlta	.
TALL_VC101	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	3	8	0	118	33	medium	.	.	duplicates(17),low_entropy(1),mismappers(1),mismatches(1)	GGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATcGCACA	.	.	.
TALL_VC101	HS3ST3B1	ASPH	+/-	-/-	17:14345551	8:61651123	CDS	splice-site	translocation/3'-3'	upstream	downstream	2	0	0	19	24	medium	.	.	.	GTGGGTAAGGTACATAGCCCGGGTCTGCTCAATCCCAGCCAAAGTCGTGCCCGGTCATCTGGTAGAACTTGAGGTTGAAAGGCCGGTAGAACTCGCGCAGCCTGCGCACCACCTCGCGGTCGAT|ACCCCAGAATATCGAAGATGAAGCAAAAGAACAAATTCAGTCCCTTCTCCATGAAATGGTACACGCAGAACATG___TTGAGGGAGAAGACTTGCAACAAGAAGAgGGACC	.	.	.
TALL_VC101	EPHB6	BRSK1	+/-	+/+	7:142864146	19:55302698	CDS	splice-site	translocation/3'-3'	upstream	upstream	2	0	0	192	16	medium	.	.	duplicates(2)	GGAgGAAGAaGAGGAGGAGGAGGAGGAGGAGGAGGGAAAGCTCTCGTCTGCTGCAATTGTGTCCACCTTGGTCCAGCGTTTGAGGTGCCAGGAGGAAACGCTGTCAGGGCTGTCGGGCTCCTCAGCCTGACGGTAGTAAAGGGTGAAGGTCTCCCGGCAGGTGCCGCCGCTCACACCCAGGCT|GGCGGGAAACACGAGCCAGACCCGTGCCTGGAGCCAGCCCCTGGCCGCCGGGTAGCCATGCGGA	.	.	.
TALL_VC101	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	0	1	14	75	medium	.	.	duplicates(7)	CACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGcATGcGAGT...GGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGG	.	.	.
TALL_VC101	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	3	0	43	27	low	.	.	duplicates(13),low_entropy(1),mismatches(2)	CCCCATCaTGTATGCTGCGCTGAACAcAGACTTCCGCACCctGTACCAACAcCTCTTCTGCTGCAGGCTcGCCAACCGCAACTCCCACAAcACTTCTCcGAGGTCCAgCGCCTCTCAGCTGTCC?GGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGaCCCC	out-of-frame	PImYAALNtDFRTlYQhLFCCRLANRNSHnTSpRSsASQLS?TQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmgd	.
TALL_VC101	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	2	3	0	19	60	low	.	.	duplicates(31),low_entropy(3),mismatches(1)	CCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACC	.	.	.
TALL_VC101	SON	AP000320.7	+/+	+/+	21:33569624	21:34132188	CDS	intron	deletion	downstream	upstream	0	0	3	167	0	low	.	.	.	GCCCCCAAGAGCCCTCTACCACCTTAATTTTCCATTCCTCTATTCCTTTGCCCTCGCACCCCACCCGCTTCATTAGTGCCTGTGCCTTCTTGTAAGATCTCTTGGCCCCCGTTCCTCACTCCTCT...|...GGGAGGGGGTTG	.	.	.
TALL_VC101	LITAF	SNX29	-/.	+/.	16:11614491	16:12012601	intron	intron	deletion/read-through/3'-3'	downstream	upstream	0	0	2	10	10	low	.	.	duplicates(7),mismappers(3),mismatches(6)	.	.	.	.
TALL_VC101	FRAS1	BMP2K	+/+	+/+	4:78542491	4:78825859	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	1	9	low	.	.	.	GACATGTCCTCT...|...CATGATTGACTTAGGAAGCCAGTGTTTTGGCATTTAATCTACTAGTAGCTTATTGCACTTGTTTTTGTCTTGGGTACAATCATTGTTTATTTTCCTCCAATATGCTCTATGATTATATTACATGA	.	.	.
TALL_VC101	FANCM	AMER1	+/+	-/-	14:45176773	X:64185780	CDS	3'UTR	translocation	downstream	downstream	2	0	0	5	24	low	.	.	duplicates(3)	GGgAGGTATTTGGAAATTAAGGAGATAAGTGATGCAAATTATGTTTCGAATCAAGCACTAATACCAAGAGATCATAGTAAAAATTTTACTAGTGGAACTGTTATTATCCCATCAAATGAAGATATG...GGTTATTCTCAGTTTTCTTTACCAGTGCAAAAAAAAGTTATGAGcACACC|GGAGCTCAGTTGATTGTGACATTTTCCCAGAAGAGAGGCTTTGGGGAACTCCTTCACCCCTCTTGCTGCTTTGGGGG	out-of-frame	GYSQFSLPVQKKVMSTp|els*	.
TALL_VC101	ABBA01017803.1	PLCB4	-/-	+/-	16:34266203	20:9367804	exon	intron	translocation/5'-5'	upstream	downstream	0	2	0	37	12	low	.	.	duplicates(1)	GCCGACCACGAGGAACCTTTCATGACGACAGAGATGATGGTGTGGATTATTGGGCCAAAAGAGGAAGAGGTCGTGGT|GTTAGATAAAAATCACTGGAATCAGAAACGACTTCAAAGCcTGTATGACAATGACTTGATTCATAGGATACATACAAATGAAACCAAGACTGCTGGTTAGAAGTGCTTTGATCACAATCTATGTGTCTCTACTTTGCCCA	.	.	.
TALL_VC101	HDAC2	DRG2	-/.	+/.	6:113950986	17:18096151	intron	exon	translocation	upstream	upstream	0	0	2	17	32	low	.	.	.	.	.	.	.
TALL_VC101	CTDP1	NFATC1	+/+	+/+	18:79718016	18:79410403	splice-site	splice-site	duplication	downstream	upstream	2	0	0	681	208	low	.	.	duplicates(1)	CCCCCACCGCCTTGTTCCACCCGATGCCGGTTCTTCCCAAGGCCCAGCCTGGCCCCGAGGTTCGGATCTACGACTCCAACACGGGGAAGCTCATCAGGACGGGCGCCCGGGGGCCCCCAGCACCCTCCAGCTCCCTACCCATCCGCCAGGAGCCCTCTTCCTTCAG|AACACTATGGCTATGCATCCTCCAACGTCAGCCCCGCCCTGCCGCTCCCCACGGCGCACTCCACCCTGCC	out-of-frame	PTALFHPMPVLPKAQPGPEVRIYDSNTGKLIRTGARGPPAPSSSLPIRQEPSSFr|tlwlcilqrqprpaaphgalhp	.
TALL_VC101	NIPAL3	MTERF4	+/+	-/-	1:24419638	2:241094434	splice-site	splice-site	translocation	downstream	downstream	0	1	0	45	66	low	.	.	duplicates(2)	GCCTCCCACAAGTAGCTCCAGCGCCGTAAGCGAGGCCTCCTTCTCCTACA|AGCAGCCTCGTCTTACAGCGTGACTGCAAAGAAAAAGACTTTTGTTTTGCAAAAGAAAAGCAGCTCGGTGACTCCGTCCACATCGCCACAGTTGAGTCAGATGGCAGTGGCAGTCCTTTGCCAGTGGAAGGAGTTCCTGCTAAGGGGAGGTGCAGGAG___A	out-of-frame	PPTSSSSAVSEASFSY|kqprlta*	.
TALL_VC101	ANKRD11	CBFA2T3	-/-	-/-	16:89305206	16:88892485	splice-site	splice-site	deletion	upstream	downstream	1	0	0	753	486	low	.	.	duplicates(3),mismatches(2)	GGCGGGAAGGAGGTGAGGGAGCGAGCCAGCAAGCGGAAGCTGCCCTTCACCGCGGGCGCCAATGGGGAGCAGAAGGACTCGGACACAG|TGATGAACGGCAGCAGCCACTCACCAACAGCCATCAATGGTGCACCGTGCACACCCAACGGCTTC	in-frame	GGKEVRERASKRKLPFTAGANGEQKDSDT|vMNGSSHSPTAINGAPCTPNG	.
TALL_VC101	CBFA2T3	ANKRD11	-/-	-/-	16:88976657	16:89317078	splice-site	splice-site	duplication	upstream	downstream	0	1	0	189	582	low	.	.	duplicates(1)	CGGGGTCCCAGGAAGGGCGGCCCAG|CAGACGGTTGATGATGAAGCGCCGGCCGTGTAAATGAAGATCGGGTGAGGAGCAGGACGATGCCCAAGGGTGGGTGCCCTAAAGCACCACAGCAGGAAG...AGACTGGGAAAAAG___GATAAAGATAAAGTTTCTCTAACCAAGACCCCAAAACTGGAGCGTGGCGATGGCGGGAAGGAGGTGAGGGAGCGAGCCAGCAAGCGGAAGCTGCCCTTCACCGCGGGCaCC	out-of-frame	RGPRKGGP|adg*	.
TALL_VC102	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	6	71	0	172	130	high	.	.	duplicates(13),low_entropy(1),mismappers(1),mismatches(1)	ACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCC	.	.	.
TALL_VC102	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	38	130	low	.	.	.	GCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCT...CAGCAATCCCTGTCACCATtTCATtACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCA	out-of-frame	AAPT|gmsrgqfgqgqepldmffwvneisgeityppqkadap	.
TALL_VC102	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	7	9	1	136	286	high	.	.	duplicates(2),low_entropy(3),mismatches(2)	GCCGGCGGCTGTTGTCGGGCCTCCAGCGGGCGGGGCCGTTGGCGGAGCAGAGGGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTT...___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAG...AGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC102	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	20	286	low	.	.	duplicates(3),read_through(9)	AACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAAaAAAAGCCAAAAGAAGAATACTGCAGCTTCC...AAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCCATGCCAG	out-of-frame	RELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC102	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	5	9	1	41	65	high	.	.	duplicates(2),mismatches(4)	CCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTG___...GG...___...TTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAG...GCAGGATGCCGGCTgCAGGAGCAcCAGTGGAGGTCGGGAAtGCCTCATTGTGGAGCCCCCGCatCCTCAcGAGAAGGCAG...CCTCCcGgGGttCGgGCACCACGTGGTGCaCCCggGTACCGTGACCGcGGACgACCTGAGAAGCTTCCGGCgCTACCACgCCcCCGcCGACCTCCGCATGTCCgCACTGCCT	.	.	.
TALL_VC102	PTBP1	DAZAP1	+/+	+/+	19:799443	19:1417500	splice-site	splice-site	deletion	downstream	upstream	1	4	0	285	222	high	.	.	mismatches(1)	CCATTTTGTGAGTCTATAACTCGGAGCCGTTGGGTCGGTTCCTGCTATTCCGGCGCCTCCACTCCGTCCCCCGCGGGTCTGCTCTGTGTGCCATGGACGG___CATTGTCCCAGATATAGCCGTTGGTACAAAG|GAAGCTCTTCGTGGGCGGTCTTGACTGGAGCACGACCCAAG___AGACTCTGCGCAGCTACTTTTCCCAATATGGAGAAGTCGTAGATTGTGTTATCATGAAAGATAAAACCACCAACCAGTC?CG...___CAGGTTACGGGCAGGACTTGAGTGGCTTCGGACAGGGCTTCTCAGACCCCAGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCGTGCCA	out-of-frame	MDGIVPDIAVGTK|ealrgrs*	.
TALL_VC102	LINC01239	DMRTA1(184942),LINC01239(5518)	+/+	./+	9:22723430	9:22640682	splice-site	intergenic	duplication	downstream	upstream	1	1	1	9	12	high	.	.	duplicates(2)	AAAAGAAATACGGAGGGCATGATACATTTG___GCAGACTAAAATTCTCAAGATTCCTATGCAGTCGAGTTTTACCATATGACTGAGTTCCAACAAAGAAATATGAGTAGAAGATTGTATAAGCATCATTTTTGACCCAGGGCTTTAAGAAGCAG|TTTCTGCACCAAGGACTTTTTGGTGCTGACTACTTGGCTGTTTGATTGAGACAGGAAACCAGACACATCTTAGAGGATTTACAGGAGAATCTGGAGGTGTGAAATGCAAAAACAGGAGTAAACACTCTAAGGAG___ATAATGATACTCAGAGAAGTAGAGAAGCTGGCCTAACATCACAAACCTATGCTGTTG	.	.	.
TALL_VC102	ATHL1	IFITM2	+/+	+/+	11:294196	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	63	85	24	26598	7710	medium	.	.	duplicates(39),low_entropy(14),mismappers(12),mismatches(9)	CAG___...CTCCCTGAGTCCTGATGTTCGCAGGAAAAATCTGGAGATTTACGAGGCTGTGACGTCCCCCCAGGGCCCCGCCATGACCTGG___AGCATGTTTGCTGTGGGCTGGATGGAGCTGAAGGACGCAGTGCGGGCCCGGGGCCTCCTGGACAGGAGCTTTGCCAACATGGCTGAACCCTTCAAG___GTGTGGACGGAGAATGCAGACGGGTCAGGCGCTGTGAACTTCCTGACAGGCATGGGGGGCTTCCTGCAGGCGGTGGTCTTCGGGTGCACGGGGTTCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGG...___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCCACCGCCAAGTGCCTGAACATCTGGGCCCTGATTtTGGGCATCtTCATGACCAT...GGTACCTGCG	in-frame	SLSPDVRRKNLEIYEAVTSPQGPAMTWSMFAVGWMELKDAVRARGLLDRSFANMAEPFKVWTENADGSGAVNFLTGMGGFLQAVVFGCTGFs|GQPPNYEMLKEEQEVAMLGaPHNPAPPtSTVIHIRSETSVPDHVVWSLFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTG	.
TALL_VC102	ATHL1	IFITM2	+/+	+/+	11:294478	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	39	33	34	32382	7710	medium	.	.	duplicates(36),low_entropy(10),mismappers(1),mismatches(12)	CCGGGGCCTCCTGGACAGGAGCTTTGCCAACATGGCTGAACCCTTCAAG___GTGTGGACGGAGAATGCAGACGGGTCAGGCGCTGTGAACTTCCTGACAGGCATGGGGGGCTTCCTGCAGGCGGTGGTCTTCGGGTGCACGGGGTTCAG___...TGACCTTTGACCCTGTGTGTCTGTCGGGGATCTCCAGAGTGAGCGTCTCCGGCATCTTCTACCAGGGGAACAAGCTCAACTTCTCTTTTTCCGAGGACTCCGTGACCGTGGAGGTCACAGCTCGAGCAGGGCCCTGGGCTCCTCACCTGGAGGCTGAGCTGTGGCCATCCCAGTCCCGGCTCTCCCTGTTGCCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGAC	out-of-frame	TFDPVCLSGISRVSVSGIFYQGNKLNFSFSEDSVTVEVTARAGPWAPHLEAELWPSQSRLSLLP|aaslpttrcsrrsrkwlcwgrpttllprrpp*	.
TALL_VC102	ATHL1	IFITM2	+/+	+/+	11:292677	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	3	4	2	16498	7710	low	.	.	duplicates(2),low_entropy(2),mismatches(3)	CGAGTATCCTGATGTTCCACCCAGAAGCCGCCAGGGCCATCCTGGAGTACCGCATCCGCACGCTGGACGGGGCCCTGGAGAACGCCCAGAACCTGGGCTACCAG___GGAGCCAAGTTTGCCTGGGAGAGTGCAGACTCCGGCCTAGAGGTTTGCCCTGAGGACATTTACGGAGTCCAGGAGGTCCACGTCAACGGGGCCGTGGTGTTGGCCTTCGAGCTGTACTACCATACCACCCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCCACCGCCAAGTGCCTGAACATCTGGGCCCTGATTTTGGGCATCTTCATGACCATTCTGCTCgTCATCATCCCAGTGTTGGTCGTCCAGGCCCAGCGATAGATCAGGAGGCATCATTGAGGCCAGGAGCTCTGCCCGTGACCTGTATCCCACGTACTCTATCTTCCATTCC	out-of-frame	SILMFHPEAARAILEYRIRTLDGALENAQNLGYQGAKFAWESADSGLEVCPEDIYGVQEVHVNGAVVLAFELYYHTTQ|rpasqlrdaqggagsgyaggapqpcspdvhrdphpqrdlra*	.
TALL_VC102	ATHL1	IFITM2	+/+	+/+	11:293925	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	7	23306	7710	low	.	.	duplicates(2),mismatches(1)	CTGGGATACCCAGTCCCCTTCTCCCTGAGTCCTGATGTTCGCAGGAAAAATCTGGAGATTTACGAGGCTGTGACGTCCCCCCAGGGCCCCGCCATGACCTGG___AGCATGTTTGCTGTGGGCTGGATGGAGCTGAAGGACGCAGTGCGGGCCCGGGGCCTCCTGGACAGGAGCTTTGCCAACATGGCTGAACCCTTCAAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCCACCGCCAAGTGCC	out-of-frame	LGYPVPFSLSPDVRRKNLEIYEAVTSPQGPAMTWSMFAVGWMELKDAVRARGLLDRSFANMAEPFK|rpasqlrdaqggagsgyaggapqpcspdvhrdphpqrdlra*	.
TALL_VC102	ATHL1	IFITM2	+/+	+/+	11:290600	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	0	11237	7710	low	.	.	duplicates(4),low_entropy(2),mismatches(4)	CCCAGCCCCCTCAACGTCCGGCTGGAGGCCCCTGCAGGGATGGGGGAGCAGCTGACCGAGACCTTCGCCCTGGACACCAACACAG___GCTCCTTTCTTCACACCCTGGAGGGCCCCCGCTTCCGGGCCTCCCAGTGCATCTATGCGCATCGCACGCTGCCCCACGTGCTGGCTTTCCGAGTGTCCATCGCCtGCCTGGCCCCGGGGAGCGGGCCCATCACGCTGCTCCTGCGGTCAGCCTTCTCCCCAGAAAGCCCAGACCTGGACCTGCATCAGGGTCCTGACTTCCAGGGAGCCCG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAG	in-frame	PSPLNVRLEAPAGMGEQLTETFALDTNTGSFLHTLEGPRFRASQCIYAHRTLPHVLAFRVSIAcLAPGSGPITLLLRSAFSPESPDLDLHQGPDFQGAr|gqppnyeMLKEEQEVAMLGaPHNPAPPtSTVIHIRSETSVPDHVVWSLFNTLFMNTCCLGFIAFAYSVKsrdr	.
TALL_VC102	ATHL1	IFITM2	+/+	+/+	11:292997	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	3	13096	7710	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	GGGGCCGTGGTGTTGGCCTTCGAGCTGTACTACCATACCACCCAG___GACCTGCAGCTATTTCGAGAGGCTGGTGGCTGGGACGTGGTCAGGGCTGTGGCCGAGTTTTGGTGCAGTCGTGTTGAGTGGAGCCCCAGGGAGGAAAAGTACCACCTGAGGG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCCACCGCCAAGTGCCT	out-of-frame	GAVVLAFELYYHTTQDLQLFREAGGWDVVRAVAEFWCSRVEWSPREEKYHLR|aaslpttrcsrrsrkwlcwgrpttllprrpp*	.
TALL_VC102	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	18	31	5	203	67	medium	.	.	duplicates(9),low_entropy(3),mismappers(1)	GCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAAT...GTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGG	.	.	.
TALL_VC102	NUS1	SLC25A13	+/-	-/-	6:117675739	7:96121719	CDS	CDS	translocation/3'-3'	upstream	downstream	12	0	3	180	80	medium	.	.	duplicates(2)	CGAGAAGCTGGGTTCCTGCTCCACCTCGGTGATCACCAGGCCCATATGCACAGGCAGCTTCTCCAAGGAACGACCGTCCGCGCGCCAGCGCATCCGGTGGTGTGCGGCTGCCAGGCACGACCCCCCGCGCGGGTGCCGGTGGTGACGGCGGTTCCTGCCGACTGCCGGGGGCTTGCGGAGCGTGAAGCCGAGCGGCGCTAGGACCGCGGCAGAGGCGGCGCGGCAGCAGCGCCGCCAGATCCAGTTCCAGGTGCCGAACCGAACGCGGAGCCAGGAG|TTTGGTGTAACTTTGCTGACTTACGAATTGCTACAGCGATGGTTCTACATTGATTTTGGAGGAGT___AAAACCCATGGGATCAGAGCCAGTTCCTAAATCCAGGATCAACCTGCCTGCCCCGAATCCTGATCACGTTGGGGGCTACAAACTGGC	.	.	.
TALL_VC102	GRAMD4	TBC1D22A	+/+	+/+	22:46674750	22:46792520	splice-site	splice-site	deletion/read-through	downstream	upstream	4	11	0	458	57	medium	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(2)	CGGGCCTTCTCCCATTAGTGTGCGAGAATGGCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTGCTCTACGTCACGGAGAA|CATCCAGCACGTGTATGGTGCCCAGCACCCCCCCTTTGATCCACTGTTACATGGCAC___TTTGCTCAGGTCCACGGCCAAGATGCCGACCACACCAGTGAAGGCCAAGAGGGTCAGCACCTTCCAGGAGTTTGAGAGCAATACCAGCGATGCCTGGGACGCTGGGGAGGACGACGATGAGCTCCTGGCCATGGCGGCGGAGAGCCTGAACTCCGAGGTGGTCATGGAGACGGCCAACCGTGTGCTGCGTAACCACAGCCAGCGGCAGGGGCGGCCCACGCTGCAG	in-frame	MPTDYIRNGVLYVTEn|IQHVYGAQHPPFDPLLHGTLLRSTAKMPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMAAESLNSEVVMETANRVLRNHSQRQGRPTL	.
TALL_VC102	GRAMD4	TBC1D22A	+/+	+/+	22:46674750	22:46797444	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	1	458	91	low	.	.	duplicates(1),low_entropy(2),mismappers(1),mismatches(3)	CGGGCCTTCTCCCATTAGTGTGCGAGAATGGCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTGCTCTACGTCACGGAGAA|AAAGTGCCAGCGATGCCGCCCCTCTGCAGAGGTCCCAGTCTCTCCCACACTCGGCCACCGTCACGCTGGGTGGCACATCTGACCCCAGCACTCTCAGCAGCTCAGCGCTGAGCGAAAGAGAGGCCTCCCGGCTCGACAAGTTCAAGCAGCTGCTTGCCGGCCCCAACACGG	out-of-frame	MPTDYIRNGVLYVTEk|kcqrcrpsaevpvsptlghrhagwhi*	.
TALL_VC102	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	7	3	100	338	medium	.	.	duplicates(4),mismatches(1)	ATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGC...ATGGAGGGCAGTGATTTTGAAAGCTCCGGAGGGCGAGGGTTAAAAA___AAGGCCGGGGTCAGAAAGAAAAAAGAGGGTCCCGGGGCCGAGGCAGGAGGACATCAGAGGAAGACACACCAAAGAAAAAG	.	.	.
TALL_VC102	ANKRD36	RP11-734K23.9	+/+	+/+	2:97241479	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	7	3	3	603	470	medium	.	.	duplicates(4),low_entropy(2)	CTTTGCTGTAATTGTAAGAATGTCATATTACTCATTGATCAACATGAAATGAAGTGTAAAG___ATTGTGTTCACCTATTGAAAATTAAAAATACATTTTGTTTATGGAAAAGATTAATAAAACTTAAAGATAACCACTGTGAGCAACTTAGAGTAAAAATTCGAAAACTGAAAAATAAGGCTAGTGTACTACAAAAGAGAATATCTGAAAAAGAAGAAATAAAATCGCAGTTAAAGCATGAAATACTTGAATTGGAAAAAGAACTCTGTAGTTTGAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTTGGACATCTGTAGTATTCCTGGTCTCGAATCATCCTGATATTCTTCATTTTGTTATTCACATTGGAC	out-of-frame	LCCNCKNVILLIDQHEMKCKDCVHLLKIKNTFCLWKRLIKLKDNHCEQLRVKIRKLKNKASVLQKRISEKEEIKSQLKHEILELEKELCSLs|fstdttqssaslqwqtdlkifi*	.
TALL_VC102	ANKRD36	RP11-734K23.9	+/+	+/+	2:97233871	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	4	67	272	low	.	.	duplicates(2)	CAAACATCCACACCAG___CAGAACAAGACTTAGAAATGGCATCAGAGGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG___GTGAAAAACCAAATACATTCTAGGGATGACCTTGATGACATAATTCAGTCATCTCAAACAGTCTCAGAGGACGGTGACTCGCTTTGCTGTAATTGTAAGAATGTCATATTACTCATTGATCAACATGAAATGAAGTGTAAAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAG___ACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTC	out-of-frame	QTSTPAEQDLEMASEGEQKRLEEYENNQPQVKNQIHSRDDLDDIIQSSQTVSEDGDSLCCNCKNVILLIDQHEMKCK|gdgis*	.
TALL_VC102	ANKRD36	RP11-734K23.9	+/+	+/+	2:97241479	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	4	603	272	low	.	.	duplicates(1),low_entropy(1)	AGAACAGAGCCCTCAGAAATAAtGCCGCATATCTACAACTATCTGATCTTcGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCC...GTGAAGTATGCGGTATTTTGGCCTGGCTCATGGGAATGGACCCTCTTCCAGTCATT___ATTGTGTTCACCTATTGAAAATTAAAAATACATTTTGTTTATGGAAAAGATTAATAAAACTTAAAGATAACCACTGTGAGCAACTTAGAGTAAAAATTCGAAAACTGAAAAATAAGGCTAGTGTACTACAAAAGAGAATATCTGAAAAAGAAGAAATAAAATCGCAGTTAAAGCATGAAATACTTGAATTGGAAAAAGAACTCTGTAGTTTGAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAG___ACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTC	out-of-frame	*smryfglahgngpssshYCVHLLKIKNTFCLWKRLIKLKDNHCEQLRVKIRKLKNKASVLQKRISEKEEIKSQLKHEILELEKELCSLr|*	.
TALL_VC102	ANKRD36	RP11-734K23.9	+/+	+/+	2:97250173	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	3	255	470	low	.	.	.	CCAAATTGAGCGGCTTGAGAAAATCCTGCAGCATTCAAGTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTTGGACATCTGTAGTATTCCTGGTCTCGAATCATCCTGATATTCTTCATTTTGTTATTCA	out-of-frame	QIERLEKILQHSSLMLQVFES*mk|flhrhypkqcfttvadrpenfhlkqqselqrqvtnqcgg*	.
TALL_VC102	ANKRD36	RP11-734K23.9	+/+	+/+	2:97250173	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	4	255	272	low	.	.	duplicates(1),low_entropy(1)	GGAAGAAATTAGACCAGATGAGAAGTCAA___TTTCAAGAAATACAGGATCAACTTACAGCTACTATAAGATGTACTAAGGAGATGGAAGGCGACACACAAAA___GCTTGAAGTAGAACATGTGATGATGAGAAAAATTATTAAAAAACAGGATGACCAAATTGAGCGGCTTGAGAAAATCCTGCAGCATTCAAGTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGaAC...GAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAG___ACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTC	out-of-frame	KKLDQMRSQFQEIQDQLTATIRCTKEMEGDTQKLEVEHVMMRKIIKKQDDQIERLEKILQHSSLMLQVFES*mk|vmasaekgrkpmre	.
TALL_VC102	ANKRD36	RP11-734K23.9	+/+	+/+	2:97224879	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	173	470	low	.	.	.	G___CAGAACAAGACTTAGAAATGGCATCAGAGGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTcGGAC	out-of-frame	AEQDLEMASEGEQKRLEEYENNQPQ|flhrhypkqcfttvadrpenfhlkqqselqrqvtnqcgg*	.
TALL_VC102	ANKRD36	RP11-734K23.9	+/+	+/+	2:97224879	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	173	272	low	.	.	mismatches(1)	CAGCCACCAAAATGAAGGATGTACAAACATCCACACCAG___AACAAGACTTAGAAATGGCATCAGAGGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAGGCAGGC___TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGAC	out-of-frame	ATKMKDVQTSTPEQDLEMASEGEQKRLEEYENNQPQ|vmasaekgrkpmrgh*	.
TALL_VC102	ANKRD36	RP11-734K23.9	+/+	+/+	2:97250173	2:97291540	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	255	681	low	.	.	.	AGAAAATCCTGCAGCATTCAAGTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG|AGATAGAATCTCACTATGTTGACCAGGCTGGTCTTGAACTCTTGGCACCCAAGCGATCCTTTTGCCTGGAATCCCAAAGTGTCAGATTTACTGAAGAATATTTC	out-of-frame	KILQHSSLMLQVFES*mk|r*	.
TALL_VC102	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	12	1	0	248	87	medium	.	.	duplicates(5),low_entropy(1)	ACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGC?CGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGAC	.	.	.
TALL_VC102	ITM2C	PTMA	+/+	+/+	2:230865145	2:231711348	splice-site	splice-site	deletion	downstream	upstream	6	2	0	419	10576	medium	.	.	duplicates(3),low_entropy(1),mismatches(9)	CTCGGAGCGGCGGAGGCAGAGACCGAGGCTGCACCGGCAGAGGCTGCGGGGCGGACGCGCGGGCCGGCGCAGCCATGGTGAAGATTAGCTTCCAGCCCGCCGTGGCTGGCATCAAGGGCGACAAGGCTGACAAGGCGTCGGCGTCGGCCCCTGCGCCGGCCTCGGCCACCGAGATCCTGCTGACGCCGGCTAGG|GACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCT___AATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATG___GTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAG___GATGACGATGTCGATACCAAGAAGCtGAAGA	in-frame	MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR|DLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKlK	.
TALL_VC102	CEACAM3	CEACAM3	+/+	+/+	19:41807383	19:41803759	3'UTR	intron	duplication	downstream	upstream	2	1	0	19	2	medium	.	.	duplicates(1)	CAGAGCCTCCCGGTCAGTTCCAGGCTGCAGCTGTCCAATGACAAGAGGACCCTCACTCTACTCAGTGTCACAAGGAATGACACAGGACCCTATGAGTGTGAAATACCGAACCCAGTGGGTGCCAGCTACAGTGACCCAGTCACGCTGAATG|CCCaGCCTGAAACAGCAAAGCTTTAAAAGAGTGGGAAAAGGCCGGGCGTGGTTGTTCATGCTTGTAATCCCTGCACTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGATGATACCC	.	.	.
TALL_VC102	PRR3(7269),ABCF1(384)	MTMR3	./-	+/+	6:30570992	22:29957036	intergenic	splice-site	translocation	upstream	upstream	1	0	1	12	25	medium	.	.	duplicates(2)	CGCCGTGACCTCCCGACGCCGCGAGACTCAAGGAATGAACATAATAATTTCCTACTA___TTCTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCTGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAACACGAGCCCATCAG|ACTTCCTTGTGAAACCTCCTAGTAGAAAAAGTTCTTGGGACAAACTTCATTTG___ACTTCACCATAAGGGAAAGAAGAGAGCCTTGTTGGACACTGAAGAAGGGACGGGGATTTCTCCTCCTAATCTGGGCCTCTTGTCATGGTAAGTACAAGGAAAT	.	.	.
TALL_VC102	ACSF3	CBFA2T3	+/+	-/-	16:89102759	16:88901656	splice-site	splice-site	inversion	downstream	downstream	0	1	1	325	105	medium	.	.	.	CACGGGGAGGCCCAAGGGCGTGCTGAGCACGCACCAAAACATCAGGGCTGTG___GTGACCGGGCTGGTCCACAAGTGGGCATGGACCAAAGACGACGTGATCCTCCACGTGCTCCCGCTGCACCACGT...GTCAACGCGCTGCTCTGTCCTCTCTGGGTGGGAGCCACCTGTGTGATGATGCCTGAGTTCAGCCCTCAGCAG|CCCCAGTGGACAGGAAAGCTAAGGCCTCAGCGATGCCGGACTCCCCAGCGGAGGTGAAGACGCAGCCCCGGTCCACACCCCCCAGCATGCCGCCCCCACCGCCTGCCGCATCCCAGGGGGCCACACGCCCCCCCTCCTTCACGCCACACACAC___TGATGAACGGCAGCAGCCACTCACCAACAGCCATCAATGGTGCACCGTGCAC	out-of-frame	VNALLCPLWVGATCVMMPEFSPQQ|pqwtgklrpqrcrtpqrr*	.
TALL_VC102	ACSF3	CBFA2T3	+/+	-/-	16:89098763	16:88901656	splice-site	splice-site	inversion	downstream	downstream	0	1	0	125	105	low	.	.	.	CTTGTGAACTGCGAACTTCCCCTTACCTCCTCTCTCTGGCTCGGGAGCTGG|CCCCAGTGGACAGGAAAGCTAAGGCCTCAGCGATGCCGGACTCCCCAGCGGAGGTGAAGACGCAGCCCCGGcCC...GCCCGGCCACCTCGTCCACAGCCTCCTTGTCCACACAGCACCTGCCCCCAGCCTGCGGGGCCCGGCAGCTCAGCAAGCTCAAGCGCTTCCTCACCACACTGCAGCAGTTTGGCAGCGACATCTCCC	.	.	.
TALL_VC102	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	9	0	16	136	low	.	.	mismatches(1)	CTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCACACTGCCCTGCAC...___GTCTTTAAGATGCTCAGCAATAAGGAGTCTCTGGATCAG...AAGGACCTCTTCTCTGTCTTCGCTGATCCCAATATGCTTGATAC___GTTGGTGCCTGCTCACCCAGCCCTCGTCAATGCCATTGTCCTGGTTCTGCACTCCGTAGCAGGCAGTGCCCCAATGCCTG	.	.	.
TALL_VC102	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74458896	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	16	57	low	.	.	duplicates(2)	AGGCGCCATACCGAGTACAGCCATGGAGACCACT|GGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCACCTGGCGGTGAAGCTGGCTGACCAGCCACTTACTCCAAAGTCTATTCTTCGGTTGCCAGAGACAGAACTGGGAGAATACTCGCTAGGGGGCTATAGTATTTCATTTCTGAAGCAGCTTATTG	.	.	.
TALL_VC102	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74452378	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	16	143	low	.	.	.	GCCATACCGAGTACAGCCATGGAGACCACT|AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCACACTGCCCTGCACAGCAGCTCCTCTTACAGGGAGGCG___GTCTTTAAGATGC...___GGGTTCTCCAGG...GACTGACTCCTCTTCCCGGAGCATGCCCTCCAGCTCATACCGGGATATGCCAG___GTGGCTTCCTGTTTGAAGGGCTCTCAGATGATGAGGATGACTTTCACCCA___AACACCAGGTCCACACCCTCTAG	.	.	.
TALL_VC102	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	4	0	140	28	low	.	.	duplicates(2),low_entropy(4)	CTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCcCTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCC	.	.	.
TALL_VC102	MGMT	RP11-109A6.3(44288),EBF3(21560)	+/+	./+	10:129759341	10:129813723	splice-site	intergenic	deletion/read-through	downstream	upstream	2	4	0	281	6	low	.	.	duplicates(1),mismatches(1)	CCCGAGGCTATCGAAGAGTTCCCCGTGCCGGCTCTTCACCATCCCGTTTTCCAGCAAG___AGTCGTTCACCAGACAGGTGTTATGGAAGCTGCTGAAGGTTGTGAAATTCGGAGAAGTGATTTCTTACCAGCAATTAGCAGCCCTGGCAGGCAACCCCAAAGCCGCGCGAGCAGTGGGAGGAGCAATGAGAGGCAATCCT|GTCTTGGAAGAAACCATCACACCGAGGTCATTTCTGAGCACAGCGTGGAAGCTCCTATGTTTGCAGGCAAGTGATTGATTGAAGTTTGGCTAAAAGAAAGCAACAAACCGGGGTCTCGGACTGTGTGAAATTGTAATAGTTAAAGCCTCCTCCCAGTGACCAATCACTGCTGACCACACTCTGCAGGCCTCCTGCTCAAACCAG...TTgCAGATTGATTCCTTGGAGTGGAATTAGTAAAAAGGATATGAATATTTTTAGTCTCTTGATATGTcAGACTGATTTCCAGAAGGCTTGTACCAATTTACTCTTCTACCGACAACT	out-of-frame	PEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNP|vleetitprsflstawkllclqasd*	.
TALL_VC102	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	2	3	1	366	27	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	GTCGCTTATG___GCTGCCGTGTGGAATCCATCTACCTGAACGTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGaTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGACCAATTAACCTGAG	out-of-frame	VAYGCRVESIYLNVESVCTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|eiksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
TALL_VC102	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	1	4	0	52	165	low	.	.	duplicates(2),low_entropy(2),mismappers(1),mismatches(1)	AAAGTACTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCAC...GTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|?TTATCAATACTCTGtCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCC	.	.	.
TALL_VC102	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528417	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	103	165	low	.	.	duplicates(1),mismatches(1)	AAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA___AAATGTGGTAAAGTACTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGG	.	.	.
TALL_VC102	GCDH	FARSA-AS1	+/+	+/+	19:12897863	19:12933149	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	1	144	144	low	.	.	mismatches(1)	CTGGCAGACATGCTCACTGAGATTACCCTGGGCCTTCACGCCTGCCTGCAGCTCGGCCGCTTGAAGGACCAGGACAA___GGCTGCCCCCGAGATGGTTTCTCTGCTGAAGAGGAATAACTGTGGGAAAGCCCTGGACATCGCCCGCCAGGCCCGAGACATGCTGGGGGGGAATGGGATTTCTGACGAGTATCACGTGATCCGGCACGCCATGAACCTGGAGGCCGTGAACACCTACGAAG|AGAACAGACTCAGCCGTCACCTGCACCAGGCCGCTCTCCCTGACCCCCAAGGCTGGGTCAGCTGTCACAGCTGGGTCCCCTGTTTTCCCCCATCACTCTGGTTCTTGAAGCACCTTCCTATTACGTCGCAACCTGCGTGAGGGCAGCAACCGCG-CTTCCTCGTCCATCATCGTACCCTCTACCCACGCTGACCG	out-of-frame	LADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYE|enrlsrhlhqaalpdpqgwvschswvpcfppslwflkhlpitsqpa*	.
TALL_VC102	GCDH	FARSA-AS1	+/+	+/+	19:12896421	19:12933149	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	142	144	low	.	.	.	CTCAGCCACAGGCATGATCATCATGGACGGTGTGGAGGTGCCAGAGGAGAATGTGCTCCCTGGTGCATCCAGCCTGGGG|AGAACAGACTCAGCCGTCACCTGCACCAGGCCGCTCTCCCTGACCCCCAAGGCTGGGTCAGCTGTCACAGCTGGGTCCCCT	out-of-frame	SATGMIIMDGVEVPEENVLPGASSLG|rtdsavtctrplsltpkagsavtags	.
TALL_VC102	PTPRCAP	PPP1CA	-/-	-/-	11:67437617	11:67419597	splice-site	splice-site	deletion/read-through	upstream	downstream	0	5	0	241	79	low	.	.	.	GCCAGAGCTGGAGGTGGGTGCCCGGCACGGAGGGGCCTGCGGACCAATG|CTTCTCCAGCAGCGCCAGCACTGTGTCCACCACTGCACCCAGCTCTGCCCGCGGGTGCAGACGCCATGCCTGCCGCCCCCGCCAGCGCCAGCCACTGAGCTTCACAGCTACCTGCAGCAAGGAGGGGAAAGGGGCCTCCTGGACACCACCCCAGGTACTGCAGGGTGGGGCACTTCCGCCACAGGAGCCG___GGCTCGCGGCCTGGCAAGAATGTACAGCTGACAGAGAACGAGATCCGCGGTCTGTGCCTGAAATCCCGG	out-of-frame	M|llqqrqhcvhhctqlcprvqtpclppppapatelhsylqqggerglldttpgtagwgtsatgaglaawqectadrerdprsvpeip	.
TALL_VC102	PTPRCAP	PPP1CA	-/-	-/-	11:67437617	11:67398856	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	241	717	low	.	.	.	CCGGCACGGAGGGGCCTGCGGACCAATG|GTGGTAGAAGACGGCTACGAGTTCTTTGCCAAGCGGCAGCTGGTGACACTTTTCTCAGCTCCCAACTACTGTGGCGAGTTTGACAATGCTGGCGCCATGATGAGTGTGGACGAGACCCTCATGTGCTCTTTCCAG___ATCCTCAAGCCCGCCGACAAGAAC	in-frame	M|VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK	.
TALL_VC102	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	9	7	low	.	.	.	CAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAG	out-of-frame	QLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseep	.
TALL_VC102	AF196779.12	TFE3	-/-	-/-	X:49075364	X:49040568	splice-site	splice-site	deletion/read-through	upstream	downstream	3	1	0	378	61	low	.	.	duplicates(1),low_entropy(1)	CTTTGACACACAATCCAAGGAGAAACTGGTGGAGCTGCGCCGAGGCACTGACCCTGCCACCCTCTACTG___CATTAACTTCAGCCACGACTCCTCCTTCCTCTGCGCTTCCAGTGATAAGGGTACTGTCCATATCTTTGCTCTCAAGGATACCCGCCTCAACCGCCGCTCCGC|CCTGAACTCTTTGCTTCCGGAATCCGGGATTGTTGCTGACATAGAATTAGAAAACGTCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAACCCTTACCCCTTCGCTCAAG___GGGGCTCCAGGACCCCTGCCATGTCGTCATCTTCTT	in-frame	FDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSa|LNSLLPESGIVADIELENVLDPDSFYELKSQPLPLRSRGLQDPCHVVIF	.
TALL_VC102	WDR45	TFE3	-/-	-/-	X:49075364	X:49040568	splice-site	splice-site	deletion/read-through	upstream	downstream	3	1	0	378	61	low	.	.	duplicates(1),low_entropy(1)	CTTTGACACACAATCCAAGGAGAAACTGGTGGAGCTGCGCCGAGGCACTGACCCTGCCACCCTCTACTG___CATTAACTTCAGCCACGACTCCTCCTTCCTCTGCGCTTCCAGTGATAAGGGTACTGTCCATATCTTTGCTCTCAAGGATACCCGCCTCAACCGCCGCTCCGC|CCTGAACTCTTTGCTTCCGGAATCCGGGATTGTTGCTGACATAGAATTAGAAAACGTCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAACCCTTACCCCTTCGCTCAAG___GGGGCTCCAGGACCCCTGCCATGTCGTCATCTTCTT	in-frame	FDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSa|LNSLLPESGIVADIELENVLDPDSFYELKSQPLPLRSRGLQDPCHVVIF	.
TALL_VC102	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	210	110	low	.	.	mismatches(1)	AACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAAC	out-of-frame	NRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL_VC102	ARAP1	PDE2A	-/-	-/-	11:72687688	11:72642326	splice-site	splice-site	deletion/read-through	upstream	downstream	3	1	0	796	6	low	.	.	.	CCGG___AGCCAGAGGCCGTGGAGCGGGGCCCCTGAGACC___AGTCACCGGCCTGAGAAGGAGTGGCCTATTAAGAGTCTCAAAGTCTACCTGGGAGTGAAGAAGAAACTCAGGCCACCCACCTG___CTGGGGCTTCACAGTGGTGCATGAGACAGAGAAACATGAGAAGCAGCAGTG|GCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAGCCGCCGCCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG___CCAGCCTGGACCCCCTTGCAAAGGAGCCAGGACCCCCAGGGAGTAGAG	in-frame	RSQRPWSGAPETSHRPEKEWPIKSLKVYLGVKKKLRPPTCWGFTVVHETEKHEKQQw|RGQQVFLKPDEPPPPPQPCADSLQPAWTPLQRSQDPQGV	.
TALL_VC102	ARHGAP9	INHBE(281),GLI1(574)	-/-	./-	12:57474423	12:57459561	splice-site	intergenic	deletion/read-through	upstream	downstream	1	2	1	1269	18	low	.	.	duplicates(1)	CTGTGGATAAAAGAG___GTCTAGATGTGGATGGCATTTATCGGGTGAGCGGGAACTTGGCAGTGGTCCAGAAGCTTCGCTTTCTGGTGGACAGAG___AGCGTGCGGTCACCTCCGATGGGAGGTATGTGTTCCCAGAACAGCCAGGACAAG|GCCTCACCCcTTGGATGGAACTTGCAGCGGCCGGGACAGAGTTGCGGTTTGGGGCAAATCAAGTTGGGTTGGGGGCTCTGGAAGAAGGTGAGGAGTCTATGGAGCATAAAAGCAAGGAGCAGCGGCTGAGGCTCTGGGTGCAGGaTGTGGTTCACGAGGTCACCAAGGAGCCCTGGGACTGAAGCCCCTTTgCCTAGAACCCCGGCTCTACG	out-of-frame	VDKRGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYVFPEQPGQ|gltpwmelaaagtelrfganqvglgaleegeesmehkskeqrlrlwvqdvvhevtkepwd*	.
TALL_VC102	STIL	TAL1	-/-	-/-	1:47313847	1:47224098	intron	splice-site	deletion/read-through	upstream	downstream	2	1	0	7	41	low	.	.	.	CGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG___GAGCCTGGAGCAGATGACGAGAAGGGGAGCTAGTGGGAGAAATTAAGCAGTCCATGAAATCCTTGGGTATCATCTGAGCTAAG|CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAGCAGAATGTGAACGGGGCCTTTGCCGAGCTCCGCAAGCTGATCCCCACACATCCCCCGGACAAGAAG	.	.	.
TALL_VC102	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	17	19	low	.	.	duplicates(1)	AACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAG...GCAGCGGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGGGGCGGCGCCGCGAGAGACTTAAAGGGCCGCGACGCGGCGACGGCCGAAGCGCGCCATCG	.	.	.
TALL_VC102	STIL	TAL1	-/-	-/-	1:47314036	1:47224098	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	17	41	low	.	.	.	CCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAGCAGAATGTGAACGGGGCCTTTGCCGAGCTCCGCAAGC	.	.	.
TALL_VC102	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	17	17	low	.	.	low_entropy(1)	GAGGTTTCTGACCAGTCAGCAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAtGACCCG...CCCAG___GATGACCGAGCGGCCGgCGAGCGgGGCGGCTCGCAGTGACCgCCAGC	.	.	.
TALL_VC102	MRPL27	AC015909.1(3157),XYLT2(17493)	-/-	./-	17:50370032	17:50328599	splice-site	intergenic	deletion/read-through	upstream	downstream	2	1	0	81	12	low	.	.	.	GAAAGTCATCAGGCAGACGCCAAGGCATTAAGAAAATGGAAG___GTCACTATGTTCATGCTGGGAACATCATTGCAACACAGCGCCATTTCCGCTGGCACCCAGGTGCCCAT|CTGACTGCAGCTGCTGACTTCAGGGAAGCACATCAGAGTCGCCGGCTGCGTTGAAGTTGCTGCCAAGCCCAcGGCCGCACTTTGCGATGTATGCGTTTTCTGTGAAAACACTCCACAGAAACCC	out-of-frame	KSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAH|ltaaadfreahqsrrlr*	.
TALL_VC102	RP11-20I20.4	MAEA	+/+	+/+	4:1167935	4:1332757	exon	splice-site	deletion/read-through	downstream	upstream	1	2	0	256	225	low	.	.	duplicates(1)	ATAGCAACCTCGGACACAACCTAGGGACTGGAGTTGCGCGTTTCTACGTAAGAGCCGGAGCTGCCGCTCAAGTCCCTGTGGTGGTGGAACTCCCACATCGTGGCAGA|ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGGACGAGGTGCGCCAGGCCATGGGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCGTACAAG___GACC...TCTGTGTTCACCCTCACCCTGCAGGCcGGCCTCTCAGCCATCAAGACACC___ACAGTGCTACAAGGAGGACGGCAGCTCCAAGAGCCCTGACTGCCCTGTGTGCAGCCGCTCCCTGAACAAGCTGGC	.	.	.
TALL_VC102	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	1	0	33	7	low	.	.	duplicates(1),low_entropy(1),mismappers(1)	CCCACAGTCAAATCTGTCCAG___...AAAACTAGAAGCTTTCCATTTAGTAGGCAGCACCAGTGGATGTAATGAAAATGATAAATCATTCTCAAATTATATTTGTTACACATTAGGGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAG?ACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATG	out-of-frame	kleafhlvgstsgcnendksfsnyicytlGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL_VC102	SPNS3	SPNS2	+/+	+/+	17:4453205	17:4513247	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	88	9	low	.	.	.	GTTTGCTTCAGACTG___CCTGATTTTTGGGGCACTGACCATCATGACCGGCGTCATTGGGGTCATCTTGGGGGCAGAAGCTGCGAGGAGGTACAAGAAAGTCATTCCAGGAGCTGAGCCCCTCATCTGCGCCTCCAGCCTGCTTGCCACAGCCCCCTGCCTCTACCTGGCTCTCGTCCTGGCCCCGACCACCCTGCTGGCCTCCTAT|GCGTCCTTCTGGACATCCAGCAGCACTTTGGGGTCAAGGACCGAGGCGCCGGCCTGCTGCAGTCAG___TGTTCATCTGTAGCTTCATGGTGGCTGCCCCCATCTTCGGCTACCTGGGCGACCGCTTCAACAGGAAGGTGATTCTCAGCTGCGGC	out-of-frame	LLQTA*FLGH*PS*PASLGSSWGQKLRGGTRKSFQELSPSSAPPACLPQPPASTWLSSWPRPPCWPPm|rpsghpaalwgqgprrrpaavsvhl*	.
TALL_VC102	SPNS3	SPNS2	+/+	+/+	17:4478637	17:4513247	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	94	9	low	.	.	mismatches(1)	CTTCTGTCCTGCAACTGGGCAGTGGTTGCCGACATCCTGCTG|GCGTCCTTCTGGACATCCAGCAGCACTTTGGGGTCAAGGACCGAGGCGCCGGCCTGCTGCAGTCAG___TGTTCATCTGTAGCTTCATGGTGGCTGCCCCCATCTTCGGCTACCTGGGCGACCGCTTCAACAGGAAGGTGATTCTCAGCTGCGGCATTTTCTTCTGGTCGGCCGTCACCTTCTCC	out-of-frame	LLSCNWAVVADILL|asfwtssstlgsrteapaccsqcssvaswwlppssatwatastgr*	.
TALL_VC102	ABLIM1	AFAP1L2	-/-	-/-	10:114437844	10:114340731	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	152	11	low	.	.	duplicates(2)	AAATGGGCTTCACCGG___CCTGTTTCTACCGACTTCGCTCAGTATAACAGCTATGGGGATGTCAGCGGGGGAGTGCGAG___ATTACCAG___ACACTCCCAGATGGCCACATGCCTGCAATGAGAATGGACC...TTCCATATGAAATGCTCATGGTGACCAACAGAGGGCGAAACAAAATCCTCAGAGAGGTGGACAGAACCAGGCTGGAG|CCCTGGAACAGCTGCTGACAGAGTTGGATGACTTCCTCAAGATTCTTGACCAGGAGAACCTGAGCAGCACAGCACTGGTGAAGAAGAGCTGCCTGGCGGAGCTCCTCCGGCTTTACACCAAAAGCAGCA___GCTCTGATGAGGAGTACATTTATATGAACAAAGTGACCATCAACAAGCAACAGAATGCAG	out-of-frame	PYEMLMVTNRGRNKILREVDRTRLE|pwnsc*	.
TALL_VC102	HMGN2(11457),DPPA2P2(31925)	RPS6KA1	./+	+/+	1:26487429	1:26536925	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	31	21	low	.	.	mismappers(1),mismatches(1)	GGCCAAATGCCAACACACTGAGGATGGCAGAGCAGAGGAAAGCCTGAGACAGCACGGAGCTGTCAAGCCAACTTCAGAGCTCCCACCCTCCAGATACTCAGTGAAGTCAAATGCCTTTCTTTTTGTCAG|AATGGACAGACCTCAGGGGAAGAAGCTGGACTTCAGCCGTCCAAG___GATGAGGGCGTCCTCAAGGAGATCTCCATCACGCACCACGTCAAGGCTGGCTCTGAGAAGGCTGATCCATCCCATTTCGAGCTCCTCAAGGTTCTGGGCCAGGGATCCTTTGGCAAA___GTCTTCCTGGTGCGGAAAGTCACCCGGCCTGACAGTGG	.	.	.
TALL_VC102	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	26	17	low	.	.	.	GCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GTTTTGGAGATCTCAACTCTGGCTGTGTACCGATTGCCACACCCAGGCTG___GAGG...TGGGCCTGCTGTCGCTGTGGGACATGACCCGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCA...CCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCAC	out-of-frame	GLLSLWDMTRMLNMLIVFRFLRIIPSMK|*	.
TALL_VC102	NDUFA11	FUT6	-/-	-/-	19:5896453	19:5832579	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	854	4	low	.	.	.	CAATCCTCCGGGCACCTTCCTTGAAGGAGTGGCTAAGGTTGGACAATACACGTTCACTGCAG___CTGCTGTCGGGGCCGTGTTTGGCCTCACCACCTGCATCAGCGCCCATGTCCGCGAGAAGCCCGACGACCCCCTGAACTACTTCCTCGGTGGCTGCGCCGGAGGCCTGACTCTGGGAGCACGCA|ATACTCTGACCCATGGATCCCCTGGGC	out-of-frame	NPPGTFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLTLGAR|ntlthgspg	.
TALL_VC102	EPSTI1	LAMTOR4	-/-	+/+	13:42991978	7:100149499	splice-site	splice-site	translocation	upstream	upstream	0	1	1	29	338	low	.	.	duplicates(1)	GGTGAACTCCGGGCTCGGCGCCTCCCCTGCCTCCCGCCCGACCCGGGATCCCCAGGACCCTTCTGGGCGGCAAGGGGAGCTGAGCCCCGTGGAAGACCAGAGAGAGGGTTTGGAGGCAGCCCCTAAGGGCCCTTCGCGGGAGAGCGTCGTGCACGCGGGCCAGAGGCG|ACTTCTGCaCTGACCCAGGGGCTGGAGCGAATCCCAGACCAGCTCGGCTACCTGGTACTGAGTGAAGGTGCAGTGCTGGCG___TCATCTGGGGACCTGGAGAATGATGAGCAGGCAGC	out-of-frame	VNSGLGASPASRPTRDPQDPSGRQGELSPVEDQREGLEAAPKGPSRESVVHAGQRr|llh*	.
TALL_VC102	TSC2	HAGH	+/+	-/-	16:2050486	16:1809833	splice-site	splice-site	inversion	downstream	downstream	1	0	1	69	212	low	.	.	duplicates(1)	CAAATCCCAGGTCTGCAGAGGGTAAACAGACGGAGTTTATCATCACCGCGGAAATACTGAGA___GAACTGAGCATGGAATGTGGCCTCAACAATCGCATCCGGATGATAGGGCAGATTTGTGAAGTCGCAAAAACCAAGAAATTTGAAGAG|GAGAAGTACAGCATCGGGGAGCCCACAGTGCCATCCACCCTGGCAGAGGAGTTTACCTACAACCCCTTCATGAGAGTGAG___GGAGAAGACGGTGCAGCAGCACGCAGGTGAGACGGACCCGGTGACCACCATGCGGG	in-frame	NPRSAEGKQTEFIITAEILRELSMECGLNNRIRMIGQICEVAKTKKFEE|EKYSIGEPTVPSTLAEEFTYNPFMRVREKTVQQHAGETDPVTTMR	.
TALL_VC102	AP005273.1	YME1L1	+/+	-/-	11:64502581	10:27123699	splice-site	splice-site	translocation	downstream	downstream	2	0	0	21	361	low	.	.	.	TGATGGGgCATTTTTCTTGACCCTCTCCAATGTGAATTACTTCCTTTTATATGGAAGATTGTGAGCCCTTTGAAGACCTGATGGAAGCTATTGGACAGTAGAAGACACAGAGTGTACATGCAG|GAATTCTTTTAGTcGGACCCCCAGGGACTGGAAAGACACTTCTTGCCCGAGCTGTGaCG	.	.	.
TALL_VC102	GAS6-AS1	TFDP1	+/+	+/+	13:113815691	13:113610996	splice-site	splice-site	duplication	downstream	upstream	0	2	0	19	109	low	.	.	.	CGTGTAAGAAGTGCCTTTTGCCTCCCACCGTGATTCTGAGGCCTCCCCAACCATGTGCAATT|GCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTTAGTCCCGGGAAAG___GTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGG___GAAGCGCAACAGGAAAGGAGAGAAGAATGGCAAGGaCCTAC	.	.	.
TALL_VC102	GAS6-AS1	TFDP1	+/+	+/+	13:113815691	13:113633120	splice-site	splice-site	duplication	downstream	upstream	0	2	0	19	181	low	.	.	.	CGTGATTCTGAGGCCTCCCCAACCATGTGCAATT|GAAGCGCAACAGGAAAGGAGAGAAGAATGGCAAGGGCCTACGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTTCCTACAACGAAGTGGCAGACGAGCTGGTTGCGGAGTTCAGTGCTGCCGACAACCACATCTTACCAAACGAGTCA___GCTTATGACCAGAAAAACATAAGACGGCGCGTCTACGATGCCTTAAACGTGCTAATGGCC	.	.	.
TALL_VC102	NDUFA4	PHF14	-/-	+/+	7:10940016	7:10982372	splice-site	splice-site	inversion	upstream	upstream	1	0	1	837	152	low	.	.	.	AGTCCGTAGTGTCTCATTGCAGATAATTTTTAGCTTAGGGCCTGGTGGCTAGGTCGGTTCTCTCCTTTCCAG?CGGAGACtTCTGCCGCAAACATGCTCCGCCAGATCATCGGTCAGGCCAAGAAGCATCCGAGC|ATTCTGAAGGGAGTGGTAATGGAAGTGAAGATGCTTCAAAGGACAGTGGAGAAGGTTCCT	out-of-frame	MLRQIIGQAKKHPS|ilkgvvmevkmlqrtvekv	.
TALL_VC102	BRD1	TRABD	-/-	+/+	22:49775591	22:50193027	splice-site	splice-site	inversion	upstream	upstream	0	1	1	593	1566	low	.	.	.	CACATGCAGACCAAGTCTGATGAGAAGCTGTTCCTCGTTCTCTTTTTTGATAATAAGAGAAGTTG|GCTCCCCACAGGTGCAGGAAGCCGCCGCCCAGCCATGGACGGGGAGGAGCAGCAGCCACC...GATGAAGCTGAAGCGGCGGCGTCAGCGGCCCAACCTGCCGCGCACTGTGACCCAGTTGGTGGCTGAGGACGGGAGCAGGGTGTACGTGGTGGGGACAGCCCACTTCAGCGACGACAGCAAGAGGG	in-frame	HMQTKSDEKLFLVLFFDNKRSw|lptgagsrrpaMDGEEQQP	.
TALL_VC102	PPP6R2	SBF1	+/+	-/-	22:50432329	22:50468461	splice-site	splice-site	inversion	downstream	downstream	2	0	0	201	184	low	.	.	duplicates(2)	AGGGTGGAGCCTCCGCATGAGAACGGGAACCGGAGCCTGGAGACTCCCCAGCCGGCCGCCAGCCTCCCTGACAACACAATGGTGACCCAC___CTGTTCCAGAAGTGCTGCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|GGAGTGGGGAAGGCCAGGGCCAGATTCTGCAGCGCTTCCCAGAGAAGGACTGGGAGGACAACCCATTCC	out-of-frame	RVEPPHENGNRSLETPQPAASLPDNTMVTHLFQKCCLVQRILEAWEANDHTq|ewgrpgpdsaalpreglggqpi	.
TALL_VC102	SAFB2	KDM4B	-/-	+/+	19:5591748	19:5039836	splice-site	splice-site	inversion	upstream	upstream	1	0	0	392	44	low	.	.	.	CG___ACGAGATGATGCCTATTGGCCAGAAGGAAAGCGTGTGGCAATGGAGGACCGATATCGTGCAGACTTTCCCCGGCCAGACCACCGCTTTCACGACTTCGATCATCGAGACCGGGGCCAGTACCAGGACCACGCCATCGACAG___GCGGGAGGGTTCGAGGCCAATGATGGGAGACCACCGGGATGGGCAG|ATCATCCCCCCGAAGGAGTGGAAGCCGCGGCAGACGTATGATG	in-frame	RRDDAYWPEGKRVAMEDRYRADFPRPDHRFHDFDHRDRGQYQDHAIDRREGSRPMMGDHRDGQ|IIPPKEWKPRQTYD	.
TALL_VC102	SAFB2	KDM4B	-/-	+/+	19:5590278	19:5047476	splice-site	splice-site	inversion	upstream	upstream	0	0	0	311	43	low	.	.	inconsistently_clipped(1)	CGACAAGAGGCTGAGTGAAGGCCGGGGGCTGCCCCCTCCCCCCAG|GACGTGGCCCAGTGGAACATCGGGAGCCTCCGGACCATCCTGGACATGGTGGAGCGCGAGTGCGGCACCATCATCGAGGGCGTGAACACGCCCTACCTGTACTTCGGCATGTGGAAG	out-of-frame	DKRLSEGRGLPPPPr|twpsgtsgasgpswtwwsasaapssra*	.
TALL_VC102	TTYH3	C7orf50	+/+	-/-	7:2632278	7:1010143	splice-site	splice-site	inversion	downstream	downstream	0	1	0	52	198	low	.	.	duplicates(1)	CCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|GGCGAAGCTGTGCTCAGGCCCGGGCTGGACGCAGAGCCAGAGCTGTCCCCAGAGGAGCAGAGGGTCCTGGAAAGGAAGCTGAAAAAGGAACGGAAGAAAGAGGAGAGGCAGCGTCTGCGGGAGGCAGGCCTTGTGGC	in-frame	HFDLSWEATSSQFRPEDTDYQQ|GEAVLRPGLDAEPELSPEEQRVLERKLKKERKKEERQRLREAGLV	.
TALL_VC102	TTYH3	C7orf50	+/+	-/-	7:2656534	7:1010143	splice-site	splice-site	inversion	downstream	downstream	0	1	0	57	198	low	.	.	.	GGCGTGGAGGGCCTCATCTACCTGGCCCTCTTCTCCTTCGTCACAGCCCTCATGTTCAGCTCCATCGTCTGCAGCGTCCCGCACACCTGGaAGCAAAAGAG|GGCGAAaCTGTGCTCAGGCCCGGG...AAGCTGAAAAAGGAACGGAAGAAAGAGGAGAGGCgGCGTCTGCGGGAGGCAGGCCTTGTGGCCCAGCACCCGCCTGCCAGGCGCTCGGGGGCCGAACTGGCCCTGGACTACCTCTGCAG___ATGGGCC	out-of-frame	GVEGLIYLALFSFVTALMFSSIVCSVPHTWkQKr|aklcsgp	.
TALL_VC102	SYNE2	MOB3A	+/+	-/-	14:63853143	19:2078679	splice-site	splice-site	translocation	downstream	downstream	1	0	0	14	124	low	.	.	duplicates(1)	CTCAGCTGCGCCCAGAGCCTTCGGCCGGACCTGAAAAAGCGAGAGGGAGAGCGAGCAAAAGGCGCGATCCAGAGAGCCAGGCAAGCGGGGCGCCGACCTCGGGCGGCCCCGGCCCGCGCCCTTGCCCCTCGGCCGGGCGGACG|GTCCGCGGGAGAGCTGTGG	.	.	.
TALL_VC102	CPT1A	ORAOV1	-/-	-/-	11:68794804	11:69673321	splice-site	splice-site	duplication	upstream	downstream	1	0	0	149	42	low	.	.	duplicates(1)	AGTACATCTACCTCCGAGGACGAGGGCCGCTCATGGTGAACAGCAACTATTATGCCATG___GATCTGCTGTATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCAACGCCATCCATGCCATCCTGCTTTACAGGgGCAAACTGGACCGGGAGGAAATCAAACCA|GTTTCATGGGGAAGGGTATgGGGAAGGC	out-of-frame	YIYLRGRGPLMVNSNYYAMDLLYILPTHIQAARAGNAIHAILLYRgKLDREEIKP|vswgrvwgr	.
TALL_VC102	PANK4	PRKCZ	-/-	+/+	1:2526464	1:2155995	splice-site	splice-site	inversion	upstream	upstream	0	1	0	48	460	low	.	.	duplicates(2)	CGACGAGATCTTCCGCAACCTGGAGAACGCCAAGCGCTTCGCCATCGACATAG|GATATTGACTGGGTACAGACAGAGAAGCACGTGTTTGAGCAGGCATCCAGCAACCCCTTCCTGGTCGGATTACACTCCTGCTTCCAGACGACAAGTCG___GTTGTTCCTGGTCATTGAGTACGTCAACGGCGGGGACCTGATGTTCCAC	out-of-frame	DEIFRNLENAKRFAIDI|gy*	.
TALL_VC102	FBRSL1	NOC4L	+/+	+/+	12:132508350	12:132151258	splice-site	splice-site	duplication	downstream	upstream	0	1	0	182	352	low	.	.	.	CTGGAGGCAGGCAGCCCCGGGCAGGACCTCGAACCCGCCTGCGATGGGGCGAGAAAGGTCCCACTGCAGCCCTCCAAGCAG|GGAGTACCCTGACTTCTACCGGAAGCTCTACGGCCTCTTGGACCC...GGTGGTGGGGGCTAGCAGTCCGGGCCCTGTCTCACAACCACTGCCCTGCCCAGCCACCTCCCCGCCTACCTGGTGGCCGCCTTCGCCAAGCGGCTGGCCCGCCTGGCCCTGACGGCTCCCCCTGAG	out-of-frame	LEAGSPGQDLEPACDGARKVPLQPSKQ|gvp*	.
TALL_VC102	NDEL1	TRAPPC9	+/+	-/-	17:8460160	8:139910300	splice-site	splice-site	translocation	downstream	downstream	0	1	0	133	59	low	.	.	.	CAAAGTTCTCTCGATCAGGGCATACATCTTTCTTCGACAAAGG|AATGGCTATTCAAGTGGACAAGTTCAACTTTGAGAGTTTCCCGGAGTCCCCTGGGGAGAAGGGGCAATTTGCAAACCCCAAGCAGCTGGAGGAAGAGCGGCGGGAAGCCCGAGGCCTGGAGATCCACAGCAAGCTGGGCATCTG___CT	in-frame	KFSRSGHTSFFDKg|MAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKLGIc	.
TALL_VC102	CAMK1D	CDC123	+/+	+/+	10:12553356	10:12250311	splice-site	splice-site	duplication	downstream	upstream	1	0	0	58	532	low	.	.	.	C___CGGGGCCTTTTCCGAAGTGGTTTTAGCTGAAGAGAAGGCAACTGGCAAGCTCTTTGCTGTGAAGTGTATCCCTAAGAAGGCGCTGAAGGGCAAGGAAAGCAGCATAGAGAATGAGATAGCCGTCCTGAGAAA|AAGAGAAATCAGCAGGAGGACGACTGATGAGCGTgCTGGAACTGGAGAAGAGGAGGCCCCGCCCC	in-frame	RGLFRSGFS*REGNWQALCCEVYP*EGAEGQGKQHRE*DSRPEK|KRNQQEDD*	.
TALL_VC102	GPBP1	ADAMTS6	+/+	-/-	5:57176400	5:65460338	splice-site	splice-site	inversion	downstream	downstream	0	1	0	232	127	low	.	.	.	GGAAAATAAAGATTACAGAGAAAAAACCAACACCTTCCTGTGCAGTCCTGTTGGAATTT|CATGGTGTTATTGCTACAGAAGATGAAGAGTATTTTATCGAACCTTTAAAGAATACCACAGAGGATTCCAAGCATTTTAGTTATGAAAATGGCCACCCTCATGTTATTTACAAAAAGTCTG	.	.	.
TALL_VC102	ADAMTS6	GPBP1	-/-	+/+	5:65481343	5:57175448	splice-site	splice-site	inversion	upstream	upstream	0	1	0	189	199	low	.	.	.	AGGGAGTACGTGAGTCGTCCAGTGCAATCTCTATTGTCTGAAACTTACTTTTTATCAGAATTTGAAGATGAAAACG|GTGATTGAATTACTCAGATATGAAGATCATCATCTAGGTTTTGTGTAAAAGGCCCTGGATATTTTAAGTGGCCATTTTGGATTTACAGTGTTTTTGGATAATTTTGCCCCAGAAGTTTATTAAAATTGGCAAGAATCGTCTGTGAAGTGAATTGATAGTAGTG	.	.	.
TALL_VC102	ING5	SRSF2	+/+	-/-	2:241712071	17:76734562	splice-site	splice-site	translocation	downstream	downstream	0	1	0	682	1434	low	.	.	.	CGGGGCCGAGGCAGGAGGACATCAGAGGAAGACACACCAAAGAAAAAGAAGCACAAAGGAGG|GCGCAGTTGTGTAGCAGTTGAGTAATGCTGGTTAGCTGTTAAGGTGGCGTGTTGCAGTGCAGAGTGCTTGGCTGTTTCCTGTTTTCTCCCGATTGCTCCTGTGTAAAGATGCCTTGTCGTGCAGAAACAAATGGCTGTCCAGTTTATTAAAATGCCTGACAACTGCACTTCCA	out-of-frame	RGRGRRTSEEDTPKKKKHKGg|rscvave*	.
TALL_VC102	UVSSA	SEMA4D	+/+	-/-	4:1355245	9:89381346	splice-site	splice-site	translocation	downstream	downstream	0	1	0	109	389	low	.	.	.	AGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|GGCAACAGGTTTGTCTATGCTGGCTCTAACTCGG...GTGCTGGCGCGGGACCCCTACTGCGCCTGGAGCCCGCCCACAGCGACCTGCGTGGCTCTGCACCAGACCGAGAGCCCCAGCAG___GGGTTTGATTCAGGAGATGAGCGGCGATGCTTCTGTGTGCCCG	in-frame	RAIDLKAELELVLRKYKELDIEPEGGERhR|GNRFVYAGSNS	.
TALL_VC102	UVSSA	SEMA4D	+/+	-/-	4:1348189	9:89379629	splice-site	splice-site	translocation	downstream	downstream	0	1	0	47	608	low	.	.	.	AGAAACTTTCGAAGTTGGTAGAAGAGCTCACAACTTCAGGAGAACCCCGACTAAATCCTGAGAAAATGAAGGAACTGAAGAAAATTTGCAA|ATAAAAGTAAAGGAAGTTACCGGCAGCATTTTTTC...GCACGGTGGCACAGCGGAACTGAAATGCTCCCAAAAATCCAACCTGGCCCGGGTCTTTTGGAAGTTCCAGAATGGCGTGTTGAAGGCCGAGAGCCCCAAGTACGGTCTTATGG-CAGAAAAAACTTG	out-of-frame	KLSKLVEELTTSGEPRLNPEKMKELKKICk|*	.
TALL_VC102	LDLR	DNM2	+/+	+/+	19:11113762	19:10829036	splice-site	splice-site	duplication	downstream	upstream	1	0	0	68	419	low	.	.	.	CAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAG___CACCCAGCTTGACAGAGCCCACGGCGTCTCTTCCTATGACACCGTCATCAGCAGAGACATCCAGGCCCCCGACGGGCT...AGAGGAAAACGTTATTCAGGGAGAACGGCTCCAAGCCAAGGGCCATCGTGGTGGATCCTGTTCATGG|ACGAAGGCCTTCATCCACCACGAGCTGCTGGCCTACCTATACTCCTCGGCAGACCAGAG	out-of-frame	RKTLFRENGSKPRAIVVDPVHg|rrpssttscwptytprqtr	.
TALL_VC102	GRAMD4	BRD1	+/+	-/-	22:46637960	22:49824331	splice-site	splice-site	inversion	downstream	downstream	1	0	0	41	65	low	.	.	.	GGTACCGCGGACCTCGCCCCGGGACAGCGAGGAGCTGAGGGACCCT___GCTGGTCCAGGGACCCTCATCATGGCCACAGGAGTCCAGGACTTTAACCGGACAGAGTTTGATCGACTGAATGAGATCA...ACCTGGAAATTGCCTTATTGGAAAAACATTTCTTAC|GTAATCATTACCAAATGAGGAGGAAAGGACGATGTCATCGAGGCTCTGCAGCGAGGCATCCTTCTTCCCCATGCAGTGTTAAACACcCCC	in-frame	LEIALLEKHFL|rnhyqMRRKGRCHRGSAARHPSSPCSVKHp	.
TALL_VC102	GRAMD4	BRD1	+/+	-/-	22:46675552	22:49799119	splice-site	splice-site	inversion	downstream	downstream	0	1	0	446	325	low	.	.	duplicates(2)	GGAGAA___TTACTTGTGCTTCGAAAGCTCCAAATCTGGGTCCTCAAAGAGGAACAAAGTCATCAAGCTAGTGGACATCACGGACATCCAGAAG|AGAGAAAATGATGAGGAGATGAAGGCTGCCAA...GCGCTCGCCTGCTGATCGAGCTGCTGCGCAAGCGGGAGAAGCTCAAGCGTGAGCAG___GTGAAGGTGGAGCAGGTCGCCATGGAGCTGCGGCTGACCCCGCTGACGGTGCTGCTGCGCTCAGTGCTGG	in-frame	ENYLCFESSKSGSSKRNKVIKLVDITDIQK|RENDEEMKAA	.
TALL_VC102	BRD1	PPP6R2	-/-	+/+	22:49804204	22:50434966	splice-site	splice-site	inversion	upstream	upstream	1	0	0	278	148	low	.	.	duplicates(1)	CGCCCGCTTGCCGGGCTCCCGCGGCCGCGGCGCCCCGAAG___GTTAAATAGGATTGCGAATCAGGTGGCCATTCAGCGGAAGAAGCAGTTTGTGGAGCGAGCCCACAGCTACTGGCTGCTCAAGCGGCTGTCCAGGAACGGGGCCCCCCTGCTGCGGCGGCTGCAGTCCAGCCTGCAGTCTCAGCGAAGCTCACAGCAG|GGCAGCGGGTGGCATGAGACGTGGGAACATGGGCC	out-of-frame	VK*DCESGGHSAEEAVCGASPQLLAAQAAVQERGPPAAAAAVQPAVSAKLTA|gqrva*	.
TALL_VC102	PPP6R2	BRD1	+/+	-/-	22:50432329	22:49799119	splice-site	splice-site	inversion	downstream	downstream	1	0	0	201	325	low	.	.	.	CGGGAACCGGAGCCTGGAGACTCCCCAGCCGGCCGCCAGCCTCCCTGACAACACAATGGTGACCCAC___CTGTTCCAGAAGTGCTGCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|AGAGAAAATGATGAGGAGATGAAGGCTGCCAAAG	out-of-frame	GNRSLETPQPAASLPDNTMVTHLFQKCCLVQRILEAWEANDHTq|ekmmrr*	.
TALL_VC102	BTAF1	PTEN	+/+	+/+	10:91966757	10:87952118	splice-site	splice-site	duplication	downstream	upstream	0	1	0	281	1060	low	.	.	duplicates(1)	TGGCCTTTTTTGCATCACACTATATCATCAGTTCGAAGAGCAGCATTGGAAACTCTGTTTACGTTATTATCAACACAGGACCAG|GGAGTAACTATTCCCAGTCAGAGGCGCTATGTGTATTATTAT...ATTCCAATGTTCAGTGGCGGAACTTGCA___ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACACGACGGGAAGACAAGTTCATGTACTTTGAGTTCCC	in-frame	WPFLHHTISSVRRAALETLFTLLSTQDQ|GVTIPSQRRYVYY	.
TALL_VC102	BTAF1	PTEN	+/+	+/+	10:91997751	10:87952118	splice-site	splice-site	duplication	downstream	upstream	0	1	0	220	1060	low	.	.	.	AGACAGACAGTGTGAGATTCATGGCCACGCAGTGCTTTGCAACGCTAATTAGACTCATGCCACTTGAG|GGAGTAACTATTCCCAGTCAGAGGCGCTATGTGTATTATTATAGCTACCTGTTAA...GGATTATAGACCAGTGGCACTGTTGTTTCACAAGATGATGTTTGAAACTATTCgAATGTTCAGTGGCGGAACTTGCA___ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCC	in-frame	TDSVRFMATQCFATLIRLMPLE|GVTIPSQRRYVYYYSYLL	.
TALL_VC102	BRD1	SELO	-/-	+/+	22:49775591	22:50206317	splice-site	splice-site	inversion	upstream	upstream	1	0	0	593	246	low	.	.	.	GTGTGGGCCAAGTGCAGCGGCTACCCCTCCTACCCGGCACTG___ATCATCGACCCCAAGATGCCCCGTGTGCCTGGCCACCACAACGGCGTCACCATCCCGGCCCCACCCCTGGACGTGCTGAAGATT...GACCAAGTCTGATGAGAAGCTGTTCCTCGTTCTCTTTTTTGATAATAAGAGAAGTTG|ACAGGCCGACGGTCGCAAGGTCCTACGGTCAAGCATCCGGGAGTTTCTATGCAGCGAAGCCATGTcCCA	out-of-frame	TKSDEKLFLVLFFDNKRS*|QADGRKVLRSSIREFLCSEAMs	.
TALL_VC102	BRD1	SELO	-/-	+/+	22:49775591	22:50210181	splice-site	splice-site	inversion	upstream	upstream	1	0	0	593	707	low	.	.	.	GCCAAGTGCAGCGGCTACCCCTCCTACCCGGCACTG___ATCATCGACCCCAAGATGCCCCGTGTGCCTGGCCACCACAACGcCGTCACCATCCCGGCCCCcCCCCTGGACGTGCTGAAGcTTGGGG...ATGCAGACCAAGTCTGATGAGAAGCTGTTCCTCGTTCTtTTTTTTGATAATAAGAGAAGTTG|GTGACGCGGCGCACGGCGCGGATGGTGGCCGAGTGGCAGTGTGTGGGCTTCTGCCACGGCGTG	out-of-frame	MQTKSDEKLFLVLFFDNKRSw|*	.
TALL_VC102	SELO	BRD1	+/+	-/-	22:50210911	22:49799119	splice-site	splice-site	inversion	downstream	downstream	1	0	0	718	325	low	.	.	.	CCGAGTTCCAAAGGCACTACCTGCAGAAGATGCGCAGGAAGCTGGGCCTCGTGCAGGTGGAGCTGGAGGAAGACGGGGCGCTGGTGTCCAAGCTCCTGGAGACCATGCATCTGACCG|AGAGAAAATGATGAGGAGATGAAGGCTGCC	out-of-frame	EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT|erk*	.
TALL_VC102	REL	XPO1	+/+	-/-	2:60881850	2:61526521	splice-site	splice-site	inversion	downstream	downstream	1	0	0	385	975	low	.	.	.	CAGGGGTTGGGAAGGTGTGAGCCGCAAACCCAGCGGAGGGCGGGAAGAAGGAGGAGGCCTCTAGGGTGGTCGGGGGACTGGGGGCCCCGCCGGCAGAGGTCCCTCGGCCTCCTGACTGACTGACTG...CGGCCAGGACGCTGGGAGCTGCCTGCGGGAAGGTGCGGGGAGCGGAGCCATGGCCTCCG|CAAAGAATGGCTCAAGAAGTACTGACACATTTAAAGGAGCATCCTGATGCTTGGACAAGAGTCGACA	out-of-frame	MAS|akngsrstdtfkgas*	.
TALL_VC102	REL	XPO1	+/+	-/-	2:60920109	2:61482539	splice-site	splice-site	inversion	downstream	downstream	0	1	0	202	3501	low	.	.	.	AAGCAAAGAAACAAAAGACAACTCTGCTTTTCCAGAAACTGTGCCAGGATCACG|GTTTAACAATGCATGCATCAATTCTTaCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGTTAACAACCgAATCTTTCTTCAGGAATATGTGGCTAATCTCCTgAAGTCGGCCTTCCCTCACCTACAAGA___TG	in-frame	AKKQKTTLLFQKLCQDH|gLTMHASILtYMFNLVEEGKISTSLNPGNPVNNrIFLQEYVANLLKSAFPHLQD	.
TALL_VC102	UBN2	ZC3HAV1	+/+	-/-	7:139273410	7:139074030	splice-site	splice-site	inversion	downstream	downstream	0	1	0	23	502	low	.	.	.	CCAGGAAAACGTGTCATAGGACCAAGAAAGAAATTCCACTGGGATGACACTATCAG|CTGTTCTGTAGGAAGTTATACAATCAATTTTCGGGTAATGAGTTGTGATTCCTTTCCCATCCGACGCCTC...CTATCAATCCTGTCCGAGGGGAGTTGTGCCATTTCAGGCGGGCTCACGGAACTATGAGCTGAGTTTCCAAG___GGATGATTCAGACAAACATAGCTTCCAAAACTCAAAAGGATGTCATCAGAAG	in-frame	PGKRVIGPRKKFHWDDTIs|CSVGSYTINFRVMSCDSFPIRR	.
TALL_VC102	ZC3HAV1	UBN2	-/-	+/+	7:139109024	7:139237005	splice-site	splice-site	inversion	upstream	upstream	1	0	0	370	15	low	.	.	.	CGGGATCACCCGATCGGTGGTGGCCACCACTCGAGCCCGGGTCTGCCGTCGCAAGTACTGCCAGAGACCCTGCGATAACCTGCATCTCTGCAAACTCAACTTGCTGGGCCGGTGCAACTATTCGCAGTCCGAGCG|AAGAAGCTCATTCACACAGAAGACCCATTTAATGATGAACATCAGG	out-of-frame	GITRSVVATTRARVCRRKYCQRPCDNLHLCKLNLLGRCNYSQSEr|rssftqkthlmmni	.
TALL_VC102	BTBD2	LLfos-48D6.2	-/-	+/+	19:2013547	19:2334602	splice-site	splice-site	inversion	upstream	upstream	1	0	0	16	533	low	.	.	.	GCTCGCAGCGCATCCCCGCGCACAG___GGACCCTGCCACTCCCACCCGCACCCCTGTGCGCCAAGACCCCTAGGCCTTGCTCCCTGCGTCCTCCCTGCTGCCTCCAGACCCAGTGACCCCCACCGG...ACCACCCACCTCCAGCTCCGCCACTGCCAGGCTCTGGACCCTGGACTCTGCAGAAG|GTGGCCTGTGAGTACGGCATGGTGCACGTGGTCTCCCAGGCCGGGGGCCCCGAAGGCAAAGACTACTGCA	.	.	.
TALL_VC102	SLC12A7	NKD2	-/-	+/+	5:1111868	5:1032152	splice-site	splice-site	inversion	upstream	upstream	0	1	0	59	272	low	.	.	.	GCGGGGACGAGACTGCCGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGG|GAGCTGCCCAATGGGGACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTACAGG___TGGCACTCCCCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGGGACAACTCCTCAGCGCAGATGACGGAG	out-of-frame	GDETAERTEAPGTPEGPEPERPSP|gaaqwgpqggafpggpvsptggtpr*	.
TALL_VC102	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1065478	splice-site	splice-site	inversion	downstream	downstream	1	0	0	257	122	low	.	.	.	GTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|AACATACGGTCCCTAATGAGCACAGAGAAGACCAAGGGCTTCTGCCAGCTGGTGGTCTCGTCCAGCCTGCGGGATGGCATGTCCCACCTGATCC	in-frame	SKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|NIRSLMSTEKTKGFCQLVVSSSLRDGMSHLI	.
TALL_VC102	PHRF1	IFITM2	+/+	+/+	11:611082	11:308231	splice-site	splice-site	duplication	downstream	upstream	0	1	0	206	7710	low	.	.	.	ATCAAGCCCTTCTACCAGAAGAGGGAGGTGACCAAGGAGGAGTACAAGGACATCCTGCGCAAGGCCGTGCAGAAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTAT...GAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGAC	out-of-frame	IKPFYQKREVTKEEYKDILRKAVQK|rpasqlrdaqggagsg	.
TALL_VC102	PHRF1	IFITM2	+/+	+/+	11:601701	11:308231	splice-site	splice-site	duplication	downstream	upstream	0	0	0	108	7710	low	.	.	mismatches(1)	CTGATGTGGTGCCCACCACCAGCAGGCTTCGGCCTCGAGCAGGTAGGACCCGGGCGATAGCCAGGACACGGCAGAGTGAGAGAGTGAGAGCAACCGTGAACCGGAACCGGATCTCCACGGCCAGG...AAAGAAAACCCCGTCCGGACCATCCGCAAAAAGTAAGAGCTCAGCGACAAGATCTAAGAAACGCCAACATCGAGTGAAGAAGAGAAGAGGGAAGAAGGTAAAG|CGGCCAGCCTCCCAACcACGAG	out-of-frame	KKTPSGPSAKSKSSATRSKKRQHRVKKRRGKKVK|rpasqpr	.
TALL_VC103	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	52	59	4	805	667	high	.	.	duplicates(349),low_entropy(15),mismappers(9),mismatches(37)	GGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTCTGGGCCC	out-of-frame	GLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL_VC103	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	13	0	127	144	high	.	.	duplicates(32),mismatches(7)	G___...CTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGC?CGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCC	.	.	.
TALL_VC103	C22orf24	EIF4ENIF1	-/-	-/-	22:31945233	22:31488745	splice-site	splice-site	deletion	upstream	downstream	1	1	0	118	64	high	.	.	duplicates(2)	CCCCCAGGCGTGGGAAGATGGAACCAGAACAATTCGAACGAGCAGAGCAAAACAGATCGGAATTGCAGACTTCAGGTCGTGGCAGAGAAAACCAGCTGAGACAGGGCGCCACTTACTAG|GTGCAGAGCATTGTAGACCAAGGAGCCATGGATAGGAG	.	.	.
TALL_VC103	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	8	12	0	167	79	medium	.	.	duplicates(53)	GCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGC	.	.	.
TALL_VC103	FP236383.8	bP-2189O9.2(105672),MIR3648-1(351)	+/+	./+	21:8391168	21:8986648	exon	intergenic	deletion	downstream	upstream	82	0	0	341	144	low	.	.	duplicates(216),low_entropy(1),mismappers(10),mismatches(32)	GGCGGTTCTCGGTGGGGGCCGAGGGCCGTCCGGCGTCCCAGGCGGGGCGCCGCGGGACCGCCCTCGTGTCTGTGGCGGTGGGATCCCGCGGCCGTGTTTTCCTGGTGGCCCGGCCGTGCCTGAG|GTTTCTCCCCGAGCCGCCGCCTCTGCGGGCTCCCGGGTGCCCTTGCCCTCACGGT	.	.	.
TALL_VC103	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	6	0	88	62	low	.	.	duplicates(12),mismatches(1)	AGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGC	.	.	.
TALL_VC103	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	3	0	54	58	low	.	.	duplicates(24),low_entropy(4),mismappers(3)	GAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTC	.	.	.
TALL_VC103	KHSRP	KHSRP	-/-	-/-	19:6415140	19:6416406	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	2	0	3	667	271	low	.	.	duplicates(9)	TGGCCACCGGAGGGGGTCCAGGAGCTCCCCCAGGCTCCCAGCCAGACTACAGTGCCGCCTGGGCGGAATATTACAGACAGCAGGCCGCTTACTACGGACAGACCCCAGGTCCTGGCGGCCCCCAGCCGCCGCCCACGCAGCAGGGACAGCAGCAGG|GTCCTCTCTGCCCAGTTGGACCAGGCCCAGGTGGCCCAGGCCCTGCTGGCCCAATGGGGCCCTTCAATCCTGGGCCCTTCAACCAGGGGCCACCCGGGGCTCCCCCACA___TGCCGGGGGGCCCCCTCCTCACCAGTACCCACCCCAGGGCTGGGGCAATACCTACCCCCAGTGGCAGCCGCCTGCTCCTCATGACCCAA___GCAAAGCAGCTGCAGCGGCCGCGGACCCCAACGCC	in-frame	ATGGGPGAPPGSQPDYSAAWAEYYRQQAAYYGQTPGPGGPQPPPTQQGQQQ|gPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPSKAAAAAADPN	.
TALL_VC103	CASC3	LPHN1	+/+	-/+	17:40140498	19:14147920	5'UTR	3'UTR	translocation/5'-5'	downstream	upstream	0	0	3	76	83	low	.	.	.	ACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGCGGGATGGCCGAGCGCCGCACGCGTAGCACGCCGGGACTAGCTATCCAGCCTCCCAGCAGCCTCTGC...|...TGGGGCGTGGGAGGTGGGGAGGAGGCCCGAATGGACAGAAAGTTGAGGATAAGAGAAGAGGAACATAGAGACAGCCAGAAAGACATGGGGAAAGAGTGTTGGAGACAGAGAAAGGGGAAGGC	.	.	.
TALL_VC103	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	1	2	0	19	24	low	.	.	duplicates(5)	AGtGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGG	.	.	.
TALL_VC103	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	9	4	low	.	.	.	CCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGG	.	.	.
TALL_VC103	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	1	0	1	21	17	low	.	.	duplicates(5),low_entropy(1),mismatches(1)	GGGCCTGACCCTTTTGGAACGGGGGTTTTAAGATTCATAATCGACAAA___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTAC	.	.	.
TALL_VC103	IARS	FLT1	-/-	-/-	9:92268238	13:28493296	CDS	intron	translocation	upstream	downstream	0	0	2	88	5	low	.	.	duplicates(3)	AGTGGAGAACATGGTGGACCAGCTCCTAAGGAACAATGACCTGTGCTACTG___GGTCCCAGAGTTGGTACGAGAAAAACGATTTGGAAATTGGCTGAAAGATGCACGTGACTGGAC...|...AAATACATTTTTTGTTTTGAAAAGTCACTTGTATTAAAATATAATTGCTTAGAGAATTTAAATACCTCACTCGACTATTATGTAAAGATAAATCTAGCTAAATTACATGAATCTAAAATTACGGAG	.	.	.
TALL_VC103	ABI2	NCAPD3	+/+	-/-	2:203428871	11:134154717	3'UTR	intron	translocation	downstream	downstream	0	0	2	65	82	low	.	.	duplicates(5)	GGGTGGTCACTGTGATGTTGGGCCAGCTCCTGTTCAGGTCCAGAGCTGCTAACGTGGGTTCTACTCAGTCCCAGTGACTTGGCCAGAATAGAGCTTTGCCAGGTAACTGCCCTGTGCTAGGTGAA...|...GGTTCAGTGGTACCAGCAAGCAGCTGCCCAGCCCGTGCTGTTCCCGGGAGTGTGCTGGTGGCAGCTTATGCACTGGGTACAGCACCACCCAGGAGGGGCGAGGCTGCACCACCCAGGAGGGGC	.	.	.
TALL_VC103	DCAF5	ZFP36L1	-/-	-/-	14:69152765	14:68790492	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	71	207	low	.	.	duplicates(4)	GGCCTGGGGGGCAGCATGAGGTCAGTGGTGGGCTTCTTGTCCCAGCGGGGCTTGCATGGGGACCCCCTGCTCACTCAGGACTTTCAGAGG?GACGCCTGCGGGGCTGCAGAAACCTCTACAAGAAGGACCTCCTCGGCCACTTCGGCTGTGTCAATGCCATTGAATTCTCCAACAATGGAGGCCAGTGGCTGGTCTCAG|GGTAACAAGATGCTCAACTATAGTGCTCCCAGTGC	out-of-frame	GLGGSMRSVVGFLSQRGLHGDPLLTQDFQR?RLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVS|g*	.
TALL_VC103	DNAJC13	MCM4	+/+	+/+	3:132465996	8:47977621	CDS	3'UTR	translocation	downstream	upstream	0	0	2	0	212	low	.	.	duplicates(2)	G___GAAGGTGATAAAGAAATTGCTACAAAAATGCAGGAGCTTGCCCTAAGTGAAGGTGCCTTACCTCGACACTTGCATACTGCGATGTTTACAATAAGCTCAGATCAAAGGATGCTTACAAATAG___AC...|...GCTACTTTTTGTATTTTTTGGTAGAGACGGCTTCGCCACGTTGCCCAGGCTGCAAGCGATATGCCTAGGCTCAAGCGATCTGCCCACCTCAACTTCCGGAAGTGCTGAGATTACAGGTGTGAGCC	.	.	.
TALL_VC103	PTPRE	TMEM263	+/+	+/+	10:128085230	12:106972608	3'UTR	3'UTR	translocation	downstream	upstream	2	0	0	39	71	low	.	.	duplicates(1)	CCCCAGGACGCAAGACTCTCCCCTCCACTGTCCGGGACAGCGTTCGCCCTTTAGCGGGGAGGTCATTACAGCCTCATGGCCTCTACCAAGGCCCCAGATCACAGGATCTCCTGGGCCTTGGAGCACCTCACGCTGGG|GTCAGGGATTTGAATTGTTTGATTATGGATGATAAATGTGTCATATCTTATTAATATGTCTCATGTCTCGTTCCTTCTTAATATGATTTAGCTGG	.	.	.
TALL_VC103	SLC6A6	SH3GLB2	+/.	-/.	3:14403438	9:129009211	intron	CDS	translocation	downstream	downstream	2	0	0	22	101	low	.	.	duplicates(3)	.	.	.	.
TALL_VC103	ZNF844	SLC11A2	+/+	-/-	19:12064876	12:51010766	splice-site	splice-site	translocation	downstream	downstream	1	0	0	97	46	low	.	.	duplicates(2)	GCCGGGTGAGGTTGGCACCCCGTTTTTCCTGCTCTGAGAGGGACCGGTTGCCACCGCCATACTTCTGTCGCCCTGTCGTCTGTGTTGTGACTGCTTTGGACGTGGGAGTCACCTGAAAGCCAGGAAATG|AATCATATTCTAAGAACTCAGCCACTCAGGTATCCACCATGGTGCTGGGTCCT	out-of-frame	M|nhilrtqplryppwcwv	.
TALL_VC104	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	7	29	0	150	111	high	.	.	duplicates(30)	GTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCT	.	.	.
TALL_VC104	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	136	111	low	.	.	.	GTGGGGGTGGCTGGACTCTGCTCAGAGGAACCTGTACAGGGATGTGATGCTGGAGAATTATAGGAACATGGCTTCCCTGG___TGGGACCATTCACCAAACCTGCTCTGATCTCCTGGTTGGAAGCA...ATGGGGCCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGA	out-of-frame	WGLNMQAAQPKGNPVAAPT|gmsrgqfgqgqepldmffwvne	.
TALL_VC104	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	4	8	0	49	83	high	.	.	duplicates(12),mismatches(1)	GCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTtTTGTTTTGGgCATTTTTG...GGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCC	.	.	.
TALL_VC104	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	6	4	0	58	66	high	.	.	duplicates(14),mismatches(2)	CCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCT	.	.	.
TALL_VC104	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	58	53	low	.	.	duplicates(3)	GTtGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGG	.	.	.
TALL_VC104	RNF216	UNC93B2	-/-	-/+	7:5641154	7:6858058	splice-site	intron	inversion/5'-5'	upstream	upstream	0	4	1	145	45	high	.	.	duplicates(3)	GCCCAGATGTGCTACCTCTGTCGAGTTTCTATTAATGGATATGAaCATTTCTGCCAACATCCCCGCTCACCAGGAGCCCCTTGCCAGGAGTGTTCAAGATGCTCTCTCTGGACCGATCCCACT|GTGTGCAGTGCCAAGCTTGCAGGCGCTGTTTCTCCTCCTCAGCCGGGACTAGAGAGATCCAACTGTTTGCAGCTGCCAACTCTGCAAATCAAACCTGAAGCTAAGCATGGAGAGGGGGGCTTCCTTTCCG___CCAACCACCCACAGATAGCCATAAAGCCACCTGCCCTGCCCCCCCCC[c]AGTGCCCACAGCTATACTCACTGCTGAGTCCAGTCTTGTTCAGGGCGCTGCCCACACCCC...AAGAGGATGAAGGTGAGCAGCAGGTGCACCCCTTCTCCAGCCACGAGGGGCACCGGGTGTGGCAGCCACAGGCCCAGCAGAACCAGGAGTGAGGCGGCTGAGGCGCCCAGGCTGTAAGCCACGgGGA	out-of-frame	AQMCYLCRVSINGYeHFCQHPRSPGAPCQECSRCSLWTDPT|vcsaklagavsppqpglersnclqlptlqikpeakhgeggflsanhpqiaikppalpppqcpqlysllspvlfralptp	.
TALL_VC104	RNF216	RP11-740N7.3(2281),ALG1L5P(20900)	-/-	./+	7:5641154	7:6902904	splice-site	intergenic	inversion	upstream	upstream	4	0	1	145	82	high	.	.	duplicates(4)	GTGGGACTGGCCTCATCAAATCTGAAGGCTGCAACCGCATGTCTTGCCGCTGTGGTGCCCAGATGTGCTACCTCTGTCGAGTTTCTATTAATGGATATGACCATTTCTGCCAACATCCCCGCTCACCAGGAGCCCCTTGCCAGGAGTGTTCAAGATGCTCTCTCTGGACCGATCCCACT|GTCTCTCATTCCACCTAATGAGAAACGCCCACAGGTGTGGAGGGGCAACCCACCCCTTCAATCAGGAACCTCAGAATGTGACATTTGGAAATTGGGTGGTTGCAGGTGTAgCGAATTAACCT	out-of-frame	GTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAPCQECSRCSLWTDPT|vshst*	.
TALL_VC104	RP11-325K4.3	DOK4(3500),CCDC102A(21351)	+/+	./+	16:56940401	16:57490827	splice-site	intergenic	deletion	downstream	upstream	2	1	0	118	12	high	.	.	duplicates(14),mismappers(2),mismatches(5)	GGGGGCCACCGTTGTTATGTACCTGTAAGCAGATGGTTTCTCTAATATAAATTACACTACACTGTGTTCACACTAAGCAGATTTTGCTCTTTTTGTTTCTTGTTTTTTTTGAGATGGAGTCTCGCTCTGTCATTCAGGCTGGAGTACAATGGCACAATCACTGCAATCTCCGCTTCCCAG|GTTCGgGCGATTCTCCTGCCTCAGCCTCC	.	.	.
TALL_VC104	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	9	10	0	115	59	medium	.	.	duplicates(28),mismappers(1),mismatches(2)	GCCCgGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTC?TCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCAC	.	.	.
TALL_VC104	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	1	0	3	42	medium	.	.	duplicates(2),low_entropy(1)	GCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGG	.	.	.
TALL_VC104	MTAP	CDKN2B-AS1	+/+	+/+	9:21838010	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	0	54	31	low	.	.	duplicates(16),low_entropy(3),mismatches(1)	GGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCC	out-of-frame	EEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|dylpqhfkgfqerilvsml*	.
TALL_VC104	MTAP	CDKN2B-AS1	+/+	+/+	9:21838010	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	54	17	low	.	.	duplicates(2),low_entropy(1)	CCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGA	out-of-frame	PGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|cpf*	.
TALL_VC104	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	123	588	low	.	.	duplicates(6)	GGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGT	out-of-frame	ARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC104	HMGB1P5(75720),AC092421.1(211552)	ZNF385D	./-	-/-	3:22458649	3:22169035	intergenic	splice-site	deletion/read-through	upstream	downstream	4	0	0	139	395	low	.	.	duplicates(6),mismappers(3),mismatches(1)	AGCGGGGGATGGAAGGCTGCTGCTCCGTGGCTCGTGCACTGAGAAGAAAGGTGCTGCTATCTTCCCATAGAAACTTCAACAGTTTTTGCTGGAGCTGTGATGAAGGCTGACTGCAAAG|ATTTCACCTGTGTACACGATGGCGAGAGTGAGGCTGAATTAATACCTGATGACTTTGAAGAAAAACCAaAAAGAGA	.	.	.
TALL_VC104	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	0	0	45	91	low	.	.	duplicates(9),mismatches(3)	AGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCC	.	.	.
TALL_VC104	CTD-2231H16.1	PLEKHG4B	+/+	+/+	5:113448	5:154875	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	83	143	low	.	.	duplicates(3),low_entropy(1)	GCCTGTATCCAGAGGACGCTCTCTGCCTTGTACCCACCGTTTGAAGCCACGGCAGCCACGGTGCTCTGGCAGCTGTTCAGCGTGGCCGAGAGGTGCCACGGTGGGGACGGGCTGCACTGCCTCACCAGCTTCCTCCTCCCAGCCAAGAGGGCCCTGCAGCACCTGCAGCAGGAAGCCTGT|TGTGAGGTCGTGAGCTCCCTGAAGGCCGTGCACAAATTTGTTGACAGCTGCCAGCTGACCGCAGACCTCGACGGCTCCTTTCCCTACAGCCATGGTGACTGGATCTGCTTCCGTCAG___AGGCTGGAACACTTCGCTGCAAACTGTGAAGAAGCCATCATTTTCCTACAGAATTCATTgTGCTCCCTGAACACCC	.	.	.
TALL_VC104	CTD-2231H16.1	PLEKHG4B	+/+	+/+	5:113448	5:143047	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	83	98	low	.	.	read_through(1)	GACGGGCTGCACTGCCTCACCAGCTTCCTCCTCCCAGCCAAGAGGGCCCTGCAGCACCTGCAGCAGGAAGCCTGT|ACGTTCTTGCATCCTCAGCCTGTGTCAGCACAGACGGCGGCAGCCTCCATTGCCACAACCCC	.	.	.
TALL_VC104	MTCH2	METAP1D	-/-	+/+	11:47634454	2:172070997	intron	CDS	translocation	upstream	upstream	2	0	0	9	12	low	.	.	duplicates(1)	GGCCTGTGTGTTCAGTGTCTGTTCCCAAATGAAATTAAACCTTCAAATTAATTTGGGCTTTACTACATGTATAACATTAAAAAGAGAGAGGATCAGTGCTTGCTGTTCAGAATAGATGCATTTCAAGAAAACTCATTTTGCC|AGGAGGTGTAGAGATGAAGCAATTGCAGCTTGCAGAGCAGGGGCTCCCTTCTCTGTAATTGGAAACACAATCAG___ATATTCACCATC	.	.	.
TALL_VC104	SLC26A11	ENDOV	+/+	+/+	17:80246118	17:80415783	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	0	53	low	.	.	.	TTTCCCGGC...|...TGTGCTTCCCTGGTGGTGCTCAGCTTCCCTGAGCTCGAG___GTCCTTCTTGTGGATGGAAACGGGGTACTCCACCACCGAG___GCTTTGGGGTGGCCTGCCACCTTGGCGTCCTTACAGACCTGCCG	.	.	.
TALL_VC104	L2HGDH	KIAA0408	-/-	-/+	14:50265358	6:127447300	CDS	CDS	translocation/5'-5'	upstream	upstream	0	0	2	6	41	low	.	.	duplicates(2)	AACTGGCATCCCAGAATTTTTCCTATGGAGTTACTGAAATGTATAAAGCATGTTTTCTTGGTGCAACAGTGAAGTATCTTCAAAAATTCATCCCTGAAATTACTATCAGTGATATACTTAG...|...AAAGAGGAAAAGATGATACCATCTTTCGAAGTTTTCCCTTCATTTGGATACAACATAGACATCTCTTGTTGTCTCAAAGGGAAGTGAGGGTTGTAATTCCTTTTACTTCGACCCTCATGGGGCACCC	.	.	.
TALL_VC104	MDM4	NFASC	+/+	+/+	1:204557844	1:204879009	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	339	0	low	.	.	mismappers(1),mismatches(1)	GATCAGAGAATCACAAGAGCAGCAAATGTGGTTTCATCAAGTGGGAAGAAAGCAG...|...GGAAAAAAAGAAG	.	.	.
TALL_VC104	HMGCS1	CLK4	-/-	-/-	5:43294691	5:178618778	splice-site	splice-site	duplication	upstream	downstream	2	0	0	661	117	low	.	.	duplicates(3)	G___AGGGAAATGATAAAGATTTTACCTTGAATGATTTTGGCTTCATGATCTTTCACTCACCATATTGTAAACTGGTTCAGAAATCTCTAGCTCGGATGTTGCTGAATGACTTCCTTAATGACCAGAAT...GAACTCTTCAGTCAGAAAACAAAGGCATCTTTACTTGTATCAAATCAAAATGGAAATATGTACACATCTTCAGTATATGGTTCCCTTGCATCTGTTCTAGCACA|TCATTATTTAGAAGCAAGG	in-frame	ELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAh|HYLEA	.
TALL_VC104	SCMH1	CASC15	-/-	+/+	1:41186121	6:22214307	splice-site	splice-site	translocation	upstream	upstream	2	0	0	50	12	low	.	.	duplicates(2)	AGgGAGTGAGCCGCCCCGCGCCCCCGCCGCGCCCTCAG___ATGGAGAAATTAGCATACAAAGAAACTGACTTGTCAGAAGTCAGAGCAAGGTATTGGTGGATCCAGGGATAAATtCCAAACTTCTT...ACCGGTTTTTAGTCCATTGACTATGCAGCCTAATG|GGCACCGAGGAAGAGAACCAATGGCAGAGGCCACATGTGCAAGCAAGATGGGAGTCTGGAGAGCCTCAGGCTAAATCACGAGTGCTCAGCCC	out-of-frame	MQPN|ghrgrepmaeatcaskmgvwrasg*	.
TALL_VC104	VGLL4	AAK1	-/-	-/-	3:11601833	2:69544544	splice-site	splice-site	translocation	upstream	downstream	1	0	0	131	10	low	.	.	.	CAGGGGAGAACCCAGAATgCAGACCCTGCCGGTGGCCTCTGCCCTCAGCAGTCACCGCACCGGCCCTCCCCCAATCAGCCCCAGCAAGAGGAAGTTCAGCATGGAGCCAGGTGACGAGGACCTAGACTGTGACAACGACCACGTCTCCAAAATGAGTCGCATCTTCAACCCCCATCT|AGGGATCTTTCAGGGCACAAGAATATTGTGGGTTACATTGATTCTAGTATCAACAACGcGAGT	out-of-frame	RGEPRmQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFNPHl|gifqgtrilwvtlilvsttr	.
TALL_VC104	AVPR1B	DTL	-/-	+/+	1:206115950	1:212068225	splice-site	splice-site	inversion	upstream	upstream	0	1	0	29	100	low	.	.	duplicates(1)	GTGCTGGCCTACATCGCTTGCTGGGCTCCCTTCTTCAGTGTCCAGATGTGGTCCGTGTGGGACAAGAATGCCCCTGATGAAGG|ATAATCAAAGTATGGGATTTACGTAAGAATTATACTGCTTATC...TTCCTGTACCCAGGTAGCAGCACTCGAAAACTTG___GATATTCAAGTCTGATTTTGGATTCCACTGGCTCTACTTTATTTGCTAATTGCACAGACGATAACATCTACATGTTTAATATGACTGGGT	out-of-frame	VLAYIACWAPFFSVQMWSVWDKNAPDEg|*	.
TALL_VC105	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	14	18	0	92	126	high	.	.	duplicates(3),low_entropy(1),mismatches(4)	GGGGAGGGGAGCCGGCTCCCCAGCCTGCTTTCTCCTGCCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...GAACGTGAAACCCTGTTGGAAACAG___...GGGC...___...G___...TCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAGGTGAGTGGGGCGGGGCAGGGAGCCTAGCG	.	.	.
TALL_VC105	MIR4457(5884),CLPTM1L(2483)	TERT	./-	-/-	5:1315261	5:1282624	intergenic	splice-site	deletion/read-through	upstream	downstream	15	15	1	104	144	high	.	.	duplicates(6),low_entropy(5),mismatches(1)	GAAGCTTCACTGACCAACAGAGGCTCCACCTGGGCGACTTGAAACATGCTTAAAGGGTTTATCTGTCATTCATCCCGATGAGTTTAGTTCTGTTTTCCTCTTGGATTTCATTGATATTTCTGCATACCATCAAAGCCCTGTCTTATGATTGATCATGAGGTGGGACTTAGAAATGCGCTAAGTACCTGTGGATTTTAGACTGTGTCAAAGCCCTCGAAGCTGAAACAGAGGACTGACAAG|GGGTTGGCTGTGTTCCGGCCGCAGAGCACCGTCTGCGTGAGGAGATCCTGGCCAAGTTCCTGCACTGGCTGATGAGTGTGTACGTCGTCGAGCTGCTCAGGTCTTTCTTTTATGTCACGGAGACCACGTTTCAAAAGAACAGGCTCTTTTTCTACCGGAAGAGTGTCTGGAGCAAGTTGCAAAGCATTGGAATCAG___ACAGCACTTGAAGAGGGTGCAGCTGCGGGAGCTGTCGGAAGCAGAGGTCAGGCAGCATCGGGAAGCCAGGCCCGCCCTGCTGACGTCCAGACTCCGCTTCATCCCCAAGCCTGACGGGCTGCGG	.	.	.
TALL_VC105	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	18	4	1	133	106	high	.	.	duplicates(7),low_entropy(4),mismappers(23),mismatches(5)	CTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACA	.	.	.
TALL_VC105	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	11	10	2	254	106	high	.	.	duplicates(9),low_entropy(2),mismappers(2),mismatches(3)	AAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAgAGCgAAACAGTGACTTGGAAG	.	.	.
TALL_VC105	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	9	2	3	140	106	high	.	.	duplicates(2),low_entropy(1),mismappers(3),mismatches(5)	GCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAgAGCgAAACAGTGACTTGGAAG	.	.	.
TALL_VC105	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	284	106	low	.	.	low_entropy(2),mismatches(4)	GCCGATGTTAAAtAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAgAGCgAAACAGTGACTTGGAAG	.	.	.
TALL_VC105	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	6	11	0	63	53	high	.	.	duplicates(6),low_entropy(1)	CTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATC	out-of-frame	LILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL_VC105	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	2	5	0	63	28	low	.	.	duplicates(1),mismatches(1)	GGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAAC	out-of-frame	KIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL_VC105	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	0	63	96	low	.	.	duplicates(1),mismatches(1)	G___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAAC	out-of-frame	AWKAAHHHAFKGQLPGEHLGFEGRGLYTCHSDHSLWLLEGGDSARRYCHY*SVH*Q|cpf*	.
TALL_VC105	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	1	3	0	23	11	high	.	.	low_entropy(1)	ATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGG	.	.	.
TALL_VC105	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	5	1	53	20	low	.	.	duplicates(1),low_entropy(3),mismappers(2),mismatches(2)	GCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___TGTCTGAGTGCTATGAAGATTGCACACA	.	.	.
TALL_VC105	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	6	0	13	21	low	.	.	duplicates(1),low_entropy(1)	GTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAG	.	.	.
TALL_VC105	ANKRD36	ANKRD36	+/+	+/+	2:97224879	2:97179738	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	1	4	1	83	73	low	.	.	duplicates(3)	TGAAAATAAAAATTCTGTTCTGAATACAGCCACCAAAATGAAGGATGTACAAACATCCACACCAG___CAGAACAAGACTTAGAAATGGCATCAGAGGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG|TGTCTTCTCAGAAACAACCAGCTGAGAAG___GCTACAAGTGACGACAAAGATTCTGTTTCAAATATAGCCACAGAAATAAAGGAGGGACCAATATCTGGGACAG___TGTCTTCTCAGAAACAACCAGCTGAGAAG___GCTACAAGTGACGAGAAAGATTCTGTTTCAAATATAGCCACAGAAATAAAGAAGGGACAACAATCTGGGACAG___TGTCTCCTCAGAAACAATCGGCCTGGAAG___GTTATATTTAAAAAGAAAGTTTCTCTTTTGAATATTGCCACAAGAATAATGGGTG	out-of-frame	ENKNSVLNTATKMKDVQTSTPAEQDLEMASEGEQKRLEEYENNQPQ|cllrnnqlrrlqvttkilfqi*	.
TALL_VC105	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	2	0	67	292	low	.	.	duplicates(2),mismatches(1)	CTGGAATTTTGCCGATTTCATGACTAACCAGT___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATAC	out-of-frame	MKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL_VC105	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	17	292	low	.	.	duplicates(1),read_through(3)	GCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACC-AAAACCACACCTAAAAGAAAACCTGC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL_VC105	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	2	0	56	8	low	.	.	.	CTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCC	.	.	.
TALL_VC105	LINC01097	RAB28	-/-	-/-	4:13527537	4:13479526	exon	splice-site	deletion/read-through	upstream	downstream	4	0	0	14	94	low	.	.	duplicates(1),low_entropy(2)	GCTGTGGATCACACGCGGTCGCTGCCAAAGCCTCCATTTCGGTTCTGACCCAGTGACTTTGGGGACGCCCAGGGAGGAGATGTGGAGAGGATGTGGCCAAGGTGAACCAGCCAGT|ACCTCCTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGAT?ACATTGCCAG___GAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGC	.	.	.
TALL_VC105	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	36	179	low	.	.	mismatches(1)	CCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTG...TGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCG...GCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAAGGACAAGATGGAG	.	.	.
TALL_VC105	EEF1A1P5	VAV2	+/+	-/+	9:133020280	9:133809736	exon	intron	deletion/5'-5'	downstream	upstream	0	0	3	396	0	low	.	.	low_entropy(1),mismatches(3)	CACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGgTGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGtCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGC...|...AATGTGGCCG	.	.	.
TALL_VC105	C5orf56	RAD50	+/+	+/+	5:132419940	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	170	76	low	.	.	duplicates(2),low_entropy(1),mismappers(1)	GGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAGATTCGTCTGCAATTTCGT	in-frame	MDSLAAGELNASHQPW|TIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQF	.
TALL_VC105	C5orf56	RAD50	+/+	+/+	5:132449689	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	185	76	low	.	.	duplicates(1),mismatches(2)	TGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAG	out-of-frame	GELNASHQPWVPEFVAYWRKTHQ|dhh*	.
TALL_VC105	RNF213	RPTOR	+/+	+/+	17:80389911	17:80615236	CDS	intron	deletion/read-through	downstream	upstream	0	0	2	239	0	low	.	.	duplicates(1),mismappers(2),mismatches(2)	GACATCCTGCAAATGGGTGATCAGACGATTCACGTGTTAAAG___GCCTTAAACAGATGCCAGTTAAAACACACCATTGCCCTCTGGCAGTTCCTGTCTGCTCATAAGTCTGAACAGCTGCTGCGGCTG...|...GAAGACCTGCC	.	.	.
TALL_VC105	TM7SF3	ITPR2	-/-	-/-	12:26974114	12:26592589	CDS	intron	deletion/read-through	upstream	downstream	0	0	2	217	1	low	.	.	mismappers(1),mismatches(1)	CACAAATGTGCCTTTTCAAACTAATG___ACTTCATTATCCTGGCAGTATGGGGCATGCTGGCTGTAAGTGGAATTACGTTACAGATTCGAAGAGAGAGAGGACGACCGTTCTTCCCTCCCCACCCATACAAGaTATGGAAGC...|...ATGAGCTTAC	.	.	.
TALL_VC105	RGPD8	CTD-2286N8.1	-/.	+/.	2:112410885	18:79146044	intron	exon	translocation	upstream	upstream	0	0	2	47	2	low	.	.	duplicates(1)	.	.	.	.
TALL_VC105	SHISA2	ATP8A2	-/-	+/-	13:26050642	13:26020820	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	1	1	0	51	37	low	.	.	.	CCACCATCTGCTGCGGCAGCTGCGCGTTGCGCTACTGCTGCTCCAGCGCCGAGGCGCGCCTGGACCAGGGCGGCTGCGACAATGACCGCCAGCAGGGCGCTGGCGAGCCTGGCCGGGCGGACAAAGACGGCCCCGACGGCTCGGCAG|AACGAGAAGGGCGGTGGAAGAAGGAATTTTTCGCATCTGTATCTGAGTCTGC	out-of-frame	TICCGSCALRYCCSSAEARLDQGGCDNDRQQGAGEPGRADKDGPDGSA|eregrwkkeffasvses	.
TALL_VC105	GHRLOS	SLC38A1	+/+	-/-	3:10285853	12:46243314	splice-site	splice-site	translocation	downstream	downstream	2	0	0	13	159	low	.	.	.	TTTTCCTCTTTGAAATAAATTCCCATTTGGAACATCAGCATACAGTTTGAACATTTATTCGCCTCCTGAGCTTGTACAACAGTCGTGGGAGTTGCTGCAGAAGCAAGCGAAAAGCCAGATGAGCGCTTCTAAACTTAGAGAGAG|ATATTTATTGAGTGTCTACTGTGTGCCAGGCACTATATCTATGTGCATAGAAAAACCCTGGAAG	.	.	.
TALL_VC105	TCF12	PPIA	+/+	+/+	15:56919988	7:44799702	splice-site	splice-site	translocation	downstream	upstream	0	2	0	259	5074	low	.	.	.	CCCTAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCG|GGTGGTGACTTCACACGCCATA...GGTGGCAAGTCCATCTATGGGGAGAAATTTGAAGATGAGAACTTCATCCTAAAGCATACGGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCCAACACAAATGGTTCCCAGTTTTTCATCTGCA	in-frame	MNPQQQRMAAIGTDKELSDLLDFSA|GGDFTRH	.
TALL001	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	54	45	17	245	236	high	.	.	duplicates(6),low_entropy(30),mismappers(4),mismatches(6)	TGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGG	out-of-frame	GAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL001	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	15	15	4	72	68	high	.	.	duplicates(1),low_entropy(5),mismatches(4)	CTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...ATT?CCTCATTGTGGATCTGCCAGGGCCAAG___...CGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGC	.	.	.
TALL001	OR6J1(2306),AC243945.1(982)	MAPKAPK5	./+	+/+	14:22637117	12:111880447	intergenic	splice-site	translocation	downstream	upstream	11	1	3	58	105	high	.	.	mismatches(1)	CACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCGGCCGCCTTCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGCCGCAACCCTGTCTGAGAG|GTACTGGAGGCGCAAAGAAGGCATCAGAAGGAGAAATCTGGCATCATACCTACCTCACCGACGCCCTACACTTACAACAAG___AGCTGTGACTTGTGGTCCCTAGGGGTGATTATCTATGTGATGCTGTGCGGATACCCTCCTTTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAAGAAAGATCATGACAGGCAG	.	.	.
TALL001	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	10	0	24	28	high	.	.	low_entropy(3),mismappers(1)	GCTGGGGATTTTAcCAGCCTTGTGTCATTTCTCATATGGTCTAACTGTGCATTCTCTATGCTAGACTTACTTGGGGGAACTTGTATCTTTAAAATTTTG...GAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAG	.	.	.
TALL001	MTAP	LINC01241(58988),FAM71BP1(65956)	+/+	./+	9:21859425	9:25871956	splice-site	intergenic	deletion	downstream	upstream	0	2	4	100	14	high	.	.	.	GGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GCATGGAAAACTGTACTCAGACCTGTCATTCTAATGCATGCTCAAGCCTCCATTTGCTACAATGTGACTAGATTTGCAACCCTGTGTGCCCTAAATGGTAATGAGAATGGTAG...___GCAAAGTGGCAGAAAAGAAGAGGATACGATTTCAGAAAAGGATACACTAAAGTACTGACAAAGTCAATAATGCAC	out-of-frame	VVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|awktvlrpvilmhaqasicynvtrfatlcalngneng	.
TALL001	ZNF257	RP11-678G14.4	+/+	-/-	19:22052635	19:21593829	splice-site	exon	inversion	downstream	downstream	0	1	1	167	9	high	.	.	.	CTCGTCTTCCCTGGTCTGTGTCCTCTTCTCCTAGGGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTGGGAGATCCCCAGCTAAGACGCCAGGTCCTCCTGGAAGCCTAGAAATG|ACAGTGTCTCCTCAGTGGAGTAAAAGCCTCACGGTGTGTTGAATCTTGGTCTGAGAGTC...GGTGGACCGGATCCACTTACAAGAGTCAATGTTCAAACTTTCAACTGTCTCCAGCTGTGAGATTCAGAACCTCAACA___GGACACTGAGCGCCAGGGCCCAAGTCACCAGCAAGAGAAAACCC	out-of-frame	M|tvspqwsksltvc*	.
TALL001	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	11	21	8	107	49	medium	.	.	duplicates(1),low_entropy(4),mismatches(1)	AAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCG...GATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGC	.	.	.
TALL001	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	7	4	0	385	53	medium	.	.	duplicates(1),mismappers(2)	CACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAAC...GCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGC	.	.	.
TALL001	RP11-54O7.1	RP11-206L10.1(5104),RP11-206L10.3(8562)	+/+	./+	1:914824	1:733251	exon	intergenic	duplication	downstream	upstream	2	1	0	29	1	medium	.	.	.	GCGGAGCCCCGCGACTGCCCAGCTCACTGCCCCCAGTGTCCAGGCTGTGGTGCAGGCGTGGGGACCCAGGTGTGTTCAGGGGTCTCCTTCAGGGAAGG...GGGAGGCTGAGGTGGGAGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCATTTCTACTAAAAAAAATACAAAATTAGCTGGGCATGGTGGCGCATGCCT|GCACTTTATTTGCATTATTACACTGTAATATATAATAAAATAATTATAGAACTCACCATAATGTAGAATCAGTGGGCGTGTTAAGCTTGTTT	.	.	.
TALL001	LINC01226	LINC01225	+/.	+/.	1:31523622	1:31524541	exon	intron	duplication	upstream	downstream	9	2	4	124	58	low	.	.	.	.	.	.	.
TALL001	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	1	8	0	11	34	low	.	.	low_entropy(3)	CGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAcCCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGC	.	.	.
TALL001	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	7	0	59	10	low	.	.	.	CTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAG	.	.	.
TALL001	GS1-24F4.3(436),DEFA4(4913)	DEFA1	./.	-/.	8:6930909	8:6978329	intergenic	intron	deletion/read-through	downstream	upstream	3	3	0	59	27	low	.	.	duplicates(1)	.	.	.	.
TALL001	GAS2	RP11-17A1.3	+/+	+/+	11:22775348	11:22834907	intron	splice-site	deletion/read-through	downstream	upstream	2	3	1	255	14	low	.	.	.	ACATGAGTAGATTGCATTTTAAATCATTCAGGCTGTAGTGCAGATAATGAATTGAAAAGGTATAAAGTTGGAGGACGAGCATTCCACCGTTTTGGCTTGGAGAGTGTGGAGGTCAAGAGGGTGGCAGCTCATTCTGGGGACCTACCTCTTGAAATTCCAG|AGTTCCACTCTTTTTGTCGACAATAATATGGCGCCCAAACACGTGGGGCCTCAGAGAAGACTCTGGATCCGGAAGGAGTATCCCAAAACCAGAGCTAAGGTACCAGCTGGAGCCCACTGAAGCCTCACCGAGTTTGGGCTTCTCCTCCTGTGGAACTG___GAAACCAAAATCATGGTATTTTGAAAACCAGAGGTATGAATCTCCCTC	.	.	.
TALL001	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	2	1	59	12	low	.	.	mismappers(3)	GAACTACATCAACCTAGTATCAATAG___GGaATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAAgCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTgCAACAACCTAGTGTCAtTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGA	out-of-frame	NYINLVSIGnRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL001	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	1	112	91	low	.	.	.	CGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAG...AGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTAaAGCAAGTGCAAGGAATACAGTG	.	.	.
TALL001	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	4	0	49	24	low	.	.	low_entropy(3),mismatches(1)	CTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCaGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCtCTCCAGCGACG...CGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGG...GCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAATGTAAGTATTCCTGTTTCCCTTCTTG	.	.	.
TALL001	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	0	2	12	5	low	.	.	duplicates(1),low_entropy(2)	TGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGG	.	.	.
TALL001	ZNF763	ZNF440(166),CTC-499B15.8(5874)	+/+	./+	19:11980365	19:11835367	3'UTR	intergenic	duplication	downstream	upstream	0	0	3	7	16	low	.	.	mismappers(1)	AACCAAAGCAGGTGAATCACCTGAGGTCAGGAGTTCAAGACTGGCCTGATCAATATGATGAAACCCCTGTCTCTACTAAAACTACAAAAATTGGCCAGGCGTGGTGGCCTGCTTCTGTAATCCTAGCTAGTTGGGAGGCTGGCACAGGAGAATCGCTTGAATCTGGGGGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCTAGCCTGGGCAACAGG...|...AAAAAAAAAAAAAAAAAAAAAAGACTTGGCCTTGTGGTGAGGGG	.	.	.
TALL001	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	90	248	low	.	.	.	CCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL001	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	34	248	low	.	.	read_through(15)	CTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCA	out-of-frame	VEINENLPARKT*RKPRKLARERGKRIA*LPLRESRVLEARNLRARCQLGHTSL*RLQGRILAFLFQLLVAP|er*	.
TALL001	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	2	1	0	7	3	low	.	.	.	AAAGAAGTAGCAATCTATATTTTAAGAAGAGATTACTGTAATTTCTTTCAGAAG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAG	out-of-frame	KEVAIYILRRDYCNFFQKPVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprv	.
TALL001	GNG10	C9orf84	+/+	-/+	9:111666948	9:111696273	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	173	1	low	.	.	.	GCCTGCAAGGATGCCCTGCTGGTGGGTGTTCCAGCTGGAAGTAACCCCTTCCGGGAGCCTAGATCCTGTGCTTTACTCTGAAGACTCGT...|...GTTCTTCAGATGCCTGAAAATAAAAAGGTGCTAATGGTCCTGATGTGCTCTAAGAGATCAAAAGCCAT	.	.	.
TALL001	DNAJC25-GNG10	C9orf84	+/+	-/+	9:111666948	9:111696273	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	173	1	low	.	.	.	GCCTGCAAGGATGCCCTGCTGGTGGGTGTTCCAGCTGGAAGTAACCCCTTCCGGGAGCCTAGATCCTGTGCTTTACTCTGAAGACTCGT...|...GTTCTTCAGATGCCTGAAAATAAAAAGGTGCTAATGGTCCTGATGTGCTCTAAGAGATCAAAAGCCAT	.	.	.
TALL001	ANKRD36B	ANKRD36(2173),RP11-734K23.9(15210)	-/-	./-	2:97511572	2:97266694	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	2	91	14	low	.	.	duplicates(1)	CAAAAAGAGACCAAGAGCTTGCTTTCCAGGGCACAGTAGATAAATGTCGTCACTTACAGGAAAATTTGAATTCTCATGTTCTGATTCTTTCTCTGCAACTTTCTAAAGCTG...|...GTGGCCATACTGGGTCTTTAgGAgGGTCTGTGATCCATTCCTCCTCACTGGGCGGGACCTCCCAACCAGGGCCTCCAGCCACCCCCACCAGTGTTCTCGGGCTGGCAGAGATTTGAATTCTCCCTGGCATGGAGGTCTGGA	.	.	.
TALL001	PPIL3	NDC80	-/-	+/+	2:200876976	18:2612687	CDS	intron	translocation	upstream	upstream	0	0	2	234	5	low	.	.	.	CAAGAAGTTTGAGGATGAATACAGTGAATATCTTAAG___CACAATGTTAGAGGTGTTGTATCTATGGCTAATAATGGCCCGAACACCAATGGATCTCAGTT...|...TTTAATCAGTTAACATAAAGCTAGATTTGAAAACCTAATGGTAAGTTACTATTATTTTTTAGTTTCTGTATAGTTTGGTGTTATTAGGAAAATTAGAC	.	.	.
TALL001	RNF11	TTC39A	+/+	-/+	1:51270125	1:51288120	splice-site	3'UTR	deletion/read-through/5'-5'	downstream	upstream	1	0	1	90	1	low	.	.	.	GTCTACCACCCAACACCTAGCCAGACTCGGCTAGCAACTCAGCTGACTGAAGAGGAACAAATTAGGATAGCTCAAAGAATAGGTCTTATACAACATCTGCCTAAAGGAGTTTATGACCCTGGAAGAGATGGATCAGAAAAAAAGATCCGGGA|CTGTCTCTGTCTTCCAGCCCGGAACTGCTGCACAAAGCTACAAGGACACTGATGAGACCATGGATCTGCTGCTGTTCTCTAGGGAAGACTTGGCTTGGAGTGTGGCTGCCTGGATTCGAAAGTGTGTCCTTGgCTCCATG	out-of-frame	VYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRd|clclparncctklqgh*	.
TALL001	EEF1A1P6	FAM126A	-/.	-/.	7:22511594	7:22918879	exon	intron	deletion	downstream	upstream	0	0	2	5779	1	low	.	.	mismatches(2)	.	.	.	.
TALL001	ZNF257	RP11-678G14.3	+/+	-/-	19:22052635	19:21571539	splice-site	splice-site	inversion	downstream	downstream	1	0	0	167	365	low	.	.	.	GTCTTCCCTGGTCTGTGTCCTCTTCTCCTAGGGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTGGGAGATCCCCAGCTAAGACGCCAGGTCCTCCTGGAAGCCTAGAAATG|AATGCTGCTGTCTCCATCAATAAAGTCCATGTTAGCCACCTAGAGG	out-of-frame	M|naavsinkvhvshle	.
TALL001	RCC1	NUCB2	+/+	+/+	1:28508160	11:17311872	splice-site	splice-site	translocation	downstream	upstream	0	1	0	1090	1498	low	.	.	.	CAGATTCGCAGTGGTCGCTTCTTCTCCTTG___GATTTGTTAAGGATTCCAAGTAACTCTTATTTG|ATGTCAATAGTGATGGATTCCTGGATGAACAAGAAT...TGGTGACTCTGGAGGAGTTTTTGAAAGCCACAGAAAAAAAAGAATTCTTGGAGCCAGATAGCTGGGAG___TCTCCTTCCATCTGAAACAATCAAGAGGAC	.	.	.
TALL001	RCC1	NUCB2	+/+	+/+	1:28508901	11:17349345	splice-site	splice-site	translocation	downstream	upstream	0	1	0	1286	385	low	.	.	.	AGACGATCTGCACTTCGCATTTTGGCATTGACATTTAATTTTAGGGTCCTTTATATAGAAGGGAGA|GTCCAGAGGTGTCCTTCTAAAGCTGGTAGAGGT...AGAACCCTTCTCTTTTGCTGTCCCTTTGTCCTAGTGCATGGTTTCCACACTGTGGTGCAAGATGTCTCCTCAAGCTCTAGGCATTACATCTGCTATCCT	.	.	.
TALL001	CCDC18	RP4-717I23.3	+/+	-/-	1:93180852	1:93339536	splice-site	splice-site	inversion	downstream	downstream	0	1	0	32	185	low	.	.	.	GCCCGGGAAAGGGTCAGAGGCTTCCTAACGCAGACTCGAGTGCGAAGCGCGCAGTCGCCGG|GAGTCTCTGCATTAGTTGGACAGCTCTTCTGGAATTATCTTCTAAGTCAACTGTGGGTTGGGTAGGTGGCTCTGCTGATTTTTCGCTGGACTTCCACATTTGGG	.	.	.
TALL002	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	34	6	1	131	149	high	.	.	duplicates(3),low_entropy(4),mismappers(43),mismatches(5)	TCGGAACAAG___...GCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___...GGATAGAGGACCTG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGT...AGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCCTGCCCTTTACATTTTAACTCCCTTCAACCCTATTAGAAAATTAGCTATTAAGATTTTGG	.	.	.
TALL002	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	9	7	8	78	149	high	.	.	duplicates(2),mismappers(7),mismatches(1)	AAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCC	.	.	.
TALL002	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	12	4	5	222	149	high	.	.	duplicates(2),mismappers(5),mismatches(2)	CG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAG	.	.	.
TALL002	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	2	207	149	low	.	.	mismappers(2),mismatches(2)	CATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___C...GAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGG	.	.	.
TALL002	MTAP	LINC01239	+/+	+/+	9:21854870	9:22674443	splice-site	splice-site	deletion	downstream	upstream	18	0	1	120	57	high	.	.	duplicates(1),mismatches(3)	CTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATG...GCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|GTACCAGCATGTTATGAAGAATAAGCAAGAAGAAAGAGAAGGAGAAGAAGCAGGAGGAGGAGGAGAGAAGGAAAGGGAGGAGGAGGAGGAGAAAAAGATGGTGGTAGAGGAGGAGGAGAAGAAGAAGAAGGAGGAGAAGGAGAAGGAGAAGAAGGAGCAGGAGaAGaAGaAgaAgGAgGAgaAGGAGAAGG	out-of-frame	PFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|vpacyee*	.
TALL002	MTAP	RP11-408N14.1(169397),DMRTA1(62772)	+/+	./+	9:21854870	9:22384069	splice-site	intergenic	deletion	downstream	upstream	7	7	1	120	18	high	.	.	duplicates(1),low_entropy(2)	TAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|CTGCTCAGTGAAGGAGAGACTTCGTTGAAGAGTATTGAATTTGGTGATGTGTAAGAGACCTGGGAAGTAGAGTGCCAATGGAAGTGAATGGTTTGGAAGACTAAAAAGGGCTCTAGATGCTCCTTTTCTATACAGCGTCCTGATAATCTTAACAGATTCAACAACCTCCCAAGAGAAATAATTCCTGTAGAG	out-of-frame	GLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|llsegetslksiefgdv*	.
TALL002	MTAP	DMRTA1(10602),LINC01239(179858)	+/+	./+	9:21854870	9:22466342	splice-site	intergenic	deletion	downstream	upstream	6	5	0	120	30	high	.	.	duplicates(1),low_entropy(1),mismappers(10),mismatches(1)	GGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAaGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|ATTGTGTGCGCCTGTAATCCCAGGACTTTGGGAGACCAAGATCAGCAGATCACTTAAGGCCAGGAATTTGAGTCCAGCCTGGGCAACAAG___GTCAACCTTCTGGGATACAGAGTGGATGGGGAAGAAGAGTTGATCTGGAAGGA...AGTTTCTGCACCAAGGACTTTTTGGTGCTGACTACTTGGCTGTTTGATTGAGACAGGAAACCAGACACATCTTAGAGGATTTACAGGAGAATCcGGAG	out-of-frame	GVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|ivcacnprtlgdqdqqit*	.
TALL002	RNF216	UNC93B2	-/-	-/+	7:5641154	7:6858058	splice-site	intron	inversion/5'-5'	upstream	upstream	1	8	0	89	33	high	.	.	.	CTGCAACCGCATGTCTTGCCGCTGTGGTGCCCAGATGTGCTACCTCTGTCGAGTTTCTATTAATGGATATGACCATTTCTGCCAACATCCCCGCTCACCAGGAGCCCCTTGCCAGGAGTGTTCAAGATGCTCTCTCTGGACCGATCCCACT|GTGTGCAGTGCCAAGCTTGCAGGCGCTGTTTCTCCTCCTCAGCCGGGACTAGAGAGATCCAACTGTTTGCAGCTGCCAACTCTGCAAATCAAACCTGAAGCTAAGCATGGAGAGGGGGGCTTCCTTTCCG___AGGATCCAGCTGTGTTGCAGGACCTGAGGCACAGGGGCCCAGAAAAAG	out-of-frame	CNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAPCQECSRCSLWTDPT|vcsaklagavsppqpglersnclqlptlqikpeakhgeggflsedpavlqdlrhrgpek	.
TALL002	MTAP	DMRTA1(184942),LINC01239(5518)	+/+	./+	9:21854870	9:22640682	splice-site	intergenic	deletion	downstream	upstream	3	1	0	120	21	high	.	.	mismatches(1)	CCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCtGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGG...GTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|TTTCTGCACCAAGGACTTTTTGGTGCTGACTACTTGGCTGTTTGATTGAGACAGGAAACCAGACACATCTTAGAGGATTTACAGGAG	out-of-frame	VVLAKEAGICYASIAMATDYDCWKEHEEA|flhqglfgadylav*	.
TALL002	LRRC69	LRRC69	+/.	+/.	8:91130554	8:91139262	intron	intron	duplication	upstream	downstream	1	1	0	3	4	high	.	.	.	.	.	.	.
TALL002	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	3	11	2	67	20	medium	.	.	duplicates(1),low_entropy(1)	GCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGGTCCGGG...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL002	CD1B	CD1C(1408),CD1B(32913)	-/-	./-	1:158329852	1:158295038	splice-site	intergenic	deletion/read-through	upstream	downstream	1	11	1	2401	23	medium	.	.	duplicates(1),low_entropy(2)	AAGGTATCATGGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|GTCACAGGGTGACTAAGGGTGCAGGAGAGTCACCTAGGGCCTCCTGGTGCCAAGGAAATGAGCAATGGAAGCAGGACCCAAGCTGG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCTGGGCAATGGAATGTGTGGTGTTGGAAGCATTAGCCAGCTCCAGTCCTGACCACTGAAAATATCACATCTGATCATCTTACCCTGTGGTACCAACTTGGCAGTCAAATTTCTA	out-of-frame	GIMETVRILLYETCPRYLLGVLNAGKADLQRQ|ghrvtkgagespraswcqgneqwkqdpswercncpis*	.
TALL002	MTAP	RP11-408N14.1(94051),DMRTA1(138118)	+/.	./.	9:21856048	9:22308723	intron	intergenic	deletion	downstream	upstream	0	7	5	15	26	medium	.	.	duplicates(1),mismatches(3)	.	.	.	.
TALL002	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	1	0	320	49	medium	.	.	mismappers(1)	ACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGG...CCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAAC...ATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGAC	.	.	.
TALL002	EXOSC8	EXOSC8	+/+	+/+	13:37003894	13:37001401	exon	intron	duplication	downstream	upstream	2	0	2	32	17	medium	.	.	.	TAAATAACTTGCCTGAAGTCTCTCAGCCAGTAAGTATGGCTCTGACATTTGAACTGGCTTAGTAATTGCAGAGCATTTGCTTTTTTTTTTTTTTTTGAGAC|TCTGTCAGAATCAATCAATCAAGATTGTTGCATCAGAACCACATACCGCCTGCTTCTCCCTCTCCCGTAATTTATTTCTAAAAGGATCATGCCTCGTTTGGAAGGTTTTTGTGTGTGTGAAGCCAGTGG	.	.	.
TALL002	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	1	1	5	61	medium	.	.	.	GCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCG...GTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCAC	.	.	.
TALL002	ASIC1	ASIC1	+/+	+/+	12:50081576	12:50079742	CDS	intron	duplication	downstream	upstream	1	2	0	78	17	medium	.	.	.	GTGCGGACAAGGGCGTGGCCCTCAGCCTGGACGACGTCAAAAGACAC___...CCCCTTCCCCCAGAACCCGTGCGAGAGCCTTCGGGGCCACCCTGC|TAGGATGTTGGCAGAGTTTAGCATCCAGGCAGGGTGAAGGGCAGGTCACGGA...GAAAGGGGCCCAGAGTTTCTCTGGGCAGAGCTAGGATGTGCATGTGGGAAGGTGCTGGCAGAAGGGCACCACTCAACTGgGACCTCTCACCTGGCTGAG	out-of-frame	pfpqNPCESLRGHPa|rmlaefsiqag*	.
TALL002	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	6	0	23	26	low	.	.	.	CTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCC...G___GGTCCTCACTGAGCAGCGAGTCGcCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGC	.	.	.
TALL002	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	8	0	83	17	low	.	.	low_entropy(3)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTG...CCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCAT	.	.	.
TALL002	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	5	3	1	97	91	low	.	.	low_entropy(1),mismatches(1)	TTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGT	out-of-frame	LMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL002	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	120	91	low	.	.	low_entropy(1)	GATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGG	in-frame	FFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQ	.
TALL002	LINC01226	LINC01225	+/.	+/.	1:31523625	1:31524544	exon	intron	duplication	upstream	downstream	6	0	3	107	56	low	.	.	duplicates(1)	.	.	.	.
TALL002	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	2	89	203	low	.	.	duplicates(1),low_entropy(3)	CGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAG...TGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL002	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	26	203	low	.	.	read_through(10)	GAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGgGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCC...AGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAGG	out-of-frame	KTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL002	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	3	3	0	1740	408	low	.	.	.	CATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTTGACCCTG	out-of-frame	ivfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssiclhfdp	.
TALL002	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	3	0	2	322	26	low	.	.	.	GGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL002	AP000783.1	GRAMD1B	+/+	+/+	11:123480893	11:123577367	intron	splice-site	deletion/read-through	downstream	upstream	2	0	2	5	9	low	.	.	.	TCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGgGCAGTGAAAGCAG...AGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGA...AGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAA	.	.	.
TALL002	RP11-421L21.3(38221),SCARNA16(7664)	DPH5	./-	-/-	1:101125489	1:101021765	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	25	185	low	.	.	.	CTTCACCGTCTGCATGAAAAGGCCATCTTTGAATAGAAAAGACAGGCAGTGTGACATAGAAAGGGTACAGCTTCAGAAGTCAGACAAACCTGGCCATTTAACTGTGGG|GAAGAGTTTTATGGAAGAAAATTGGTTGTTGCTGATAGAGAAGAAGTGGAACAAGAAGCAGATAATATTTTAAAGGATGCTGATATCAGTGATGTTGCATTCCTTGTGGTTGGTGATCCATTTGG___GGCCACAACACACAGTGATCTTGTTCTAAGA	.	.	.
TALL002	EPHX2	GULOP(218),CLU(7626)	+/+	./+	8:27544244	8:27589291	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	2	309	2	low	.	.	.	GGAAG___ATCCTGATTCCGGCCCTGATGGTCACGGCGGAGAAGGACTTCGTGCTCGTTCCTCAGATGTCCCAGCACATGGAGGACTGG___ATTCCCCACCTGAAAAGGGGACACATTGAGGACTGTGGGCACTGGACACAGATGGACAA|GCACCCaATCCTGCAATCACCACATCCTGTTTTTCCAGGAG	out-of-frame	KILIPALMVTAEKDFVLVPQMSQHMEDWIPHLKRGHIEDCGHWTQMDk|hpilqsphpvfpg	.
TALL002	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	77	3	low	.	.	.	CTCAAACAGATG___CTTTGGAGTTTAACCCTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACTCTCAAACAGATG___TTGTAGAAATAAGAAGA...CACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACCTGCTACCACGGCCCTTCCCCAGTCTCAAT	.	.	.
TALL002	CHFR	ANKLE2	-/-	-/-	12:132836707	12:132755133	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	1	1	78	78	low	.	.	duplicates(1),mismappers(1)	CAAACAGGCGCCCCTTCCTCTGTCGCTCACTTTTCACGGTTGTCTCCTTCTGAGGCG|GTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGGATTGAAATGTGGACCCATTACATCAACTACAAG	.	.	.
TALL002	RP11-93O14.1(5857),VPS35(426)	VPS35	./.	-/.	16:46655706	16:46656816	intergenic	3'UTR	duplication	upstream	downstream	0	0	2	19	20	low	.	.	mismappers(1)	.	.	.	.
TALL002	ANAPC10	HHIP(9971),HSPD1P5(90383)	-/-	./-	4:145033085	4:144755242	exon	intergenic	deletion/read-through	upstream	downstream	0	0	2	9	3	low	.	.	.	AGAGCATACACAGCCTTCTGGAGAACTTTGCCCCAGTCCTGCAAAGTATTGTCATCTAGTTGGCATTGTGATTGTtACTTCAAAAGGCTATTCC...|...ATGAGAAATGCAGACTACCGGGCTCCACTTCATTCTTAGTGAGTCACAAGACTCACTAAGATCTTAACAAGATCCTCAGATAACTGGTAAGAAAGAGC	.	.	.
TALL002	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	0	1	28	7	low	.	.	mismappers(1)	CATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCC...AGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAA	out-of-frame	RRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL002	AC011893.3	MCM6	+/+	-/+	2:135821844	2:135846146	exon	intron	deletion/read-through/5'-5'	downstream	upstream	1	1	0	331	22	low	.	.	mismappers(1)	GGAAGAGGAAAGGTACAAAGAGGTGTTGGCACTGAATGACCCTGAACAGGGCTGCACTGGAAATATCAGAG___AGACAGAGTTTCACCATGTTGCCCAGCCCAGTCTTGAACTCCTGGACTCAAGCAATCTTCCCACCTTTGCCTACCAGAGTGCTGGGATTACAGGTGTGAGCCATCATGCTAGTTGCGCACAGTTGGGCGAACTGACAGATGAGAAAGCAGAACCTCGTGAGTCCCACTCA|AACAACACGAAGTTTGGCAATCACAAGTGGCCTATGTGAAC...CGAGCATGTAAGCAGTACCAGGTAAGCCTCACCTTCTTCCACCTTTCTGAGGTGAAGCACAATAAGGTTAGAGATTCGGCAGTACTCAGAGAAGCCCAG...GGGAGCAGACTCTTGATTTATGTCTTCATTGTAGCCATTGATCCCGTTCACAGGAGCAGGGCTGTCAGCATGACCTAAGTGAAAAATTGACCACCTGA	.	.	.
TALL002	KCNJ12	PDLIM1P2(4881),RP11-728E14.3(6193)	+/+	./+	17:21419513	17:21450320	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	2	0	9	9	low	.	.	.	CCTGATTATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|GGTGTATGAAGAAAGGGCTTCAGCAGAAACAGAGGCTGAAGCCTGCGTGCTGGGGGCCGAGAGGCCAGAGGAGAATGTGATGAGACATAGAATTGGTAGTGCAGGAAGTTGGAAGATCAAGTACCG...GATGGGGTAACTGAACTGCCACCAGGGCCAAGCTGTCAGTGGCCCAGGATCTGGCGCTTGGAAGAGTTCTGAGAAGCACCCCTGGATCAAATGAGGAG	.	.	.
TALL002	ANKRD36	RP11-734K23.9	+/+	+/+	2:97247628	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	155	223	low	.	.	.	CACCTATTTAGAAAATGGGATGCAGGATTCAAGGAAGAAATTAGACCAGATGAGAAGTCAA|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAG	out-of-frame	TYLENGMQDSRKKLDQMRSQ|vmasaekgrkpmrgh*	.
TALL002	RAD1	RAD1	-/-	-/-	5:34908424	5:34912781	3'UTR	intron	duplication	upstream	downstream	0	2	0	31	12	low	.	.	.	GCGTAACATTTCAAGAGTCTAAAGGTGGCCGGGTGTGGTGGCTTTAATCCCAGCACTTTGGGAAGCCGAG|GTGATCTGCCCGCCTCAGTCTCTCTAAGTTCTGGGATTACAGGCATAAGCCACCGCAACCGGTTGCCGAATGATTTTCTTTAAAATATATATTTTTTTATTTGTTAAGGGAATTTTTAAGAATGGTGAAATTGAATTGCTGTGGGTATAAAACTAAGGAATCCCCAGAAGAATGATTTTATTTCATAGGAAAG	.	.	.
TALL002	ECHDC1	RNF146	-/-	+/+	6:127314816	6:127280231	splice-site	splice-site	inversion	upstream	upstream	1	0	0	144	52	low	.	.	.	GTGGGGCAAAAAATACTTTCTCTTCAGGATCTGATCTGAATGCTGTGAAATCACTAGGAACTCCAGAG___ACTTCCTTTAATAAGTGTTGCGCTGGTTCA...CATTGGGTGGAGGAGCAGAATTTACTACAGCATGTGATTTCAG|CACAAAGAATGAACCAGCAGTGGAAGAGAAAATACTGTAAGCTGGCTGACTGCTGG	out-of-frame	LGGGAEFTTACDFs|tknepaveekil*	.
TALL002	RNF146	ECHDC1	+/+	-/-	6:127266925	6:127290277	splice-site	splice-site	inversion	downstream	downstream	0	1	0	40	191	low	.	.	.	CTCCGAGGCCAGAGAGAAAAGACTGCGAGGTGGCCGCAGCTGTGGCCGGAGAG|GTTAATGACTCCAGAGAGTAAGATCAGATTCGTCCACAAAGAGATGGGCATAATACCAAGCTGGGGTGGCACCACCCGGCTAGTTGAAATAATCGGAAG	.	.	.
TALL003	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	6	11	2	31	45	high	.	.	mismappers(1),mismatches(1)	CCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...CTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAAC	.	.	.
TALL003	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	9	7	0	20	32	high	.	.	.	GGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAG	out-of-frame	LGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseep	.
TALL003	DHRS12	DLEU2	-/-	-/-	13:51790011	13:50029492	splice-site	splice-site	deletion	upstream	downstream	1	1	3	41	4	high	.	.	.	CATTTTTCTGCACATTGTGGACTTGTCTGATCCCAAGCAAATCTGGAAATTTGTTGAAAATTTCAAGCAGGAACATAAACTCCATGTTCTG___ATCAATAATGCAGGTTGCATGGTCAATAAAAGAGAGCTCACAGAAGATGGACTTGAAAAAAACTTTGCTGCCAATACTCTGG|GGCCTACTCTAGGTGCGGTACTTCACTATAGTTTATAAAAGATGGTCCCTGTCAGCAAAGAACTGTA...AGAATAATGGAATGTAAACTCTGGCTTGCTAACTTAAGTGTGGTAGAAGCTTGAAGGAAATGTGGACTTAAACTTATCAGAGAAGACTTATAAGAGGAT	out-of-frame	IFLHIVDLSDPKQIWKFVENFKQEHKLHVLINNAGCMVNKRELTEDGLEKNFAANTL|gptlgavlhysl*	.
TALL003	DHRS12	DLEU2	-/-	-/-	13:51790011	13:50027406	splice-site	splice-site	deletion	upstream	downstream	1	1	1	41	22	high	.	.	duplicates(1)	CGGTAACCAG___AACATTTTTCTGCACATTGTGGACTTGTCTGATCCCAAGCAAATCTGGAAATTTGTTGAAAATTTCAAGCAGGAACATAAACTCCATGTTCTG___ATCAATAATGCAGGTTGCATGGTCAATAAAAGAGAGCTCACAGAAGATGGACTTGAAAAAAACTTTGCTGCCAATACTCTGG|GTGTAAATTTTGATACCACCATTGCCGCCTTCCCCTCAAAAAAGGTGAGAACTGACTAAACTACTGGTACTTAGACCATGTGGAGAAGGAACTGAAAATGGAAA...AGAGTGTCAGATAATAGCTCATTTTAGTAGAGGGCAATAAATGCCACATGAGATGATCACCTCAGCAGAAAACTGTAAGTAACTGGGGACTTACAGGAG	out-of-frame	GNQNIFLHIVDLSDPKQIWKFVENFKQEHKLHVLINNAGCMVNKRELTEDGLEKNFAANTL|gvnfdttiaafpskkvrtd*	.
TALL003	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	6	9	1	64	18	medium	.	.	.	GCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCA	.	.	.
TALL003	ESYT2	ESYT2	-/-	-/-	7:158741677	7:158742335	CDS	intron	duplication	upstream	downstream	0	3	3	306	46	medium	.	.	.	AGTCAAACGTCCCTCTGTGTCCAAAGAGGGGAGGAAAACATCCATCAAATCTCATATGTCTGGGTCTCCAGGCCCTGGTGGCAGCAACACAGCTCCATCCACACCAGTCATTGGGGGCAGTGATAAGCCTGGTATGGAAGAAAAGGCCCAGCCgCCTGAGGCtGGCC|CCCAGGTTGTGTGGCACCAGAGGGTCAGCTTCAGGGGGGTGGCCTGCCCTTCCACACCAGGCTTATCACTGCCACCGCCCTGTTGCTGCCACCAGAGCCTGAAGACGCAGGCCTCGGCGATGCCCCAGCTACTTGGCAGGCTGAGGCGGGAGGATCTCTTGAGGCCAGGAGCTTGcGGTG	out-of-frame	VKRPSVSKEGRKTSIKSHMSGSPGPGGSNTAPSTPVIGGSDKPGMEEKAQPPEAG|pqvvwhqrvsfrgvacpstpglslpppccchqslktqasampqllgrlrredllrpgacg	.
TALL003	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	1	70	207	low	.	.	low_entropy(1)	CCTAGCAGTTCTCTTGGTGTTCCTGCGTGgTCAAAGGATGACTGCCACACtCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCC	.	.	.
TALL003	STK31	AC009508.1(6903),RNA5SP228(228467)	+/+	./+	7:23832343	7:23904238	CDS	intergenic	deletion/read-through	downstream	upstream	1	4	2	4184	15	low	.	.	low_entropy(1),mismatches(1)	CAAAGGAGCAATCAGTTCCAAACCCAGAAAAAGATACTGAATACACCCTATATAAAAAGGAAGAAGAAATAAAGACGGAGAACTTGGATAAATGTATGGAGAAGACAAGAAATG|TTTCTAGGAGCTAATACTGTGTCCAGAATTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGACGCCGTGGACCCTCGCGGTG...___ATGTGGAAAATTGAGGCTCAGAAAAAATGAACTTGTTGAAATCTATCCAGGTG___GCACATG...GTGTACAGATGGGTGCTGAGATTCAAGTGAATGTGCTCATGAACATGTGGATGTTGG	out-of-frame	KEQSVPNPEKDTEYTLYKKEEEIKTENLDKCMEKTRN|vsrs*	.
TALL003	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	0	107	151	low	.	.	.	TTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL003	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	0	69	68	low	.	.	low_entropy(1)	GTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAG	out-of-frame	VVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL003	AC005187.1(51773),ENPEP(15410)	ENPEP	./+	+/+	4:110350323	4:110488541	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	43	14	low	.	.	.	CCTAGCAGTACCAGAAGTAAATGGTTTAAAAAAATATTGCATTATGGAGATGTGAGCTATAGAAAGACTATTGAGGAGGTTGGAGAAACTACTACTGA...ATTTAAG___GGATGGAAGCTTACTTATGCCAGGgGGCTGATGGCCAAGGCCAAACCCAAAGACCACTGCAGCCCAGTCCTCAGGAAATGAAGTCCATCTCTGCAGCACTGGAGGAGG|GAGCATAGcGGCCACCGATCATGAACCAACAGATGCCAGGAAATCTTTTCCTTGTTTTGATGAGCCCAACAAAAAGGCAACTTATACAATATCTATCACCCATCCCAAAGAATACG	.	.	.
TALL003	ZNF763	ZNF440(168),CTC-499B15.8(5872)	+/+	./+	19:11980394	19:11835369	3'UTR	intergenic	duplication	downstream	upstream	0	0	3	9	25	low	.	.	mismappers(1)	CCTGCTTCTGTAATCCTAGCTAGTTGGGAGGCTGGCACAGGAGAATCGCTTGAATCTGGGGGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCTAGCCTGGGCAACAGGAGCAAAACTCCGTCTCAAAAAAAAAAAAA...|...AAAAAAAAAAAAAAAAAAAAGACTTGGCCTTGTGGTGAGGGG	.	.	.
TALL003	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	2	1	0	4	6	low	.	.	.	GTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACC	out-of-frame	LFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaal	.
TALL003	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	2	0	80	6	low	.	.	.	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCC	.	.	.
TALL003	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	57	4	low	.	.	.	GGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGG	out-of-frame	ANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL003	SHOC2	PDCD4	+/+	+/+	10:110965061	10:110883003	splice-site	splice-site	duplication	downstream	upstream	1	0	0	125	340	low	.	.	.	CTGGATTCTCTCACCACTCTTTACCTTCGCTTTAATCGTATAACTACTGTGGAAAAGGACATCAAAAACTTGTCAAAACTCAGCATGCTTAGCATTCGAGAGAACAAAATTAAACAACTACCTGCTGAAATTG|GTGGTGCAGGAGGCAAAGGTGTCTGGGGTACACCTGGACAGGTG	in-frame	LDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEI|gGAGGKGVWGTPGQ	.
TALL004	LEF1	HADH	-/-	+/-	4:108163568	4:108021920	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	76	98	31	812	285	high	.	.	duplicates(52),low_entropy(42),mismappers(2),mismatches(19)	CTCAGAAGGAAAAGATCTTCGCCGAGATCAGTCATCCCGAAGAGGAAGGCGATTTAGCTGACATCAAGTCTTCCTTGGTGAACGAGTCTGAAATCATCCCGGCCAGCAACGGACACGAG___GTGGCCAGACAAGCACAAACCTCTCAGGAGCCCTACCACGACAAGGCCAGAGAACACCCCGATGACG___GAAAGCATCCAGATGGAGGCCTCTACAACAAGGGACCCTCCTACTCGAGTTATTCCGGGTACATAATGATGCCAAATATGAATAACGACCCATACATGTCAAATGGATCTCTTTCTCCACCCATCCCGAGAACA|CCTGGGCCATGGTGTCATGTCGTGACATCAAGAGAAGTGAATGGATGGAAACAGGAAAAGACACAGTGAAGATGGAGAAGAGGAGCAGGACGAGAAAGACCAGAAGCCACCCTGCGGGTACCACAAATCAAACAGAATCCCAGAGCTGTTTGAAAGGAGGTCTAAAAAGTCTCCATCAAAACCACAGACTGAGCTGGGGGACAAACACTGCTGACTATGGAG...___ATGACGAAACTGAGGACCTTTCCAAGGCTGGAGGTGGTGAGGGGGTCAGCACCAGGCCCAGGCCTCCTGACTTTCTCCAGTGATCCTTCTTCTGTACCAG	out-of-frame	QKEKIFAEISHPEEEGDLADIKSSLVNESEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRT|pgpwchvvtsrevngwkqektq*	.
TALL004	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	12	13	2	58	47	high	.	.	duplicates(7),low_entropy(3),mismatches(1)	CCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGG	out-of-frame	PILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL004	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	10	8	0	48	43	high	.	.	duplicates(3),low_entropy(2),mismatches(3)	GCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATaTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTG...GGGgcGGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGC	.	.	.
TALL004	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	14	0	68	36	high	.	.	duplicates(9),low_entropy(1),mismatches(1)	CCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGcCCC	.	.	.
TALL004	FGFR1OP	FGFR1	+/+	-/-	6:167033971	8:38418373	splice-site	splice-site	translocation	downstream	downstream	5	7	0	83	36	high	.	.	duplicates(6),mismappers(1)	TGAAATTGATCAGTGATAAAATTGGATCACTTGGATTAG___GAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAG___TACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATAAG|GTGTCTGCTGACTCCAGTGCATCCATGAACTCTGGGGTTCTTCTGGTTCGGCCATCACGGCTCTCCTCCAGTGGGACTCCCATGCTAGCAGGGGTCTCTGAGTATGAGCTTCCCGAAGACCCTCGCTGGGAGCTGCC	in-frame	KLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDK|VSADSSASMNSGVLLVRPSRLSSSGTPMLAGVSEYELPEDPRWEL	.
TALL004	RP11-517H2.6	FGFR1	+/+	-/-	6:167033971	8:38418373	splice-site	splice-site	translocation	downstream	downstream	5	7	0	83	36	high	.	.	duplicates(6),mismappers(1)	TGAAATTGATCAGTGATAAAATTGGATCACTTGGATTAG___GAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAG___TACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATAAG|GTGTCTGCTGACTCCAGTGCATCCATGAACTCTGGGGTTCTTCTGGTTCGGCCATCACGGCTCTCCTCCAGTGGGACTCCCATGCTAGCAGGGGTCTCTGAGTATGAGCTTCCCGAAGACCCTCGCTGGGAGCTGCC	.	.	.
TALL004	LEF1	RP11-286E11.1	-/-	-/-	4:108163568	4:107910549	splice-site	splice-site	deletion/read-through	upstream	downstream	8	12	0	812	29	medium	.	.	duplicates(6)	GTTTAAGAACACCTCAGATCTGCCTTCTCTATCCCAATGGCAGAG___GTGGCCAGACAAGCACAAACCTCTCAGGAGCCCTACCACGACAAGGCCAGAGAACACCCCGATGACG___GAAAGCATCCAGATGGAGGCCTCTACAACAAGGGACCCTCCTACTCGAGTTATTCCGGGTACATAATGATGCCAAATATGAATAACGACCCATACATGTCAAATGGATCTCTTTCTCCACCCATCCCGAGAACA|GTCGATTTCTCATTGTCTTCACCAATCTTCTGAACCCGTGAATACTTTTTGCATGATGATTTGAAGCAGCCAGGAGGCCAAGACAGCGGCCAGGAGAAGCAGCAAGGAATTGAGCCTTGTACATTTTTCTCAAAAAAATAAAAGATGGGGAACCACCATGCTCGAG	out-of-frame	MAEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRT|vdfslsspif*	.
TALL004	APLN(65582),XPNPEP2(18455)	XPNPEP2	./+	+/+	X:129720519	X:129749038	intergenic	intron	deletion/read-through	downstream	upstream	6	7	4	65	69	medium	.	.	duplicates(2),low_entropy(2),mismappers(2)	GCCTCACCACGTTCTTAAACAAATTGGCACTGACCCTGGTGACAGACTTGATCATTTCCCTTTGCTTCGTGATTGTGTTAAGTGACTGCCAAAGGCCTGT...CCTtAGGACGGTGAGTGGGAGCCCATCTGCTCCTGGAGCGCTTCCTTTCCTTTATTGTGCTATTTTGGCCTCAATTTCCCATTTGGACAGGAGCATCTTCCAGCCGGTGGGGAAAGGGAGAGGGTGGAGAGGGGCGCCACAGCCTTCCTTCATTTCTCACTCATATCCCTGGTTTCT|CTGTACGCACCAGACCATTGAAATTTGGGTTCATTTGGTTTCTCAGAAAGGTATCATATTCCTGAAC___ACTTTTTTGGGGCTCCTTTGCTTCTAGGGAGCACTTGGCAGGAGAAAGTATCTGGCGTCCGAAGCCAGATGCAGAAGCATCAAAAGGTCCCGACTGCCGTCCTTCTGTCGGCGCTTGAGGAGACGGC___ACTGTCAGGACAGC	.	.	.
TALL004	PPP6R2	SPG7	+/+	+/+	22:50394135	16:89512948	splice-site	splice-site	translocation	downstream	upstream	0	2	0	132	71	medium	.	.	.	CACACAGGATCCGCCCCTGGACATGGAGGAGAAGGTCCGCTTCAA|GTGGTACTTTCTATTTTAACACCTCAAGGTTGAAGCAGAAGAATAAGGAGAAGGATAAGTCGAAGGGGAAGGCGCCTGAAGAGGACGAAG___AA	out-of-frame	TQDPPLDMEEKVRFk|wyflf*	.
TALL004	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	7	2	32	16	low	.	.	duplicates(4),low_entropy(1)	CCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGC	.	.	.
TALL004	KLRB1	DDX12P(1504),RP11-726G1.1(17819)	-/-	./-	12:9598046	12:9449733	splice-site	intergenic	deletion/read-through	upstream	downstream	1	6	0	3251	9	low	.	.	.	TCCGAGAGAAATGCTTGTTATTTTCTCACACTGTCAACCCTTGGAATAACAGTCTAGCTGATTGTTCCACCAAAGAATCCAGCCTGCTGCTTATTCG...TCTGTTTTGGATTGGATTAAATTTTTCATTATCAGAAAAGAACTGGAAGTGGATAAACGGCTCTTTTTTAAATTCTAATGA|GTCTGCACTGCCTTTACGAGCTGTAACACTCACTGTAAATGTCTGCAGCTTCACTCCTGAAGCTAGTGAGAGCACGAACCCACCGGGGTGAACGAGCAACTCCAGTACACGCCGTCTTAAAAGCTGTAACgCTCAGGCGAAG	out-of-frame	LFWIGLNFSLSEKNWKWINGSFLNSNe|salplravtltvnvcsftpeasestnppg*	.
TALL004	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	3	3	0	335	155	low	.	.	.	CAGCACACCCTtGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL004	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	1	82	137	low	.	.	duplicates(2)	GGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCaAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTaTGCGTGGCTGAGCATCCAGTGT...CAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGC...GAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGC	.	.	.
TALL004	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	0	41	4	low	.	.	.	AACTTGTTTAGAGGCGTCATTGTGGCTCTTCCTGGtAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTG	out-of-frame	NLFRGVIVALPGNSSLAPANGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL004	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	1	26	17	low	.	.	duplicates(3),mismappers(1),mismatches(1)	CCgCgGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATG...AGGACCTGACAGCTTCCGCTTCTTTACCAaGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAG	.	.	.
TALL004	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	2	0	0	7	17	low	.	.	mismappers(3)	ATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAaGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGG	.	.	.
TALL004	MRTO4	RP4-657E11.10(1318),AKR7A2(4744)	+/+	./+	1:19259047	1:19299221	3'UTR	intergenic	deletion/read-through	downstream	upstream	3	0	0	126	1	low	.	.	duplicates(1),mismappers(3),mismatches(1)	GGAGACGACTTGCCAGAGAGCGCATCTGAGTCCACAGAAGAGTCAGACTCAGAAGATGATGACTGAAAGGGACTCGGGACTGAAGGTCTCCTGGAAGCTTCTGGGTCTCACTGGACCATCAGGACTGCTGCCGCCCCTCTGGAGAGAGCAGCTTTTTATTTGTCTGTAGACAGGGAACATGATGGGCACTGACCTCCTGTAAAGAATAAAACTGTGGGCCGGGCGCGGTGGCTCACGCCTGGAATCCCAGCACTTTGGGAAGCCGAGGTGGGCAGATCATAAG|GTCAGGAGATTGAGACCATCCTGGCTAACAC	out-of-frame	GDDLPESASESTEESDSEDDD*kglgteglleasgshwtirtaaapleraafylsvdrehdgh*ppvknktvgrarwltpgipalweaevgrs*|gqeietilan	.
TALL004	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	66	134	low	.	.	duplicates(1)	AAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGT...AACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTaTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGT	in-frame	NRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGAiSDVWGRKSFLLLT	.
TALL004	GIMAP1-GIMAP5	GIMAP6	+/-	-/-	7:150720046	7:150630142	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	1	2	0	725	625	low	.	.	mismappers(1)	CCCCAGCCTGGAGAAGAACCGTCTCTGGCCCAGGATGCTGTTCCCAGTGGCGCTCTTCCCGGCCCCTGTTCTCCCAACAAGGATGAGCCTCCGCGTGGACTCCTGCCGGGACTGAGCGTTCTCTTCTAAACCT|ATGGAGGAAGAAGAATATGAACAAATTCCCCAGGAGAATCCCCCAGAAGAGCTGTCCCAGGATCCTGTGCTGGAGCTGTCAGGAG___GTCTAAGGGAGAAAGAACAGAAGACCCCAAGGAGACTGAGGCTCATTCTCATGGGGAAAACAGGGAGTG	.	.	.
TALL004	GIMAP1	GIMAP6	+/-	-/-	7:150720046	7:150630142	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	1	2	0	725	625	low	.	.	mismappers(1)	CCCCAGCCTGGAGAAGAACCGTCTCTGGCCCAGGATGCTGTTCCCAGTGGCGCTCTTCCCGGCCCCTGTTCTCCCAACAAGGATGAGCCTCCGCGTGGACTCCTGCCGGGACTGAGCGTTCTCTTCTAAACCT|ATGGAGGAAGAAGAATATGAACAAATTCCCCAGGAGAATCCCCCAGAAGAGCTGTCCCAGGATCCTGTGCTGGAGCTGTCAGGAG___GTCTAAGGGAGAAAGAACAGAAGACCCCAAGGAGACTGAGGCTCATTCTCATGGGGAAAACAGGGAGTG	.	.	.
TALL004	MTAP	CDKN2B-AS1	+/+	+/+	9:21859425	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	100	21	low	.	.	duplicates(2),mismatches(1)	AAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGT	out-of-frame	NANKAKSLLLTTIPQIGSTEWSETLHNLK|dylprhfkgfqerilvsml*	.
TALL004	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	0	1	1	10	87	low	.	.	mismappers(1)	CCCGAGCCTCCTGGGAGGGAAGGGGCCATGGCAGTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCAGCCTGCTCTTCCTGGTGGCCCATCTCGCCCTCCAGATCTGCCTGCATATTGTGCCCCGCCTGGAC	.	.	.
TALL004	POC1B	DUSP6(5098),RP11-823E8.3(5098),RP11-1109F11.3(9438)	-/-	./-	12:89457119	12:89358369	intron	intergenic	deletion/read-through	upstream	downstream	0	0	2	16	9	low	.	.	duplicates(1)	GAAGCACAATTGCATTCAATATTTTTGTGTGTACTTTGCATGTGATTGTAATTTAAAAACCTGGAGAAAT...|...AGCTATATGTACTACTCACACCTGCGTAAATAAAGCAACACAAGATGGAGAGAAAAGTCACCAGAGGAAACAGCCCACACAGGGAG	.	.	.
TALL004	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	0	0	2	23	2	low	.	.	mismappers(1)	GCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAA	out-of-frame	QGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL004	LINC01588	SWAP70	-/-	+/+	14:50006540	11:9750688	exon	3'UTR	translocation	upstream	upstream	0	0	2	5	41	low	.	.	duplicates(1)	AAAAAAAAAAAAAAATTACAGTCATCTCCCAGAAAAATCAAGAAGGAAGAACCTTGGAGGTTCAACCTATAGAAGATATGTTCTCATGGAATAAACC...|...CAGCGTGTTTCCTTTTCCGAGTATGTGCTGTTAAACTAGATTGGCCGGTTCGCTTTCCATTTCCTGACACTTGACATGGAATGCCTTTGACCATTGGTGC	.	.	.
TALL004	TXNL4B	TXNL4B	-/-	-/-	16:72085982	16:72087880	3'UTR	intron	duplication	upstream	downstream	2	0	0	23	5	low	.	.	.	TGAGCAGACAAGTTTGTTTTATTTTGGAGCCTTTTTGGCTCTGGCTTTTAAACATTGTCCTGGTTGGCTCATTTAATTTTTTTTTTTTTTTTTGAGACCGAGTCACTCTTGTC|GCCACTGCACTCCATCCTGGGCAACAGAGCTGCCGTCTCAAAAAAAAGATTAGCCAGG	.	.	.
TALL004	RP11-1398P2.1	MAEA	-/-	+/+	4:1580158	4:1339074	splice-site	splice-site	inversion	upstream	upstream	2	0	0	18	192	low	.	.	.	CGAGGCTGCCTGGCCTCCGCGGTTGGTTCGGCGGCCGCGGGGCTGCAGCTCCCGGCTCGCACTCCATCATCGACGGATGACAGCGGGAACGGTGGGAGTTCATTACAGGGACCATGAATTGTTGGAG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAG	.	.	.
TALL004	DENR	RRM1	+/+	+/+	12:122753807	11:4101993	splice-site	splice-site	translocation	downstream	upstream	1	0	0	277	104	low	.	.	.	GAAATGGCTGCTGACATTTCTGAATCCAGCGGGGCTGACTGCAAAGGAGACCCAAGGAACAGTGCCAAGTTAGATGCCGATTACCCACTTCGAGTCCTTTATTGTGGAG|ATGGCCGCCAAGAACGAGTCATGTTTGACAAAATTACATCTCGAATCCAGAA	in-frame	MAADISESSGADCKGDPRNSAKLDADYPLRVLYCG|dGRQERVMFDKITSRIQ	.
TALL004	MIR181A1HG	LINC01221	-/-	+/+	1:198937226	1:199076524	splice-site	splice-site	inversion	upstream	upstream	1	0	0	45	200	low	.	.	.	TGAAAACAGGGATTCTGCACCTGCATCATGGACAGTCTGGCAAAAGCCTCTGCTCTGCCTCCGGGGACAAGAAACTAGAGCAAATAACCGTTTTGAAATT|TGTTGATTACTGGCAGGCTTCTCTGGTCATCTTTCTCCCTCCACTTCTATCAACATGGAGTTTTGTACTCAGC	.	.	.
TALL004	MIR181A1HG	LINC01221	-/-	+/+	1:198937226	1:199041556	splice-site	splice-site	inversion	upstream	upstream	0	1	0	45	217	low	.	.	.	AGAAACTAGAGCAAATAACCGTTTTGAAATT|ATGAGAATTGTGCATCAATGTTCAAGTCCCAAGAGACGTTATCAGTCTGAACAGCCCAGTGAACAAGTATTTGTGACTCTCCTTCCAAATGAAATGTTCTACAGAAAGG	.	.	.
TALL006	RP11-61O1.1	RANBP17	-/-	+/+	14:98166070	5:171293883	intron	splice-site	translocation	upstream	upstream	10	165	16	1001	1911	high	.	.	duplicates(44),inconsistently_clipped(6),mismatches(1)	GGCAACTGAAGCATAGAGAAGTGATATAATCCCCCAGGTAGCCCCCCTTGACCCTGGTGGAGACAATATTCAAACTGAGAGCCCCCGCACTCTCACCTCACAGACGGAGCAGACAGATCAAATGGAAAGGCTCCCCCATCCTGTCCTCTACACCACCTTGCAGCTGGGCCTCAGCAACTGG|ATGATGTCTGTCCTCATGAACACCATTGTCTTTGAAGACTGTCGGAACCAGTGGTCAGTATCCAGGCCTCTCCTGGGGCTCATCCTGCTCAATGAGAAG___TATTTCAGTGAACTGAGAGCAAGTTTGATAAACAGCCAGCCCCTCCCCAAGCAGGAGGTCCTTGCCCAGTGCTTCAGAAACCTAATGGAAGGAGTGGAGCAGAACCTGTCCGTCAAGAACAGAGACAG___GTTCACCCAAAATCTGTCTGTATTCAGAAGAGATGTGGCAGAGGCGTTGCGCAGTGATGGCAACACTGAACCATGCAGTCTCGACATGATGAGCTGACCCGACTTTTCTGACCATGTGCGGAG	.	.	.
TALL006	RP11-61O1.1	RANBP17	-/-	+/+	14:98205023	5:171293883	splice-site	splice-site	translocation	upstream	upstream	0	3	5	52	1911	medium	.	.	.	CTTTGAAGATGAAAACAATTCAACAACCTTCTTCTCCATGCCTTTCAGAATGAATTTCTTCTTCTCCCGGATTTTTCTTTCAATTCTTGGCTGAAGTTTCAAGCTGTGATCACTCCAG|ATGATGTCTGTCCTCATGAACACCATTGTCTTTGAAGACTGTCGGAACCAGTGGTCAGTATCCAGGCCTCTCCTGGGGCTCATCCTGCTCAATGAGAAG___TATTTCAGTGAACTGAGAGCAAGTTTGATAAACAGCCAGCCCCTCCCCAAGCAGGAGGTCCTTGCCCAGTGCTTCAGAAACCTAAT...___GTTCACCCAAAATCTGTCTGTATTCAGAAGAGATGTGGCAGAGGCGTTGCGCAGTGATGGCAAC	.	.	.
TALL006	RP11-61O1.1	RANBP17	-/-	+/+	14:98205023	5:171284513	splice-site	splice-site	translocation	upstream	upstream	0	1	6	52	33	medium	.	.	.	CTTTGAAGATGAAAACAATTCAACAACCTTCTTCTCCATGCCTTTCAGAATGAATTTCTTCTTCTCCCGGATTTTTCTTTCAATTCTTGGCTGAAGTTTCAAGCTGTGATCACTCCAG|GTGGAGTTTCACCATGTTTCCCAGGCTGGTCTCGAACTCCTGAACTCAAGCAATCTGCCCACCTTGGCCTCCAAAGTGCTGGGATTACAGACGTGAGCCACGCGCCCAGCCTGAGGCCATGTTCCTAAAGCTCTGAATTTATCCACAG	.	.	.
TALL006	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	15	10	0	53	76	high	.	.	duplicates(1),mismatches(1)	GAAAGACTGAT[t]TTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAGGTGAGTGGGGCGGGG	.	.	.
TALL006	BCL11B	RP11-61O1.1	-/-	-/-	14:99231345	14:98080525	splice-site	splice-site	deletion	upstream	downstream	3	3	6	24	545	high	.	.	.	CCCATAGCTGCCTCCTCCCACCCTCACTCATCCGTGATCACTTCACCTCTGCGTGCCCTGGGCGCTCTCCCGCCCTGCCTCCCCCTGCCGTGCTGCAGCGCGCGCCCGGTCTCGGGTGACGGGACTCAGGGTGAGGGTCAGACGGAGGCTCCCTTTGGATGCCAGTGTCAGTTGTCAG|GCTTTTAATTTCAGTCTAATTCAAGTCAGCAGCATAGGGCAGCTCCTGGGAAATTGGTTTACACATGCGGACAAGCCCAGTAGCCCAGAGCTAACCCACTCACCATCCCTGACCACAGAGGAGCAGATAAGGAAGCAAGATTTGTCGGG___ATGGAGTCTCGCTCTGTCACCCAGGCTGGAG	out-of-frame	PIAASSHPHSSVITSPLRALGALPPCLPLPCCSARPVSGDGTQGEGQTEAPFGCQCQLS|gf*	.
TALL006	BCL11B	RP11-61O1.1	-/-	-/-	14:99257471	14:98080525	splice-site	splice-site	deletion	upstream	downstream	3	0	4	91	545	medium	.	.	.	GGGACATCCTGGTTTTTATAGAGCACAAAAGGAAGCAGTGTGGCGGCAGCTTGGGTGCCTGCTATGACAAGGCCCTGGACAAGGACAGCCCGCCACCCTCCTCACGCTCCGAGCTCAGGAAAGTGTCCGAGCCGGTGGAGATCGGGATCCAAGTCACCCCCGACGAAGATGACCACCTGCTCTCACCCACGAAAGGCATCTGTCCCAAGCAGGAGAACATTGCAG|GCTTTTAATTTCAGTCTAATTCAAGTCAGCAGCATAGGGCAGCTCCTGGGAAATTGGTTTACACATGCGGACAAGCCCAGTAGCCCAGAGCTAACCCACTCACCATCCCTGACCACAGAGGAGCAGATAAGG	out-of-frame	DILVFIEHKRKQCGGSLGACYDKALDKDSPPPSSRSELRKVSEPVEIGIQVTPDEDDHLLSPTKGICPKQENIA|gf*	.
TALL006	ORC4	RNA5SP121(786),SNRPGP8(14572)	-/-	./+	2:147952373	2:227763938	splice-site	intergenic	inversion	upstream	upstream	2	0	2	37	8	high	.	.	.	CGAACTAGCAGTTGCCCAGTGATCTTCATATTAGATGAATTTGATCTTTTTGCTCATCATAAAAACCAAACACTTCTCTATAATCTTTTTGACATTTCTCAGTCTGCACAGACCCCAATAGCAGTTATTGGTCTTACATGTAGATTG|AAAATCATGAAACAAGGAATAAAACTATGATTTTGTACTGAGACCACAAGACAGCACAGTTTTACACAGACTGCACACACCCATCTCTCTGCCACTCTGTCTAGAC	out-of-frame	RTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRL|kimkqgikl*	.
TALL006	ORC4	SLC19A3(44294),RNA5SP121(746)	-/-	./+	2:147952373	2:227762306	splice-site	intergenic	inversion	upstream	upstream	2	0	1	37	8	high	.	.	.	CTTTGCTGAAAACCTTTCATTTCTTCTGGAAGtTTTAAAAAAAG___GTGACCGAACTAGCAGTTGCCCAGTGATCTTCATATTAGATGAATTTGATCTTTTTGCTCATCATAAAAACCAAACACTTCTCTATAATCTTTTTGACATTTCTCAGTCTGCACAGACCCCAATAGCAGTTATTGGTCTTACATGTAGATTG|GGAGAATAATGGCTTCTTCAATGATTAACACGGTTGATAGCTACTGCTCTGTCTTTGAAGAAGCACATGGTATTTCGTGGAAAT___AAAATCATGAAACAAGGA	out-of-frame	FAENLSFLLEvLKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRL|ge*	.
TALL006	MTAP	CORO2A	+/+	-/-	9:21854870	9:98157660	splice-site	splice-site	inversion	downstream	downstream	1	0	1	56	7	high	.	.	.	GGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|ATGTCATGGCACCCCCAGTACCGGAGCTCCAAGTTCCGTCATGTCTTTGGCAAACCAGCCAGCAAGGAGAACTGCTACGACTCCGTGCCTATCACCCGCAGCGTTCACGACAACCACTTCT	in-frame	AESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|MSWHPQYRSSKFRHVFGKPASKENCYDSVPITRSVHDNHF	.
TALL006	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	8	1	40	22	medium	.	.	duplicates(1),low_entropy(2),mismatches(1)	CAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTG...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___TGTCTGAG	.	.	.
TALL006	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	4	2	1	61	82	medium	.	.	.	ACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAAC	out-of-frame	RLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL006	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	1	83	82	medium	.	.	duplicates(1),low_entropy(1)	GTGGCTGTCCCTAGTAATTTTGATGACAGGAGTTGCTTTTGTACAG___TGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTaGTTCTCAATTT...AAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAAC...ACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGC	in-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPK	.
TALL006	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	97	82	low	.	.	.	GGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCAT...ATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAAC	out-of-frame	GVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL006	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	1	61	26	medium	.	.	.	GGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCG...TAGCTAGCTGGTGACGCCGGAGCACGAAGTgGTACAGGTAGCCAGCAGCACCCACGCGAGCCCGCGGTTACCCTGGCCGCGCGGCTACTGTAGAGTGGG	out-of-frame	IVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
TALL006	LINC01226	LINC01225	+/.	+/.	1:31523625	1:31524544	exon	intron	duplication	upstream	downstream	1	2	10	83	56	low	.	.	.	.	.	.	.
TALL006	MTAP	RP11-408N14.1	+/+	-/+	9:21859425	9:22210664	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	4	3	2	69	21	low	.	.	low_entropy(1),mismappers(1)	GATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTaTTGTGtCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGT...CTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GAAAAGAAAAATACGACACATAGCCATGATTGAAGACGTGTACCTTCATCTGAGAAGACATCTGCAAATATTCTGGTCACTATTAAACTATATCCAATTTTTAAGTTGTTTATTTTTAAGTGAGGGCTGTTTTTATAGATAAAGTTTAAAAAGTCTGGC...___GAAAAGGAGCTGATTGTTAATGGAAGAAGGAAGAAATACAAGTTTGTTGGGTATTTAGTATATGCCAGAC	out-of-frame	LAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|ekkntthshd*	.
TALL006	LZTFL1	SLC6A20	-/-	-/-	3:45826252	3:45782219	3'UTR	CDS	deletion/read-through	upstream	downstream	1	0	7	514	27	low	.	.	.	AGCAAACAGCAGCTTATCGAAACATGAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGGtA|g|TTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCG___GCGG	out-of-frame	QTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED*n*rfpleattckhtssltsg|s|FLVPYIIMLIVEGMPLLYLELAVGQRMRQGSIGAWRTISPYLSGVg	.
TALL006	RP11-1023L17.1	C1QTNF3	-/-	-/-	5:34169019	5:34051963	exon	5'UTR	deletion/read-through	upstream	downstream	0	0	4	24	33	low	.	.	.	AAGGAAACACTGGACCTCATTATGGATTTACTTTTGGGATACACTCATCATTCCAGAGGAGGGTAAAAGGCTGAGAAGCTTAAG___TTCTGCAGGCTGGAAATCaAAGATGAAGTCACCTGTAGTTCAGTGTCTGCGTCTAAGAGAGTACTTTGTTGCTGCACCCGCCAGAGGGAAGAAATACTGTATCTTCTCATGAAGGAAGGAACCGAAGGctGGAAT...|...CCTCCACCCAGTCACTCAAGGACCCAGGCTGACAGAGACTCTGCCATCATAGCTCCACTACGTGGAACACATGGCCACCAAA___TCTCCACAAACCGGAGG	.	.	.
TALL006	RP11-499P20.2	RN7SKP189(4499),CYCSP44(114646)	-/-	./+	10:18513110	X:145061936	3'UTR	intergenic	translocation	upstream	upstream	0	0	3	30	5	low	.	.	low_entropy(1)	CTCTTATTCTGTGCAACAACAATGAACCATTTCTCAGTCGGATTGTGACGTGGGACGAAAATTGGATTTTATATGACAACCACTGACAACCAGCTCAGCTGTTGGACTGAGAAGCTCCAAAGCCAAACTTGCACCAAAAAAAAAAAA...|...AAAAAAAAAAAAAAAAAAAAAAAAGGTTATGGTCACTGTTTGGT	.	.	.
TALL006	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	3	0	18	14	low	.	.	low_entropy(1),mismatches(1)	CAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAG	.	.	.
TALL006	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	81	7	low	.	.	mismappers(1)	GTTCGACAATATTCCTTGATGACAGCACAGCCATCCAGCATTATCTTACAATGACAATAATATC___TGTGtCCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACCTGCTACCACGGCCCTTCCCCAGTCTCAATAAAAAGCC	.	.	.
TALL006	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47997739	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	81	1	low	.	.	low_entropy(1)	CTCAAACAGATG___TTGTAGAAATAAGAAGAAGCAACTGTAaAAACCAT___GTATCTACTGAGCGTTTCAGTCAACAATACAGCTCGTGTTCGACAATATTCCT...GTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|TTCATGCCGTGGAGGAAGTGGTGAAGGAGGTGGTGGGACATGCCAAGGAGACTGGAGAGAAAG___CCATTGCTGAAGC	.	.	.
TALL006	RP11-404O13.5	CD1C	-/+	+/+	1:158203875	1:158291134	exon	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	2	0	16	89	low	.	.	.	ACCAAATTGAGTTTGTCTGCTCTTCTGAAAGTtGTGAGTTAAGATAAGGGTCCCAACAGATGAACAGCTGTTACTGCAG|CATCCCAGGAACACGTCTCCTTCCATGTCATCCAGATCTTCTCATTTGTCAACCAATCCTGGGCACGAGGTCAGGGCTCAGGATGGCTGGACGAGTTGCAGACTCATGGCTGGGACAGTGAATCAGGCACAATAATTTTCC	.	.	.
TALL006	BCL11B	AL162151.3(116959),AL162151.4(67986)	-/-	./-	14:99218005	14:99090430	intron	intergenic	deletion/read-through	upstream	downstream	0	0	2	7	2	low	.	.	mismappers(1)	GCAATGATTATTATGAGAATTAACAGAGTTGAATAGGAGCTAAAAATAACTGGA...|...GGTTTTTTTTTTTTTTTTTTTTTTTGAGACaGAGTCTCaCTCTGTTGCCCAGGCTAGAG	.	.	.
TALL006	REEP3	REEP3	+/+	+/+	10:63622691	10:63609414	3'UTR	intron	duplication	downstream	upstream	0	2	0	29	5	low	.	.	.	TATCATCTGAAGTTGCCTAATAAGGTCATGTGAGTCAAGAACTTTATCTGTGGGAGCTGATT|TGCACTCCAGCTTGGGCGACAAAGCGAGACTCTGTCTC...AAAAAAAAAAAAAAAAGTTGCCCTTGGCCGGGCTTAGTGGCTCACATCTAAAATCTCAGCACTTTGGGAAG	.	.	.
TALL006	Y_RNA(4459),RP11-973H7.1(9374)	CEP76	./-	-/-	18:12765277	18:12701113	intergenic	splice-site	deletion/read-through	upstream	downstream	1	1	0	82	21	low	.	.	.	TGGAGAGGGTGGTTTCCTGATTCgCaGACAAcGTCTCCTCCCTGTGTCCTCACATGGCCTCTACTCTGTGCGCACCTGGAGAGAGAGCGCCC?GTCCCTCCCTCTTCTGATGAGGTCACCAGCCCTATCAG|ATGGATGTCCATGGTAGAATAAGAGAAATCCTTG...CATTGACGATGTGATGAAAGAACTTAATTTTGTTACT___GACAGTGTTGAGCAAGAACTCCCTTCCTCTCCAAAACAACCTATTTGTTTTGATAGACAATCG	.	.	.
TALL006	KLHL24	TCF3	+/+	-/-	3:183635747	19:1650287	splice-site	splice-site	translocation	downstream	downstream	1	0	0	19	113	low	.	.	.	CTGGAGGAGACGCCGGCGCTGGAGAGTGCGCTGCGCCGCCCGCCGCTGAGGGACCGCGGGGTTAGCCACTGCTGGCTGCTTCCAGTGTTCGCCGAGAG|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGC	.	.	.
TALL007	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	7	52	0	181	91	high	.	.	duplicates(1),low_entropy(5),mismatches(1)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTC	.	.	.
TALL007	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	6	5	0	22	56	high	.	.	.	CCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...TTTTTTTTTTTCGTCGCTCTCGGGATCG?TCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTT...___...ATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCAC	.	.	.
TALL007	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	1	3	0	191	35	medium	.	.	mismappers(3)	CGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACaAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGG...GGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAAC...GGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGC	.	.	.
TALL007	ZZZ3	NDUFB2	-/-	+/+	1:77683262	7:140702866	splice-site	splice-site	translocation	upstream	upstream	2	0	0	8	675	medium	.	.	.	CCGCGGCGCCGCTATCGAGCTTCCTGCAGCGGTGGCCACCCGAGCAAGTGCCGTGGCGGGGGCGGAGAGCGGCCACGGCGGCGGCGCCTCCCCAAGTGGCCCGTTGCGTCCGACCCCGCGTGAAAG|TGCCGGTGGTGGTGTGCACATTGAGCCCCGGTATAGACAGTTCCCCCAGCTGACCAG	.	.	.
TALL007	PTEN	MED6P1(122562),RP11-129G17.2(86744)	+/+	./+	10:87865108	10:88172385	exon	intergenic	deletion/read-through	downstream	upstream	0	0	12	52	67	low	.	.	mismappers(16)	TTGGCTTAGGCCCTAGATCAAGGGTTTAGATCAGAATAAAATGAAAATTAGTGTTGCACGTACGCATATTGCATCAGAATCTTGCAGTGATTGTTTTAGTTTCCTGAGTTGCATTGATAGATTCTTTTAAAATATGACTGATTTGCATAACTTTAGAAGCAGAATCATTTTCAGTATATATGG...|...GATATCTCATTGTGGTTTTGATTTGCATTTCCCTGATGATCAGTGATGTTAAGCATTTTTTTCATATACTTGTTGGCAATTTGTATATTTTCATTTGAGAAAGGTCTATTCAGATCCTTTCTCCATTTTTAGACTGGATTATTTGTATTTTTTTACTGTTGTTTGAATTTCTTATATATTCTAG	.	.	.
TALL007	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	2	6	0	15	23	low	.	.	low_entropy(2)	CCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAG	.	.	.
TALL007	STIL	TAL1	-/-	-/-	1:47314036	1:47224098	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	15	30	low	.	.	.	CGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAG	.	.	.
TALL007	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	3	2	1	26	5	low	.	.	low_entropy(2)	GGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGC...GGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACC	.	.	.
TALL007	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	4	1	0	5	5	low	.	.	.	GAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACC	out-of-frame	ESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaal	.
TALL007	KCNK17	KIF6	-/.	-/.	6:39314224	6:39346193	CDS	intron	deletion/read-through	downstream	upstream	1	0	2	13	1	low	.	.	.	.	.	.	.
TALL007	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	0	0	40	10	low	.	.	duplicates(1),mismappers(1)	GTCATTGTCATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGG...AGAAGGAGCAGCCCACAGTCAAATCTGTCCAt___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTG...ACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGG	out-of-frame	EGAAHSQICPwYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL007	LINC01410(4964),RP11-262H14.5(19298)	RP11-764K9.1	./.	-/.	9:62818450	9:63809386	intergenic	intron	deletion	downstream	upstream	0	0	2	13	1	low	.	.	.	.	.	.	.
TALL007	MICAL2	CEMIP	+/.	+/.	11:12217961	15:80939158	intron	intron	translocation	upstream	downstream	0	0	2	2	5	low	.	.	.	.	.	.	.
TALL007	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	2	0	10	2	low	.	.	mismappers(1)	AAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GAAAACAAACAACCTGATTTTAAAATGGCCAAAGGACCTGAACAGACATTTCCCTAAAGAAGATGTGAAGATGGC	out-of-frame	ACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL007	AC004791.2	RBM6	-/-	+/+	19:15864816	3:50065031	splice-site	splice-site	translocation	upstream	upstream	0	1	0	960	377	low	.	.	.	CAAACTTCCCCCCAGGCTGGGGGAAACTG|TTTCAGGAAAATGCaAGTGAAGGGAAGGCCCCTGCAGAAGACGTCTTTAAGAAGCCCCTGCCTCCTACTGTGAAGAAGGAAGAGAGTCCCCC	.	.	.
TALL007	AC004791.2	RBM6	-/-	+/+	19:15864816	3:49975323	splice-site	splice-site	translocation	upstream	upstream	0	1	0	960	152	low	.	.	.	GCTAGCAGCAAGGACCCCAAAGAATTATCAGCATTGGGGCCCAAACTTCCCCCCAGGCTGGtGGAAACTG|ATTCTTAATGCTTTTCGGACTCCTGATGGC...GTAAAGAACTTGCAGTTGAAGGAGTATAACACAG___GTTACGACTATGGCTATGTCTGCGTGGAGTTTTCACTCTTGGAAGATGCCATCGGATGCATGGA	.	.	.
TALL008	RCBTB2	LPAR6	-/-	-/-	13:48496191	13:48389812	splice-site	splice-site	deletion/read-through	upstream	downstream	166	233	44	964	869	high	.	.	duplicates(52),low_entropy(42),mismappers(28),mismatches(6)	CATTTATGCACATAAAGTCCTTCTCAAGATTCG___ATGTGAGCATTTTCGTTCGTCATTGGAAGATAACGAGGATGATATTGTAGAAATGAGTGAATTTTCATATCCTGTTTACCGGGCCTTCCTGGAATACCTATACACAGACAGCATCAGCCTTTCTCCTGAGGAGGCAGTAG___...AAGGCGCACATGCTTTTTTCC...___...A...___...TAAAGCTATTTTCCCTGTGCTCCTGTTTTTCAACAGCTAATGATTTGTGTATCATGTTTGCTCAGCTTGGCTGCCATCCTGGGTAGAGCCCCACACTGAAGT___GACTGCTAGACTTGGCTACATTTTATAGAGAAAATCGTTTGAAAAAGCTCTGCCAACAAACTATCAAGCAAGGCATCTGCGAGGAGAATGCCATCGCTCTGCTCTCGGCTGCGGTGAAGTATGATGCACAG|GTGAAAACTCCAAAGCTTAACATTCTAACCACTCTAGGGAGGGAGGATGGGAGGAAGAGAGCTGAGTGTGCACCAAGGAGCGGTAAGATGCCAGACCTGTGAGTGAAGAAGCATCTTGGAAGTGGACCCTATAGCTCCAGGCACCTGCTGACACATAGTCGGAGACAAACCACCCAGTCAAGTTCAACCCAAATTCCTGACCCAAA...___GGCCCTCAGAAATAATACCACACATCTACAACCATCTGATCTTTGACAAACCTGACAAAAACAAGAAATGGAGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCCAGCCATATGTAGAAAG	out-of-frame	klfslcscfstandlcimfaqlgchpg*sptlk*LLDLATFYRENRLKKLCQQTIKQGICEENAIALLSAAVKYDAQ|vktpklnilttlgredgrkraecaprsgkmpdl*	.
TALL008	RCBTB2	LPAR6	-/-	-/-	13:48496191	13:48404263	splice-site	splice-site	deletion/read-through	upstream	downstream	51	100	70	964	198	high	.	.	duplicates(14),low_entropy(18),mismatches(4)	CGAGGATGATATTGTAGAAATGAGTGAATTTTCATATCCTGTTTACCGGGCCTTCCTGGAATACCTATACACAGACAGCATCAGCCTTTCTCCTGAGGAGGCAGTAG___...CAACAGCTAATGATTTGTGTATCATGTTTGCTCAGCTTGGCTGCCATCCTGGGTAGAGCCCCACACTGAAGT___GACTGCTAGACTTGGCTACATTTTATAGAGAAAATCGTTTGAAAAAGCTCTGCCAACAAACTATCAAGCAAGGCATCTGCGAGGAGAATGCCATCGCTCTGCTCTCGGCTGCGGTGAAGTATGATGCACAG|GTCTGTTACAGAAGTCTCGGTTTACTTCAATTTCTGTTCTGCTTCTCTCTTTGGCACCATCAGGAAACCCTAGCCCCGTGTCT___GTGAAAACTCCAAAGCTTAACATTCTAACCACTCTAGGGAGGGAGGATGGGAGGAAGAGAGCTGAGTGTGCACCAAGGAGCGGTAAGATGCCAGACCTGTG...___...GTGAAGAAGC...___ATTACCTCTGGAAGTCCATTAGATGTTACAAG...ATTAAAGTGCTGGTACCAATATCAAATGAGAGACTGACTGAGCGAGACTAACTCAAACGGTATCCTCATCTTTTGCCTCTCTGACTTGGAGGGAGAAAC	out-of-frame	tandlcimfaqlgchpg*sptlk*LLDLATFYRENRLKKLCQQTIKQGICEENAIALLSAAVKYDAQ|vcyrslgllqflfcfslwhhqetlapcl*	.
TALL008	RCBTB2	LPAR6	-/-	-/-	13:48496191	13:48401407	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	61	964	12	low	.	.	duplicates(1),low_entropy(1)	CACAGACAGCATCAGCCTTTCTCCTGAGGAGGCAGTAG___...GTTTTTCAACAGCTAATGATTTGTGTATCATGTTTGCTCAGCTTGGCTGCCATCCTGGGTAGAGCCCCACACTGAAGT___GACTGCTAGACTTGGCTACATTTTATAGAGAAAATCGTTTGAAAAAGCTCTGCCAACAAACTATCAAGCAAGGCATCTGCGAGGAGAATGCCATCGCTCTGCTCTCGGCTGCGGTGAAGTATGATGCACAG|AAATTCAGAAGCCACACTAATTAGGATCGATTTCTCCTATTTCTCTTCTTTGTTTCTTGCATATCCAGAATTCTAGAGCCCTTCCTCACAATTCCAGTTAAGATTTGACT___GGCCCTCAGAAATAATACCACACATCTACAACCA	out-of-frame	fstandlcimfaqlgchpg*sptlk*LLDLATFYRENRLKKLCQQTIKQGICEENAIALLSAAVKYDAQ|kfrshtn*	.
TALL008	NXF1	TMEM223	-/-	-/-	11:62805329	11:62774665	splice-site	splice-site	deletion/read-through	upstream	downstream	35	54	2	144	144	high	.	.	duplicates(8),low_entropy(13),mismatches(2)	GGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCG|GGTATAGCACAATAAGAAACCGACAAAAACAGCAGCTGATGACTCACTCCAACAACGCACAGCACCAGAAG___GCAAGGAAATCAAACCTCAGAGGCTAAATGTTCCATGACTTCTCCAAGATCATGAAGTAAGCACTGAGTAAGTAGGGAG...___...GAG...___CCAGTCGGCGGGCGCCTTGGAAAGTTTCCGGCCCTCCAGGAGGCTTCCTGGCTCTTGATTGGCCAGTGTGAACAGACTGTAGAGACCGGCGGTCACGTGACGCTGAAGATTCCCGC	out-of-frame	MADEGKSYS|gystirnrqkqqlmthsnnaqhqkarksnlrg*	.
TALL008	NXF1	TMEM223	-/-	-/-	11:62805329	11:62772132	splice-site	splice-site	deletion/read-through	upstream	downstream	3	3	0	144	162	low	.	.	.	CTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCG|GCAAGGAAATCAAACCTCAGAGGCTAAATGTTCCATGACTTCTCCAAGATCATGAAGTAAGCACTGAGTAAGTAGGGAGGGGG...___...CATTCAGGAGCCGCCAGCTGTATGGGGAACAAGGCCTG...___CCAG	out-of-frame	MADEGKSYS|gkeikpqrlnvp*	.
TALL008	RB1	RCBTB2	+/+	-/+	13:48381443	13:48496587	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	33	28	12	196	494	high	.	.	duplicates(6),low_entropy(6)	AGGATATAGGATACATCTTTAAAGAGAAATTTGCTAAAGCTGTGGGACAGGGTTGTGTCGAAATTGGATCACAG___CGATACAAACTTGGAGTTCGCTTGT...ATCCATTCAAAATTTTAG___CAAACTTCTGAATGACAACATTTTTCATATGTCTTTATTGGCGTGCGCTCTTGAGGTTGTAATGGCCACATATAGCA___GAAGTACATCTCAGAATCTTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCTGAATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCATGGCTCTCA|GAAAAAAGCATGTGCGCCTTGAATGACCCCTTCCCCTGCAATCTCAATGTCAGCTTCTCCTGGGCCACTCCCAGGAGCACACACACATGCTGTAAGAGTGCCCGCCGTGAAAAGAAAGAAAAGAAAAGAAGAAAAGAAAACAAAAGAGAAGAAAAGAAGAGAGGACAGGAGAGGGAGGGG	out-of-frame	SIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLS|eksmcalndpfpcnlnvsfswatprsthtccksarrekkekkrrkenkreekkrgqere	.
TALL008	SPPL3	COQ5	-/-	-/-	12:120903845	12:120522363	splice-site	splice-site	deletion/read-through	upstream	downstream	3	12	2	19	53	high	.	.	duplicates(1),low_entropy(1),mismatches(1)	CGCCGTGCAGCCAGCGAGCCAGCGAGCGAGCAAGCAAGCAAGCACCGaACCCCGGCCGCGCCTTCAGCTACGGCCCGAGCGAGCCCGCCGCCGCCGGGCCCGGCCACAGCCTGCAGCGGAGCCCACGAGAGGCAGCGCCATGGCGGAGCAGACCTACTCGTG|TCTATCAGGTGTTTGAAAGTGTGGCTAAGAAGTATGATGTGATGAATGATATGATGAGTCTTGGTATCCATCGTGTTTGGAAGGATTTGCTGCTCTGGAAGATGCACCCGCTTCCTGGGACCCAGCTGCTTGATGTTGCTGGAGGCACAG___TCCCAGCATCAGAGAAAACAGAAGAGGCAGTTAAGGGCCCAACAAAATTTATCCTGGGAAGAAATTaCCAAAGAGTACCAGAATGAAGAAGATTCCTTGGGCGGGTCTCGTG	out-of-frame	MAEQTYSc|lsgv*	.
TALL008	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	6	15	0	66	26	medium	.	.	duplicates(1),low_entropy(1),mismatches(1)	CCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCG	.	.	.
TALL008	SRP14-AS1	BUB1B	+/+	+/+	15:40039448	15:40165053	splice-site	splice-site	deletion/read-through	downstream	upstream	4	5	1	44	36	medium	.	.	.	CTGGGGCTGTCCTGGGTCGTCACATGCGAGAAATCGTCTCACCCCAGCCAGTGTGACGGAGTGAGAGCAAAAGAAAGTTTTGATAGCAGCGTACGATTTATATTCAGCTGTATGCTGGGCAG|TGAAGCCATGTCCCTGGAGGGAGATGAATGGGAACTGAGTAAAGAAAATGTACAACCTTTAAGGCAAGGGCGGATCATGTCCACGCTTCAGGGAGCACTGGCACAAGAATCTGCCTGTAACAATACTCTTCAGCAGCAGAAACG___GGCATTTGAATATGAAATTCGATTTTACACTGGAAATGACCCTCTGGATGTTTGG	.	.	.
TALL008	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	2	3	1	76	65	medium	.	.	.	CTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCGAGGATTTAGCTAGCTGGTGACGCCGGAGCACGAAGTTGTACAGGTAGCCAGCAGCAC	out-of-frame	VIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
TALL008	DLEU7	DLEU2	-/-	-/-	13:50839943	13:49993961	intron	splice-site	deletion	upstream	downstream	1	3	0	539	22	medium	.	.	.	GAGAGAGCATAGCACAGCAGTCAAGTCCCATGGAGCATTTCAAACCTACTCTTCCACTTCCTGTCATTGGCCCTTGG|AACAGCGACTGGGAAACTGCCACTAGAAAAAGATGACTGTCCAACTAAAACCTGCATACACAGCTACATCCTTCCCTGGAAGAGCACAGTGGAACTAGATCCTAGTACAGATAGCACAGGGATTGTCAACATTCTTGTCACACTGAAATTTCCTTCTACTGATCTCCAA___AGATGGTGTTTTGCCATGTTGCC	.	.	.
TALL008	DLEU7-AS1	DLEU2	+/-	-/-	13:50839943	13:49993961	intron	splice-site	deletion/3'-3'	upstream	downstream	1	3	0	539	22	medium	.	.	mismappers(1)	CAGGCATTAGAGATCCTGCAGTGGAGAGAGCATAGCACAGCAGTCAAGTCCCATGGAGCATTTCAAACCTACTCTTCCACTTCCTGTCATTGGCCCTTGG|AACAGCGACTGGGAAACTGCCACTAGAAAAAGATGACTGTCCAACTAAAACCTGCATACACAGCTACATCCTTCCCTGGAAGAGCACAGTGGAACTAGATCCTAGTACAGATAGCACAGGGATTGTCAACATTCTTGTCACACTGAAATTTCCTTCTACTGATCTCCAA___AGATGGTGTTTTGCCATGTTGCC	.	.	.
TALL008	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	1	3	0	76	11	medium	.	.	duplicates(2)	TTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTGCAGCTACTGAAAGTTTAAAGTTTAAGTAAAAAAATGAATAGCTTTCTTCAG___CCTCAAGGAATAGGTTCTCCTAG	out-of-frame	QALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|wlyassssscs*	.
TALL008	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	74	35	low	.	.	duplicates(1)	TGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATG...GTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGT	in-frame	GVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYH	.
TALL008	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	131	35	low	.	.	.	AGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGC	out-of-frame	KILKETKQSVWIRNIQL|asrnrfs*	.
TALL008	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	76	35	low	.	.	.	CATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAG	out-of-frame	LISYFWLQDFVPTs|lke*	.
TALL008	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	1	3	0	234	46	medium	.	.	mismappers(2)	TTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACC...ATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAAC...GCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAG	.	.	.
TALL008	AL136123.1(23840),DLEU2(6098)	DLEU7-AS1	./.	+/.	13:49976454	13:50839943	intergenic	intron	deletion	downstream	upstream	1	2	0	21	539	medium	.	.	low_entropy(1)	.	.	.	.
TALL008	ZNF543	ZNF543(4567),CTC-444N24.13(15505)	+/.	./.	19:57329784	19:57335343	3'UTR	intergenic	duplication	upstream	downstream	0	1	1	13	5	medium	.	.	.	.	.	.	.
TALL008	LINC01226	LINC01225	+/.	+/.	1:31523625	1:31524544	exon	intron	duplication	upstream	downstream	1	4	9	141	89	low	.	.	duplicates(1)	.	.	.	.
TALL008	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	1	10	7	low	.	.	low_entropy(1),mismatches(1)	TTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAG	.	.	.
TALL008	LZTFL1	SLC6A20	-/-	-/-	3:45826255	3:45782757	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	4	766	0	low	.	.	mismappers(1)	GGAGGAGAATCTGGCGACAGCCAAGCACGATCTACTCAGGGTTCAGGAGCAGCTGCACATGGCTtAAAAG___...AAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGG...|...CAG___GTAGTTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGG	.	.	.
TALL008	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	118	119	low	.	.	low_entropy(1)	TCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___C...TTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL008	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	12	119	low	.	.	read_through(4)	GGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAG	out-of-frame	ARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL008	FBXL4	RP11-67P15.1(22230),POU3F2(18370)	-/-	./-	6:98880553	6:98816222	splice-site	intergenic	deletion/read-through	upstream	downstream	2	0	0	73	5	low	.	.	mismappers(1)	AATGAAACTTGCTTAGAAGTTATTTCTGAGATGTGTCCAAATCTACAGGCCTTAAATCTCTCCTCCTGTGATAAGCTACCACCTCAAGCTTTCAACCAC...GTTATGCAGCCTTAAACGACTTGTTCTCTATCGAACAAAAGTAGAG___CAAACAGCACTGCTCAGCATTTTGAACTTCTGTTCAGAGCTTCAGCACCTCAGTTTAGGCAGTTGTGTCATG|TTGCTGTGAGTAGTACCACCAGTACAATGTTGAACAGAAGTGGTGAGA___GTAACAGAGAGGCCCAAGAAGAGGGAGAAAGATG	out-of-frame	LCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVM|ll*	.
TALL008	ZNF549	ZNF549	+/+	+/+	19:57540456	19:57533098	3'UTR	intron	duplication	downstream	upstream	2	0	0	42	1	low	.	.	.	TTTCCAAAAGGAGAGGTAGATGCATATTTTTGTGTGGAACCATTTATCTTAAAACATTGAGGTGCAGTTTTCATACACAAAACCTTCTATCTTTTTAAGAACTGTCTGTATGGTTTATTGCCCAGTTAATGGGTTTTGATAGTCATGTTATCTCAGTAAGTGTCTTG|GCCTCCCAAAGTGCCTGTGATGTTTTCTTGATAGCTACACATGATGAGCTCAGTAAAAGGAATTGCTGTAAATAGGCC	.	.	.
TALL008	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	3	4	low	.	.	.	CTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTT...GCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATAC	out-of-frame	LRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglr	.
TALL008	MEF2A	LRRC28	+/+	+/+	15:99645764	15:99386030	splice-site	splice-site	duplication	downstream	upstream	1	0	0	42	273	low	.	.	.	CTTTTACAAAGAGAAAGTTTGGATTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTGTGAAATAGCACTCATCATTTTCAACAGCTCTAACA...GAACCTCATGAAAGCAGAACCAACTCGGATATTGTTGAG|GAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGAC	out-of-frame	EPHESRTNSDIVE|ednc*	.
TALL008	MEF2A	LRRC28	+/+	+/+	15:99598511	15:99386030	splice-site	splice-site	duplication	downstream	upstream	0	1	0	22	273	low	.	.	.	TGCAAGGATCATATCTAAGTGCACTTTTTGCTGATACTTCATTTCTA|GAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTC	.	.	.
TALL008	EXOC4	CHCHD3	+/+	-/-	7:133630141	7:132885745	splice-site	splice-site	inversion	downstream	downstream	0	1	0	213	207	low	.	.	.	CAGAAACATTACCGTCATATTCCACCCATTACTAAG|GCTAGGCAGCTGGAAGAGAAAGACCGAGTGCTAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGG___AGCTCAGAGTTCTAC	out-of-frame	RNITVIFHPLLr|lgswkrktec*	.
TALL008	EXOC4	CHCHD3	+/+	-/-	7:133480138	7:133024627	splice-site	splice-site	inversion	downstream	downstream	0	1	0	824	174	low	.	.	.	GAAGGGAGCTCTATAGTCGGAGTGGAGAACTGCAAG|TTTCTGATGAAGAATTGAAAAGAAGAGTAGCTGAGGAGCTGGCATTGGAGCAAGCCAAGAAAGAATCCGAAGATCAGAAACG___ACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTG	in-frame	RELYSRSGELQ|vSDEELKRRVAEELALEQAKKESEDQKRLKQAKELDRERA	.
TALL009	ZMIZ1	NUTM2B	+/+	+/+	10:79162133	10:79709800	splice-site	splice-site	deletion	downstream	upstream	28	22	5	75	97	high	.	.	duplicates(2),low_entropy(4),mismappers(1),mismatches(1)	GGGCTGCCACCTCCTCCTCCAGACGCTCTCAGCAGACTTGAGTCCTGGTCCTTCTGCAGAGGCCTGAGCAG___GAGGAAGAGGAGGAGGCCCGTTGGCGTCGGACCAATGCTGCAAGGGGTGTGAGGAGAGGAGCCGCTGTTTTTCACTGAGCTGCCATACCCCGAAAG___CAGGATGGAGCTGGAGTGAGGTGGAGGGGCCGCAAGCTGCTGACCGGCGTGTGGAACACTGGTGGTTTGCAGATCACTGAG|GTTCCTGGAGTTTGAGGCTGAGGAGGAGATGCAGATTCAGAAATCGCAATGGATGAAGGGGCCCCAGTGCCTGCCTCCTCCAGCCACACCGAGGCTTGAACCTCGAGGACCCCCGGCCCCTGAGGTGGTCAAGCAGCCAG___TGTACCTTCCCAGCAAGGCCGGCCCCAAGGCCCCGACTGCCTGCCTGCCACCACCCAGGCCCCAGAGGCCAGTGACCAAGGCCCGCCGGCCACCACCCCGGC	.	.	.
TALL009	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	17	32	4	114	125	high	.	.	duplicates(3),low_entropy(15),mismappers(1),mismatches(2)	AAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCAC	out-of-frame	AIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL009	USP9X	DDX3X	+/+	+/+	X:41201280	X:41337408	splice-site	splice-site	deletion/read-through	downstream	upstream	7	32	13	84	104	high	.	.	duplicates(1),low_entropy(14),mismappers(4),mismatches(1)	GGCTATTCCGGTCTGTGGTTCACCACCTACAATTAATGCTGGTTTTGAATTACTTGTAGCATTAGCTGTTGGCTGTGTGAGGAATCTCAAACAAATAGT...CTGAAATGTATTACATTGGCACAGCAATAACTA___CTTGTGAAGCACTTACTGAGTGGGAATATCTGCCACCTGTTGGACCCCGCCCACCCAAAGGATTCGTGGGGCTGAAAAATGCCGGTGCTACTTGTTACATGAATTCTGTGATTCAGCAACTCTACATGATTCCTTCCATTAGGAACGGTATTCTTGCCATTGAAGGCACAGGTAGTGATGTAGATGATGATATGTCTGGGGATGAGAAGCAGGACAATGAG|TTTGCTGGCCTAGACCTGAACTCTTCAGATAATCAGAGTGGAGGAAGTACAGCCAGCA___AAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAGAAGCTACTAAAG___GTTTCTACGATAAAGACAGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCGTATAGCAGTTTTGGATCTCGTAGTGATTCAAGAGGGAAGTCTAGCTTCTTCAGTGATCGTGGAAGTGGATCAAGGGGAAG___GTTTGATGATCGTGGACGGAGTGA	in-frame	EMYYIGTAITTCEALTEWEYLPPVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNGILAIEGTGSDVDDDMSGDEKQDNE|FAGLDLNSSDNQSGGSTASKGRYIPPHLRNREATKGFYDKDSSGWSSSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRGRFDDRGRS	.
TALL009	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	20	15	3	68	48	high	.	.	duplicates(2),low_entropy(5),mismatches(2)	CCCCTCCTTTTTTTTATTTGCATCTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGT...CTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCC	.	.	.
TALL009	MTAP	LINC01239(251783),SUMO2P2(556110)	+/+	./+	9:21866842	9:23075996	3'UTR	intergenic	deletion	downstream	upstream	4	15	18	34	61	medium	.	.	duplicates(2)	CACGAGGAAGCA___...GACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG___AAAAAATCTGCTGGAATGGCACTGAATTTTTAGGTCGATTTGGGAAGAATTGACAATATTGAACCTTTCAATCGATGGACATG|ATCCTGGCTTCAATAGGAAGACCTTTGATTCTTTATCAAGTACTCAGTTGTATCTTCTTAAGAAACATTCTCTTCACTTTTAAGATCTTTCTATTCCTGATTCGAGGTAAATTTGTTTTCTTTGTTTCTCTTTGTTTTTTAATCTGGATACTTGTTCACACTCCATAGAGATTATCA...TATGAAATATAGATATATGAGTTATATTATTATACTTTTTAATAAAAACCATTTTTCATAATTTTAATAAAGTTTAATGTAGTTTCTTTGGTCACAAC...GGtTATAAATTGACCTTAATTTACTGCTGATGTTCTTTATCTTTACATTCAGATATGTTTACAAAATAAAATAATGAGATCGGTCACTTTTTAATTTGTA	.	.	.
TALL009	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	12	3	58	27	medium	.	.	low_entropy(2),mismappers(1),mismatches(1)	CCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCAC...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGG	.	.	.
TALL009	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	6	6	0	20	20	medium	.	.	low_entropy(2),mismappers(1),mismatches(1)	AGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTA?TCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAGT	.	.	.
TALL009	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	5	4	0	499	48	medium	.	.	mismappers(1)	CGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGcATCG...CACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAAC...GGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGG	.	.	.
TALL009	PGPEP1L	AC055714.1(56828),FNDC3B(4282)	-/-	./-	15:99007622	3:172035346	5'UTR	intergenic	translocation	upstream	downstream	2	1	1	54	3	medium	.	.	.	GTCGCCTTCaGTGCTGTGGAAGTTTTGTTGTTTTGCTTGTTTGCAATAACCGTTGCTGCTGCTTACTGTTTGGGTCCaCACTGCCTTTATGAGCTGTAACaCTCACCGTGAAGGTCTGCAGCTTCaTTCTTAAAGCCAGCCACATCACGGACCCACC|GGTCTTCTGAAACTGCCTCCTTACAACTTTCTCCCACTGGTTTTATTTCTGCCCTCTGGAGGCAGACAAAATAACAACACTCACCTTCCACATGACCTCCCTTCCAATGAACTGAACATGCCTGGCATTTGCTCCCTAGAGATTCTCTTTTCCTGAATAAACGTC	.	.	.
TALL009	CTD-2583A14.11	ZNF587	+/+	+/+	19:57868607	19:57225377	exon	intron	duplication	downstream	upstream	0	1	2	21	1	medium	.	.	.	CTGCTCTCTATCCAGTGCCTGCTAGGACAACTCAACATTGATAGCCCTTTGAACACACATGCTACCAAGCTCTGGGAAAACCCCATAGCTTTAAGAAGTACCTGCAAGGGTCAGGCGCAGTGGCTCACACCTGTAATCCCA...CCAAGGCCTGACAAACATGGAGAAATGTCATCCCTATTTAAAAAAATAAAAAAATTAGCCA|AGTGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGG...CGCCATTCTCTTGCCTCAGCCTCCTGAGTAGCTGGGACCACAAGCGCCCACCACGTCAGCTTAATTTTTTTGTTTTGTTTCTTGAGACAGAGTCTTGCTC	.	.	.
TALL009	PPOX	PPOX	+/.	+/.	1:161168945	1:161170047	intron	intron	duplication	upstream	downstream	1	1	1	17	22	medium	.	.	.	.	.	.	.
TALL009	LINC01226	LINC01225	+/.	+/.	1:31523622	1:31524541	exon	intron	duplication	upstream	downstream	5	3	12	174	55	low	.	.	duplicates(3)	.	.	.	.
TALL009	LZTFL1	SLC6A20	-/-	-/-	3:45826255	3:45782229	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	9	1361	16	low	.	.	duplicates(2),mismappers(4)	GACAAGACAGAAAACCAGAAGTCACTGGAGGAGAATCTGGCGACAGCCAAGCACGATCTACTCAGGGTTCAGGAGCAGCTGCACATGGCTGAAAAG___...CTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGG...|...CCtCAGGTAGTTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCGGTACGTGGGGCCCCTCCAGTCCTCTCCCACCCAGAGACCCGGGCAGCATGGGGGTGTGGGTGGGATCCCATCAGCAAAGCTGCTGGATCAAGGGGCGAGCACAAGGCCCAAGAGAGgGCTCTTGCCTGGGGTGAACAAATGGCCTGGTG	.	.	.
TALL009	CPA4	CPA5	+/+	+/+	7:130312122	7:130346393	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	2	168	34	low	.	.	low_entropy(4)	CCCATCTCTTCCAATCTGA___...GGAAGGT?AAGCTTCAGGATCGATTTTTTCTCACTCCACGGATTCCCCCTTCCCAGGACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GCTGGGCTTTCCAGCCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCAC	out-of-frame	kvklqdrffltprippsqDKVARLAAKALASVSGTEYQVGPTCTTV|cwafqplgavls*	.
TALL009	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	2	168	38	low	.	.	.	GGAAGGTCAAGCTTCAGGATCGATTTTTTCTCACTCCACGGATTCCCCCTTCCCAGGACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGG___GG	out-of-frame	kvklqdrffltprippsqDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalswqqlwak*	.
TALL009	CPA4	CPA5	+/+	+/+	7:130312122	7:130349975	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	168	35	low	.	.	.	TTCCCAGGACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGGACTTCTGGCGTGGCCCAGCCAGGCCCAGCCTCCCTGTGGATATGAGAGTTCCTTTCTCcGAACTGAAAGACATCAAAGCTTATCTGGAG	out-of-frame	sqDKVARLAAKALASVSGTEYQVGPTCTTV|cgllawpsqaqppcgyessflrterhqslsg	.
TALL009	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	168	34	low	.	.	low_entropy(2)	AACAAGGGACCAGAAAGGAAATCGGGGGGGGCTGAGAATCTTCCAAACCATCCCAGAGCAGAGCAGCTGAGGAAGGTCAAGCTTCAGGATCGATTTTTTC...CCCTTCCCAGGACAAGGTGGCGAGGtTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCACACCCTGGAGGAG___ATATATAGCTGGATTGACAACTTTGTAATGGAGCATTCCGATATTGTCTCAAAAATTCAGATTGG	out-of-frame	psqDKVARfAAKALASVSGTEYQVGPTCTTV|caag*	.
TALL009	ARHGEF3	CNTNAP2	-/-	+/-	3:56731599	7:147842580	3'UTR	intron	translocation/5'-5'	upstream	downstream	0	0	5	14	4	low	.	.	mismappers(1)	AAACAAATTAACTAAAAGAAGCCAAGATAGCAATATCTATCGAGTATCTAACATGATACTCGGTGAAACAAGCAGGTAACTTCCTTCCCCTATGGAGCTTGCATTGTGATGGAGGAGAAAGATGATAAACAAATGAATACTCtAGGTGTTGTTAAGAAAACTTAA...|...AAAAAaaAAAAAAAAAAAAAAAAaAAAaGCAACTGAAATATTTAAATCTAAATATAAAAGCTATTTTTAAATGGCTGAAATTATTCTCTTCCCCCTTGTTCTCAGAG...AAACTTAAAATACATGGAATTAAAAATTATATTATTAACATAGAATATGTGGAAATAAATATAACACTGTGATTCACAGAACTGGCTGTACTATCTTATGAATCTGC	.	.	.
TALL009	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	0	126	235	low	.	.	.	CAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL009	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	29	235	low	.	.	duplicates(1),read_through(9)	CTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGC...GAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCCATGCCAG	out-of-frame	LTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL009	GS1-24F4.3(1485),DEFA4(3864)	DEFA1	./.	-/.	8:6931958	8:6978329	intergenic	intron	deletion/read-through	downstream	upstream	1	2	2	123	52	low	.	.	.	.	.	.	.
TALL009	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	4	0	0	5	8	low	.	.	mismappers(2)	G___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAG	.	.	.
TALL009	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	61	106	low	.	.	.	TTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAG	out-of-frame	LKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL009	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	70	106	low	.	.	.	GTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCaTGGG	in-frame	WIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAW	.
TALL009	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	3	0	24	19	low	.	.	low_entropy(4)	AGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGG...CGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAG...AAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGC	.	.	.
TALL009	SAAL1	TPH1(14395),SAAL1(13114)	-/-	./-	11:18079658	11:18056821	exon	intergenic	deletion/read-through	upstream	downstream	0	0	4	8	2	low	.	.	.	ATTTTATTAAAATCCTACGTGAAGTTGATAAGGCGCTTGCTGATGACTTGGAAAAAAACTTCCCAAGTTTGAAG___GAACCTTATGCAAAAATCCAGATGT...|...TGcCAGCCATGGAATAAGATGGCCGAGCCACAAGATGGAAATTACCTGAATCTCTGAGTAACCACACAGAGAACCACATGGAGAGGAGCTGCCCTGGAGAGTCCCCCAAT___GGTCTTGCTCTGTCACCCAGGCTGAAGAGCAATGGC	.	.	.
TALL009	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	127	173	low	.	.	low_entropy(1)	CAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGC...GACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGG	.	.	.
TALL009	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	1	0	63	23	low	.	.	mismappers(7)	GCAAGGCAGTTCTTCAGGGGAG___GGGTCATTGTCATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTC...AGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAAgCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTgCAACAACCTAGTGTCAtTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGG...AAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACG	out-of-frame	GTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL009	C5orf56	RAD50	+/+	+/+	5:132449689	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	182	45	low	.	.	low_entropy(1)	GCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAGATTCGTCTGCAATTTCGTGATGTCAATGGAGAACTTATAGC...AAAGATCTATGGTGTGTACTCAGAAAAGCAAAAAGACAGAATTTAAAACTCTGGAAGGAGTCATTACTAGAACAAA___GCATGGTGAAAAGGTCAGTCTGAGCTCTAAG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|dhh*	.
TALL009	RP11-362M19.1(466468),UGT8(27762)	UGT8	./+	+/+	4:114570693	4:114619423	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	2	8	low	.	.	mismappers(1)	GGAAGTTATAAGAGGTAAGATCAAATATTAGAATGAAAAGGTATCATTCATGTCTACAAGGAACTCACATTCTTAAAGGAATTTGAGATGTACTTAAATC...GACCAAAGAGCTATGGGTGCATGATGGAAGTCGGGGAGATCATTTCAGGAATGCCTCACCACGGAGCTGACATTTCAAAGATG|TGAGAGTAACACATGCGCACTGTGGATTCCTTTGTGAATACATAAAAGGAAAAGTTAAAACTCTTATAATTtACACTATCCAGAGAAAAACAATACTATTTTG___CTATGAAGTCTTACACTCCATATTTCATTCTCCTGTGGAGTGCTGTTGGGAT	.	.	.
TALL009	SNX29	CTD-3037G24.5(4325),CPPED1(40622)	+/+	./+	16:12572071	16:12619177	3'UTR	intergenic	deletion/read-through	downstream	upstream	1	0	1	15	4	low	.	.	mismappers(3),read_through(1)	GCCATCTTCACATCCAGTCACCAGTTGCATCTAGGGAGCTGCTGGCTATAAAAGGGATCATCCAGTGGAGTTGTAAACgAGGGAACCATCTTGCAAGAT|CAGTAAGATCTCAGGAGCTGGGCAAGTGGGCTCAAACATGCAGAGAGGCAAAATAGCAGAGTTTTAAACACTCGACTGGTAAGAGAAGAACACCTCAAGTGGGCTTGTGCACAGC	.	.	.
TALL009	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121455	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	3	6	low	.	.	mismappers(1)	CAGAAAATTCTTGCTGCTGTATTGAGAACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|CTGGGCAGATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCTGTCTGGAACCGCTTCC	.	.	.
TALL010	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	51	7	2	134	206	high	.	.	duplicates(4),low_entropy(4),mismappers(37),mismatches(2)	CAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG___...AGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAG	.	.	.
TALL010	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	10	12	9	253	206	high	.	.	low_entropy(1),mismappers(9)	CAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAG	.	.	.
TALL010	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	6	12	12	88	206	high	.	.	mismappers(12),mismatches(2)	TGTaTTatCTggAGGCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAG	.	.	.
TALL010	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	4	0	4	186	206	low	.	.	low_entropy(1),mismappers(4)	AAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAA	.	.	.
TALL010	AC013463.2	SCN2A	+/+	+/+	2:165091299	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	0	230	206	low	.	.	.	GGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGA	.	.	.
TALL010	HDAC4	GHR	-/-	+/+	2:239309087	5:42565864	splice-site	splice-site	translocation	upstream	upstream	5	6	9	191	66	high	.	.	duplicates(1)	GGCGTTCTTTGTGACTCTCGAGCCGAAACACTGTGGTGATCTCTCGTATCATCTGCTTGTTATGTAATGTGACAACATGGATATGAAATAGAAACCAGATGTCAGGGTGGAGCGGCTGAATTCTTCCCCAGCGAGGCCGCCGGGAGAGCAGGACTTGGGTTTCTCCTGAGTTACGGCGCCGAACGCCCTGAGAAAAACGCCTTTGGAGCAGTTTCCGGGATTAAGCGAAAGTCTGGGCTGAAG|GTCCTACAGGTATGGATCTCTGGCAGCTGCTGTTGACCTTGGCACTGGCAGGATCAAGTGATGCTTTTTCTGGAAGTGAGG___CCACAGCAGCTATCCTTAGCAGAGCACCCTGGAGTCTGCAAAGTGTTAATCCAGGCCTAAAGACAA___ATTCTTCTAAGGAGCCTAAATTCACCAAGTG	.	.	.
TALL010	HDAC4	GHR	-/-	+/+	2:239309087	5:42514080	splice-site	splice-site	translocation	upstream	upstream	0	1	9	191	2	high	.	.	duplicates(1)	CTCTCGTATCATCTGCTTGTTATGTAATGTGACAACATGGATATGAAATAGAAACCAGATGTCAGGGTGGAGCGGCTGAATTCTTCCCCAGCGAGGCCGCCGGGAGAGCAGGACTTGGGTTTCTCCTGAGTTACGGCGCCGAACGCCCTGAGAAAAACGCCTTTGGAGCAGTTTCCGGGATTAAGCGAAAGTCTGGGCTGAAG|TTAAAATGAGCAACTTCTTTAACCAGAACTGACCTTGAAGACAAATGGCTAAAATAAAACATTTGCTGAATTCACTGGGCGCATCTTACAAGTAATTTTTGGATTCTGCATTGACTAC	.	.	.
TALL010	HDAC4	GHR	-/-	+/+	2:239352678	5:42565864	splice-site	splice-site	translocation	upstream	upstream	1	2	4	43	66	high	.	.	.	CTTGTGGGTTACCTGGCTCATGAGACCTTGCCGGCGAGGCTCGGCGCTTGAACGTCTGTGACCCAGCCCTCACCGTCCCGGTACTTGTATGTGTTGGTGGGAGTTTGGAGCTCGTTGGAGCTATCGTTTCCGTGGAAATTTTGAGCCATTTCGAATCACTTAAAGGAGTGGACATTGCTAGCAATGAGCTCCCAAAGCCATCCAG|GTCCTACAGGTATGGATCTCTGGCAGCTGCTGTTGACCTTGGCACTGGCAGGATCAAGTGATGCTTTTTCTGGAAGTGAGG___CCACAGCAGCTATCCTTAGCAGAGCACCCTGGAGTCTGCAAAGTGTTAATCCAGG	in-frame	MSSQSHP|gPTGMDLWQLLLTLALAGSSDAFSGSEATAAILSRAPWSLQSVNP	.
TALL010	HDAC4	GHR	-/-	+/+	2:239309087	5:42629038	splice-site	splice-site	translocation	upstream	upstream	0	1	3	191	86	high	.	.	.	CTCTCGTATCATCTGCTTGTTATGTAATGTGACAACATGGATATGAAATAGAAACCAGATGTCAGGGTGGAGCGGCTGAATTCTTCCCCAGCGAGGCCGC...AAAAACGCCTTTGGAGCAGTTTCCGGGATTAAGCGAAAGTCTGGGCTGAAG|CCACAGCAGCTATCCTTAGCAGAGCACCCTGGAGTCTGCAAAGTGTTAATCCAGGCCTAAAGACAA___ATTCTTCTAAGGAGCCTAAATTCACCAAGTGCCGTTCACCTGAGCGAGAGACTTTTTCATGC	.	.	.
TALL010	STIL	TAL1	-/-	-/-	1:47313847	1:47229351	intron	splice-site	deletion/read-through	upstream	downstream	3	8	4	29	39	high	.	.	mismappers(1),mismatches(1)	CCCCAACGTCCCAGAGGCGtGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCGG...___...GTGGAGCTTTGTGCTCCTGGTTTCCCCTTGAGAGGCGGCAGCGGGGCCCTGGGAAGGTTGGTGGGTAACATTCAAAGCCCTGTAGTGGGTTCCGCCCTCCAGGAGCCTGGAGCAGATGACGAGAAGGGGAGCTAGTGGGAGAAATTAAGCAGTCCATGAAATCCTTGGGTATCATCTGAGCTAAG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAG	.	.	.
TALL010	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	6	5	2	36	39	high	.	.	low_entropy(1),mismappers(1),mismatches(2)	GTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GA...CAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGG	.	.	.
TALL010	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	9	3	24	32	high	.	.	low_entropy(2),mismatches(1)	CACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...CGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCG	.	.	.
TALL010	NBR2	NBR2	+/.	+/.	17:43139640	17:43141533	intron	intron	duplication	upstream	downstream	2	1	0	31	5	high	.	.	.	.	.	.	.
TALL010	GFRA4	ATRN	-/-	+/-	20:3663354	20:3649255	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	3	6	9	361	98	medium	.	.	low_entropy(19),mismatches(1)	CTGTGCTCCTGCTCCAGAGGCACTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|GCTCTCTTGTGACGCGCAACACTGCCAGATGACAACCAATTCCTTCTTGGAAACAGGCTgCGAGCCCAGCGCCTCTTACTCCCTGCCATTCCCTTTTTCTGCCCTGAGGCCGGAGAAAGCTGTTTGCTGTCGGTTGCAAAGGAGAAGCAGGTGGATTCAGCG	out-of-frame	MVRCLGPALLLLLLL|gslvtrntar*	.
TALL010	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	5	9	1	41	23	medium	.	.	low_entropy(5),mismatches(1)	CCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___C...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGC	.	.	.
TALL010	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	8	3	0	15	13	medium	.	.	.	GTAGAACTGAATGTTATGATGCATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACTAATGTTGG___TCAGATACTCAATATGGCTGATATGTATG...CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGAC	out-of-frame	PVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaal	.
TALL010	CYP2R1	CYP2R1	-/.	-/.	11:14890106	11:14890597	intron	intron	duplication	upstream	downstream	0	2	4	13	17	medium	.	.	.	.	.	.	.
TALL010	ACOT11	AC000068.5	+/.	+/.	1:54564371	22:19448420	intron	intron	translocation	downstream	upstream	1	0	1	4	1	medium	.	.	.	.	.	.	.
TALL010	ZFP82	ZFP82	-/.	-/.	19:36386947	19:36390796	intron	exon	duplication	upstream	downstream	1	1	0	13	8	medium	.	.	.	.	.	.	.
TALL010	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	2	203	19	low	.	.	low_entropy(1)	CTCATGTGTGCATGACGTCTCCCTTCTCAGGATAG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCAC	out-of-frame	hvcmtspfsg*DKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalswqqlwak*	.
TALL010	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	0	6	1	891	314	low	.	.	low_entropy(2)	GTTGTCACAGTGAGGCTCTTTGGGCTGTGCGGCACCTCATGACCATATTGGCTACACCCATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTC...CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTTGACCCTGTGAGACCCTAAG	out-of-frame	EESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssiclhfdpvrp*	.
TALL010	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	1	4	1	17	11	low	.	.	low_entropy(5),mismappers(1)	CAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGG...GGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTC	out-of-frame	QLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqka	.
TALL010	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	3	1	15	7	low	.	.	low_entropy(2)	CTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCA	.	.	.
TALL010	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	4	1	0	149	18	low	.	.	mismappers(1)	GCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTAC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsc	.
TALL010	PSME4	PSME4	-/-	-/-	2:53866085	2:53875755	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	2	1	1	155	136	low	.	.	.	CCCAGCTCCTCATGAATCTCAGTGCACATCTAAATGATCCTCAGCCTATTGAG___ATGACTGTAAAAAAAACCTTATCCAATTTCCGAAGGACTCACCATGACAACTGGCAGGAACATAAACAGCAATTCACTGATGACCAACTGCTTGTTCTCACCGATCTTCTTGTGTCACCATGCTATTATGCATAGAAAG|ATTGCCCCAGTGGAAAATGACAATAGCTACGATGAACTGAAAAGAGATGCAAAGTTATGTTTATCATTAATGTCTCAGGGGTTGCTTTACCCTCATCAAGTGCCTTTGGTACTTCAGGTGCTAAAACAA___ACAGCAAGAAGCAGTTCTTGGCATGCACGATACACAGTACTGACCTACCTCCAG	out-of-frame	QLLMNLSAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA*k|dcpsgk*	.
TALL010	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	3	0	42	4	low	.	.	.	CTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GGTTTTTATGGAGGACACAAACAAAT	out-of-frame	YPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL010	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	1	108	138	low	.	.	low_entropy(1),mismatches(1)	CTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAAC	out-of-frame	LVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL010	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	116	138	low	.	.	low_entropy(1),mismatches(1)	TGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGC	in-frame	GVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIG	.
TALL010	SLC35A3	HIAT1	+/+	+/+	1:99999415	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	119	138	low	.	.	duplicates(1)	TTTTATTGGTCTACAAAGACAGCA___AATGTAGTCTAAGAGCACTGAATCGAGTACTACATGATGAAATTCTTAATAAACCTATGGAAACACTTAAACTTGC...CAGAATAATTTACTGTATGTGGCACTATCAAATCTAGATGCAGCTACTTATCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCA	in-frame	QNNLLYVALSNLDAATYQ|PQGIGSPSVYHAVIV	.
TALL010	SLC17A9	SLC17A9(14088),BHLHE23(22254)	+/+	./+	20:62965166	20:62983673	splice-site	intergenic	deletion/read-through	downstream	upstream	0	0	3	83	7	low	.	.	low_entropy(1),mismappers(2)	GTGCACACGTTTTTGCCTGCAGCACGGGATAGCTGTCTTGAGCCCCAAGCCTCTTCCTCCCCTGCTGCCCCTCTGCAGCCATTCGGGATGGGACCCCCTCTGGGGTGTCAGCACGAAAGGGCTAACGGGAGCCCCTTCCTTGGCCTCCCCCTGTAGGTTACAGAGCCATCACGGTGCGGAAGCTCATGCAG|GCCCAGGCTGGAGTGCAGTGGTGCAATCACAGCTCACCGCAGCCTTGACCTCCCAGGTTCAAGCAATCCTCCCGCCTCAGCCTCCCGAGCAGCTGAATTACAGGCCCGCACCACCACGCCCGGCAAAT	out-of-frame	ahvfacstg*ls*apslflpccpsaairdgtpsgvsarkg*replpwpppvGYRAITVRKLMQ|aqagvqwcnhsspqp*	.
TALL010	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	107	306	low	.	.	low_entropy(1),mismatches(2)	CCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL010	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	33	306	low	.	.	read_through(11)	CAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTG	out-of-frame	QEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL010	KCNJ12	PDLIM1P2(3684),RP11-728E14.3(7390)	+/+	./+	17:21419513	17:21449123	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	3	0	9	3	low	.	.	.	TATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|GAAGCTTCCTGACACAGCCTGCACCCCAGTGGACTTCCCAAAGCAAGTTGAGTCTGACTTCGCACCCCTGACATCAGAATCATCTGACTTCTGGGCACGCCACTGAATACTGATGTACCTGAAGGAACCCTGG___GGTGTATGAAGAAAGGGCTTCAGCAGAAACAGAGGCTGAAGCCTGCGTGCTGGG	.	.	.
TALL010	AP000783.1	GRAMD1B	+/+	+/+	11:123480893	11:123577367	intron	splice-site	deletion/read-through	downstream	upstream	3	0	0	8	8	low	.	.	.	ATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG...GAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAAC	.	.	.
TALL010	GNG10	UGCG	+/+	+/+	9:111666953	9:111914608	intron	CDS	deletion/read-through	downstream	upstream	0	0	3	310	40	low	.	.	.	TGCAAGGATGCCCTGCTGGTGGGTGTTCCAGCTGGAAGTAACCCCTTCCGGGAGCCTAGATCCTGTGCTTTACTCTGAAGACTCccGAtTA...|...ATTACACCTCAACAAGAAGGCAACTGACAAACAGCCTTATAGCAAGCTCCCAGGTGTCTCTCTTCTGAAACCACTGAAAGGGGTAGATCCTAACTTAATCAACAACCTGG	.	.	.
TALL010	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	73	86	low	.	.	.	CTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTG	.	.	.
TALL010	MIR143HG	IL17B	+/-	-/-	5:149419786	5:149377025	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	1	1	0	17	16	low	.	.	mismappers(1)	GCCCAGCCTAGAATCCCAAGCCTTGCCTCGAGCAGCTCAGGCCCTGCGGGCAGGTGGGGCATAGACACCAGGATCCCTGTGAGTCTCTGTCACTTGGCCCCTCGGTGAGGGCAGAAACTGGGAAAAGAGTGACAAAG|CTGTTTCTTCTTACCATTTCCATCTTCCTGGGGCTGGGCCAGCCCAGGAGCCCCAAAAGCAAGAGGAAGGGGCAAGGGCGGCCTGGGCCCCTGGCCCCTGGCCCTCACCAGGTGCCACTGGACCTGGTGTCACGGATGAAACCGTATGCCCGCATGGAGGAGTATGAGAG	.	.	.
TALL010	RARRES3(4932),HRASLS2(1376)	HRASLS5	./-	-/-	11:63551394	11:63466372	intergenic	splice-site	deletion/read-through	upstream	downstream	1	1	0	7	6	low	.	.	.	GGCGCGTCTGGAGTTTGTTCCTTTTGATGTTAGGATGTGTTCGGAGTTTCTTCCTTCTGGTGGGTTCGTGGTCTCGCTGGCTCAGGAGTGAAgCTGCAGACCTTCGCG|GTGAGGAGTTTGAGGTGGGCAGCATTACTTCCATCTTTAGCAATCGGGCCGTGGTGAAATACAGTCGTCTGGAGGATGTGCTGCATGGCTGCTCCTGGAAGGTCA	.	.	.
TALL010	SLAIN2	SLAIN2(52255),SLC10A4(4876)	+/+	./+	4:48383778	4:48478467	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	2	119	1	low	.	.	.	CACAGATTTACAGACAAGCAATGTTAAAAATGAAG___AAAAACTAAGACGCAGTCTTCCAAACCTGTCCCGAACATCTAATACACAAGTTGACTCAGTGAAAAGCAGCAGAAGTGACTCAAATTTTCAAGTGCCAAACGGAGGAATACCTCGTATGCAACCTCAGGCTT...|...CCAGTCAGCTCTCCTGTTTGACGGATCTCTATTAAAAGCAAACCTTCCAGCTTCCTTTCAACAAAAGTGGCCAAAACAAACATGTCTGTACAATAGTCC	.	.	.
TALL010	LRRC27	HP1BP3	+/+	-/-	10:132344650	1:20780540	splice-site	splice-site	translocation	downstream	downstream	2	0	0	28	302	low	.	.	.	CCA___GGAGCGTAACCACGCTGAAAGCACTGAACCTAAGACACTGCCCTCTGGAATTCCCTCCTCAGCTCGTTGTGCAGAAGGGATTGGTGGCTATCCAGCG...GTGGGCAGTAGAACACTCTCTCCCCAGAAATCCAACTTCTCAAG|GTTGATTCTTCACCACACTGAAACCATTAGGAAAAATCCTTGTGGTTAACAGCAG	out-of-frame	WAVEHSLPRNPTSQ|g*	.
TALL010	DLEU2	RNASEH2B	-/-	+/+	13:50081823	13:50927407	splice-site	splice-site	inversion	upstream	upstream	0	1	0	110	892	low	.	.	.	CTTGGAGCAAAGGGCAGTCGGCGGAGCTTCGCCAAGGCTGGCGCAGTCG|AATATTTAAAAGATGCTTCAAAGAAGATGAAAAATGGGCTAATGTTTGTAAAACTGGTTAACCCCTGTTCAG___GAGAAGGAGCCATTTACTTGTTCAATATGTGTCTACAGCAGCTGTTTGAAGTAAAAGTTTTC	.	.	.
TALL010	DLEU2	RNASEH2B	-/-	+/+	13:50125302	13:50927407	splice-site	splice-site	inversion	upstream	upstream	0	1	0	34	892	low	.	.	duplicates(1)	CGCGAGCCCAGAGCTCCGATCCCTGCGCGGGCTCGAGAGCTCGCCCCGAACGGGGGTCTTCCTCCTCCGCCGTTGACAG|AATATTTAAAAGATGCTTCA...GGTTAACCCCTGTTCAG___GAGAAGGAGCCATTTACTTGTTCAATATGTGTCTACAGCAGCTGTTTGAAGTAAAAGTTTTCAAGGAAAAACACCATTCTTG	.	.	.
TALL011	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	9	12	3	41	50	high	.	.	.	GCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGC...GAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCC	.	.	.
TALL011	KMT2A	MLLT1	+/+	-/-	11:118484975	19:6270759	splice-site	splice-site	translocation	downstream	downstream	2	1	4	35	27	high	.	.	.	TCAGAGTGGACTTTAAG___GAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAGGCTTAGGAATCTTGACTTCTGTTCCTATcACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGGGCATGTAGAG|TGCACCGTCCAGGTGAGGTTAGAGCTGGGGCATCGCGCCCAACTGCGCAAGAAGCCCACCACGGAGGGGTTCACTCACGACTGGATGGTGTTTGTCCGCGGCCCCGAGCAATGTGACATCCAGCACTTCGTGGAGAAGGTGG	in-frame	RVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVE|CTVQVRLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKV	.
TALL011	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	1	2	0	9	5	high	.	.	duplicates(1)	CGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGG	.	.	.
TALL011	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	6	0	51	14	medium	.	.	low_entropy(2),mismatches(1)	CCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGG?CCG...___A...AGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCC	.	.	.
TALL011	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	7	3	3	212	236	medium	.	.	low_entropy(1)	CCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL011	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	37	236	low	.	.	read_through(14)	GAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTG	out-of-frame	KTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL011	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	6	5	1	990	224	medium	.	.	duplicates(1)	CTGGAATTTTCTGATTCTTTGATGTTGCAAGGTGAAATAACTCATCAGTCAGCATCCACTCTAGCCTGAGATTTCACATCACTCCCTTAAGTCTGAAAT...CACCCATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCC	out-of-frame	pivfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssic	.
TALL011	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	2	5	3	237	41	medium	.	.	low_entropy(1)	CCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAGGTGAAGACGGTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGG	out-of-frame	lphvcmtspfsg*vktvvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacrapleagralghppwtgghswssalswqqlw	.
TALL011	CPA4	CPA5	+/+	+/+	7:130312122	7:130346393	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	4	237	39	medium	.	.	low_entropy(2)	CCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAG___...G___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GCTGGGCTTTCCAGCCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGGGTGAGTGGCTGCTCCACAGTGGGAGGGA	out-of-frame	DKVARLAAKALASVSGTEYQVGPTCTTV|cwafqplgavls*	.
TALL011	CPA4	CPA5	+/+	+/+	7:130322655	7:130346407	CDS	splice-site	deletion/read-through	downstream	upstream	1	1	3	208	41	medium	.	.	low_entropy(2),mismappers(5)	CAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT___ATCCAGCTAGCGGGAGCAGCATCGACTGGGCgTATGACAACGGCATCAAATTTGCATTCACATTTGAGTTGAGAGATACCGGGACCTATGGCTTCCTCCTGCCAGCTAACCAGATCATCCCCACTGCAGAGGAGACGTGGCTGGGGCTGAAGACCATCATGGAGCAT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGG___GG	out-of-frame	KALASVSGTEYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTIMEH|plgavls*	.
TALL011	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	237	63	low	.	.	low_entropy(1)	GTGTGCATGACGTCTCCCTTCTCAGGATAGGTGAAGACGGTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCACACCCTGGAGGAG___ATATATAGCTGGATTGACAACTTTGTAATGGAGCATTCCGATATTGTCTCAAAAATTCAGATTGGCAACAGCTTTGAAAACCAG	out-of-frame	vcmtspfsg*vktvvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|caag*	.
TALL011	CPA4	CPA5	+/+	+/+	7:130312122	7:130349975	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	237	42	low	.	.	low_entropy(1)	GTGTGCATGACGTCTCCCTTCTCAGGATAGGTGAAGACGGTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGGACTTCTGGCGTGGCCCAGCCAGGCCCAGCCTCCCTGTGGATATGAGAGTTCCTTTCTCcGAACTGAAAGACATCAAAGCTTATCTGGAGTCTCATGGACTTGCTTACAGCATCATGATAAAGGACATCCAG___GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCACACCCTGGAGGAG___ATATATAGCTGGA	out-of-frame	vcmtspfsg*vktvvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|cgllawpsqaqppcgyessflrterhqslsgvswtclqhhdkghpgaag*	.
TALL011	CPA4	CPA5	+/+	+/+	7:130312122	7:130361143	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	237	46	low	.	.	.	ATTTTTTCTCACTCCACGGATTCCCCCTTCCCAGGACAAGGTGGtGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|ATATATAGCTGGATTGACAACTTTGTAATGGAG	out-of-frame	ffltprippsqDKVvRLAAKALASVSGTEYQVGPTCTTV|yi*	.
TALL011	CD34(42695),PLXNA2(68145)	CD34	./-	-/-	1:207954097	1:207900003	intergenic	splice-site	deletion/read-through	upstream	downstream	3	5	2	31	506	medium	.	.	duplicates(2),low_entropy(1)	GTGGAGATTTGAAGCATGAGAGGGATTTCAGGCTCCACTGCTGGCTTGAAGATGGAGGGGACCACCTGTTAAGAAATTTATGTGGCTCTAGGAGTTGAAAGCAGCCTCTAGCTGACAGCCAGCAAGAAAACAGGAATATCAGTCCTACAACCACAAGGAACTGAGTTTTGCCAAGAATAAGAATGGGCTTGAAGTAGAGTCTTCCTCAGAGCTTCCAG|CTTCTGGGTTCATGAGTCTTGACAACAACGGTACTGCTACCCCAGAGTTACCTACCCAGGGAACATTTTCAAATGTTTCTACAAATGTATCCTACCAAGAAACTACAACACCTAGTACCCTTGGAAGTACCAGCCTGCACCCTGTGTCTCAACATGGCAATGAGGCCACAACAAACATCACAG___GCAGAAATCAAATGTTCAGGCATCAGAGAAGTGAAATTGACTCAGGGCATCTGCCTGGAGCAAAATAAGACCTCCAGCTGT___GCGGAGTTTAAG	.	.	.
TALL011	CPA4	CPA4(15133),CPA5(5503)	+/+	./+	7:130312122	7:130339313	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	237	2	medium	.	.	.	CCAAACCATCCCAGAGCAGAGCAGCTGAGGAAGGTCAAGCTTCAGGATCGATTTTTTCTCACTCCACGGATTCCCCCTTCCCAGGACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GGTTACACAGCACATCATATGAAGAGTCAGAGTTCTACAAGACTTGTTATAAAAAGCAACAGAGTCCTGCTCCTCGCTTTCGTGCCAGGTCTTGCTCTCTGGCAATAACCACATTGAGTTCTTCTAGCCTTGATGCTCAACATTCAtAAGACTAG	out-of-frame	pnhpraeqlrkvklqdrffltprippsqDKVARLAAKALASVSGTEYQVGPTCTTV|wlhstsyeesefyktcykkqqspaprfrarscslaittlssssldaqhs*	.
TALL011	NBEA	RP11-467L19.16(3015),NBEAP1(11175)	+/+	./-	13:35110978	15:20646463	splice-site	intergenic	translocation	downstream	downstream	0	2	0	4	10	medium	.	.	.	ATCCTGCTGACAGTAGTGGCATTACACCTAAAGGATTAG|AGCCAAAGATTCCTGAAGACAGAGCTGATGCgATGTACTCAAGTGGGTCTCTGCCTCTCAGAGGTGGCCTTGgTCTTCAAGTTTCAGCAATTCTGGGAAGCCAAGGACACCTCCATCTCCTCCTCCCTGATCTGCAACTCATCTaAGA	out-of-frame	PADSSGITPKGL|epkipedradamyssgslplrgglglqvsailgsqghlhlllpdlqli*	.
TALL011	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	3	6	0	12	13	low	.	.	duplicates(1),low_entropy(2)	CCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAG	out-of-frame	RNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL011	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	5	3	0	240	14	low	.	.	.	GGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACAC...GGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvt	.
TALL011	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	6	0	0	34	41	low	.	.	duplicates(1),low_entropy(2),mismappers(19)	GAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATG...GCTACATGCAATTTTTCCAG___...CACAG___...TCACCCTCCAGAGGATAGAGGACCTG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCC	.	.	.
TALL011	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	2	117	41	low	.	.	mismappers(2)	CACgATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTgGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGG	.	.	.
TALL011	GFRA4	ATRN	-/-	+/-	20:3663354	20:3649255	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	1	3	2	148	35	low	.	.	low_entropy(2)	GAGGCACTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|GCTCTCTTGTGACGCGCAACACTGCCAGATGACAACCAATTCCTTCTTGGAAACAGGCTCCGAGCCCAGCGCCTCTTACTCCCTGCCATTCCCTTTTTCTGCCCTGAGGCCGGAGAAAGCTGTTTGCTGTCGGTTG	out-of-frame	MVRCLGPALLLLLLL|gslvtrntar*	.
TALL011	LINC01226	LINC01225	+/.	+/.	1:31523617	1:31524541	exon	intron	duplication	upstream	downstream	1	2	3	22	17	low	.	.	.	.	.	.	.
TALL011	FRDAP(110396),RNA5SP388(7129)	NRXN3	./.	+/.	14:78170674	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	2	3	0	6	5	low	.	.	.	.	.	.	.
TALL011	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	1	1	3	91	13	low	.	.	.	CATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGT...AGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTGCAGCTACTGAAAGTTTAAAGTTTAAGTAAAAAAATGAATAGCTTTCTTCAG___CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCG	out-of-frame	DNILKGFATSLSIILSTLISYFWLQDFVPTr|wlyassssscs*	.
TALL011	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	86	151	low	.	.	.	CACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTC...ATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGC	in-frame	IYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLT	.
TALL011	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	91	151	low	.	.	low_entropy(1)	CATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___G	out-of-frame	IYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL011	RP11-421L21.3(44106),SCARNA16(1779)	DPH5	./-	-/-	1:101131374	1:101013818	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	31	214	low	.	.	.	AAGACACTCACTGGTGGGTCTGAAATCACTGCTGCAATTGCTTCCTTTGTCAGGATTAAGCCAAGGCACTGAGCAGGGCTGAGCCTGCAAACTGAAGTCCCTCAGTTCTACGCCTGAGCAAG|GGCCACAACACACAGTGATCTTGTTCTAAGAGCAACAAAGCTGGGAATTCCTTATAGAGTTATTCACAATGCCTCCATAATGAATGCT...GTGGTTTACAG___ACACTTGGAGACCAGAAAGCTTCTTTGACAAAGTGAAGAAGAACAGACAAAATGGCATGCACACATTATGTTTACTAG___ACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAAG	.	.	.
TALL011	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	0	4	0	6	18	low	.	.	low_entropy(3),mismappers(3)	CGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGCAGCAACAATGGCAAACGTGCATCTGCCAGTGGCCAGCAGCCAGCTGCATCCCG	.	.	.
TALL011	Y_RNA(10458),AIM1(46468)	AIM1	./.	+/.	6:106465387	6:106519751	intergenic	CDS	deletion/read-through	downstream	upstream	2	1	1	7	47	low	.	.	.	.	.	.	.
TALL011	MPLKIP	CDK13	-/-	+/-	7:40134229	7:40094527	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	3	0	0	250	162	low	.	.	.	CCGGTCTAGGCCGTACGGGAGCAGTCACTCTCCGCGACACGGCGGCAGCTTCCCGGGGGGCCGGTTCGGGTCTCCGTCCCCTGGCGGCTACCCTGGCTCCTACTCCAGGTCCCCCGCGGGGTCCCAGCAGCAATTCGGCTACTCCCCAGGGCAGCAGCAGACCCACCCCCAG|TGGTGGAGCAGAACTGCTTCCTAGACCATCATTGCTAACATAAGGAGCAGAAGAGAAAGAAGAGGA	out-of-frame	RSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQ|wwsrtas*	.
TALL011	KCNJ12	PDLIM1P2(3684),RP11-728E14.3(7390)	+/+	./+	17:21419513	17:21449123	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	2	1	15	5	low	.	.	low_entropy(1)	AGGGCACCCACCCATCAGGTTGGGCACTGGCACAGGTGAACCCCACAGTCCCCGACCCTCTGCCCTGATTATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|GAAGCTTCCTGACACAGCCTGCACCCCAGTGGACTTCCCAAAGCAAGTTGAGTCTGACTTCGCACCCCTGACATCAGAATCATCTGACTTCTGGGCACGCCACTGAATACTGATGTACCTGAAGGAACCCTGG___GGTGTATGAAGAAAGGGCT	.	.	.
TALL011	PABPC4L	AC096763.1(123097),PABPC4L(29683)	-/-	./-	4:134200053	4:134166650	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	3	48	1	low	.	.	.	CCAGGGGGTAAAACTCTATATTAAGAACCTTGATGACACCATCGATGATGAAAAACaACGAAACGAATTTTCTTCATTTGGATCAATTAGCAGAGTTA...|...AGAAAATCAGCTCTGTTACATCTGCCGCCTCCTGTGAGtACAAGGCACAGAAAGTAGACCCTGTAACCCTCAGAGGGCCTGAAGGAAAGCGATGCTGGTGTGACCTGCCCAAGAGGATGGTGCCCAAGGCAGAGCATTCTAGACCCTCATAGGCAACAGAGCCAG___GAATGGAAGTGAGGATACAGAGAATGCAC	.	.	.
TALL011	CTB-113I20.1(17107),TCF7(15564)	VDAC1	./-	-/-	5:134099147	5:133993018	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	47	808	low	.	.	low_entropy(1)	CAGAGGGTAAGCCGGAGCCACCCTCCCCAAGCCAGACCCAACCAGATGCTGGCTTTTTTTGAcGGCCTAAATCACAGTCCACCCAAAGCCCTACTTTTAAGAGTCTGTGCTCGACCTGAAGCACACAGGCTGTGAGCTG|CAGAAGATGGCTGTGCCACCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAG...GAGAATGGATTG___GAATTTACAAGCTCAGGCTCAGCCAACACTGAGACCACCAAAGTGACGGGCAGTCTGGAAACCAAGTACAGATGGACTGAGTACGGCCTGACGTTTACAGAGAAATGGAATACCGACAATACACTAGGCAC	.	.	.
TALL011	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	1	2	0	5	5	low	.	.	.	GGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCAT	out-of-frame	ESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaalt	.
TALL011	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	83	5	low	.	.	.	CATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACC	.	.	.
TALL011	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47997739	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	83	2	low	.	.	.	ATAACATCTATTGTTATGAATTTTTTTTCCTTCCACAGTGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|TTCATGCCGTGGAGGAAGTGGcGAAGG	.	.	.
TALL011	RP13-487K5.1(138801),GUCY1A3(10451)	GUCY1A3	./+	+/+	4:155656260	4:155696756	intergenic	splice-site	deletion/read-through	downstream	upstream	0	1	2	52	448	low	.	.	low_entropy(1)	CAGGAGAAGCACTGTTCTCCTCTGGCAGCAGAAGACACCTGCAGGGGCAGAGGACCTTGTTGAGATCTGTATCAACCTCATGCCTGCTGCAGGCAGCTGACATCCTCAAGG|ACATCCCAGTTACCAGTGTCCTTGAATTGATAGTGGCTTCTGTTTGTCAGTCTCATATAAGAACTACAGCTCATCAGGAGGAGATCGCAGCAGGGTAAGAGACACCAACACCATGTTCTGCACGAAGCTCAAGGATCTCAAGATCACAGGAGAGTGTCCTTTCTCCTTACTGGCACCAGGTCAAGTTCCTAACGAGTCTTCAGAGGAGGCAGCAGGAAGCTCAGAGAGCTGCAAAGCAACCGTGCCCATC	.	.	.
TALL011	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	1	34	3	low	.	.	mismappers(1)	CTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCG...AGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGT-AATTATAACAAAACCCAATGGACCGTGAAAGCC	out-of-frame	FAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmp	.
TALL011	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	0	0	299	13	low	.	.	mismappers(2)	ACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCgGG	.	.	.
TALL011	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	2	0	23	3	low	.	.	mismappers(1)	CAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGA	out-of-frame	NCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL011	ATXN3	ATXN3	-/.	-/.	14:91847246	14:92059943	intron	3'UTR	duplication	upstream	downstream	2	0	0	1	45	low	.	.	.	.	.	.	.
TALL011	MSH2	KCNK12(32071),AC079250.1(87706)	+/+	./+	2:47512421	2:47603010	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	2	4	3	low	.	.	mismappers(1)	GAGAATCGCAAGGATATGATATCATGGAACCAGCAGCAAAGAAGTGCTATCTGGAAAGAGAG___AACCTCAGAGTGACAGAGCCAAAAGACCAGTGCCTCATTTTGCTGACATGGAAAAGGAAACTTCGTGGGGGAAAGAGATCTGCTTGCAGTCGGCCAGAGAGACAGAACCgGGGCAGTGG...|...GGACACAGAGATGCCAGAGAAATGgGGTCAGTTCTTCCTCCTCCTCGTTCTTAACAACACTTATTAAATAACTACTACTATTAACTGGGGACCTGCTGGG	.	.	.
TALL011	C6orf183	CCDC162P	+/+	+/+	6:109270176	6:109285976	exon	splice-site	deletion/read-through	downstream	upstream	0	1	1	11	2	low	.	.	mismatches(1)	CTGCATTCAGGAGTGGAAAATATGCAGGTGACTCTTGCATGCCAAGCTGCTCAGAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGC...CCTCAAGGGAGCTGTCCTGCTAATGTCAAG|GATGAAATTGGAAAAGTCAAGAGAGATGTTATGGTTGAATATTGTCAGAA___GTTTAACCACCGCATGTCTCACTATGCTCTTCGGGGTCAGATCATGGCA	.	.	.
TALL011	IQCB1	ARHGAP21	-/.	-/.	3:121831173	10:24584198	intron	3'UTR	translocation	upstream	downstream	0	2	0	24	149	low	.	.	.	.	.	.	.
TALL011	ARL17A	NSFP1	-/-	+/-	17:46517094	17:46475863	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	0	1	33	2	low	.	.	low_entropy(2)	GTTGGCAGCCACTTCAAAATCAGACCTCTGTGGCAGCATTTTTTCCAGAACACAAAAG___AGCTATCAGCTTCCCAGTTTGCACAATTCATCAAGAAATTATGCGGGGTCACCGGCACAAATGATGAGGCATCTCCTGGAAGCTTAACTTCTTgTCCATCCCATCTCTTGGACAGATGATGCCAGTTAATTACTTTGAAT|GCCAGTGGTTTTCAGACTTCATAAAACAG...AAGTCATCTTCAGAAGCACCTCAGTACATAAAACAGCTAAAAGAGGAAGTTATAATAGTGATGTAGGATCTGAAACGCACTCCCTGGCCCTCACTGACC	out-of-frame	VGSHFKIRPLWQHFFQNTKELSASQFAQFIKKLCGVTGTNDEASPGSLTScPSHLLDR*cqlitln|asgfqts*	.
TALL011	CNOT2	CPSF6	+/+	+/+	12:70311017	12:69251129	splice-site	splice-site	duplication	downstream	upstream	0	2	0	227	243	low	.	.	.	CGACAGTGACTACCATGACGAAAACATGTACTACAGCCAGTCTTCTATGTTTCCACATCGGTCAGAAAAAGAT|GAAGCTGAATATGGTGGGCATGATCAGATAGATTTGTATGACGATGTCATATCTCCATCTGCAAATAATGGAGATGCCCCAGAAGACCGAGATTACATGGATACTCTCCCACCAACTGTTGGTGATGATGTGGGTAAAGGAGC	in-frame	DSDYHDENMYYSQSSMFPHRSEKD|EAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKG	.
TALL013	TAL1	TRBC2	-/-	+/+	1:47229196	7:142801041	splice-site	splice-site	translocation	upstream	upstream	300	300	300	2950	12222	high	.	.	duplicates(135),inconsistently_clipped(5),mismatches(1)	CTCAGAGATAGTCCAGTACTCAGAGAGGGCAGGCAGAAACACTTGAAAAATG___...GCCACACGCGTACCCCCGTAGCGGAAAAAC___ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG|AGGACCTGAAAAACGTGTTCCCACCCgAGGTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGGGGTCAGCACAGACCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCCGCCTGAGGGTCTCGGCCACCTTCTGGCAGAACCCCCGCAACCACTTCCGCTGTCAAGTCCAGTTCTACGGGCTCTCGGAGAATGACGAGTGGACCCAGGATAGGGCCAAACCTGTCAC	.	.	.
TALL013	TAL1	TRBC2	-/-	+/+	1:47229196	7:142801944	splice-site	splice-site	translocation	upstream	upstream	3	21	36	2950	611	high	.	.	duplicates(6),mismatches(8)	TGAGCAGCGCTCGCCGAGGCCGGCGCCTTCGAGCCGGTAGCTGCGGGCTTCGGTTCCCGCTGCACTCCGGCTTCATCCATTTCTG___ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG|ACTGTGGCTTCACCTCCG___AGTCTTACCAGCAAGGGGTCCTGTCTGCCACCATCCTCTATGAGATCTTGCTAGGGAAGGCCACCTTGTATGCCGTGCTGGTCAGTGCCCTCGTGCTGATGGCCATG___GTCAAGAGAAAGGATTCCAGAGGCTAGCTCCAAAACCATCCCAGGTCATTCTTCATCCTCACCCAGGATTCTCCTGTACCTGCTCCCAATCTGTGTTCCTAAAAGTGATTCTCACTCTGCTTCTCATCTCCTACTTACATGAATACTTCTCTCTTTTTTCTGTTTCC...___A	.	.	.
TALL013	TAL1	TRBC2	-/-	+/+	1:47229196	7:142802105	splice-site	splice-site	translocation	upstream	upstream	10	5	32	2950	8824	medium	.	.	duplicates(4)	CGGCTTCATCCATTTCTG___ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG|AGTCTTACCAGCAAGGGGTCCTGTCTGCCACCATCCTCTATGAGATCTTGCTAGGGAAGGCCACCTTGTATGCCGTGCTGGTCAGTGCCCTCGTGCTGATGGCCATG___GTCAAGAGAAAGGATTCCAGAGGCTAGCTCCAAAACCATCCCAGGTCATTCTTCATCCTCACCCAGGATTCTCCTGTACCTGCTCCCAAT	.	.	.
TALL013	TAL1	TRBC2	-/-	+/+	1:47231047	7:142801041	splice-site	splice-site	translocation	upstream	upstream	2	0	8	753	12222	medium	.	.	.	GCTTGGGTGGGCGGACAGCGCCCGGTCGGCGGCTGCTCTGCCCGGAGGCCCGCCTGTGCCTAGGTGTTTGAGGGGTTCGTTGGTGAGTGGGAGGCTCCTCCAGGCTTGAAGCTGAGCAGCGCTCGCCGAGGCCGGCGCCTTCGAGCCGGTAGCTGCGGGCTTCGGTTCCCGCTGCACTCCGGCTTCATCCATTTCTG|AGGACCTGAAAAACGTGTTCCCACCCgAGGTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAGCTGAGCTGGTGGGTGAATGGGAAG...___ATACTGCCTGAGCAGCCGCCTGAGGGTCTCGGCCACCTTCTGGCAGAACCCCCGCAACCACTTCCGCTGTCAAGTCCAG	.	.	.
TALL013	RP1-18D14.7	TRBC2	+/-	+/+	1:47227888	7:142801041	exon	splice-site	translocation/3'-3'	upstream	upstream	2	34	300	223	12222	high	.	.	duplicates(43)	CAGGAGCCTAAGAATTAATTGGAGGGTAAAAATGTGTCATAACAGAGCTTGAGCTCAGTCTGCAACTGCAGTGCACACTGTCACTCGGTTAGAAGCTGGGGCTTAAGCATGGATCACTGGGCTCACACCGGTGTGTCAGGACGGAGAGCAGTGAG|AGGACCTGAAAAACGTGTTCCCACCCgAGGTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGGGGTCAGCACAGACCCGCAGCCCCTCAAGGAGCAGCCCGC...___...C...___...AGGGTCTCGGCCACCTTCTGGCA...___AACCCCCGCAACCACTTCCGCTGTCAAGTCCAGTTCTACGGGCTCTCGGAGAATGACGAGTGGACCCAGGATAGGG	.	.	.
TALL013	TAL1	TRBV25-1	-/-	+/+	1:47229196	7:142791694	splice-site	splice-site	translocation	upstream	upstream	1	30	151	2950	17427	high	.	.	duplicates(88),mismappers(1),mismatches(1)	CTCAAAATGGCCACACGCGTACCCCCGTAGCGGAAAAAC___...GGCAGATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG|AGGACCTGAAaAAcGTGTTCCCACCCGAG___GTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAG...___GTGCACAGTGGGGTCAGCACAGACCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCCGCCTGAGGGTCTCG	.	.	.
TALL013	TAL1	TRBV25-1	-/-	+/+	1:47231047	7:142791694	splice-site	splice-site	translocation	upstream	upstream	0	1	3	753	17427	medium	.	.	.	AGGCCCGCCTGTGCCTAGGTGTTTGAGGGGTTCGTTGGTGAGTGGGAGGCTCCTCCAGGCTTGAAGCTGAGCAGCGCTCGCCGAGGCCGGCGCCTTCGAGCCGGTAGCTGCGGGCTTCGGTTCCCGCTGCACTCCGGCTTCATCCATTTCTG|AGGACCTGAAaAAcGTGTTCCCACCCGAG___GTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAG	.	.	.
TALL013	TAL1	TRBV28	-/-	+/+	1:47229196	7:142791694	splice-site	splice-site	translocation	upstream	upstream	1	30	151	2950	17427	high	.	.	duplicates(88),mismappers(1),mismatches(1)	CTCAAAATGGCCACACGCGTACCCCCGTAGCGGAAAAAC___...GGCAGATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG|AGGACCTGAAaAAcGTGTTCCCACCCGAG___GTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAG...___GTGCACAGTGGGGTCAGCACAGACCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCCGCCTGAGGGTCTCG	.	.	.
TALL013	TAL1	TRBV28	-/-	+/+	1:47231047	7:142791694	splice-site	splice-site	translocation	upstream	upstream	0	1	3	753	17427	medium	.	.	.	AGGCCCGCCTGTGCCTAGGTGTTTGAGGGGTTCGTTGGTGAGTGGGAGGCTCCTCCAGGCTTGAAGCTGAGCAGCGCTCGCCGAGGCCGGCGCCTTCGAGCCGGTAGCTGCGGGCTTCGGTTCCCGCTGCACTCCGGCTTCATCCATTTCTG|AGGACCTGAAaAAcGTGTTCCCACCCGAG___GTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAG	.	.	.
TALL013	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	10	12	3	91	55	medium	.	.	low_entropy(1),mismappers(3)	CCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGC	.	.	.
TALL013	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	1	0	318	19	medium	.	.	.	ATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCAC...GCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGG...ATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAG	.	.	.
TALL013	TNNT3	BCL2L2-PABPN1	+/-	+/+	11:1938155	14:23322181	intron	splice-site	translocation/3'-3'	upstream	upstream	0	2	0	14	925	medium	.	.	.	CCCGGGGCACCCTCCCTCTGTCCTCCTTTCTTTGCCTGAGGTACCACTGCAGACAGACCCCT|GAGCTGGAAGCTATCAAAGCTCGAGTCAGGGAGATGG...GAATATGAGTCCACCTCCAGGCAATG___CTGGCCCGGTGATCATGTCCATTGAGGAGAAGATGGAGGCTGATGCCCGTTCCATCTATGTTtGCAATGT	.	.	.
TALL013	APOL2	PACS2	-/-	+/+	22:36233402	14:105368459	splice-site	splice-site	translocation	upstream	upstream	0	2	0	58	44	medium	.	.	.	CTTG___GACAAGAGGACCCTGCCTTGGTGTGAGAGTGAGGGAAGAGGAAGCTGGAACGAG|GACTTGGACGAGGACGACTTTGACGTGGGGAAGCCGAAGAAGCAGCGGAGATCGATTGTAAGAACGACGTCCATGACCAGG___CAACAGAACTTCAAGCAGAAAGTGGTAGCGC	in-frame	LDKRTLPWCESEGRGSWNE|DLDEDDFDVGKPKKQRRSIVRTTSMTRQQNFKQKVVA	.
TALL013	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	11	0	0	30	32	low	.	.	low_entropy(2),mismappers(14),mismatches(2)	CTACATGCAATTTTTCCAG___...CAGAATTCCACAG___...GACCTG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATG	.	.	.
TALL013	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	1	97	32	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	CTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGG	.	.	.
TALL013	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	5	0	77	109	low	.	.	.	ATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCC	in-frame	MAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSA	.
TALL013	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	4	0	0	45	109	low	.	.	.	GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGC	out-of-frame	FFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL013	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21904258	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	3	2	2	11	15	low	.	.	mismappers(2)	GGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAACACACAGGCAGCTGGATGTTGAGAGGAGCACATCAGCAGGCACCAGCACACTGGCAGGCCACTGACCAGCAGAACGCCTTGGAGTTTGGCCAGGGCAGTCGGAGGACAGCCCAGGCCGCCCAGGCTGCCGAGTGGCCTGACCCAAGG	out-of-frame	MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg*	.
TALL013	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	5	1	1	46	13	low	.	.	duplicates(1),mismappers(3)	AAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCC	out-of-frame	KEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL013	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	147	223	low	.	.	low_entropy(2)	GTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___...ACGGCCGCCCCAGGAGGGTCCTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGC	out-of-frame	taapggslfgGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL013	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	36	223	low	.	.	duplicates(1),read_through(8)	CAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAAC	out-of-frame	QRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL013	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	3	1	8	20	low	.	.	.	TTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAG	.	.	.
TALL013	CHST2	SLC9A9	+/+	-/+	3:143123487	3:143529024	3'UTR	intron	deletion/5'-5'	downstream	upstream	0	0	4	60	5	low	.	.	mismappers(1)	CTTGAAGCAGAGACCAATGTTTTGGTGCTGAGGCTGGTTCAGAAAAAGGATTTTTAAAAAAAGTATGTAATTTTTAAAAGTTCTGATGATTAGAACACAGACCTCAGGAAAGTAGCGTGAACATACTGCTGGCGATGGcAGCAGCTTCGTTGGTTTAGCAA...|...ATGAGAGGGACAGTGCCGGTGCCATGTGGGAGGAGACAGAGCTGCAGATGAGG	.	.	.
TALL013	COQ2	PLAC8(80238),RP11-576N17.5(16199)	-/-	./-	4:83261717	4:83217313	3'UTR	intergenic	deletion/read-through	upstream	downstream	0	0	3	9	5	low	.	.	mismappers(1)	ATCTGCTTTAACACCTATCAGTTGGGTGATCTTGGGCAAGTTCCCTGACCTCTCTGTGGCTCACTCGGGGATAATCATAATACCTTTCTCATGCATTTCAAAATTTTCTGTCTTCCCCTGCGAATGGAGATTTCATGG...|...TG___GCTGGAGTACAGTGGCGCAATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCATGCTTCAG	.	.	.
TALL013	GFRA4	ATRN	-/-	+/-	20:3663354	20:3647187	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	1	2	0	92	21	low	.	.	low_entropy(2)	GAGGCACTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|TTGAGACAGTCCCAAGAACAGTTTTCCACAGTGAACCTGAGTGTCATTCCTAGTTCTCTCACTGGCTCTACACTGGCCTCCTCCAGCAACCATCAGCTCATCCCTGGACCTGTAATTAAATCAAGTATTTCCTATGCAAAAGTAAAAGGTTAGATGCTGGAACACGGATGGGAGAAACCGTCAAAGAAAGCTTGTGATCATGCAG___GG	out-of-frame	MVRCLGPALLLLLLL|vetvprtvfhsepechs*	.
TALL013	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	3	0	0	3	5	low	.	.	.	GTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTG	out-of-frame	LFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvk	.
TALL013	RP11-80H8.4	SLC9A9	+/+	-/+	3:143127648	3:143529045	intron	intron	deletion/5'-5'	downstream	upstream	0	0	3	51	4	low	.	.	mismappers(1)	GAAGTATCTATTTGGAGTGTTTTTCTGACCCTGACACGGTATGTGGAGGTGGATGAAAGCAGCGAAGTTTCATCTGAGAACC___ATG...|...CCATGTGGGAGGAGACAGAGCTGCAGATGAGGAGG___ATGAGCAGAACAGAAGCCACTCCTATGACTCTAGGACGGAAGAATGAGAATGAGGAAACTGGGG	.	.	.
TALL013	ARAP2	RNU6-573P(374422),ARAP2(77796)	-/-	./-	4:35983046	4:35870425	intron	intergenic	deletion/read-through	upstream	downstream	0	0	2	0	3	low	.	.	mismappers(1),mismatches(1)	CTACCTCTCAGGCTCAAGGGGTCCTCCCACCTCAGCCTTCCTAGTAGCTGGGACCACAGGTGTATGCCACCACACCCAG___CCACTGCACCCTTGTTGAGA...|...AGATTACTTACTAATGGATGTAATTCCTGACACTTAGCTGGAGAAAAATTGCTTTATTGGGCCAGATAAACTTGCCAG___TGCAATGCAATGAAACAGAT	.	.	.
TALL013	EIF1B-AS1	MYRIP	-/-	+/-	3:40301293	3:40154298	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	19	1	low	.	.	.	GTGGATCACAAGAACTAATCTTTCATGATTTGGAAACCGGAAGGAAAGAAGCACTTTTGTAGCTGACTTACCTCAATGACATGACCAGTGTCTGAGCCT...|...AGGCCTAATCTGGTCAGCTGCTGTGAGCTGCAGGAGAAGGAGAAAGGTTCGCTTGGGAGCACTGCTGAG	.	.	.
TALL013	EEF1A1P6	FAM126A	-/-	-/-	7:22511333	7:22908067	exon	intron	deletion/read-through	downstream	upstream	0	0	2	173	0	low	.	.	mismappers(1),mismatches(2)	...CCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCA...GCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTT|...GGACTTAAAGGAG	.	.	.
TALL013	CTD-2521M24.9	CTD-2521M24.9	+/+	+/+	19:17414656	19:17413535	exon	intron	duplication	downstream	upstream	2	0	0	27	11	low	.	.	.	CCAGCCTCTTAACCAGCCCAGGGCTGAGTGTTGTTTATAGTATTAATATGTTTCTGGCTGGGCTCAGTGGCTCATGCCTGTggTCCCGGCACTATGGG...AGGCAGGCGGATCACTTGAGG|CCAGGCTGGTCTCCAACTCCTGACCTCAGGTGATCTGCCACTCAGGAGGCTGGGTAGGAGGATCCCTTGAGCCCAAGGG	.	.	.
TALL013	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	0	50	66	low	.	.	.	CTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGCAAGAGAGAAAGTGAATACGCTGATATAAGAAGCAAG___AAACCTTCCTTCCTTCCAGATGTGTGTCAGTAGAATTACAGAGTGTCCACGGAAACAGCTCATGCCCTAGTGTACAGTGGTGCAGCCAATGAGTGACCTGAAGTCTATGAGCAACACTCATTGTCCCAATGTGGGACGAGTGACCGAAGCTGAACCCACAACAGCCTTCCTGTGATATTCCACGTGGTG	.	.	.
TALL013	CTD-2521M24.9	MVB12A	+/+	+/+	19:17414656	19:17413535	exon	intron	duplication	downstream	upstream	2	0	0	27	11	low	.	.	.	CCAGCCTCTTAACCAGCCCAGGGCTGAGTGTTGTTTATAGTATTAATATGTTTCTGGCTGGGCTCAGTGGCTCATGCCTGTggTCCCGGCACTATGGG...AGGCAGGCGGATCACTTGAGG|CCAGGCTGGTCTCCAACTCCTGACCTCAGGTGATCTGCCACTCAGGAGGCTGGGTAGGAGGATCCCTTGAGCCCAAGGG	.	.	.
TALL013	RORA-AS1	RNASEH2B	+/+	+/+	15:60479398	13:50969932	splice-site	splice-site	translocation	downstream	upstream	0	1	0	11	211	low	.	.	.	TGATAAATTGGAAGGCGGACAAGCGACAAGTGCGGTACTGGAAAGACCCAAACATACTTGGTTGTGACCTCAG|ATGGCAGCACAAAGACAGAAAAGGGGC...CCCAGAGGACTCGGACTTTTTCTTCTGCACTTTTTTGGAAAATCGCCAGGTGCCAAAAGGTGCATTTTAAAGCGCTGACTGTAAATGCTTTATTTCTTTG	.	.	.
TALL013	PAN3	DNAJC9	+/+	-/-	13:28270866	10:73246176	splice-site	splice-site	translocation	downstream	downstream	0	1	0	69	470	low	.	.	.	GTCGAGTTATGGATCCAACAAAGATTCTGATAACTGGCAAAACAAG|ATATCTTTAGAGGACATTCAAGCTTTTGAAAAGACATACAAAGGTTCGGAAGA...GCAGGCCTATCTGGACTTCAAGGGTGACATGGATCAGATCATGGAGTCTGTGCTTTGCGTGCAGTACACAGAGGAACCCAGGATAAGGAATATCATTCAG	out-of-frame	RVMDPTKILITGKTr|yl*	.
TALL014	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	17	17	24	113	112	high	.	.	duplicates(2),low_entropy(2),mismappers(1),mismatches(14)	GGAGCCGGCTCCCCAGCCTGCTTTCTCCTGCCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCGGTACTTCTTGGCTGTTTGG___...CAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGCGGGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCT	.	.	.
TALL014	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	18	1	54	54	high	.	.	duplicates(1),low_entropy(5),mismappers(2),mismatches(2)	AGATGAAGTCTCACTGTATTACCCAGGCTGGTCTCAAAACTCCCGGGCTCCAGAGATCCTCCTTCCTCAACCTCCCAAAATGCTGGGATTACAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTG	.	.	.
TALL014	NF1	SUZ12	+/+	+/+	17:31206371	17:31940286	splice-site	splice-site	deletion	downstream	upstream	1	5	2	74	152	high	.	.	low_entropy(2)	TACATTTCACTATGTGCTGGTAAATTCACTCCATCGAATCATCACCAAT___TCCGCATTGGATTGGTGGCCTAAGATTGATGCTGTGTATTGTCACTCGGTTGAACTTCGAAATATGTTTGGTGAAACACTTCATAAAGCAGTGCAAGGTTGTGGAGCACACCCAGCAATACGAATGGCACCG|AGCCAACACAGATCTATAGATTTCTTCGAACTCGGAATCTCATAGCA___CCAATATTTTTGCACAGAACTCTTACTTACATGTCTCATCGAAACTCCAGAACAAACATCAAAAG___GAAAACATTTAAAGTTGATGATATGTTATCAAAAGTAGAGAAAATGAAAGGAGAGCAAGAATCTCATAG___CTTGTCAGCTCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG___ATAAGCCATCACCAAACTCAGAAAATGAACAAAATTCTGTTACCCTGGAAGTCCTGCTTGTGAAAGTTTGCCACAAAAAAAGAAAG___GATGTAAGTTGTCCAATAAGGC	out-of-frame	TFHYVLVNSLHRIITNSALDWWPKIDAVYCHSVELRNMFGETLHKAVQGCGAHPAIRMAP|sqhrsidffelgis*	.
TALL014	NF1	SUZ12	+/+	+/+	17:31207195	17:31940286	intron	splice-site	deletion	downstream	upstream	2	2	4	11	152	high	.	.	.	AAGATAACTCTGTCATTTTCCTACTTGTTCAGTCCATGGTGGTTGATCTTAAG___AACCTGCTTTTTAATCCAAGTAAGCCATTCTCAAGAGGCAGTCAGCCTGCAGATGTGGATCTAATGATTGAC...CTTGTTTCTTGCTTTCGTATAAGCCCTCACAACAACCAACACTTTAAG___ATCTGCCTGGCTCAGAATTCACCTTCTACATTTCACTATGTGCTGGTAAATTCACTCCATCGAATCATCACCAAT___T...TGGTGGCCTAAGATTGATGCTGTGTATTGTCACTCGGTTGAACTTCGAAATATGTTTGGTGAAACACTTCATAAAGCAGTGCAAGGTTGTGGAGCACACCCAGCAATACGAATGGCACCG___ATGCCAACCAGTCACTGTTTTGCATGGCAGTGGGCTTCTGTGGCT|AGCCAACACAGATCTATAGATTTCTTCGAACTCGGAATCTCATAGCA___CCAATATTTTTGCACAGAACTCTTACTTACATGTCTCATCGAAACTCCAGAACAAACATCAAAAG___GAAAACATTTAAAGTTGATGATATGTTATCAAAAGTAGAGAAAATGAAAGGAGAGCAAGAATCTCATAG___CTTGTCAGCTCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAA	out-of-frame	WWPKIDAVYCHSVELRNMFGETLHKAVQGCGAHPAIRMAPmptshcfawqwasva|sqhrsidffelgis*	.
TALL014	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	18	36	20	146	80	medium	.	.	duplicates(2),low_entropy(4),mismappers(1),mismatches(4)	CCAGGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGAT	.	.	.
TALL014	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	6	3	4	19	17	medium	.	.	low_entropy(1),mismatches(1)	CTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCcGGG	out-of-frame	WFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL014	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	6	3	112	55	medium	.	.	low_entropy(6),mismatches(2)	CCGGCGGCCAACATGATGGAGAACCGGCCGCTGCCCGCCCTGCAGGTGCCCGAGCCGCAGGGTGCGCCCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCT...CGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCA?GTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACT...___CTGACAGTCCGTTTGAAAGACATCTGTTCCATaACTAAAGAAAAAACAGaTCGCCTCATTCCCAATGCCATCCAAGTTTGC	.	.	.
TALL014	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	5	6	1	167	285	medium	.	.	low_entropy(1),mismatches(2)	GTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTAT	out-of-frame	VYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL014	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	208	285	low	.	.	duplicates(1),mismatches(2)	CAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCAC	in-frame	QLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFF	.
TALL014	ESYT2	ESYT2	-/-	-/-	7:158741676	7:158742334	CDS	intron	duplication	upstream	downstream	2	4	6	1226	64	medium	.	.	.	CAAGTTTAATTTTTATGTTTATGTCCACCTCTAGGTGCTCCATCTCGAAAAGCGAGAAAGGCCTCCAGACCACCAACACTCAGCTCAAGTCAAACGTCCCTCTGTGTCCAAAGAGGGGAGGAAAACATCCATCAAATCTCATATGTCTGGGTCTCCAGGCCCTGGTGGCAGCAACACAGCTCCATCCACACCAGTCATTGGGGGCAGTGATAAGCCTGGTATGGAAGAAAAGGCCCAGCCgCCTGAGGCtGGCCC|CCAGGTTGTGTGGCACCAGAGGGTCAGCTTCAGGGGGGTGGCCTGCCCTTCCACACCAGGCTTATCACTGCCACCGCCCTGTTGCTGCCACCAGAGCCTGAAGACGCAGGCCTCGGCGATGCCCCAGCTACTTGGCAGGCTGAGGCGGGAGGATCTCTTGAGGCCAGGAGCTTGcGGTGTAGTGCGCGATGGTCACCCCTGTGgAGAGCTACAGCACTCTGGCCTGTGCAGCTTAGCAGGTCCTCATCTCTGaGAAAAAAGcGGTATTTG	out-of-frame	kfnfyvyvhl*VLHLEKRERPPDHQHSAQVKRPSVSKEGRKTSIKSHMSGSPGPGGSNTAPSTPVIGGSDKPGMEEKAQPPEAGp|qvvwhqrvsfrgvacpstpglslpppccchqslktqasampqllgrlrredllrpgacgvvrdghpcgelqhsglcslagphl*	.
TALL014	RP11-680G10.1	GSE1	+/+	+/+	16:85357643	16:85648552	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	1	17	181	medium	.	.	duplicates(2),mismatches(2)	TTCCTATACACCCTGCGAGCAAGCCACAGCCTGTTGGTGGATGACGGACAGCAGCTGATCATCGGTGCTTGCGTGGAGTGTGGGACCCTGGTGTGTGCGGGCCAAGGGCTCACCCGCCAAGGACCCATGAGCTGGAGCTCCCCGGTGGCAGCAGCGACGAAG...CTGGAAGCATCTGCAGCCAGCCACCCTCCCACCCGGGAGTCCGAGACCCGGCCACGCGCCCCCACGGAGACCCTGCCCAGAGGCCCCAGGATGGCCCAGGAGCTGAGGCCAGCACAGTGTCTGCAGAGCAGCCGGGAGGAGGACGGACCAGACCTTACTGGTGCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGG...AACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGAC...CGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCGAGGACTACCTGAGAAGCTTCCGGCCCTACCACACCACCGACGACCTCCGCATGTCCTCACTGCCTCCCCTCGGCCTGGACCCGGC	.	.	.
TALL014	POLR2B	POLR2B	+/.	+/.	4:57006529	4:57007148	intron	intron	duplication	upstream	downstream	2	0	3	19	54	medium	.	.	.	.	.	.	.
TALL014	AC004967.7	ASNS	-/-	-/-	7:97928710	7:97869813	intron	splice-site	deletion/read-through	upstream	downstream	2	0	2	205	140	medium	.	.	duplicates(1)	CGGTGTTCTAGCAGGTGGCTGCTTTCTCTGGGCTGGCTGTGGGAGGCTCCCGAGGTGGGGACCCGGCCGGGATGGCTGCAGCGGCGGCCGGGGCTGGGAGCGGGCCCTCGGCGGCCCAGGAGA...ATAAAGCCCCGTCAG...TGGTGGGTCTCACTGACTTCAAGAATGAAGCCGCGGACCCTCCTG___GCGGAATTCTCCACGAGTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL014	IST1	IST1	+/.	+/.	16:71916102	16:71921870	intron	intron	duplication	upstream	downstream	2	0	2	99	46	medium	.	.	.	.	.	.	.
TALL014	PSME4	PSME4	-/-	-/-	2:53870632	2:53873043	exon	intron	duplication	upstream	downstream	1	2	0	32	17	medium	.	.	duplicates(1)	AGAATATGAAAGCAATCTAGTCAGTATTTATGAAAATAAACTTTGGTGGCTGGGTGCGGTAGCTCATGCCTGTAATCGCAGCACTTTAGGA|TGGTCTCGATCTCCTGACCTCGTGATCTGCCTGTCTCAGCTTCCCAAAGTGCTGGGATTACAGTCGTGAGCCACCACGCCTGGCCTGGTTATAACAACTCTTAACAGACTTCAATTAAAATATTTACAGCTGTGATTTTTTTTTTTTAATTTCTTATTATTCTTTAAAAACTAACCTAAAG	.	.	.
TALL014	G3BP2	CCNG2	-/-	+/+	4:75673208	4:77158533	splice-site	splice-site	inversion	upstream	upstream	0	1	2	570	332	medium	.	.	.	CTTGTCGCACGTCGCAGCGCCTGGCGCCCGGGAAGAGGTGGTTGTGAGGCAGACGAACTCGCGGCTCTCCGGCTTCCGAGGCTTCCGAGTTGTCGGAGGAAGGGGGCGGCGAGCAATAAGAACCCGCCGCACCCGGTCCTCAGCGACTCTTCTGACCTCCGCGCGACGTACCCGCCGCCGCCGTTGGCTGGAG|ATGAAGGATTTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACTTCTCGGGTTGTTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGGCTGAGTTTGATTGAGGCTACCCCGGAG___AATGATAACACTTTGTGTCCAGGATTGAGAAATGCCAAAGTTGAAGATTTAAGGAGTTTAGCCAACTTTTTaGGATCTTGCACTGAAACTTTTGTCCTG	.	.	.
TALL014	PLEKHM1P	PLEKHM1P	-/.	-/.	17:64818379	17:64820276	intron	exon	duplication	upstream	downstream	1	1	1	9	9	medium	.	.	.	.	.	.	.
TALL014	JARID2	PTP4A1	+/+	+/+	6:15246584	6:63576436	splice-site	splice-site	deletion	downstream	upstream	0	1	2	226	632	medium	.	.	mismatches(1)	CCACCACCAACAACAATAAAAACCACCAGGATATTTTTTTGCAAATTTCTGACGGCTTTAAATTCATGAAGCAATTGTCCCCTTTTGCAATCAGCATTTGGATCTCAGAATGAGCAAGGAAAGACCCAAGAGGAATATCATTCAGAAGAAATAC|CAATTCTGTGGTGTTCTTGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGAGATTACTGCCAGGCACAGCACGACCTCTATGCAGACAAGTGAAC...ACTGCTCCACCAAGAAGCCCCCATAAGAGTGGTTATCCTGGACACAGAAGTGTTGAATTGAAATCCACAGAGCATTTTACAAGAGTTCTGACCTGGATGGGGTAAACCTCAGTGCACTTCTTTTCTGTTGGCCTCAGTATTACTGGATTGAAGAATTGCTGCTTCTTGTTAGGAG...TTCTTTGCATCATTTCTGTATTCAATTTTTTTAATTATTTCATAACCCTATTGAGTGTTTTTTAACTAAATTAACATGGCTCGAATGAACCGCCCAGCTCCTtTGcAAaTaACATACAAG	out-of-frame	MSKERPKRNIIQKKY|qfcgvlghtfmeflkgsgdycqaqhdlyadk*	.
TALL014	AIM1	AIM1	+/+	+/+	6:106569321	6:106559999	3'UTR	intron	duplication	downstream	upstream	1	1	1	149	24	medium	.	.	duplicates(1)	AGGTATTCACACATTTAAGGAACTCTAAACAAAATACTATTTTCCTTTAGTTCATATTAAAAATTAATACATTTTAAAAATTTAATGTCAAAGTCTGGTAACATTTGTTAGTAGGATTTGAGTTATTATTTTTTGAGACAGGATCTCAGGCTGGAGTGCAGTGGCACAATCACGGCTCACTGCAGCCTCTACCTCCCCAGGCTCAG|GTGGGAGATCACTTGAGTCTGGGAGGTTGAGGCTGCAGTGAGCTGTGATCGTGCCACTGCCCTTCAGCCTGGGCAACAGAGTGAGACCTACCTGGAAAAAAAAATTATAGAATATTAGGGTGGTAGAATTATGGGTGATTTTTTTGCAGTAGGTTTTAATATTTTGTTTTTATGATAAGATGACTAAAATGATAAAATTTTATCCAGGATTTAAGTTCCAGGATTAAAAGTAGAGTGCAT	.	.	.
TALL014	SYNCRIP	PNRC1	-/-	+/+	6:85642797	6:89083753	splice-site	splice-site	inversion	upstream	upstream	0	3	0	231	846	medium	.	.	.	CCACTCGCGCCGGACACAGGGAGCAGCGAGCACGCGTTTCCCGCAACCCGATACCATCGGACAGGATTTCTCCGCCTCAGCCCAACGGGGAG|GTTTTAAAATCAAAGATGGGAAAATCGGAGAAAATTGCCCTTCCCCATGGCCAGCT...GTATGAGCAACCAAAGATAAACAGACAGAAAAGCAAATATAACTTGCCACTAACCAAGATCACCTCTGCAAAAAGAAATGAAAACAACTTTTGGCAGGATTCTGTTTCATCTGACAGAATTCAGAAGCAGGAAAAAAAGCCTTTTAAAAATACCGAGAACATTAAAAATTCGCATTTGAAGAAATCAGCATTTCTAACTGAAGTGAGCCAAAAGGAAAATTATGCTGGGGCAAAGTTTA	.	.	.
TALL014	RP11-76E17.3	ZNF595	+/+	+/+	15:93865648	4:85731	splice-site	splice-site	translocation	downstream	upstream	0	2	0	32	58	medium	.	.	.	CACAAGAATCCAAGTCATCCTCTGTTGCCTTTAAG|CTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTATACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGCTGTAAACGTGTGAATGAGTGTAAGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACT	.	.	.
TALL014	GMDS-AS1	KLHL13	+/+	-/-	6:2263684	X:117945575	splice-site	splice-site	translocation	downstream	downstream	0	2	0	69	65	medium	.	.	.	GATGGACTACCTTAATTGATTTTTGAATGTTGAGCCAGCCTTATGCATGTGGGATAAACCCCTGTTGATCATG|ATCTCTCGTGGAAGAGGAAGACCAACACATGAAATTGTCCCTTGGAGGCAGCGAAATGGGCCTCTCATCCCATTTGCAGTCTTCCAAGGCAGGACCTACACGCATCTTTACCAGCAATACCCACAGTTCTGT	.	.	.
TALL014	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	29	0	94	53	low	.	.	duplicates(1),low_entropy(1),mismatches(6)	GTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCACgTTCCTGAGCCACCC	.	.	.
TALL014	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	97	53	low	.	.	.	CCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCC	out-of-frame	LNMQAAQPKGNPVAAPT|gmsrgqfgqgqepldmffwvneisgeityppqkadapavspes	.
TALL014	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	1	6	3	11	12	low	.	.	duplicates(1),low_entropy(2)	AGTAGCAATCTATATTTTAAGAAGAGATTACTGTAATTTCTTTCAGAAG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCTCTCTTCTTATGGCTCTGGACACACTGCTGAACTCTGACAGTACAAAGGAAATG___GGTTTTACGTGCAAGATCCAGGCTCTGCGTGATAAGCTGTGGATCTTCCTGGTTCAGTCTTTCTATGCTGTTCGTCACACAGAAAGCTGGAAGCTGATGAGCACAGATGATCAACAGAAAATCCAAGCAG___CTGCATTTGACAAAGGTGATGATCG	in-frame	VAIYILRRDYCNFFQKPVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEENITTENSCSLLMALDTLLNSDSTKEMGFTCKIQALRDKLWIFLVQSFYAVRHTESWKLMSTDDQQKIQAAAFDKGDD	.
TALL014	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	6	2	116	294	low	.	.	low_entropy(1)	CCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGT...___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL014	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	3	2	15	10	low	.	.	duplicates(1)	AAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAA	.	.	.
TALL014	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	5	0	0	443	40	low	.	.	low_entropy(1),mismappers(1),mismatches(3)	CCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGT...GGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGAAA	.	.	.
TALL014	CENPK	CTD-2116N20.1(14694),CENPK(16024)	-/-	./-	5:65528518	5:65501742	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	5	170	13	low	.	.	duplicates(1),mismatches(1)	GGAATCTCTTAATGTACTACACAGTGAATTGAAAAATAAGGTTGAAACATTTTCTGAATCAAG___AATCTTTAATGAACTGAAAACTAAAATGCTTAATATAAAAGAATATAAGGAGAAACTCTTG...|...GCACTTCTGTTTCCCTACCCTGGGTGTCAAAAAGCCTGAGCAGAGAACGTGGACTTTCACCACTACCTGGTAGTGATGAGACTGTGCCCCATTTCCCCTCCACCAGAATTGTGTCAAAGGTG	.	.	.
TALL014	PTGER4(3028),TTC33(17712)	TTC33	./.	-/.	5:40696763	5:40740484	intergenic	intron	deletion/read-through	downstream	upstream	0	4	0	28	12	low	.	.	mismatches(1)	.	.	.	.
TALL014	IKBKG	CTAG1A	+/+	+/+	X:154564020	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	3	199	5	low	.	.	low_entropy(1),mismatches(1)	GGAGAAGCTGGCCGAGAAGAAGGAGCTCCTGCAGGAGCAGCTGGAGCAGCTGCAGAGGGAGTACAGCAAACTGAAGGCCAGCTGTCAGGAGTCGGCCAG___GATCGAGGACATGAGGAAGCGGCATGTCGAGGTCTCCCAGGCCCCCTTGCCCCCCGCCCCTG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTCATTGTGGGGGCCTGATTGTTTGTCG	out-of-frame	EKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRHVEVSQAPLPPAP|ad*	.
TALL014	CTD-2555O16.4	MTHFD1	-/-	+/-	14:64441699	14:64448933	exon	intron	duplication/5'-5'	upstream	downstream	0	1	3	9	12	low	.	.	mismappers(2)	AATATAAAGTCATCTCTTTTATTTCAGTAACGTCCCAGTCACAGGTGTGAGGAAGAATGAGAAGAAAGAGATGAGCAAGTGGAGAAGGTCTTGACTACCCAGGTTAAGTGTGCTTAATTTTTTTTTTTTTTTTTTGACACGGAGTCTCGCTCTGTCGCCCAGTCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTGCCTCAACCTTCC|CAGCTACTAGGGAGGCTGAGGC...TGCAGCGAGTGGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGACAGACTTCGTCCCCCAAAAAAAAAAAAAGATTTTTTGCTTCCCATTCTACTACGGTGAGGCCATTATAACAAAACCCTGACCACCAATGCAATACCTAAACAACCCACACAAGT	.	.	.
TALL014	C5orf56	RAD50	+/+	+/+	5:132449689	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	1	487	109	low	.	.	mismatches(1)	CCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAGATTCGTCTGCAATTTCGTGATGTCAATGGAGAACTTATAGCTGTGCAAAGATCTATGGTGTGTACTCAGAAAAGCAAAAAGACAGAATTTAAAACTCTGGAAGGAGTCATTACTAGAACAAA___GCATGGTGAAAAGGTCAGTCTGAG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|dhh*	.
TALL014	C5orf56	RAD50	+/+	+/+	5:132419940	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	375	109	low	.	.	duplicates(1),low_entropy(1)	CTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAGATTCGTCTGCAATTTCGTGATGTCAATGGAGAACTTATAGCTGTGCAAAGATCTATGGTGTGTACTCAGAAAAGCAAAAAGACAGAATTTAAAACTCTGGAAGGAGTCATTACTAGAACAAA___GCATGGTGAA	in-frame	MDSLAAGELNASHQPW|TIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKKTEFKTLEGVITRTKHG	.
TALL014	EEF1A1P6	DNAH11	-/-	+/-	7:22511241	7:21859197	exon	intron	deletion/5'-5'	upstream	downstream	0	0	4	422	3	low	.	.	low_entropy(1),mismappers(1),mismatches(3)	AGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCT...|...AGATTGCAGTGAGCCGAGATT	.	.	.
TALL014	ARAP2	RNU6-573P(374423),ARAP2(77795)	-/-	./-	4:35967906	4:35870426	exon	intergenic	deletion/read-through	upstream	downstream	0	0	4	5	8	low	.	.	.	TCAGGCTCAAGGGGTCCTCCCACCTCAGCCTTCCTAGTAGCTtGGACCACAGGTGTATGCCACCACACCCAG___GAATGGTGATGGTATTCTTTTATCCACTTTGAGAGAAACTTTGAGAATGTG...|...CAGATTACTTACTAATGGATGTAATTCCTGACACTTAGCTGGAGAAAAATTGCTTTATTGGGCCAGATAAACTTGCCAG___GATTGAGGCCATCAAGCTACAGATGGTCGTACAAATGGA	.	.	.
TALL014	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	132	144	low	.	.	mismatches(1)	CCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACC...GTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAAT	.	.	.
TALL014	IPPKP1(10925),FAS-AS1(10975)	SAP18	./+	+/+	13:21115296	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	2	48	1286	low	.	.	.	CTTCTCTCCAGGACGCTCTTCTGCGGTTACTGAAAAAGGGAGTCTACATGAATTAATAAGTGAAG___AAATCAACATTCTGTTAGCCAGGAAGAAGGCCCTCACCAAGAACTCCAGCCATGCTGACATCCTGATCTCTGACTTTCAGGTTCCAGACCT|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTT...TCAGGGCGCATGAGACCATATTAAATTCTATTTACTATTTGTTGAATTTATTTTTCCGTCAGTTATGTAAAATAAACATACTCTTCTTCCTCCCCTGATTATTGCCATTAAGCCTTTAAATTC	.	.	.
TALL014	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	1	68	8	low	.	.	mismatches(1)	GGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATG	out-of-frame	GNSSLAPANGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL014	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	1	0	83	18	low	.	.	mismappers(6)	ATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCG...AGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG...AGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGA	out-of-frame	AHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL014	GAS2	RP11-17A1.3	+/+	+/+	11:22775348	11:22834907	intron	splice-site	deletion/read-through	downstream	upstream	0	1	2	148	15	low	.	.	low_entropy(1),mismappers(2),mismatches(2)	ACAGAGCCAGCTCATGGAGAGCTACCTGTATGATGAGAGCTTTGGCTTTCTCCTGAAGGCAATAAGAAGATTCTAAATAATTTTTAGACGAGGAGAAACATGAGTAGATTGCATTTTAAATCATTCAGGCTGTAGTGCAGATAATGAATTGAAAAGGTATAAAGTTGGAGGACGAGCATTCCACCGTTTTGGCTTGGAGAGTGTGGAGGTCAAGAGGGTGGCAGCTCATTCTGGGGACCTACCTCTTGAAATTCCAG|AGTTCCACTCTTTTTGTCGACAATAATATGGCGCCCAAACACGTGGGGCCTCAGAGAAGACTCTGGATCCGGAAGGAGTATCCCAAAACCAGAGCTAAGGTACCAGCTGGAGCCCACTGAAGCCTCACCGAGTTTGGGCTTCTCCTCCTGTGGAACTG___GAAACCAAAATCATGGTATTTTGAAAACCAGAGGTATGAATCTCCCTCGTTTGGCATCCCACTGGGCCTGGACCTGTTTCACTGCTAATGTTCTGCTGCCAAAACTATACAAGCTGCCTGGACTATTGCAGAAGAG___AGACAGAGTCTTGCTCTGTTGCCCAGAATGGAATGCAGTAGCACAATCCTAAC	.	.	.
TALL014	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	2	1	58	3	low	.	.	.	GGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAAC	out-of-frame	KDGPLDMRMDGGRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL014	PFKFB3	RP11-563J2.2	+/+	+/+	10:6232895	10:6319205	CDS	intron	deletion/read-through	downstream	upstream	0	0	3	13	2	low	.	.	.	CGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA___A...|...GCACTCCTATGTTCATTGTGGCACTATTCACAATAGCAAAGATAAGAAATTAAACTAAGTGTCCATCAGTGGATGACTGGTTAAAGAATATTTGGTACATATACACAaTGGAATAGTACTCAGC	.	.	.
TALL014	SAMD9L	SAMD9	-/-	-/-	7:93131381	7:93118071	CDS	5'UTR	deletion/read-through	upstream	downstream	1	0	2	184	4	low	.	.	mismappers(1)	ACTTTGATAAAGCACAAAATACAAATTCCCTCTGGCACAGTGGGGATGTGTGGAAAAAAAATGAAGTCAAAGACCTCCTGCGTCGTCTAACTGGTCAGGCTGAAG|TTGTTAAACACGCCCTGCTGTTTCTGAGCCAATTAGAGCTTGCTGTGAGACAGAAGCAGAGAATACATAGACTTCCG	out-of-frame	FDKAQNTNSLWHSGDVWKKNEVKDLLRRLTGQAE|vvkhallflsqlelavrqkqrihrl	.
TALL014	EEF1A1P6	FAM126A	-/.	-/.	7:22511363	7:22928083	exon	intron	deletion	downstream	upstream	0	0	3	517	2	low	.	.	mismatches(6)	.	.	.	.
TALL014	CLNS1A	RP11-739B23.1	-/-	+/-	11:77524456	11:77474669	intron	exon	deletion/read-through/5'-5'	upstream	downstream	0	1	2	4	8	low	.	.	.	GCTTGCTCAAAGAAAGTTTCTCAAAGAAGATGGCATGTAAGATGAAACTTGAAGAATGAAACTGGTGAGGGAGAAAGGCGGTCCAG|AAAGAAAACATAATACATGTCTGGCTGTGAGATCACACGACATCGGATAGTTTTCAAATTCAGCCCTTGACAACGAGCTCATAGATGCGGTGGTGCTTTGTTAACCTGAAAAGGAC...CCATCCTGACTACTACAGTAGCCCTCCCAGAAATCGTCCCAAAATTGTCTGATAGAAAGGCTGCACGGAAACAACCCGCCACGGACAGCGGACCGAGAACAGTGACGCGACGCGATGACGTCACGCAGCAAGCGGGTGATTCCCCAGCCTCTGGCGTCACGCGCCGATGAC	.	.	.
TALL014	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	1	0	18	17	low	.	.	mismappers(2)	CAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACATTCTCTTCTGCACAAGTTGCCTTTGT	out-of-frame	KNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTFNILFCTSCL	.
TALL014	PLXNA4	CHCHD3	-/.	-/.	7:132564891	7:133035164	intron	intron	deletion	downstream	upstream	0	0	2	1	1731	low	.	.	mismappers(3),mismatches(2)	.	.	.	.
TALL014	OAS3	RP11-177C12.1(712),TBC1D1(20397)	+/+	./+	12:112950836	4:37870690	CDS	intergenic	translocation	downstream	upstream	0	0	2	21	16	low	.	.	.	CACAGACCTAAGGGATGGCTGTGATGTTGAACTCATCATCTTCCTCAACTGCTTCACGGACTACAAGGACCAGGGGCCCCGCCGCGCAGAGATCCTTGATGAGATGCGAGCGCAGCTAGAATCC...|...CACCCTACTTTGCTATCAAACACTGGAACTTATTCTCTCTATCTAACTGTATGTTTGTGAAGTTAACCAACCTCTTTTGGTCCTCCACTGCCCCCACGCTTTCCAGCTTCTGGTGTCTCTCATTCT	.	.	.
TALL014	EEF1A1P13	TRIO	-/-	+/-	5:14652269	5:14457712	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	94	1	low	.	.	mismappers(2),mismatches(3)	CAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAAT...|...GATCCAGCGGCC	.	.	.
TALL014	RP11-764K9.1	LINC01410(4964),RP11-262H14.5(19298)	-/-	./-	9:63809299	9:62818450	intron	intergenic	deletion	upstream	downstream	0	0	2	1	10	low	.	.	.	CTTCTGCATATGGCTAGCCAGTTATCCCAGCACCATTTATTGAATAGGGAATCTTTTCCCCATTGATTGTTTTTGCCAgCTTTGTgAAAGATTACcTAGTTGTAG___GCTTTGGTATCAGGATGATT...|...ATAAAAAATGATGAGTTCATGTCCTTTGCAGGGACATGCAGGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAAGACAAAAAACCAAACACCCGCATGTTCTCACTTATAGGTGGGAATTGAACAATGAGAACACGTGGACACAGGAAGGGGAACATCACAC	.	.	.
TALL014	RP3-323P24.3	FAAH2	+/+	+/+	X:57127060	X:57310670	exon	CDS	deletion/read-through	downstream	upstream	0	0	2	9	9	low	.	.	mismappers(2)	AGAAGAGAGAATATGAATACTCCGTGCACTTTGATCTTATCGTTTAGCTGCTGATCATACCATCCCTGGAGTCCTACTTCTGACTCCAAGTTATGAGGT...|...AAAATAAATGGCCCTTCCTTGGGGTTCCTTTGACAGTCAAGGAAGCTTTCCAGCTACAAG___GAATGCCCAATTCTTCTGGACTCATGAACCGTCGTGATGCCATTGCCAAAACAGATGCCACTGT	.	.	.
TALL014	LRFN3	RP11-799O21.2(80861),RP11-393K12.2(95819)	+/+	./-	19:35939594	10:7001333	CDS	intergenic	translocation	downstream	downstream	0	0	2	11	4	low	.	.	duplicates(1)	GCCTCATCCCCACCCCAGTCAGCCACACCCAGCCCATGTCCCCGCCGCTGCCGCTGCCAGACACAGTCGCTGCCCCTAAGCGTGCTGTGCCCAGGGGCAGGCCTCCTGTTCGTGCCACCCTCGC...|...GGGGCCACTTCTGATGCATCTTATCCCTCACAAGCAAGTCGCTAGATTGATCCCTATTCAGGGAGAGGGAAATTAGACTCTACCTTCTGTGGGAAGAGTGCCAAAGGACTTGCAGACAATTTAAC	.	.	.
TALL014	OTUD7B	C10orf88	-/.	-/.	1:149944953	10:122941087	CDS	intron	translocation	downstream	upstream	0	0	2	8	4	low	.	.	.	.	.	.	.
TALL014	HCG11	ZNF570	+/+	+/-	6:26523705	19:37479101	exon	intron	translocation/5'-5'	downstream	downstream	0	0	2	90	7	low	.	.	.	AGTTGAATTGTGAAGCCACCTTTGTGAGCAGTATATTACTGTCTATACTTGCTCAATGGTTTAGAGGAGGTGGGAGGGAAGAAATTGCAAAAGATAATATGCTAGTGTGTTCATACTTGGACATTT...|...AAAATTCCAAGCCAAAATGAACAAAGTTCTACCAAACATTCAAAAAACAAATAATTTTTATTTTACACAAATGTTTCTAAAGAAGAAAAAGAGAATTTACGAGACTAATCAACCTTGATTCCGA	.	.	.
TALL014	GNPTAB	MYBPC1	-/-	+/-	12:101747644	12:101640165	intron	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	21	1	low	.	.	mismappers(2)	ATACCTGCCACCTTCACAAACAAAGCAGCCAATGCTGCCTCTTCCTCCCCTCCCAAATTCCAGCTCATCATTCAAACCGTGGTGTCTTATGTTTGGGCAAAGCCCTGCCTCCTCCTACAGATGAAGGAATAAGCCA...|...GTGGCtCATGCCTGTCATCCCAG	.	.	.
TALL014	IL1RAP	RAD51C	+/.	+/.	3:190648184	17:58734203	intron	CDS	translocation	downstream	upstream	0	0	2	22	26	low	.	.	.	.	.	.	.
TALL014	RPS26P11(35374),RGAG4(46844)	NHSL2	./+	+/+	X:72080266	X:72138441	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	5	23	low	.	.	duplicates(2),mismatches(1)	AGGAAACTCACTTTTGAATCCTCAGTTGCTTTCCCTAGGCTGGGCTGCCCAGGAACAACTTCAATGGGCAAAGGAGTATGTGATCGATGGGACCAAGGTGCTGGGAAACGGGGTTCAGGAAAGTC...ACCCACTGAGGAGCCTAGGGACAGGGTTTGGGACAGTGTGGAGCCCGTCGGCTCCCTGCCCCCAGTGTGGGCTCAGCACACACTTTTCTCATGTGGATTCTTGGTTATCCACACCGCTGGGATGGAGAGAACTGACTCTGTCACCCTCTTCTGGATCCGGGGAG|GTCACAGCAACAGCCCAGCAGGCAGTGTGGCCCACTCTACCACCTCCGACATCAGGCCCAGTCACTCAG	.	.	.
TALL014	ZNF273	CCDC65	+/.	+/.	7:64927813	12:48930706	CDS	intron	translocation	upstream	downstream	0	0	2	49	54	low	.	.	.	.	.	.	.
TALL014	DSCAM	HMGN1	-/-	-/-	21:40021292	21:39348309	intron	CDS	deletion	upstream	downstream	0	0	2	0	2391	low	.	.	mismappers(2),mismatches(1)	CCCCTTTTCCCTT...|...AAAAAGGCAGgAGCGAAG___GATAAATCTTCAGACAAAAAAGTGCAAACAAAAGGGAAAAGGGGAGCAAAGGGAAAAC	.	.	.
TALL014	SAMD14	PHIP	-/-	-/-	17:50110354	6:78937122	3'UTR	3'UTR	translocation	upstream	downstream	0	0	2	110	28	low	.	.	.	GGGACATCCACTTGGAAGGCCTGTGCTGTGGAGGGTGCTGAGGGGGACCCAGTACCCCTGGCAGAAAAGTGACAGCCCTGGTCTCAGAGAGGAGGACTGCCATGGGAAAATGTCTCTGGGACAC...|...AAAGGACTGTAAGTGTTCTGCTTATATGCAGGAGTTACATGATTTTAAAAGTCATAATAGGGGAAGTAGTTTTATCATCTGATTACTCCTATTAACCTAAAAAGTATTTCTAACATAACAGAT	.	.	.
TALL014	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511769	7:23330595	exon	intron	deletion	downstream	upstream	0	0	2	1828	0	low	.	.	mismappers(1),mismatches(19)	.	.	.	.
TALL014	KLHL23	RIPK3	+/.	-/.	2:169708652	14:24338747	intron	exon	translocation	downstream	downstream	0	0	2	17	22	low	.	.	.	.	.	.	.
TALL014	MAN2C1	PPCDC	-/-	+/-	15:75358189	15:75060172	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	603	1	low	.	.	mismappers(1),mismatches(1)	TGGAGTTCCCTGCTCGCGTGCGGAGTTCCCAGGCCACCTATGAGATCCAGTTTGGGCACCTGCAGCGACCTACCCACTACAATACCTCTTGGGACTGGGCTCGATTTGAGGTCTGACATGGC...|...CCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAcCCACCGtGCCCAGCC	.	.	.
TALL014	BTBD3	ZNF528-AS1	+/+	-/+	20:11918114	19:52392209	5'UTR	intron	translocation/5'-5'	downstream	upstream	0	0	2	24	11	low	.	.	.	TTTGCAGTGTAGCATTTTCAGGTGATCTAGGAAACAGTTATTTTTATGAGCAAATAAGAGAAACAGGAATCATGATGGGGATATATTTAACAGACCCAGTACTGGATAAAACTTAAAGCCAGTT...|...TCCTAATAAATTAATGGAAACAGAAGTATGTTTTGGAAACCATGGACTGACTTTCTTTCTCTTTCTCTCTTTCCTTCCTCCCTTTCTCTCTCTCTTTCTTTTCTTTCACTTTGACGGAGCCTCG	.	.	.
TALL014	TXNDC15	PDE4D	+/+	-/-	5:134874483	5:59038971	splice-site	splice-site	inversion	downstream	downstream	0	2	0	37	121	low	.	.	.	TGCCTCTCtGCCTGGGCAATGGTCtCGGCTGCCGGTCGACGACCGCCCCGCGTCATGCGGCTCCTCGGCTGGTG|AGGAGGCCTACCAGAAACTGGCCAGCGAGACCCTGGAGGAGCTGGAC...GATCAGTGGAGTCAAGAAATTGATGCACAGCTCTAGTCTGACTAATTCAAGTATCCCAAGGTTTGGAGTTAAAACTGAACAAGAAGATGTCCTTGCCAAG___GAACTAGAAGATGTGAACAAATGGG	out-of-frame	MVsAAGRRPPRVMRLLGW*|gglpetgqrdpggag	.
TALL014	FAM76A	ACSL3	+/+	+/+	1:27726161	2:222916319	splice-site	splice-site	translocation	downstream	upstream	0	2	0	43	134	low	.	.	.	CAGCGCTTCCCCTTCGAGGCGCTGTCTCAGGGGCAGCAGCTGTGCAAG|GTTATTCTTGGACAGTATAATTGGCTTTCCTATGAAGATGTCTTTGTTCGAGCCTTTAATTTTGGAAATGGATTACAGATGTTGGGTCAGAAACCAAAGACCAACATCGCCATCTTCTGTGAGACCAGGGCCGAGTGGATGATAGCTGCACAGGCGTGTTTTATGT	in-frame	QRFPFEALSQGQQLCK|VILGQYNWLSYEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFM	.
TALL014	CLPX	NEDD4	-/-	-/-	15:65178934	15:55834286	splice-site	splice-site	deletion	upstream	downstream	0	2	0	242	88	low	.	.	.	AAGAAATCAGGCTCTGGGAATTCTGGGAAAGGTGGAAACCAGCTGCGCTGTCCTAAATGTGGCGACTTGTGCACACATGTAGAGACCTTTGTAT|GGATTCTTTGAACTAATACCACAGGATCTCATCAAAATTTTTGATGAAAATGAACTAGAG...GTATAAAAATGGCTACAGTGCAAATCATCAGGTTATACAGTGGTTTTGGAAG___GCTGTTTTAATGATGGATTCAGAAAAAAGAATAAGATTACTTCAGTTTGTCACTGGCACATCTCGGGTGCCTATGAATGGATTTGCTGAACTATACG___GTTCAAATGGACCACAGTCATTTAC	out-of-frame	KKSGSGNSGKGGNQLRCPKCGDLCTHVETFV|wil*	.
TALL014	NDUFA4	KBTBD2	-/-	-/-	7:10940016	7:32875157	splice-site	splice-site	duplication	upstream	downstream	0	2	0	2154	324	low	.	.	.	GTCGGTTCTCTCCTTTCCAGTCGGAGACCTCTGCCGCAAACATGCTCCGCCAGATCATCGGTCAGGCCAAGAAGCATCCGAGC|GGCCATGTTTATGAGTGGACTAAGTGAAAGCAAACAAACCCATGTACACCTGAGGAATGTCGATGCTGCCACCTTACAGATAATAATAACTTATGCATACACGGGTAACTTGGCAATGAAT	out-of-frame	MLRQIIGQAKKHPS|ghvyewtk*	.
TALL014	URI1	XPO1	+/+	-/-	19:30012531	2:61488271	splice-site	splice-site	translocation	downstream	downstream	2	0	0	481	736	low	.	.	.	CTCGCAAATCCATCCTGAAGTCTCGAAGTAGAGAGAATAGTGTGTGTAGCGACACTAGTGAAAGCAGTGCTGCTGAATTTGATGATAGGCGGGGAGTTTTGAGGAGTATCAGCTGCGAAGAAGCC...ATTTTGGAAGAGGAACCACAAGAAAATCAAAAGAAACTTTTGCCCTTATCAGTAACACCTGAG|GTGAAATGGTTACAAAGCAACCATTGATTAGAAGTATGCGAACTGTAAAAAGGGAAACTTTA	out-of-frame	ILEEEPQENQKKLLPLSVTPE|vkwlqsnh*	.
TALL014	CHIC2	SLAIN2	-/-	+/+	4:54048955	4:48369849	splice-site	splice-site	inversion	upstream	upstream	1	0	1	316	146	low	.	.	.	GGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTGGTCGTCCGCGGCTCCGGTCACGTCACCGT___ATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAA___GTAGCTCCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGCCTTTGTTGCTGC...GTTGCAGTATGTGGCCAGTTATTTGCCTCAGTAAAAGA|GCTGTATTCATCACCAAAGAAAAAACTTACACCAATGCAGAAATCGGTTAGTCCATTAGTTTGGTGCAGGCAAGTTTTGGATTACCC	out-of-frame	CSMWPVICLSKR|avfitkektytnaeig*	.
TALL014	MATR3	DUT	+/+	+/+	5:139293772	15:48332268	splice-site	splice-site	translocation	downstream	upstream	0	2	0	275	960	low	.	.	.	CGCCGCTTCTCGCCAGCGCCGTTGCTGCGGGGGATTGTGGGAGTCTCCGCGTCCCGCTCGCTGGGAGAGAG|AGACACCCGCCATTTCACCCAGTAAGCGGGCCCGGCCTGCGGAGGTGGGCGGC...CCGCTTTGCCCGGCTCTCCGAGCACGCCACGGCCCCCACCCGGGGCTCCGCGCGCGCCGCGGGCTACGACCTGTACAG___TGCCTATGATTACACAATACCACCTATGGAGAAAGCTGTTGTGAAA	.	.	.
TALL014	BTG3	TMEM91	-/-	+/+	21:17612699	19:41378281	splice-site	splice-site	translocation	upstream	upstream	2	0	0	228	536	low	.	.	.	CGCGCTTGGCCGCCCGACGACGCGGGAGCCGCACGCGCCGGACGAGGCTCGCTGCGCTCCCTGTTGCCCAGCGCGGGCCCGTTGAGGCGGAGCCCTCAGTTCCCGGCCAGGACACGGTCTGGGCCGCCGAATCTCCGGCCGAAGAGCGGCGGCGGCAGCGGCG|GAAACCCCTCCTGGAGTTTCCCCAAAGCCATGGACAGCCCTAGTCTTCGTG	.	.	.
TALL014	TOX	ADARB1	-/-	+/+	8:59118886	21:45225547	splice-site	splice-site	translocation	upstream	upstream	2	0	0	261	49	low	.	.	.	GTGAGAGTGAAATGGACGTAAGATTTTATCCACCTCCAGCCCAGCCCGCCGCTGCGCCCGACGCTCCCTGTCTGGGACCTTCTCCCTGCCTGGACCCCTACTATTGCAACAAG|GTACACTGAGGAGGGGACGGCTCCGTCTTCACATTGTGCACAGATCTGAGGATGGGATTAGCG	in-frame	MDVRFYPPPAQPAAAPDAPCLGPSPCLDPYYCNK|VH*	.
TALL014	RGS12	AC108004.3	+/+	-/-	4:3343053	17:404625	splice-site	splice-site	translocation	downstream	downstream	2	0	0	24	195	low	.	.	.	CATCAACTGCGGCACACTGCCCCCTCCTATGAGCAAGATCCCCGCAGACCGCTACAGGGTGGAGGGCAGCTTCGCGCAGCCCCCGCTGAATGCCCCGAAGAGGGAGTGGTCCAGGAAGGCCTTTG...GCACGTCTGCTCGGAGATCATTTGGGAGATCCAAGAGATTCAGTATCACTCGCTCCCTTGATGATCTTGAG|TCTCTGTCTCCTCACTGACCCATCCCTTCTCAGCCCACTACAGTTGTAGTTCTG	out-of-frame	TSARRSFGRSKRFSITRSLDDLE|slsph*	.
TALL014	BTG3	CTC-435M10.3	-/-	+/+	21:17612699	19:41378281	splice-site	splice-site	translocation	upstream	upstream	2	0	0	228	536	low	.	.	.	CGCGCTTGGCCGCCCGACGACGCGGGAGCCGCACGCGCCGGACGAGGCTCGCTGCGCTCCCTGTTGCCCAGCGCGGGCCCGTTGAGGCGGAGCCCTCAGTTCCCGGCCAGGACACGGTCTGGGCCGCCGAATCTCCGGCCGAAGAGCGGCGGCGGCAGCGGCG|GAAACCCCTCCTGGAGTTTCCCCAAAGCCATGGACAGCCCTAGTCTTCGTG	.	.	.
TALL014	FBRS	RP11-473M20.9	+/+	-/-	16:30668980	16:3078466	splice-site	splice-site	inversion	downstream	downstream	0	2	0	463	274	low	.	.	.	CCGGACTCCAGGCTCAGACAAGGAGCGGCCTGTGGAGCGGAGGGAGCCCTCCATCACCAAGGAGGAGAAGGACAGG|AGATGCTGAGGAAGAGACTCCGGGAGGATCCCGAGGACGcCCCAGTTGC...GAGACTGACGCTGAGGAGGACCCCAACTGTCACGAGCAACACCTGTCGAACACAGCCACCCACCTGGGGACAGATCAAGAAGCTGTCACAGATGGCAGAAGAAAACCTGAGGAAAGCGGGACAA	out-of-frame	RTPGSDKERPVERREPSITKEEKDr|rc*	.
TALL014	SSBP3	ZBTB1	-/-	+/+	1:54239129	14:64516600	splice-site	splice-site	translocation	upstream	upstream	0	1	1	771	194	low	.	.	.	CAGATTCAACAAATTCCAGTGACAACATCTACACAATGATTAATCCAGTGCCGCCTGGAGGCAGCCGGTCCAAC|CATGATGCCTTCTTCTGTAGAGTGGGCGCTTTGCAGAATACGTGTTGAATGAAATCACTGATCTAGGAAAAGTAAAAATTCCTCAAATGAATACAGAATACTTGTGCTACTGCTGATGATCAACACTTTATACAGTGCCTGGTATACCAAAG___GTCTCTAATT	out-of-frame	DSTNSSDNIYTMINPVPPGGSRSN|hdaffcrvgalqntc*	.
TALL014	PRKX	P2RY8	-/-	-/-	X:3670179	X:1466582	splice-site	splice-site	deletion	upstream	downstream	0	1	1	12	297	low	.	.	.	CCAGTGCATTCAGACACTTGGCATTCCCTGTACATAACACGAGAGAGCACGCCGGGTCTGGCCAGCCCCATGGATAAGATGCTGGAGGGTGTCCAACGTTGCATGCTGAGGAGCATGTCTT...CTAGATCCTCTGTGAAGAATGAATTTCATCCTCCCAGCTGTGCAGCTTCTCTTCTAAAT|AGCCCGGGCGAGGACCCCTCCAGGATGCAGGTCCCGAACAGCACCGGCCCGGACAACGCGACGCTGCAGATGCTGCGGAACCCGGCGATCGCGGTGGCCCTGCCCGTGGTGTACTCGCTGGTGGCGGCGGTCAGCATCCCGGGCAACCTCTTCTCTCTGTGGGTGCTGTGCCGGCGCATGGGGCCCAGATCCCCGTCGGTCATCTTCATGATCAACCTGAGCGTCACGGACCTGATGCTGGCCAGCGTGTTGC	.	.	.
TALL014	MSL2	NCK1	-/-	+/+	3:136194972	3:136927984	splice-site	splice-site	inversion	upstream	upstream	0	1	1	926	149	low	.	.	.	CATTGGTGTCGAAGTGTCTGCAATGAACCCCGTGAATGCTACTGCTCTCTACATTTCCGCGAGCCGCCTAGTGCTCAACTACGACCCCGGAGACCCCAAGGCGTTTACTGAGATTAACAGGCTCTTGCCTTACTTCCGACAGTCCCTTTCGTGCTGTGTTTGCG|TGCTGAAGCTGCTGAAAGATGGCAGAAGAAGTGGTGGTAGTAGCCAAATTTGATTATGTGGCCCAACAAGAACAAGAGTTGGACATCAAGAAGAATGAGAGATTATGGCTTCTGGATGATTCTAAGTCCTGGTGGCGAGTTCGAA...AAAACAGGTTTTGTGCCTTCTAACTATGTGGAAAGGAAAAACAGTGCTCGGAAAGCATCTATTGTGAAAAACCTAAAGGATACCTTAG___GCATTGGAAAAGTGAAAAGAAAACCTAGTGTGCCA	out-of-frame	MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVC|vlkllkdgrrsggssqi*	.
TALL014	EPAS1	SRSF7	+/+	-/-	2:46297937	2:38750194	splice-site	splice-site	inversion	downstream	downstream	2	0	0	28	1801	low	.	.	.	CTCCACCCCCGCCCCCGCACCTAGCCCGCCGCGCGCCACCTTCCACCTGACTGCGCGGGGCGCTCGGGACCTGCGCGCACCTCGGACCTTCACCACCCGCCCGGGCCGCGGGGAGCGGACGAGGGCCACAGCCCCCCACCCGCCAGGGAGCCCAGGTGCTCGGCGTCTGAACGTCTCAAAGGGCCACAGCGACAATGACAGCTGACAAGGAGAAGAAAAG|AAACCAAGGTGTATGTTGGTAACCTGGGAACTGGCGCTGGCAAAG	out-of-frame	MTADKEKKr|nqgvcw*	.
TALL014	YTHDC1	ILF2	-/-	-/-	4:68332103	1:153662556	splice-site	splice-site	translocation	upstream	downstream	0	2	0	369	2639	low	.	.	.	AAAAG___ATCAAACCAGTAAACTCAAATATGTGCTTCAAGATGCAAGATTTTTCCTCATAAAGAGTAACAACCATGAGAATGTGTCTCTTGCCAAAGCGAAG|ATCTTGCTTCTGAAATATCTACCTG...GATGGAGTGATAGTAACACCTTCAGAAAAGGCTTATGAGAAGCCACCAGAGAAGAAGGAAGGAGAGGAAGAAGAGGAGAATACAGAAGAACCACCTCAAGGAGAGGAAGAAGAAAGCATGGAAACT	out-of-frame	KDQTSKLKYVLQDARFFLIKSNNHENVSLAKAK|illlkylp	.
TALL014	SLC37A1	PTTG1IP	+/+	-/-	21:42525857	21:44851627	splice-site	splice-site	inversion	downstream	downstream	0	1	1	877	3672	low	.	.	.	AATGACTCATTTATGAAGCATCTTATTCTGCGACCGAGGCTCAGTGGTCAGTGGCGACGTAAATGGCTCGACTCCCCGCTGGCATTCGCTTCATCATCTCATTCTCCAGGGATCAGTG___GTACAGAGCCTTCATTTTTATTTTGACATTTCTGCTGTATGCAAGTTTTCACTTATCTCGAAAGCCTATCAGCATAGTTAAG|GCCTGTTTAAAGAAGAAAACCCGTATGCTAGATTTGAAAACAACT...GCCAGCCTTCCAGGACAGGCGGCCGGAGAGCTGCCCCTGAAGGACAGTCCTCTCGTCTTGCAGACTGGTGACCTTCTATTCCCTGTTCATCTCTGTTTCTAGATTTAGTCACTTGAAATAAGAAATCTTTGGGGTTTG	in-frame	MARLPAGIRFIISFSRDQWYRAFIFILTFLLYASFHLSRKPISIVK|ACLKKKTRMLDLKT	.
TALL014	SBNO1	SETD8	-/-	+/+	12:123364701	12:123390630	splice-site	splice-site	inversion	upstream	upstream	0	2	0	49	163	low	.	.	.	CAAACTCACACCTCCCGGGAGGAGCTGTGCTGGCGCCGGGTCCCGCGGGGAAA|GAGAACGTATTTACCGGGCAGTCAAAGATCTATTCCTACATGAGCCCGAACAAATGCTCTGGAATGCGTTTCCCCCTTCAGGAAGAGAACTCAGTTACACATCACGAAGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGAAACGAGAAG___AGAAAAGAAATGCTGGGAACGCAGTACGGAGCGCCATGAAGTCCGAGGAACAGAAGATCAAAGACGCCAGGAAAGGTCCCCTGGTACCTTTTCCAAACC	.	.	.
TALL014	LINC01089	NOC4L	-/-	+/+	12:121801707	12:132151258	splice-site	splice-site	inversion	upstream	upstream	0	1	0	203	183	low	.	.	.	CAACCCTGGAAAGTTTGCAGAAGTGGAAGGAGCAGAACGTGAGGGTGTAACTTACAAAAAG|GGAGTACCCTGACTTCTACCGGAAGCTCTACGGCCTCTTGGACCCCTCTGTCTTTCACGTCAAGTACCGCGCCCGCTTCTTCCACCTGGCTGACCTCTTCCTGTCCTCCTCGTGAGTACCAGGGCACCTGGCTCTGCCCTGCTCTGTGCGGCTGCAGCCTGG	.	.	.
TALL014	LINC00921	KCTD5	+/+	+/+	16:3263883	16:2697906	splice-site	splice-site	duplication	downstream	upstream	0	1	0	32	105	low	.	.	.	ACGAGATTCAAATATCTGGTGGCCGTGTGAC|GAGTGTTGGAGGAAGCAGAATTTTACAATATCACCTCATTAATAAAACTTGTAAAGGACAAAATTAGAGAACGAGACAGCAAAACATCGCAG___GT...ACGGTACGGCCAGCGAGCCCAGCGAGAAGGCCAAG___ATTTTGCAAGAACGAGGCTCAAGGATGTGAGGGACACAGTATTGACAGCTGAAGAAATGATTTACGTTTTCCCGAGATGTAATGAACTGC	.	.	.
TALL014	LINC00921	KCTD5	+/+	+/+	16:3263883	16:2707298	splice-site	splice-site	duplication	downstream	upstream	0	1	0	32	171	low	.	.	.	CTTGTTTATGAGCCTGGAAGCCACGAAGTGGTGGGAAATACGAGATTCAAATATCTGGTGGCCGTGTGAC|ATTTTGCAAGAACGAGGCTCAAGGATGTGAGGGACACAGTATTGACAGCTGAAGAAATGATTTACGTTTTCCCGAGATGTAATGAACTGCCATGTCCAGGAAGCTTGGCTGTGAGAAG	.	.	.
TALL014	PPP2R3B	LINC01089	-/-	-/-	X:345516	12:121796242	splice-site	splice-site	translocation	upstream	downstream	1	0	0	247	206	low	.	.	.	GCAG___AATGTGGCGCTGCTGGAGGAGGAGGCGGACATCAACCAGCTGACCGAATTCTTCTCGTACGAGCATTTCTACGTCATCTACTGCAAGTTCTGGGAGCTGGACACGGACCACGACCTGCTC...GCGGACGACCTGGCGCGGCACAATGACCACG|GAATTCCTGGTGACTGGAAGGGGGAGTGACTCAGGCCCTCAACCTCTAGCAG___AGTGCCTTGGCTCCCTCCTGTCGTCCTGGGGAACCTCGGC	out-of-frame	ADDLARHNDH|gipgdwkge*	.
TALL014	ZNF263	KCTD5	+/+	+/+	16:3263883	16:2707298	splice-site	splice-site	duplication	downstream	upstream	0	1	0	32	171	low	.	.	.	CTTGTTTATGAGCCTGGAAGCCACGAAGTGGTGGGAAATACGAGATTCAAATATCTGGTGGCCGTGTGAC|ATTTTGCAAGAACGAGGCTCAAGGATGTGAGGGACACAGTATTGACAGCTGAAGAAATGATTTACGTTTTCCCGAGATGTAATGAACTGCCATGTCCAGGAAGCTTGGCTGTGAGAAG	.	.	.
TALL014	ZNF263	KCTD5	+/+	+/+	16:3263883	16:2697906	splice-site	splice-site	duplication	downstream	upstream	0	1	0	32	105	low	.	.	.	ACGAGATTCAAATATCTGGTGGCCGTGTGAC|GAGTGTTGGAGGAAGCAGAATTTTACAATATCACCTCATTAATAAAACTTGTAAAGGACAAAATTAGAGAACGAGACAGCAAAACATCGCAG___GT...ACGGTACGGCCAGCGAGCCCAGCGAGAAGGCCAAG___ATTTTGCAAGAACGAGGCTCAAGGATGTGAGGGACACAGTATTGACAGCTGAAGAAATGATTTACGTTTTCCCGAGATGTAATGAACTGC	.	.	.
TALL014	RHOF	NOC4L	-/-	+/+	12:121801707	12:132151258	splice-site	splice-site	inversion	upstream	upstream	0	1	0	203	183	low	.	.	.	CAACCCTGGAAAGTTTGCAGAAGTGGAAGGAGCAGAACGTGAGGGTGTAACTTACAAAAAG|GGAGTACCCTGACTTCTACCGGAAGCTCTACGGCCTCTTGGACCCCTCTGTCTTTCACGTCAAGTACCGCGCCCGCTTCTTCCACCTGGCTGACCTCTTCCTGTCCTCCTCGTGAGTACCAGGGCACCTGGCTCTGCCCTGCTCTGTGCGGCTGCAGCCTGG	.	.	.
TALL014	HDAC4	NDUFA10	-/-	-/-	2:239236593	2:239959037	splice-site	splice-site	duplication	upstream	downstream	1	0	0	50	68	low	.	.	.	CCTGGTGCTCCGCTGGGAACTGTTGGCCACTGGTGCTCTTCAGACTCCATCGGCTTCCTCGGGAGG___ATGGACTTTCTGGCCGAGACCAGCCAGTGGAGCTGCTGAATCCTGCCCGCGTGAACCACATGCCCAGCACGG|AAGCCTCAAGAAGAGGTGAGGAGATGCCCCGATTTCCTTATTTCAGAGCAGTACATGCGTTCGTCTCACGAAAGCTCTTACAACTAAAACAACAGCACCAACA	out-of-frame	wcsagncwplvlfrlhrlpreDGLSGRDQPVELLNPARVNHMPST|easrrgeemprfpyfravhafvsrkllqlkqqhq	.
TALL014	METAP1	RAP1GDS1	+/+	+/+	4:98995867	4:98441990	splice-site	splice-site	duplication	downstream	upstream	1	0	0	170	296	low	.	.	duplicates(1)	CAGCGGGCAGGCAGCATGGCGGCCGTGGAGACGCGGGTGTGCGAGACAGACGGCTGCAGCAGTGAGGCCAAGCTCCAGTGTCCCACTTGCATCAAGCTGGGCATCCAGGGCTCGTACTTCTGCTCGCAG|AATGTCTACACAAGGAAGTACAGGATTTGGCTTTTCTAGATGTCGTATCCAAACTTCGCAGTCATGAG	out-of-frame	MAAVETRVCETDGCSSEAKLQCPTCIKLGIQGSYFCSQ|nvytrkyriwlf*	.
TALL014	ERCC6L2	PTBP3	+/+	-/-	9:95897971	9:112231413	splice-site	splice-site	inversion	downstream	downstream	1	0	0	44	274	low	.	.	.	TTCATTTCTGGCTGCAGTTTTGCATAAAAAGGGAACTCGTGAGGATATTGAAAATAACATGCCAGAGTTTTTACTAAGAAGTATGAAAAAGGAACCCCTTTCTTCTACAGCAAAAAAG|CTTATCACACCACATGGGCTTTTTATCCTATTTG___GAGTCTATGGTGATGTACATCGAGTGAAGATTATGTTTAATAAGAAAGAAAATGCCTTGGTTCAGAT	in-frame	SFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKK|LITPHGLFILFGVYGDVHRVKIMFNKKENALVQ	.
TALL014	RBM26	LARS	-/-	-/-	13:79405704	5:146114311	splice-site	splice-site	translocation	upstream	downstream	0	1	0	120	714	low	.	.	.	CGCTGTGGATGGTTTCTAAAATGATCATTGAAAACTTCGAGGCACTCAAGTCCTGGCTCAGCAAGACTCTCGAGCCCAT|ACCTTTCCAAAGTGAAACTGATGAGATTTGATGATCCACTGTTGGGGCCTCGACGAGTTCCTGTCCTGGGAAAGGAGTACACCGAGAAGACCCCCATTTCTGAGCATGCTGTTTTCAATGTGGA	out-of-frame	MVSKMIIENFEALKSWLSKTLEPi|pfqsetdei*	.
TALL014	BCR	MAEA	+/+	+/+	22:23261540	4:1339074	splice-site	splice-site	translocation	downstream	upstream	0	1	0	586	276	low	.	.	duplicates(1)	ATGGGCTCTTCCCCCGCGTGCAGCAGTGGAGCCACCAGCAGCGGGTGGGCGACCTCTTCCAGAAGCTG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAGAAGTC...GTTTCTGTTTCTTGCGACCAAAGATCCGTGAGCAACGATAAATACTCTTAGGAAGAGAGAAAATAAGGTTTCATAAGTTTGTACTTGAAAACATTTGGATTGGTAGGATTTTGTAACACGTCAA	in-frame	GLFPRVQQWSHQQRVGDLFQKL|SLLSIRQDDKVVCPRTKE	.
TALL014	BCR	MAEA	+/+	+/+	22:23182239	4:1327627	splice-site	splice-site	translocation	downstream	upstream	1	0	0	432	125	low	.	.	.	CGCAGTGCCATAAGCGGCACCGGCACTGCCCGGTTGTCGTGTCCGAGGCCACCATCGTGGGCGTCCGCAAGACCGGGCAGATCTGGCCCAACGATGGCGAGGGCGCCTTCCATGGAGACGCAG|AGCTGCCTGGAGTTCAGCCTCAGAATCCAGGAGTTCATTGAACTCA	out-of-frame	QCHKRHRHCPVVVSEATIVGVRKTGQIWPNDGEGAFHGDA|elpgvqpqnpgvh*	.
TALL014	GNAQ	VPS13A	-/-	+/+	9:77922161	9:77293341	splice-site	splice-site	inversion	upstream	upstream	0	1	0	339	192	low	.	.	.	CACACTCAAGATCCCATACAAGTATGAGCACAATAAG|GCTGTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGGTTTCTTACATGGATGCAACTGCTGGTTCTGCATACACAGATATG...AGTAGTTTTTGTCACGAAATTTCTATATTCTATATTG___GCTTTTATAGATAATTTTCAGGCAGCTAAACAAGCCTTGGCTGAGGCAACTGTTCAGGCAGCTGGAATGGCTGCTACTGGTGTAAAA	in-frame	TLKIPYKYEHNK|AVYITGKEVFSFKMVSYMDATAGSAYTD	.
TALL014	GNAQ	VPS13A	-/-	+/+	9:77728514	9:77403236	splice-site	splice-site	inversion	upstream	upstream	0	1	0	385	259	low	.	.	.	CAGAACTCCTCGGTTATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCATCTAGTCGACTACTTCCCAGAATATGATG|GTCATGGAAAATGGAAGATTTGCAAA...GTATTGTTTGTAACAAAGGGAACATTTGGACAACTCACGTGTGAGTGGCAGTATAGTTTTGATGAATTTACCAAAGAGCCATTCATTGTTCATGGGAGAAGATTGCGCATTGAAGCAAAG___GAACG	out-of-frame	QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD|ghgkwkic	.
TALL014	PREX1	SMOX	-/-	+/+	20:48700753	20:4175030	splice-site	splice-site	inversion	upstream	upstream	1	0	0	336	330	low	.	.	.	GGAAGCCCTGGAGCAGCTGCAGTCCCACATCGAAGGCTGGGAG___GGTTCCAACCTCACAGACATCTGCACTCAGCTCCTCCTGCAAGGGACTTTGTTAAAGATCTCTGCGGGCAACATCCAGGA...TCGACAACCTTCTCGTCTACTGCAAGCGGAAATCCAG|GTTCCTAGAAGGTGAGCGtGGACGGTATGCAAAGTTGTGAATCCAGTGGTGACAGTGCGGATGACCCTCTCAGTCGCGGCCTACGGA	out-of-frame	DNLLVYCKRKSr|flegergryakl*	.
TALL014	ERG	TMCC1	-/-	-/-	21:38474027	3:129880559	splice-site	splice-site	translocation	upstream	downstream	0	1	0	11	111	low	.	.	.	AAGTAAACGCTCCTTAAAAGATTTACTT|GTATTAATCTCTGGAGAAGACACATCCACAGTTAGCACTTTCTTCAGATGCTGACGCTCGGTGAACAGTTGCCTTTGGTCACAAGATTTAGAAGAC...AACTTTTTGGGAAACCTTTTGGATTACAACTGTTCATCCTCACCTATGCAAAGAAAGGGAAGCTATTGCTGGGATTTTGAGGAG___ATGGTCCTAGAACAATTGGAGATTCATACGCACACAAAG	.	.	.
TALL014	PQLC1	CTDP1	-/-	+/+	18:79919184	18:79728907	splice-site	splice-site	inversion	upstream	upstream	1	0	0	88	78	low	.	.	.	AGTCAAGGTTGCCCCCAGGCGGTCCTTCCTGG___ACTTCGACCCCCACCACTTCTGGCAGTGGAGCAGCTTCTCGGACTACGTGCAGTGCGTCCTGGCCTTCACGGGCGTGGC...GACCCTGGGCTTCCTGGCTGTGCTGACCGAAGCCATGCTGGGTGTGCCCCAGCTTTACCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|AGCGGTTCCGCCACCCCAGCCGCAGATGTTTG	in-frame	TLGFLAVLTEAMLGVPQLYRNHRHQSTEGMr|AVPPPQPQMF	.
TALL014	PQLC1	CTDP1	-/-	+/+	18:79919184	18:79753652	splice-site	splice-site	inversion	upstream	upstream	0	1	0	88	160	low	.	.	.	TGGAGACCCTGGGCTTCCTGGCTGTGCTGACCGAAGCCATGCTGGGTGTGCCCCAGCTTTACCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|AGGCCACAAGAGGAAGCTGAATGA...AACGAGGAcGAGGGCAGCAGCTCCGAGGCCGACGAGATGGCCAAGGCGCTGGAGGCGGAGCTCAACGACCTCATGTGAGCGCGGGCAGCGGGCAGGGACTGAAGCCTGACCGACCTCCAGCAGC	in-frame	ETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMr|GHKRKLN	.
TALL014	RAB2A	TOX	+/+	-/-	8:60591969	8:58939544	splice-site	splice-site	inversion	downstream	downstream	0	1	0	289	334	low	.	.	.	ACTCATCTTCATGGAAACGTCTGCTAAGACTGCTTCCAATGTAGAAGAG|TCCTACCCTGGTCCAAGCCTGGAAAGTGAAGACTTCAACATTCCACCAATTACTCCTCCTTCCCTCCCAGACCACT...ATGAACCATAATGGCCTGCTACCATTTCATCCACAAAACATGGACCTCCCTGAAATCACAGTCTCCAATATGCTGGGCCAGGATGGAACACTGCTTTCTAATTCCATTTCTGTGGTAAGAAcCTG	in-frame	LIFMETSAKTASNVEE|SYPGPSLESEDFNIPPITPPSLPDH	.
TALL014	TOX	RAB2A	-/-	+/+	8:59118886	8:60584208	splice-site	splice-site	inversion	upstream	upstream	0	1	0	261	331	low	.	.	.	CTGCGCCCGACGCTCCCTGTCTGGGACCTTCTCCCTGCCTGGACCCCTACTATTGCAACAAG|GCAGGGCAAGAATCCTTTCGTTCCATCACAAGGTCGTATTACAGAGGTGCAGCAGGAGCTTTACTAGTTTACGATATTACACG___GAGAGATACATTCAACCACTTGACAACCTGGTTAGAAGATGCCCGCCAGCATTCCAATTCCAACATGGTCATTATGCTTATTGGAAATAAAAG___TGATTTAGAA	in-frame	APDAPCLGPSPCLDPYYCNK|AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL	.
TALL014	RALGAPA2	XRN2	-/-	+/+	20:20676236	20:21326279	splice-site	splice-site	inversion	upstream	upstream	0	1	0	39	309	low	.	.	.	CTGGACTCCATCCTCTTCCTTTTTGAA|CCAAAAGAATGCAATGGTGTAAAGATTCCAGTTGATGCCAGTAAACCTAATCCAAATGATGTGGAGTTTGATAATCTGTATTTGGATATGAATGGAATCATCCATCCCTGTACTCATCCTGAAGACAA___A	in-frame	LDSILFLFE|PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPED	.
TALL014	RALGAPA2	XRN2	-/-	+/+	20:20712375	20:21381994	splice-site	splice-site	inversion	upstream	upstream	0	1	0	32	510	low	.	.	.	AGAAGGTGCTGGACCCGAAGAAGGACGTGCTGACCCGCCTGAAGCACCTGCGGGCGCTGCTGG|ATATGAGGCCCCAGGATgCCTGGCGAGGTCCTCCTCCCCTTTTCCAGCAGCAAAGGTTTGAC...CCAAACCAGTACCAGATGCTAGCTGGGCCTGGTGGGTATCCACCCAGACGAGATGATCGTGGAGGGAGACAG___GGATATCCCAGAGAAGGAAGGAAATACCCTTTGCCACCACCCTCAGGAAGA	in-frame	KVLDPKKDVLTRLKHLRALL|dMRPQDaWRGPPPLFQQQRF	.
TALL014	MGRN1	SOCS2	+/+	+/+	16:4683932	12:93572685	splice-site	splice-site	translocation	downstream	upstream	1	0	0	180	738	low	.	.	.	CCCCACTGGGTGGCGCAGAGCTGGCCCTGCGGGAAAGCAGCTCCCCTGAG___AGTTTCATAACAGAAGAGGTTGATGAGTCGTCGTCACCACAGCAAG___GGACCCGAGCAGCTTCCATTGAGAATGT...CAGCAGCCCCGAGCAtTGTGGCCGAGGCCCACCTGCTGACATCTACCTGCCAG|GCGATCAGTGGGTGACCGCGGCTGCGAGGGACTTTGTCATCCGTCCTCCAGGATCTGGGGAGAAAGAGCCCC	out-of-frame	SSPEHCGRGPPADIYLP|gdqwvtaaardfvirppgsgekep	.
TALL014	CTDP1	NFATC1	+/+	+/+	18:79683149	18:79527528	splice-site	splice-site	duplication	downstream	upstream	0	1	0	4	59	low	.	.	.	GACATCAGGGAAGAGGAACTGCCTTCAACCGTCATTGACTCTGCTCACCAGCCCAG|TAAATGAAATAATACGAAATGACCTCTCCAGCACGAGCACCCACTCCTAGTTGCCACATTGGAGCAC...AAAGACTTTTGAATAAATAAACTGAACTCACACCTGGTACCACTCAGAACCTCCAACTGACTGAATGCCAGGAGCTGAACATTAATATGTGCAAAGATTGGCTCTCCAACAAGAAGGAAAGCAG	.	.	.
TALL014	CTDP1	NFATC1	+/+	+/+	18:79680261	18:79527528	splice-site	splice-site	duplication	downstream	upstream	1	0	0	60	59	low	.	.	.	GGCCGCCGCCTCCGCGCAGTCCgCCGGGGCCTCTCAGTCCCGTGTAGCCTCCGGGGGCTGCGTGCGCCCCGCGCGGCCGGAACGCAGGCTGAGGTCGGAGCGCGCGGGCGTGGTGCGGGAGCTGTGCGCGCAGCCGGGCCAGGTGGTCGCCCCAGG|TAAATGAAATAATACGAAATGACCTCT	out-of-frame	AAASAQSaGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVVAPg|k*	.
TALL014	G3BP2	LINC01578	-/-	+/+	4:75673208	15:92885515	splice-site	splice-site	translocation	upstream	upstream	1	0	0	570	1381	low	.	.	.	GCACGTCGCAGCGCCTGGCGCCCGGGAAGAGGTGGTTGTGAGGCAGACGAACTCGCGGCTCTCCGGCTTCCGAGGCTTCCGAGTTGTCGGAGGAAGGGGGCGGCGAGCAATAAGAACCCGCCGCACCCGGTCCTCAGCGACTCTTCTGACCTCCGCGCGACGTACCCGCCGCCGCCGTTGGCTGGAG|GTGACTTAAGAGATTAAAATTAAT	.	.	.
TALL014	G3BP2	LINC01578	-/-	+/+	4:75661931	15:92897724	splice-site	splice-site	translocation	upstream	upstream	1	0	0	721	2542	low	.	.	.	CTGGAG___CATTTGACATTGTGCAGCAAAGAAATGGTTATGGAGAAGCCCAGTCCGCTGCTTGTAGGGCGGGAGTTTGTGAGGCAATATTATACTTTGCTGAATAAAGCTCCGGAATATTTACACAG|CACCCAGTCAGCTTGAAGAGTTTCAAATGGACCCTACCACTGAGAAATCAAGATGGCAGTCTACTATGGGGAATTGAG	out-of-frame	MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHs|tqsa*	.
TALL014	ZMYM2	PSPC1	+/+	-/-	13:19960026	13:19741649	splice-site	splice-site	inversion	downstream	downstream	1	0	0	198	549	low	.	.	.	CGGGACTGGACCGAGCGGAGTTGTGCGTGTCGCCGAAGGGGGGTGGGCCGGGGGAGGGGAGGTTCGTTCCGCGGAGCCgCAGCCAGAACCGG___GACCAAGAATCGCCTTCAGCCCTGTCTGGTGCATCCTTGGCAGAAAGTGAGGAGGAAAACACCCCCATT|ATCTAATGAGGCGTCAAGAAaAACTCAGACGCTTGGAAGAACTCA	.	.	.
TALL014	SLC38A2	ARL6IP6	-/-	+/+	12:46372509	2:152719898	splice-site	splice-site	translocation	upstream	upstream	0	1	0	850	17	low	.	.	.	TTTTTTATGATTTGTATTTGACTGAGAGAAACCCACTGAAGACGTCTGCGTGAGAATAGAGACCACCGAG|CGTTTAGTGGGCTACAGATGGCATGGCATCTAAAACCTTACAATGCTTGATTTT...GAGAATTTGAAAAATGAAGATGATGTAGACACTGGACTATTAG___GATTCTGGACTCTACTTATAATATCCCTAACTGCTGGATTCTCCTGTTGCAGCTTTTCTTGGACAGTGACTTACTTTGATT	.	.	.
TALL014	ARIH2	PRKAR2A	+/+	-/-	3:48927813	3:48773108	splice-site	splice-site	inversion	downstream	downstream	0	1	0	618	68	low	.	.	.	CTGAGGGTGCCCTCAATGAGCACATGACCAGCTTAGCTTCTGTCCTAAAG|GGGAACTTATGACATTTTAGTAACAAAAGATAATCAAACCCGCTCTGTTGGTCAATATGACAACCGTGGCAGTTTTGGAGAACTAGCTCTGATGTACAACACCCCGAGAGCTGaTACCATT	out-of-frame	EGALNEHMTSLASVLK|gnl*	.
TALL014	CTBP1	MAEA	-/-	+/+	4:1228199	4:1339074	splice-site	splice-site	inversion	upstream	upstream	1	0	0	517	276	low	.	.	.	GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAG	out-of-frame	VLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDL|vsafypsr*	.
TALL014	ACSF3	P2RX5	+/+	-/-	16:89093992	17:3673877	splice-site	splice-site	translocation	downstream	downstream	0	1	0	68	2779	low	.	.	.	GCGCGCGCGGCGGAGGACGAGGAAGAGTTGTGGCGAGGCAGATCCTGCCCCGTGGCCGCGGCCGTCTC|GAGCACGTGAATTGCCTCTGCTTACGTTCAGGCCCTGTCCTAAACCCAGCCGTCT...CACGTCTGATGCTGGGGTCATCAGGACGGACCCATCATGGCTGTCTTTTTGCCCCACCCCCTGCCGTCAGTTCTTCCTTTCTCCGTGGCTGGCTTCCCGCACTAGGGAACGGGTTGTAAATGGG	.	.	.
TALL014	ACSF3	P2RX5	+/+	-/-	16:89098763	17:3681978	splice-site	splice-site	translocation	downstream	downstream	0	1	0	90	2457	low	.	.	.	GCCGCTCTTGTGAACTGCGAACTTCCCCTTACCTCCTCTCTCTGGCTCGGGAGCTGG|GGTGCTTTCTTCTGCGACCTGGTACTCATCTACCTCATCAAAAAGAGAGAGTTTTACCGTGACAAGA...AGCCACCCGAGGCGAAGCGTGGAAGCAGCAGTCAGAAGGGGAACGGATCTGTGTGCCCACAGCTCCTGGAGCCCCACAG___GAGCACGTGAATTGCCTCTGCTTACGTTCAGGCCCTGTCCTAAAC	.	.	.
TALL014	MAP1LC3B	FBXO31	+/+	-/-	16:87392467	16:87360366	splice-site	splice-site	inversion	downstream	downstream	0	1	0	643	66	low	.	.	.	CGCGTCGTCGCCGCCGCCGCCGCCCAGATCCCcGCACCATGCCGTCGGAGAAGACCTTCAAGCAGCGCCGCACCTTCG|AGTATGGTGTTTGCGAAAACTTGCGGAAGCTGGAGATCACAGGCGT...ATTGTGGCAGCCAGATATCGGGCCATACGGAGGACTGCTGAACGTGGTG___GTGGACGGCCTGTTCATCATCGGGTGGATGTACCTGCCTCCCCATGACCCCCACGTCGATGACCCTATGAGATTCA	in-frame	MPSEKTFKQRRTF|eYGVCENLRKLEITG	.
TALL014	TPTE2P5	ELF1	-/-	-/-	13:40921619	13:40982282	splice-site	splice-site	duplication	upstream	downstream	0	1	0	54	604	low	.	.	.	CAGCAACATTGACTACGAGGAATGGCGGCGGCTGCCGCAGGACCTGCAGCATCCCAGAG|GCCAAGAAGCTTGAGAGAAGAAAAATTTCAGAAAAATTGTCTCAATTTGACTAGAATATCAATG...CCACAGACAGAGCTGAGGGTTTTTTACCCAAATCAGTCACTGGATTTTGCTGCCTGATACGTGAATCTTCTTGGAATTTTTCTCATGTGGATCTAAGGGGAATGCTTTATTATGGCTGCTGTTG	.	.	.
TALL014	SUGT1P3	ELF1	-/-	-/-	13:40921619	13:40982282	splice-site	splice-site	duplication	upstream	downstream	0	1	0	54	604	low	.	.	.	CAGCAACATTGACTACGAGGAATGGCGGCGGCTGCCGCAGGACCTGCAGCATCCCAGAG|GCCAAGAAGCTTGAGAGAAGAAAAATTTCAGAAAAATTGTCTCAATTTGACTAGAATATCAATG...CCACAGACAGAGCTGAGGGTTTTTTACCCAAATCAGTCACTGGATTTTGCTGCCTGATACGTGAATCTTCTTGGAATTTTTCTCATGTGGATCTAAGGGGAATGCTTTATTATGGCTGCTGTTG	.	.	.
TALL015	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	33	1	1	89	115	high	.	.	duplicates(1),mismappers(31),mismatches(1)	AAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG___...GTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGAC	.	.	.
TALL015	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	4	5	7	75	115	medium	.	.	mismappers(7)	GCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGG...CCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGAC	.	.	.
TALL015	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	5	4	174	115	medium	.	.	duplicates(1),mismappers(4),mismatches(1)	CGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAG	.	.	.
TALL015	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	5	1	21	22	high	.	.	low_entropy(1),mismatches(1)	GAGAGAGCCTTTTGATCATCTTGCGGGGCGGGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCT	.	.	.
TALL015	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	12	4	88	25	medium	.	.	low_entropy(4),mismatches(1)	GGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL015	ZNF737	ZNF737	-/.	-/.	19:20542495	19:20543896	intron	3'UTR	duplication	upstream	downstream	1	1	2	38	35	medium	.	.	.	.	.	.	.
TALL015	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	1	0	346	28	medium	.	.	mismappers(1)	CCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCC...CCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAG...AAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGG	.	.	.
TALL015	CD1B	CD1C(1408),CD1B(32913)	-/-	./-	1:158329852	1:158295038	splice-site	intergenic	deletion/read-through	upstream	downstream	5	4	0	2609	23	low	.	.	duplicates(2)	GCTACATTCTGGAGGTGCCATAGTgAGCTTCCTGAGGGGAGCTCTAGGAGGATTGGATTTCCTGAGTGTCAAGAATGCTTCATGTGTGCCTTCCCCAGA...AGGGCACAGAAATTCTGTGCACTAATCATACAATATCAAGGTATCATGGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|GTCACAGGGTGACTAAGGGTGCAGGAGAGTCACCTAGGGCCTCCTGGTGCCAAGGAAATGAGCAATGGAAGCAGGACCCAAGCTGG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCgGG	out-of-frame	RAQKFCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQRQ|ghrvtkgagespraswcqgneqwkqdpswercncpis*	.
TALL015	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	5	3	0	14	7	low	.	.	.	CGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAG	.	.	.
TALL015	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	5	0	48	17	low	.	.	duplicates(2),low_entropy(2),mismappers(1),mismatches(1)	CGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCAT	out-of-frame	RGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL015	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	1	79	137	low	.	.	low_entropy(1)	TGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTG	out-of-frame	VSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL015	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	101	137	low	.	.	.	GTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTT	in-frame	IFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHET	.
TALL015	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	3	3	0	296	40	low	.	.	duplicates(1)	CCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccp	.
TALL015	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	2	9	9	low	.	.	duplicates(1),low_entropy(1)	GCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAG	out-of-frame	TGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrpp	.
TALL015	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	4	1	0	8	8	low	.	.	low_entropy(1)	CAAAACTAATGTTGG___TCAGATACTCAATATGGCTGATATGTATGGACTAGAAGGATTAAAAGAAGTAGCAATCTATATTTTAAGAAGAGATTACTGTAAT...GTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGG	out-of-frame	VPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltm	.
TALL015	MTAP	CDKN2B-AS1	+/+	+/+	9:21802763	9:22029465	CDS	exon	deletion/read-through	downstream	upstream	0	0	4	8	10	low	.	.	.	GCGCAGTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACC...|...AGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAGGTCTGTGTGATAAAAGAAGAGCCTTG	.	.	.
TALL015	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	4	0	42	5	low	.	.	.	CTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCC	.	.	.
TALL015	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	0	3	1	31	7	low	.	.	.	AGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAAC	.	.	.
TALL015	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87036400	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	3	1	0	200	12	low	.	.	low_entropy(1)	AGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTTTCTATCAACACCACGAGAGAAACACACCCTCCAGCCTGGGTCCCAGAATGAGGCAGGTGAG...AACATCCAGCTCTGTGGACGTTGGGGGTAAGAGAGCAGGAATGCGAATGCTAAGAAGCCGAGTAATAGACATATCCATGGTGCCTAGTTTTGCAGCAGAA	out-of-frame	RLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|gfyqhherntpsslgprmrqv	.
TALL015	RNU6-562P(22751),UPRT(48525)	UPRT	./+	+/+	X:75225560	X:75274526	intergenic	CDS	deletion/read-through	downstream	upstream	1	0	2	2	38	low	.	.	.	AGCAACCAGTAGCTGGGGGCAGAATGAGAAATGCAGTTTTACTCCTCCTGAGAATAATGCTTCCAGTTGGGGGAGAGGCAGTCCTATATTCTTGGCTGCTGTAGCCTGGAGTGAAGTTTCTACCTTG|CAGCTGGCAACTCCTTCCTAGAGGACTGCGAACTCTCCCGGCAGATCGGGGCGCAGCTTAAGCTGCTGCCTATGAATGATCAGATACGGGAGCTACAGACCATCATCCG	.	.	.
TALL015	VTI1A	RP11-57H14.5(15392),RP11-57H14.3(40889)	+/+	./+	10:112815919	10:112847846	3'UTR	intergenic	deletion/read-through	downstream	upstream	1	0	2	35	1	low	.	.	.	TGTGATGTCTGAGGATAAAAATGCAGCAAAAAGCAGGGGATGGAGTCAGTGACCCCGTCCAGCAAGCCAGCCCTGTTCCTACACAGGCCTCATGAATAT...GTCATCAACCTGCCTGAGTGCTTTCATTGTAAAG|AATCTCTTGGGTGCCAGACACTGTGCCTAGTTACTGAAGAAACATATCTCCTATCTGAGGCACCAGGCATATAAGTAAAGAAGAAACCATCTTGGACAGTCAAGCACACACCAGATAGAGCGGAAGAACCACCCAG	.	.	.
TALL015	ATP2A3	ATP2A3	-/.	-/.	17:3934820	17:3945985	intron	intron	duplication	upstream	downstream	3	0	0	38	116	low	.	.	.	.	.	.	.
TALL015	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	2	0	24	4	low	.	.	low_entropy(1),mismappers(1)	GGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GGTTTTTATGGAGGACACAAACAAATGGAAAAACATTCCATGC	out-of-frame	GGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL015	KIAA1279	ACTBP14(17698),SRGN(46542)	+/+	./+	10:69011015	10:69041564	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	1	44	1	low	.	.	.	CTCAGCCACAGAAGACA___CTCCTGAAGCTGAAGGAGAAGTGCCAGAGCTTTATCATCAAAGAAAGGGGGAAATAGCAAGGTGCTGGATCAAATACTGTTTGACTCTCATGCAGAATGCCCAACTCTCCATGCAG|AAGAATGAAGAGGAGCTGCAGGACAAGTTCCAACATCTCTTTTCC	out-of-frame	SATEDTPEAEGEVPELYHQRKGEIARCWIKYCLTLMQNAQLSMQ|kneeelqdkfqhlf	.
TALL015	PGS1	GPR56	+/+	+/+	17:78419725	16:57650253	splice-site	splice-site	translocation	downstream	upstream	1	0	0	103	183	low	.	.	.	TTCACCGGGACCTGGAGGCCCAGATTGCGATCGTGACGGAGAACCAGGCCCTGCAGCAGCAGCTTCACCAG___GAGCAAGAGCAGCTCTACCTGAGGTCAGG...GAGGACAGACAGGTGCTGTCTCTAGCATCACCTCTCAGCACGATTTTCCCGAGAGTTCACAG|GTGGTGACTTCCAAGAGTGACTCCGTCGGAGGAAAATG	.	.	.
TALL016	ST6GALNAC4	RP11-203J24.8	-/+	+/+	9:127916161	9:127940407	exon	splice-site	deletion/read-through/3'-3'	downstream	upstream	25	17	5	172	118	high	.	.	duplicates(2),low_entropy(2)	GAGTTCTGCCTGGCACCTGCTCCCCTGCCCATGAGGAACCAGAGACCTTGACTCAGGCAGTCGAGATGAACTGCCCCCCACATCC?GCTCTCTCTCTCACAGCCCGGGGCTTCTGCAGTAAAGACAAGAGCGGCTGAACTGAACTTCACAACCCCAGTTCCACGTAGGCTTTGCCTG|GAATCTGGAACGATGAAGGTGATGATTGTGCCTGTGGCCAAGACCGGGAGAACCCTGGATCCCTACACCTTCCCCACCCCTGGAATGTCACTATACATATCTGACTTCTTCTGATGTTGCCTTTGACCCTAAAGTCAATATGATAAAGTAACAAG___AAGCTGGGACAGAGGAACAAACACAGCCCACTCAAGCAGTGGTGGCAACATTCTGTTAGAAAGGAGGGGAGTCAAAGAAAAAAACACCCCTCCGCCCATCTCCTTATCACCTCCCTAAAGACAGAGGAG	.	.	.
TALL016	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	12	11	3	90	293	high	.	.	duplicates(1),low_entropy(1),mismappers(2)	GGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL016	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	26	293	low	.	.	duplicates(1),read_through(12)	CGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCA	out-of-frame	RELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL016	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	5	8	1	24	28	high	.	.	duplicates(2),low_entropy(3)	GCAAGGAGCCAGCAAGTCTAGCAAACATGCAAGCCCTGCCCCAGCTTTTCTCCCAACACTCAGCTCTTCTCCCAACACAAGAGCTTTTGGAGGTCACTTC...GTTTCCAGCATGATTATTGCAATGACCAATGGAACAATGATGAAACATCCATTTTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___TGTTTCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAGGACTGCAAGTATATCGTGGTGG	.	.	.
TALL016	MGMT	RP11-109A6.3(44288),EBF3(21560)	+/+	./+	10:129759341	10:129813723	splice-site	intergenic	deletion/read-through	downstream	upstream	6	4	0	131	14	high	.	.	low_entropy(2)	CCTATTTCCACCAGCCCGAGGCTATCGAAGAGTTCCCCGTGCCGGCTtTTCACCATCCCGTTTTCCAGCAAG___AGTCGTTCACCAGACAGGTGTTATGGAAGCTGCTGAAGGTTGTGAAATTCGGAGAAGTGATTTCTTACCAGCAATTAGCAGCCCTGGCAGGCAACCCCAAAGCCGCGCGAGCAGTGGGAGGAGCAATGAGAGGCAATCCT|GTCTTGGAAGAAACCATCACACCGAGGTCATTTCTGAGCACAGCGTGGAAGCTCCTATGTTTGCAG___ATTGATTCCTTGGAGTGGAATTAGTAAAAAGGATATGAATATTTTTAGTCTCTTGATATGTcAGACTGATTTCCAGAAGGCTTGTACCAATTTACTCTTCTACCG	out-of-frame	YFHQPEAIEEFPVPAfHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNP|vleetitprsflstawkllclqidslewn*	.
TALL016	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	8	26	2	122	47	medium	.	.	low_entropy(7),mismappers(2),mismatches(3)	CCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTG...___...C...___...TTCGCG...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTG...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAG	.	.	.
TALL016	KCTD3	KCTD3	+/+	+/+	1:215580989	1:215579763	CDS	intron	duplication	downstream	upstream	0	2	1	57	21	medium	.	.	.	GTCTGGTAAGTGCTGTTTATATCAGTAATCTCAGGTTTATATTTTCCTTGTAGTAATGATTAAGTGCAGACTTTTATGTTTTAAGAGTGTTTTGGCTGGGCAC|GCTGGGATTACAGGTGTGAGCCACTGTGCCCGGCTCTTAACAAAACTATTAACCAAAACAGGCAGAAGGCTGAAACTGGCCTGGTGGCTGTAATTTGCCAACCCCCGG	.	.	.
TALL016	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	6	95	medium	.	.	.	CATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGC	.	.	.
TALL016	GRAMD1A	GRAMD1A	+/.	+/.	19:35002666	19:35003945	intron	intron	duplication	upstream	downstream	2	0	1	15	18	medium	.	.	.	.	.	.	.
TALL016	OAZ1	PPP1R12C	+/+	-/-	19:2269744	19:55096335	splice-site	splice-site	inversion	downstream	downstream	1	1	1	1702	110	medium	.	.	.	CGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|CTTCGGAACCAAAAAGAAGCTTCCCAGAGCCGGGGCCAGGAGCCCCAAGCGCCCTCTAGCAGCAAACACAGAAG___GAGCTCTGTGTGTCGTCTGAGCAGTCGCGAGAAGATTTCCCTCCAGGACTTGTCCAAGGAGCGCCGG	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEs|fgtkkklpragarspkrplaantegalcvv*	.
TALL016	CCDC66	CCDC66	+/+	+/+	3:56570498	3:56567944	3'UTR	intron	duplication	downstream	upstream	1	1	0	31	13	medium	.	.	.	GCAATTAAGAAATAATAGCTAACATTCATTGAATATTTACTTTGTGCCAAGCCCTATATTGAGATAGGCACTATTATTATCCCCATTTTATAGAAGAAAC...AGTTGGCCAACTGCGGTGGGCTCATGCCTGTAAT|CCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCACGCCCGGCCAAAAGTGGTTTTATTATGTACATGAGACCTCAAAGGTAGTAGCCTTCAGAGAACAGATGACAAATGTTTCCTTCAGACCTTTAAAGGTGTCAGACTCGG	.	.	.
TALL016	RP11-106M3.2	TSPAN3	-/-	-/-	15:72345446	15:77056255	splice-site	splice-site	duplication	upstream	downstream	2	0	0	185	253	medium	.	.	.	CCAGGCTCTG___GCCCAGAGCAGGGGCTGTTGCCGAAAGGCTGTGGAGCAACAAGTTGACATCTGACCTGACATTTGCCTATGAACGTTTGTCACACTTCCGCTGTGAgTTGCTGAG|GGGGCAGCTGGCATTTTATGCTATGTGaGA	out-of-frame	RLWPRAGAVAERLWSNKLTSDLTFAYERLSHFRCELLr|gqlafyam*	.
TALL016	HEXA	TSPAN3	-/-	-/-	15:72345446	15:77056255	splice-site	splice-site	duplication	upstream	downstream	2	0	0	185	253	medium	.	.	.	CCAGGCTCTG___GCCCAGAGCAGGGGCTGTTGCCGAAAGGCTGTGGAGCAACAAGTTGACATCTGACCTGACATTTGCCTATGAACGTTTGTCACACTTCCGCTGTGAgTTGCTGAG|GGGGCAGCTGGCATTTTATGCTATGTGaGA	out-of-frame	RLWPRAGAVAERLWSNKLTSDLTFAYERLSHFRCELLr|gqlafyam*	.
TALL016	N4BP2L1	C12orf57	-/-	+/+	13:32427904	12:6945771	splice-site	splice-site	translocation	upstream	upstream	2	0	0	288	1128	medium	.	.	.	TGGAGGACAGTTTCCTTCAATCTTTTGGGAGGCTGAGCCTCCAGCCCCAGCAGCAGCAGCAGCGGCAGCGGCCGCCCCGGCCGCCCCCGCGGGGGACACCTCCTCGCCGCCACAGCTTTAGGAAACACCTCTACCTCCTGCGAGGCCTCCCGGGCTCCGGGAAAACTACACTGGCCAG|GTGTCCTTAAGTTTGCTCGCTTGGTCAAGTCCTACGAAGCCCAGGATCCTGAGATCGCCA	out-of-frame	EDSFLQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLAr|cp*	.
TALL016	ZNF37A	RP11-508N22.13(9343),RP11-508N22.6(1934)	+/+	./+	10:38096632	10:38159636	splice-site	intergenic	deletion/read-through	downstream	upstream	5	3	0	52	23	low	.	.	.	ATTCGTTACTCGCTCGTTCTAGATGCTGAGCTGCTGGCGCACTGCAGCACAACTAGAGATGTACGGATGCCCCCATCTTGATCTTACAGAATCAGAGGTACAGCCGCGAGAAAG___AGTCAAGAACAGACAGAGTCGCTTGAGGACTCAGGAGGGTGTTTGCTGCGTTGACAACAGA___CTACACCCTCACAGTTTGCTCTGCTCTTCCAACACCAGTGGAAGATGATCACATCCCAG|GTTGTATCAACTGTTGGGGTGATCAGACCCAACACCAGGCCATGGGGTCTATGAAGTCTGGCGGCATCAAAGGAATGAGGAAAGACAAGTTAAGAGAGAAAGTGGGACCAGGGGGCCAATGCTAGTATGGAGGCTGCGAA	out-of-frame	MITSQ|vvstvgvirpntrpwgl*	.
TALL016	MLLT11	GABPB2	+/+	+/+	1:151060553	1:151088190	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	1	105	15	low	.	.	.	GAAGACAAAGCCGTCAAAGCCCCAACAGCTTTGTATTTCTCCAGCCCGGCGCAGACCCCGGAGCTCCCGAGGCACTCCCTCCATCTTTGGAACACGCCAGTAATTGATTGATAACAG|ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAACGTTGATGGCAAATGGCGCCCCATTCACCACAGACTGG___CTTGGAACATCACCCCTCCACCTTGCAGCTCAATATGGTCATTATTCCACAGCAG	.	.	.
TALL016	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	1	68	140	low	.	.	.	GCTGTGCACCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACC	out-of-frame	MGLGRCIWE|gprelllcarpgpga*	.
TALL016	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	55	140	low	.	.	duplicates(1)	CTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGAT...AACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCC	out-of-frame	NTLVAVSIFLLLTGPTYLLFKLSPr|sqrttsmcqtwarclrlmfhptcltcpalpttsctlptwapal	.
TALL016	IL9R	WASH6P	+/+	+/+	X:156004565	X:156021694	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	75	48	low	.	.	.	CCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG...GGAAGAGGCCTGGGAG|GTAGAGCAGAGCCGGAGCCAGGTGCAGGCCATTGGAGAGAAGGTCTCCTTGGCCCAGGCCAAGATTGAGAAGATCAAGGGCAGC	out-of-frame	EEAWE|veqsrsqvqaigekvslaqakiekikg	.
TALL016	IL9R	WASH6P	+/+	+/+	X:156004565	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	75	140	low	.	.	read_through(3)	CTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCC	out-of-frame	CILTWSISPALEPMTTLLSYELAFKKQEEAWE|vpenyfyvpdlgqvpeidvpsylpdlpgiandlmyiadlgpgia	.
TALL016	IL9R	WASH6P	+/+	+/+	X:156007607	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	37	140	low	.	.	read_through(1)	CCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGAC...GGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGG	out-of-frame	Q|vpenyfyvpdlgqvpeidvpsylpdlpgian	.
TALL016	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	4	2	1	24	17	low	.	.	low_entropy(1),mismappers(1)	GCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAG...GAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAA	out-of-frame	PDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL016	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	3	13	4	low	.	.	low_entropy(1)	AAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCA	.	.	.
TALL016	IRGM	CTC-311G1.1	+/+	-/+	5:150879646	5:150951737	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	5	0	15	6	low	.	.	.	GTTCCAGGCCTGGGGGTCGCTTCCAGCTGCCAGATCCCGTGCAGTCCTGGGGACCCTGAGAAGCACCGAGCCATCCCTGACCCAGGAACTTTCCGCAGAC...GAAGGAGCGG___CTGGCCTGCCATGAGAAATACCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATAT|ACAATGAAACATCTTCAGCTATGATAGCTTCTGGTTCTTCTGGCATATTATTTCAATCTGAAAAAAAGAGATGATGAAAAAGACTAAAAATAAGGAAAAAGTGAGACTGAGGTAGAAGAGGTAAA___GGTCTGCTTACAGAACAAGGCACAGCAAGGAGGCAAGACACAAGCAAGAAATGTGCTTGATGTTAC	out-of-frame	KERlachekylkstpenstrprni|q*	.
TALL016	LATS2(16772),RPS12P23(15999)	SAP18	./+	+/+	13:21078319	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	3	2	1	25	1717	low	.	.	.	CTTGGACCCAGGCTGGAGACACAGACAGCCAGGTGTTGATGCCCACGCGCAGCTCCAAGACCCCGGGGAGCCTCCGCCAGGCCGGAACCTGCGCCAGGCTTCTCTGGAACCTTCTCTCCAGGACGCTCTTCTGCGGTTACTGAAAAAGGGAGTCTACATGAATTAATAAGTGAAG|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTTGCAGATCTACACTTG___GATGGATGCAACtTTGAAAGAACTGACAAGCTTAGTAAAAGAAGTCTACCCAGAAGCTAGAAAGAAG	.	.	.
TALL016	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	1	45	90	low	.	.	.	GTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGG	.	.	.
TALL016	AC133528.2	ING5	+/+	+/+	2:241690653	2:241709216	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	45	119	low	.	.	.	CCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|ATAAGAAAGCAGAG	.	.	.
TALL016	TBC1D31	TBC1D31(26576),FAM83A(231)	+/+	./+	8:123144855	8:123178729	splice-site	intergenic	deletion/read-through	downstream	upstream	4	1	0	64	4	low	.	.	.	TGCGAGCAGATGCAGATGCCTATAGACGAAAAGTGGATCTTGAAGAACACATGTTTCATAAGCTGATAGAAGCAGGTGAAACCCAGAGCCAGAAAACTCAGAAG___TGGAAGGAAGCTGAAGGAAAAGAGTTCCGTTTGAGATCAGCAAAGAAAGCTTCTGCTCTTTCAGATGCGTCTAGAAAGTGGTTTTTAAAGCAAGAGATAAATGCGGCTGTAGAACATGCTGAAAATCCATGTCATAAAG|GAGCCCGGCTTCTCATCCTTTCTCTTATTGTTGGATGACCTCATGAAAAGGAGACAACCACACTTCAGATGGCCACAGGAAGGAAGAAGGGAAGTGGAGTCCTCCATAATCCACAG	out-of-frame	RADADAYRRKVDLEEHMFHKLIEAGETQSQKTQKWKEAEGKEFRLRSAKKASALSDASRKWFLKQEINAAVEHAENPCHK|garllilslivg*	.
TALL016	PTPRCAP	PPP1CA	-/-	-/-	11:67437617	11:67419597	splice-site	splice-site	deletion/read-through	upstream	downstream	0	5	0	164	16	low	.	.	low_entropy(1)	CGAGCACTGAGCTCACTTCTCGCTCGACACAGCCAGAGCTGGAGGTGGGTGCCCGGCACGGAGGGGCCTGCGGACCAATG|CTTCTCCAGCAGCGCCAGCACTGTGTCCACCACTGCACCCAGCTCTGCCCGCGGGTGCAGACGCCATGCCTGCCGCCCCCGCCAGCGCCAGCCACTGAGCTTCACAGCTACCTGCAGCAAGGAGGGGAAAGGGGCCTCCTGGACACCACCCCAGGTACTGCAGGGTGGGGCACTTCCGCCACAGGAGCCGG	in-frame	M|LLQQRQHCVHHCTQLCPRVQTPCLPPPPAPATELHSYLQQGGERGLLDTTPGTAGWGTSATGA	.
TALL016	PTPRCAP	PPP1CA	-/-	-/-	11:67437617	11:67401199	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	164	222	low	.	.	.	CAGAGCTGGAGGTGGGTGCCCGGCACGGAGGGGCCTGCGGACCAATG|TGCAGGGCTCGCGGCCTGGCAAGAATGTACAGCTGACAGAGAACGAGATCCGCGG	out-of-frame	M|crarglarmys*	.
TALL016	ZNF37A	RP11-508N22.6	+/+	+/+	10:38096632	10:38159636	splice-site	intron	deletion/read-through	downstream	upstream	0	5	0	52	23	low	.	.	.	TGCTGCGTTGACAACAGA___CTACACCCTCACAGTTTGCTCTGCTCTTCCAACACCAGTGGAAGATGATCACATCCCAG|GTTGTATCAACTGTTGGGGTGATCAGACCCAACACCAGGCCATGGGGTCTATGAAGTCTGGCGGCATCAAAGGAATGAGGAAAGACAA___CTGGTTGGAGTGTTTGATGAGCAAGATCTACATCATGGAGGTGATGACACCAATGCCAGCTCCATGCATACCTAGAGCCCAGA	out-of-frame	MITSQ|vvstvgvirpntrpwgl*	.
TALL016	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	2	3	0	193	11	low	.	.	duplicates(1)	AACGTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCC...CAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCT	out-of-frame	SFEEHVASTSAALPSCLPPEVPTQLPGQ|elksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvs	.
TALL016	NT5C2	NT5C2	-/-	-/-	10:103088513	10:103096749	3'UTR	intron	duplication	upstream	downstream	0	5	0	318	22	low	.	.	.	AATTACCTGGGCGTGGTGGTGCATGCCTGTAATCCCATCATCTA|CTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCTGCCACTGCGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGACGAGGTTTTAACATCTTGGACAGGCTGGTCTTGAACTCCTGACCTCGTGATCCA	.	.	.
TALL016	ZNF644	RP4-665J23.1	-/-	-/-	1:90982310	1:90832196	splice-site	splice-site	deletion/read-through	upstream	downstream	2	2	0	67	14	low	.	.	.	CCCGGTTTGACGCACACGGCACCAAACT___GTTTGATTTAATTTTGGATGAGATCGTTCTTGCAGCAAGATGTTAATAAGACAAAATCTAG|GCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGG...CCCCACGGCGCTGCTGAGGACAGCACGGCAGCAGACAAGTCAGGCCCATGAGGAAGAAGAGGCTTTGCACTGCTCTCCAGACAACTTTTCAAACAACAAG	out-of-frame	MRSFLQQDVNKTKSr|llm*	.
TALL016	ZNF644	RP4-665J23.1	-/-	-/-	1:90918052	1:90832196	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	1	148	14	low	.	.	low_entropy(1),mismappers(1)	CAAAAGATCCATAATCAGACAGCAAGAAAGAGATTCGTTCAGAAATGCGTTCTTCCATTAAATGAGGATAGTCCGTTGATGTATCAGCCACAAAAAATGG...TGTAAGCAAAAGAAATCAAGGTCAAGATCTGGAAGCAAGAAGAAAATGCTAACATTACCTCATGGTGCTGACGAGGTTTACATTCTCCGATGCAG|GCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAG	out-of-frame	CKQKKSRSRSGSKKKMLTLPHGADEVYILRCr|llm*	.
TALL016	EIF1B-AS1	MYRIP	-/-	+/-	3:40301256	3:40154298	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	9	1	low	.	.	.	CGGCGCCGAGGGGTCGACGCTCAGGGCTAATCTCTATGAGTCACCCTCGAGGCCCCGGGTAAT___ATTGGGTGGATCACAAGAACTAATCTTTCATGATTTGGAAACCGGAAGGAAAGAAGCACTTTTGTAGCTGACTTACCTCAATGACATGACCAGTGTCTGAGCCTACAACTGCGCTATCTTCCCTGGATTTTTCTTCACCTT...|...AGGCCTAATCTGGTCAGCTGCTGTGAGCTGCAGGAGAAGGAGAAAGGTTCGCTTGGGA	.	.	.
TALL016	C21orf33	AP001055.6(7549),AP001056.1(7864)	+/+	./+	21:44140342	21:44167625	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	71	3	low	.	.	low_entropy(1)	CTTATTTCTGTTTAAAAAACAGGAAAATATGTTCACATCAAACGCGCATATGTGCAGCCATGCCCATGTCCCTTGCTGCAGCTGACTGAGGGTCTGGAGC...CAGGAATAGACCCTGGTTGTGAGGCTGTCTGAGGAGGCCTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG|CCGTGCCAGCTAGGAGGGCGACGTGGACAGGATTTCTCTCTAGAAAGGATCCTGGGGTCCGATTGAGAAGCTGGCTTGAACGTTAGACGCTGTAGCTCAGAGCACTGGGTATGCACCCAGAAGGAGAAGTGCTCATCACATG___AGTCTAAAACAATGACTGGCATGAAGTATACAAACTATACATCGCCTAGTAAGTGGAT	out-of-frame	gidpgceav*ggllspgRSTFAVDGKDCKVNKEVERVLKEFHQAGKPIg|ras*	.
TALL016	AOAH	ANLN	-/-	+/-	7:36522039	7:36397102	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	2	1	75	4	low	.	.	duplicates(1)	CTTCCAACAAGACGTTGCGGACTCTCACTTCAGAG___TCATACAGGAGTGGCAGAAGAGAGGCGGACAGCCCTGGCAGCTCATCGAGCCCGTGGATGGATTCCACCCCAACGAG|TTGTATTACAGTATTTTACAGTCGTACTAAGGAAGATTATTATCTCCAGACTATTCTACACTCCAGGAAAAGACTAAGGAGGCTGTCTGATGCTGGCTGGGAATCAATCCTAGGATTGAGGAAAGAGTAAGACTACAGG	out-of-frame	SNKTLRTLTSESYRSGRREADSPGSSSSPWMDSTPTs|citvfysrtkedyylqtilhsrkrlrrlsdagwesilglrke*	.
TALL016	KBTBD4	CELF1	-/-	-/-	11:47575593	11:47489024	splice-site	splice-site	deletion/read-through	upstream	downstream	1	3	0	67	153	low	.	.	.	TCCGTGTTCTCAGAACCCAACAGAGGCAATAGAAGCCTGGATCAACTTTAATAAAGAGGAAAGAGAGGCTTTTGCAGAGTCACTCAGGACAAGCTTGAAG|CTCAAAGAAAATGAACGGCACCCTGGACCACCCAGACCAACCAGATCTTGATGCTATCAAGATGTTTGTGGGCCAGGTTCCAAGGACCTGGTCTGAAAAGGACTTGCGGGAACTCTTCGAACAGTATGGTGCTGTGTATGAAATCAACGTCCTAAGGGATAGGAG	out-of-frame	PCSQNPTEAIEAWINFNKEEREAFAESLRTSLK|lkenerhpgpprptrs*	.
TALL016	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	0	2	2	32	45	low	.	.	low_entropy(1)	CAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGG...TTAaAGGTATGATCTCGTGAAACCTTGAGAGAAACTGAATGACGAATGAAACTATTGTTCCTGTTTCA	.	.	.
TALL016	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	0	168	12	low	.	.	mismatches(1)	AAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCGAGGATTTAGCTAGCTGGTG	out-of-frame	KNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
TALL016	GRAMD4	TBC1D22A	+/+	+/+	22:46675510	22:46774234	CDS	5'UTR	deletion/read-through	downstream	upstream	0	0	4	157	0	low	.	.	duplicates(1),mismappers(1)	GGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTGCTCTACGTCACGGAGAA___TTACTTGTGCTTCGAAAGCTCCAAATCTGGGTCCTCAAAGAGG...|...AG___CATCCAGCACGTGTATGGTGCCCAGCACCCCCCCTTTGATCCACTGTTACATGGCAC___TTTGCTCAGGTCCACG	.	.	.
TALL016	ANKRD36	RP11-734K23.9	+/+	+/+	2:97224879	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	40	241	low	.	.	mismappers(1)	GAAAATAAAAATTCTGTTCTGAATACAGCCACCAAAATGAAGGATGTACAAACATCCACACCAG___CAGAACAAGACTTAGAAATGGCATCAGAGGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAG	out-of-frame	ENKNSVLNTATKMKDVQTSTPAEQDLEMASEGEQKRLEEYENNQPQ|flhrhypkqcfttvadrpenfhlkqqselq	.
TALL016	ANKRD36	RP11-734K23.9	+/+	+/+	2:97233871	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	33	199	low	.	.	.	AAACAGTCTCAGAGGACGGTGACTCGCTTTGCTGTAATTGTAAGAATGTCATATTACTCATTGATCAACATGAAATGAAGTGTAAAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAG___ACACTACCCAAAGC	out-of-frame	TVSEDGDSLCCNCKNVILLIDQHEMKCK|gdgis*	.
TALL016	ANKRD36	RP11-734K23.9	+/+	+/+	2:97241479	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	99	241	low	.	.	.	CGAAAACTGAAAAATAAGGCTAGTGTACTACAAAAGAGAATATCTGAAAAAGAAGAAATAAAATCGCAGTTAAAGCATGAAATACTTGAATTGGAAAAAGAACTCTGTAGTTTGAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACaACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTTGG	out-of-frame	RKLKNKASVLQKRISEKEEIKSQLKHEILELEKELCSLs|fstdttqssasqqwqtdlkifi*	.
TALL016	ANKRD36	RP11-734K23.9	+/+	+/+	2:97241479	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	99	199	low	.	.	.	AAAAGAGAATATCTGAAAAAGAAGAAATAAAATCGCAGTTAAAGCATGAAATACTTGAATTGGAAAAAGAACTCTGTAGTTTGAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAG___ACAC	out-of-frame	KRISEKEEIKSQLKHEILELEKELCSLr|*	.
TALL016	ANKRD36	RP11-734K23.9	+/+	+/+	2:97250173	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	62	199	low	.	.	.	ACAGGATCAACTTACAGCTACTATAAGATGTACTAAGGAGATGGAAGGCGACACACAAAA___GCTTGAAGTAGAACATGTGATGATGAGAAAAATTATTAAAAAACAGGATGACCAAATTGAGCGGCTTGAGAAAATCCTGCAGCATTCAAGTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAG	out-of-frame	QDQLTATIRCTKEMEGDTQKLEVEHVMMRKIIKKQDDQIERLEKILQHSSLMLQVFES*mk|vmasaekgrkpmrgh*	.
TALL016	SPATA2	SLC9A8	-/-	+/-	20:49915380	20:49884055	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	1	0	2	16	43	low	.	.	.	CTGCTGGCCCCCGGGTACTGGTCTCAGTACCCCTGCAGCCGGCCGGAGAGGCTAGAGCCCGACGGGGCCCGGCTCCGGCGGCAGCCGCGCCTCTCGCTTGCTTCCCTCGGCCGGGCCGTCCTCGGCGGCAGTGTCAGG|TCTTGCTGAGGTTGACGTCCTTCTTGTTCCTGC	.	.	.
TALL016	RPS6KB2	TMEM134(13521),AIP(248)	+/+	./+	11:67434694	11:67482793	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	58	4	low	.	.	.	GTGGACCCCCCTTTCAGGCCCTGTCTG___CAGTCAGAGGAGGACGTGAGCCAGTTTGATACCCGCTTCACACGGCAGACGCCGGTGGACAGTCCTGATGAC...GTCCTGGACAGCATCAAGGAGGGCTTCTCCTTCCAGCCCAAGCTGCGCTCACCCAGGCGCCTCAACAGTAGCCCCCGGGCCCCCGTCAG|TGCTGTTATATTCCATCCACAACTTCAAACAAAGTGCCACACGGCCGCAGTCCCAATCAATTCAATGACAATTGTTAGGGACGTCCTCGTCCCGCCCGGCCCGCGGACCCCGGCCCTTCCTCCTTGACAGGCTGGGGTCCAGCCCCGAGACATTCCTAGGCTCCGCCCCCGAGCAGACGCGCGCGCTCAGCCCCAGCGCAGAGAACC	out-of-frame	VLDSIKEGFSFQPKLRSPRRLNSSPRAPVs|avifhpqlqtkchtaavpinsmtivrdvlvppgprtpalpp*	.
TALL016	TPCN2	RP11-554A11.7(26374),RP11-554A11.8(11760)	+/+	./+	11:69079628	11:69135468	exon	intergenic	deletion/read-through	downstream	upstream	0	0	3	5	5	low	.	.	.	CTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___TgaCCC...|...ACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGT	.	.	.
TALL016	NFATC3	SLC7A6	+/+	+/+	16:68191775	16:68266593	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	56	12	low	.	.	.	CTGCCTCATCACCGTCTCCAGCCACCAGAATGCATTCTGGACAGCACTCAACTCAAGCACAAAGTACGGGCCAGGGGGGTCTTTCTGCACCTTCATCCTTAATATGTCACAGTTTGTGTGATCCAGCGTCATTTCCACCTGATGGGGCAACTGTGAGCATTAAACCTGAACCAGAAGATCGAGAGCCTAACTTTGCAACCATTGGTCTGCAGGACATCACTTTAGATGATG|AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTTCTTGACAG___GCCACAGCAAACACAGG	out-of-frame	ASSPSPATRMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIKPEPEDREPNFATIGLQDITLDD|efmwprqtsgirpccrglhfllstgpiyeevayesvmfayfltghskh	.
TALL016	HMGB3P30(25785),AMOT(58198)	LHFPL1	./-	-/-	X:112716305	X:112671647	intergenic	intron	deletion/read-through	upstream	downstream	1	0	2	6	2	low	.	.	low_entropy(1)	CTCCGAGCCAG___ATGGCTTCAGGATGCTGATGCTTTCACTGAGAACACCAATGCCTAAACTCTTTGTTGGACCAAGGCAGTATTACTGATGATGAATCCCTCTTTCAGACTGCTGCAGATGCTTGTACTTAGAGTACTTAACCTGCATATAAG|CCTAAAGACCATAGAACTCTAAATCAGGCAGAAGGAAGGGAAGGTGGGAAAAGTACTGAAAAGCAAAATCCCACAGGGATCCAAATGGTCCTCGAGAGAATAATCTTATCCAGAAG...AGCAACCAAGTGAAATAGGTGCTGTCATTATCTTCATCTTATCATGAGGATGAGAAGTTCACAGAAAGaTgAA	.	.	.
TALL016	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	1	0	13	3	low	.	.	.	GTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACC...ACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTC...ATGTGAAGATGGCCAGCAG___GCTGCACATGTTCTTCGGAAAAAGATCTAAAAGCATCACCTTTTGCTTTGTCTGCTGGTGCTTAAG	out-of-frame	PAACQHRCr|lhwri*	.
TALL016	IKBKG	CTAG1A	+/+	+/+	X:154556376	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	49	5	low	.	.	.	CCAGATTCTGCGGGAGCGCTGCGAGGAGCTTCTGCATTTCCAAGCCAGCCAGAGGGAGGAGAAGGAGTTCCTCATGTGCAAGTTCCAGGAGGCCAGGAAACTGGTGGAGAGACTCGGCCTGGAGAAGCTCGATCTGAAGAGGCAGAAGGAGCAGGCTCTGCGGGAGGTGGAGCACCTGAAGAGATGCCAGCAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGC	out-of-frame	QILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQ|ptdccrppptaalhqllsp	.
TALL016	IKBKG	CTAG1A	+/+	+/+	X:154564020	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	63	5	low	.	.	.	CAGGAGTCGGCCAG___GATCGAGGACATGAGGAAGCGGCATGTCGAGGTCTCCCAGGCCCCCTTGCCCCCCGCCCCTG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGC	out-of-frame	QESARIEDMRKRHVEVSQAPLPPAP|ad*	.
TALL016	LZTFL1	SLC6A20	-/-	-/-	3:45826255	3:45782229	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	3	551	8	low	.	.	mismappers(1)	ACCAAATCAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGG...|...CCtCAGGTAGTTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCG___GGGTCGCCAGCGTGGTGGTCTCTTT	.	.	.
TALL016	LINC01226	LINC01225	+/.	+/.	1:31523622	1:31524541	exon	intron	duplication	upstream	downstream	1	1	1	11	10	low	.	.	.	.	.	.	.
TALL016	MYL6	NABP2	+/+	+/+	12:56160320	12:56225373	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	4364	60	low	.	.	mismatches(1)	CAGTGGCCAAGAACAAGGACCAGGGCACCTATGAGGATTATGTCGAAGGACTTCGGGTGTTTGACAAGGAAGGAAATGGCACCGTCATGGGTGCTGAAATCCGGCATGTTCTTGTCACACTGG___GTGAGAAGATGACAGAGGAAGAAGTAGAGATGCTGGTGGCAGGGCATGAGGACAGCAATGGTTGTATCAACTATGAAG|GCCGAGTGACCAAGACAAAGGACGGGCATGAGGTTCGGACCTGCAAAGTGGCGGACAAAACAGGCAGCATCAATATCTCTGTCTGGGACGATGTTGGCAATCTGATCCAGCCTGG	in-frame	VAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYE|gRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQP	.
TALL016	AP001347.6	RBM11	+/+	+/+	21:14084144	21:14221097	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	17	5	low	.	.	mismappers(1)	CTAGTTGGATCCTTATCCCACCAATCTGGCCCACCTTTGCTGCCATCTAACTCCGCTGACCGGCCCACCGTTCCTCCACTGTcCGCTGGTTGACCCGGGCAGCGGAGAGAGGAG|GGAGTTCTCGCTCTTCTGAACCAGCTAACCAAAGTTTTGAGAGCTGTGTTAAGATAAATTCAC...GCTGCAGCTTCCTTACTATGAAATGACAGCTCCACTTCCTAATAGTGCATCCGTGTCTTCCTCACTGAATCATGTTCaAGATCaTGAGGCTGGACCCAG	.	.	.
TALL016	ABLIM1	AFAP1L2	-/-	-/-	10:114437844	10:114340731	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	90	3	low	.	.	mismappers(1)	CTGCAATGAGAATGGACCGAGGAGTGTCTATGCCCAACATGTTGGAACCAAAG___ATATTTCCATATGAAATGCTCATGGTGACCAACAGAGGGCGAAACAAAATCCTCAGAGAGGTGGACAGAACCAGGCTGGAG|CCCTGGAACAGCTGCTGACAGAGTTGGATGACTTCCTCAAGATTCTTGACCAGGAGAACCTGAGCAGCACAGCACTGGTGAAGAAGAGCTGCCTGGCGGAGCTCCTCCGGC...TACACCAAAAGCAGCA___GCTCTGATGAGGAGTACATTTATATGAACAAAGTGACCATCAACAAGCAACAGAATGCAGAGTCTCAAGGCAAAG___CGCCTGAG	out-of-frame	AMRMDRGVSMPNMLEPKIFPYEMLMVTNRGRNKILREVDRTRLE|pwnsc*	.
TALL016	ZNF609	AC100830.3(18064),RBPMS2(2226)	+/+	./+	15:64681387	15:64737666	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	0	31	4	low	.	.	.	CAAGGCTCAACTCCCTCACTCTACCCACCCCCCAGGAGGTGAGAATG|GGAGGGGATTACATGGAAAGACAGCCTCTCCTGCCAACGAGGGGATTTCATCGCTGCTGGGAA??GACCTCACACCAAAAGAACCCTGGTGGAGGCTGGGCATGGTGGCTCACG	out-of-frame	QGSTPSLYPPPRR*ew|egitwkdslscqrgdfiaag??phtkrtlveaghggs	.
TALL016	GYPE	RP13-578N3.3	-/-	+/-	4:143880411	4:143841053	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	0	2	0	13	3	low	.	.	mismappers(1)	CTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATG|AAAGAGCATGCTCCCTGTGTTGATGCAGTCGCCCCCCTCCCGGGCTTTGTTCTACACATGGATGTAACCTGCCACACACTGGA	out-of-frame	SSVTKSYISSQTN|eracslc*	.
TALL016	OPA3	RTN2	-/-	-/-	19:45584623	19:45495139	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	27	6	low	.	.	.	TGGGCGCGTTCCCTATGGCGAAGCTGCTATACTTGGGCATCCGGCAGGTCAGCAAGCCGCTTGCCAACCGTATTAAGGAGGCCGCCCGCCGAAGCGAGTTCTTCAAGACCTATATCTGCCTCCCGCCGGCTCAAC|AAGAAGCTCCGTCTACAGCCTCCTCAACTCCTGATTCCACAGAAG___GAGGGAACGACGACTCTGATTTTCGAGAGCTGCACACAGCCCGGGAATTCTCA	in-frame	GAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQ|qEAPSTASSTPDSTEGGNDDSDFRELHTAREF	.
TALL016	CD82	RP11-244C20.2(5802),RP11-45A12.1(32141)	+/+	./+	11:44615373	11:44662722	splice-site	intergenic	deletion/read-through	downstream	upstream	0	1	1	133	1	low	.	.	.	GGCCGGGGCCCTCTTCTACTTCAACATGGGCAAG___CTGAAGCAGGAGATGGGCGGCATCGTaACTGAGCTCATTCGAGACTACgACAGCAGTCGCGAGGAC...CTACGTGCAGGCTCAG|ACCAGGCTCCTAGATGTTGGGGACTGAACCCTGGCTCCGTTCCACCTGGCTTGTCACTACGTTGTCATTCACAAACG...GAGCATGAAGcaAGATAAAAGCCTGTAGGTTTCTCAGTGTCTGATGCACCTCTTAATATTGGAATTAAGATAAACATCATGGCTCCCTCTCCCTCTCCC	out-of-frame	YVQAQ|trlldvgd*	.
TALL016	ACOT12	CKMT2-AS1	-/-	-/-	5:81330814	5:81239360	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	6	7	low	.	.	.	CTGAATGATGACAAACCCAAAGACTTGGTAGTACTCGTATCACGAAGAAAACCCCTCAAAGATGG___TAACACTTACACAGTGGCAGTGAAGTCGGTCATTT...TTCTCATCCATGCTATTGACAGCAATTCATGCATC|TCCAGATTCCTAAGATGAGGACACAGCATCCTGGGCCACTGTCACTAATACAAATTTGCCTCTGGAGGGACT...GAAATTTGGAGAGTTGAATTAAGCTAGGACTGATTCTGGCTGGAATTTGTGGTGGCTACGTACCCTAGAGGGCCTCAAGGAAACCCACGGTTCAAGACAG	out-of-frame	LIHAIDSNSCI|srflr*	.
TALL016	ANKRD36B	AC159540.1	-/-	-/-	2:97523374	2:97423918	CDS	splice-site	deletion/read-through	upstream	downstream	1	1	0	104	218	low	.	.	duplicates(1)	GGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG___GTGAAAAACCAAATACATTCTAGGGATGACCTTGATGACATAATTCAGTCATCTCAAACAGTCTCAGAGGACGGTGACTCGCTTTGCTGTAATT|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCC...CAGAGAAGGAACAcCTAGAGGGAGAAGCCAAGGCAGGCGTGTGTG___TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTcCAGTGGCAGACAGACC	out-of-frame	GEQKRLEEYENNQPQVKNQIHSRDDLDDIIQSSQTVSEDGDSLCCN|cdgis*	.
TALL016	ANKRD36B	AC159540.1	-/-	-/-	2:97507036	2:97423918	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	59	218	low	.	.	.	CCAAATTGAGCGGCTTGAGAAAATCCTGCAGCATTCAAGTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG|GTGATGGCATCAGCTGAGAAGGGAAGG...GGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAG___TTTCTCCACAGACACTACCCAA	out-of-frame	QIERLEKILQHSSLMLQVFES*mk|vmasaekg	.
TALL016	TMEM182	TMEM182(15973),AC007251.2(13473)	+/+	./+	2:102834518	2:102859866	intron	intergenic	deletion/read-through	downstream	upstream	0	1	1	0	4	low	.	.	duplicates(1)	TTTCAACAGATATAG|TTTCTGTGGGTCAAGAGTGTGGAAGTGGCTAAGCAGAATGAGTCCAGCTCAGAATCCCATGAGTCTGCTAATCAAGCTATTTTCTGGGGTTGCAATCATCTGAAGGCCCAGCTGGGGCTAAAGAACGCAC	.	.	.
TALL016	GYPC	RNU6-675P(15196),AC114783.1(180758)	+/+	./+	2:126693947	2:126718138	splice-site	intergenic	deletion/read-through	downstream	upstream	0	1	1	1246	3	low	.	.	mismappers(1)	CCCCAACAGCACGGCGTGGtCTCTCAGCCTCG___...G___AGCCTGATCCAGGGATGTCTGGATGGCCGGATGGCAGAATGGAGACCTCCACCCCCACCATAATGGACATTGTCGTCATTGCAG|ATGCCAGCTCCTCAGAAGTCTGCTCTGGTCATCGCACCTGCTCTCCTGTCCCCAGCCTGCTCCCTCACTTCGCCATGTTACTCCTTCACAG___GTGCGCAGCCCTGACTTTCACCTGGAGCTTCTGAAGATGCGGCGCCAGCTGCAAGCCCTTCTCTGGAG	out-of-frame	EPDPGMSGWPDGRMETSTPTIMDIVVIA|dasssevcsghrtcspvpsllphfamlllhrcaaltftwsf*	.
TALL016	ITFG2	TULP3	+/+	+/+	12:2836956	12:2909529	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	14	26	low	.	.	low_entropy(1)	CGCCACGTGAAGGCTGAGGTCGGGATAATGCATCTGCAAGCCAAGGAACACCTAAGAGGACCAGCAAACCACCAGAAGCCAGGGGAGAGGCGTGGAACAGACCCTGCCTTACAGCTGTCAGAAGGAACCAACCCTGCCAACACCTTCCTGTTGTACTTTCAGCTTCCAGAACT|TGTCTTCCATGAAGAAATGATGAAGATGCGACAGGCTAAGCTGGATTATCAG___AGGCTACTACTTGAGAAGAGGCAAAGGAAAAAGCGCCTTGAGCCATTTATGGTGCAGCCCAATCCAGAAGCCAGGCTACGTCGGGCAAAGCCAAGGGCCAGTGATGAGCAGACTCCCTTGGTGAACTGTCATACTCCCCA	.	.	.
TALL016	TYW1B	CALN1	-/-	-/-	7:72558888	7:72441155	CDS	intron	deletion/read-through	upstream	downstream	0	0	2	0	1	low	.	.	mismatches(2)	GTACAGTTTGTCCGCGAGCTGGTGGATCTGATCCCCGAATATGAAATTGCATGTGAACACGAACACTCTAATTGCCTCCTGATAGCACACAGAAAG___A...|...TTTATTTCTTTCGGCATTCATCAAACAACTGCTGCATACCAGGAGTAAAGAACATGGAAACAAAAGACAGATTTTACCCTACTTGAAAGAATATTTATT	.	.	.
TALL016	KDM4B	PIAS4	+/+	+/+	19:5041251	19:4012923	splice-site	splice-site	duplication	downstream	upstream	0	1	0	62	27	low	.	.	.	GCTGACATCAGCGGCTCTTTGTATGATGAC|AACATGGTGATGAGTTTTCGAGTCTCCGACCTTCAGATGCTCCTGGGTTTCGTGGGCCGGAGTAAGAGTGGACTGAAGCACGAGCTCGTCACCAG	in-frame	ADISGSLYDD|NMVMSFRVSDLQMLLGFVGRSKSGLKHELVT	.
TALL016	SETD2	ACBD3	-/-	-/-	3:47083720	1:226166000	splice-site	splice-site	translocation	upstream	downstream	0	1	0	91	125	low	.	.	.	AAAACAGTGGATATAAGTGATTTGGCCACCAAACTCCTGGACAGTTGGAAAGACCTAAAG|AAAAAGATGGCAAAGCATTTCATCCAACTTATGAAGAAA...ATTGAAGCTTGTGGCACTGCATAAGCAAGTTCTTATGGGCCCATATAATCCAGACACTTGTCCTGAGGTTGGATTCTTTGATGTGTTGGGGAATGACAGG	out-of-frame	KTVDISDLATKLLDSWKDLK|kkmakhfiqlmk	.
TALL016	ACBD3	SETD2	-/-	-/-	1:226186390	3:47098081	splice-site	splice-site	translocation	upstream	downstream	0	1	0	89	113	low	.	.	.	TGGAGGAGTTGTACGGCCTGGCACTGCGCTTCTTCAAAG|AAAAGAAGCCCAGAAATGTTTCTGCGGATCAGCCAATTGCCGGGGTTACCTGGGAGGAGAAAACAGAGTCAGCATCAGAGCAGCAGGAGGGAAAATGAAGAAGG	out-of-frame	EELYGLALRFFK|ekkprnvsadqpiagvtweektesaseqqegk*	.
TALL016	ACAP2	IKZF1	-/-	+/+	3:195442795	7:50319048	splice-site	splice-site	translocation	upstream	upstream	0	1	0	38	369	low	.	.	.	CTGAAGGACTCGCCCCGCTTCAG|ATAACCTGAGGACCATGGATGtTGATGAGGGTCAAGACATGTCCCAAGTTTCAG___GGAAGGAAAGCCCCCCTGTAAGC...AGATGAGGGCGATGAGCCCATGCCGATCCCCGAGGACCTCTCCACCACCTCGGGAGGACAGCAAAGCTCCAAGAGTGACAGAGTCGTGG___TTACATAcGGG	out-of-frame	LKDSPRFr|*	.
TALL016	IGF2R	ZFAS1	+/+	+/+	6:159969395	20:49279104	splice-site	splice-site	translocation	downstream	upstream	0	1	0	41	2654	low	.	.	.	CGCAGGCCCAGGCCGCCCCGTTCCCCGAGCTGTGCAG|GTTAGAGCAGCCAGCGGGTACAGAATGGATTTTGGAAGAGGGAGTCACCACTGGACCTCCAgtGAAGCCACGTGCAGACATCTACAACCTTCGATCTCCTGACGA___GTTTATTGTTGGCCAAAACCAGGCTTTGATTGAACCAGGATGAATGCGGG	out-of-frame	QAQAAPFPELCr|leqpagtewileegvttgppvkpradiynlrspdefivgqnqaliepg*	.
TALL016	ZFAS1	IGF2R	+/+	+/+	20:49279208	6:160062532	splice-site	splice-site	translocation	downstream	upstream	0	1	0	2541	240	low	.	.	.	GGAAGCCACGTGCAGACATCTACAACCTTCGATCTCCTGACGA|GGCTCACCAGCATTTCAGgTTCAGGATGGTTGTGAGTACGTGTTTATCTGGAGA...GAGGTGAAAGACCCAAGGCATGGCAACTTGTATGACCTGAAGCCCCTGGGCCTCAACGACACCATCGTGAGCGCTGGCGAATACACTTATTACTTCCGG	.	.	.
TALL016	C5orf24	MYO18B	+/+	+/+	5:134855327	22:25823505	splice-site	splice-site	translocation	downstream	upstream	1	0	0	178	95	low	.	.	.	AAGAATCTCAACCGATCTGGTAAGCGTGGCCGGCCTTCGGGAACCACCAAATCAGCAGGATACCGGACCAGCACAGGCAGACCCCTGGGAACCACCAA...CCTTTGGGGACAACTAAAGCTGCGGGATACAAAGTCAGCCCAGGCAGACCTCCAG|TGGGTCGGAAGCAGTTCATGAGGTTTGAGTGGGCAAACTACGCAG	in-frame	PLGTTKAAGYKVSPGRPP|vGRKQFMRFEWANYA	.
TALL016	MED23	KIAA1429	-/-	-/-	6:131619827	8:94514951	splice-site	splice-site	translocation	upstream	downstream	0	1	0	142	136	low	.	.	.	GGATACCTTCAGGCCCACAGCAAGGATAAACTCCATTTGTG|AACTTGGCAAGTGGCTTGAACCTCTGAAAAACCTTAGATTTGAAATTAACTGCAT...ATGTTAAGCAG___AATATCGATAACTTGATGACCCCAGAAGGAGTTGGCCTTACCACTGCCTTACGTGTTCTCTGTAATGTTGCATGCCCACCACCTCCTG	in-frame	DTFRPTARINSIC|eLGKWLEPLKNLRFEINC	.
TALL016	MED23	KIAA1429	-/-	-/-	6:131598287	8:94491909	splice-site	splice-site	translocation	upstream	downstream	0	1	0	214	114	low	.	.	.	TGGAAGTATAACATTGTTACACTGGACAGATTAATTCTCTGCCTG|TGGAAAATCTGAATACATTGAACCTGCCAAAAGAGCTCATGTTGTGCCACCACCAAGAGGAAGGGGCAGGGGAGGATTTGGACAGGGTATACGAC	out-of-frame	WKYNIVTLDRLILCL|wki*	.
TALL016	PLEKHA2	RNF122	+/+	-/-	8:38901446	8:33558771	splice-site	splice-site	inversion	downstream	downstream	0	1	0	41	278	low	.	.	.	CCCCGCCCGATGTAACGCGCCCCGCCCGAGCCCCGGCCCCTGCACGGGGGGG|GGTGTTTCTGTGGCCTGGGACTGGTTAGCACCAACAAGTCCTGCTCGATGCCACCCATCAGTTTCCAGGACCTTCCGCTCAACATCTATATGGTCATCTTCGG	.	.	.
TALL016	TRABD	BRD1	+/+	-/-	22:50190648	22:49794294	splice-site	splice-site	inversion	downstream	downstream	0	1	0	156	152	low	.	.	.	CGCTGCTCTAATGGTCCGGACTTCCGTGT|TGGACAGGTTGCTGGACCCCGCCAACAGAGCCCACCTGGGCCTGGAGGAGCAGCTGAGAGAGCTGCTGGACATGCTCGACCTCACCTGCGC	.	.	.
TALL016	CALM1	WDR37	+/+	+/+	14:90397154	10:1124218	splice-site	splice-site	translocation	downstream	upstream	0	1	0	232	188	low	.	.	.	CGCAGGCGGCGGCGGCGGCATAGCGCACAGCGCGCCTTAGCAGCAGCAGCAGCAGCAGCaGCATCGGAG|CACTGTGACTTCTGCCGTGTTCACCGTGGGAGACAACGTGGTTTCAGGCAGCGATGACCGCACGGTGAAAGTCTGGGACTTGAAAAATATGAGATCCCC	.	.	.
TALL016	SRSF5	ZNF768	+/+	-/-	14:69767251	16:30526051	splice-site	splice-site	translocation	downstream	downstream	1	0	0	1651	63	low	.	.	.	GGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCCCGTCCG|GCAACATGAGTGAGAATGAGGAAGAGGAAATTTCTCAGCAAGAAGGCAG	.	.	.
TALL016	SRSF5	ZNF747	+/+	-/-	14:69767251	16:30526051	splice-site	splice-site	translocation	downstream	downstream	1	0	0	1651	63	low	.	.	.	GGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCCCGTCCG|GCAACATGAGTGAGAATGAGGAAGAGGAAATTTCTCAGCAAGAAGGCAG	.	.	.
TALL016	KLHL6	KLHL24	-/-	+/+	3:183508059	3:183650296	splice-site	splice-site	inversion	upstream	upstream	0	1	0	79	188	low	.	.	.	CAGAGGTCTTCCCGCTGCTCCAGGAAGCCAGGATGTACCACCTTTCTGGCAATGAG|CCACATAAAGAAGATCCCTAATAGTCATTTCTCAACAATTATAT...ACTAAGCGAAAAGTTTTTGAAATGGACCCCAAATCTCTGACAGGTCATGAGTTTTTTGACTTCTCTTCAGGATCATCCCATGCCGAAAACATACTCCAG	out-of-frame	EVFPLLQEARMYHLSGNE|phkedp*	.
TALL016	KLHL6	KLHL24	-/-	+/+	3:183555361	3:183643480	splice-site	splice-site	inversion	upstream	upstream	1	0	0	123	157	low	.	.	.	TGGAAACCCTGCGAATGGAAAACGCTCTGACAGATGTCATCTTGTGTGTGGACATTCAGGAATTCTCCTGCCACCGCGTGGTGCTTGCCGCAGCCAGCAACTATTTCAG|GTGTGGAAATTAAAAGAACACACATATTTTGACTGGGGCTTTGATCAACCAAATGCTAAAAAG___CCACATAAAGAAGATCCC	out-of-frame	ETLRMENALTDVILCVDIQEFSCHRVVLAAASNYFr|cgn*	.
TALL016	PFKFB3	RBM17	+/+	+/+	10:6226365	10:6101271	splice-site	splice-site	duplication	downstream	upstream	0	1	0	193	628	low	.	.	.	CCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|AGCCAAAGGACGAAACAAAGTACAGTCCTCGCCCCAGTCATTGACCTGAAGCGAGGTGGCTCCTCAGATGACCGGCAAATTGTGGACACTCCACCGCATGTAGCAGCTGGGCTGAAG___GATCCTG	in-frame	TSAALPSCLPPEVPTQLPGQ|SQRTKQSTVLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDP	.
TALL016	TIMM17A	PTPRC	+/+	+/+	1:201957574	1:198728340	splice-site	splice-site	duplication	downstream	upstream	0	1	0	222	2473	low	.	.	.	CCACAGACTACGAGGGAGTTTGACAGCTATTAAAACCAGGGCTCCACAGTTAGGAG|ATAATTCTAAGGCACTGATAGCATTTCTGGCATTTCTGATTATT...CCTG___CAATTTAGATGAACAGCAGGAGCTTGTTGAAAGGG___CATAGAAAATGGGGAAGAACATTCTAGTAGAGAGAACAATATAAAGCCCAGAAGAGATCTG	in-frame	HRLRGSLTAIKTRAPQLG|dNSKALIAFLAFLI	.
TALL016	PTPRC	TIMM17A	+/+	+/+	1:198639137	1:201969469	splice-site	splice-site	deletion	downstream	upstream	0	1	0	343	297	low	.	.	.	GAAATTGTTCCTCGTCTGATAAGACAACAGTGGAGA|GTCCTCAGTTTGCAGAAGACCCCTCCCAGTTGCCTTCAACTCAGTTACCTTCCTCACCTTTTGG...AAGTTACAGTCTGTTTTTAAAACCATAGGTGGGACAGCTATGGCCAATAGGCTATAAAGAGACATTTAGCACTTTTTTCTATTTAAAGGAACAAGCGGGG	.	.	.
TALL016	WDR45B	FOXK2	-/-	+/+	17:82648274	17:82571724	splice-site	splice-site	inversion	upstream	upstream	1	0	0	185	108	low	.	.	.	GGGACCAGGCCGCCGTCCCCAGCGAGAGGCATGCAGCGCTGAGGAGCGGCGACCCAGCACGGCGGCGCCATGAACCTCCTGCCGTGTAACCCTCACGGCAACGGGCTGCTCTACGCCGGCTTCAACCAGGACCACG|GATGATTCAAAGCCGCCTTACTCCTACGCGCAGCTGATAGTTaAGGCGATT	out-of-frame	MNLLPCNPHGNGLLYAGFNQDH|g*	.
TALL016	WDR45B	FOXK2	-/-	+/+	17:82648274	17:82601303	splice-site	splice-site	inversion	upstream	upstream	1	0	0	185	76	low	.	.	.	CAGGCCGCCGTCCCCAGCGAGAGGCATGCAGCGCTGAGGAGCGGCGACCCAGCACGGCGGCGCCATGAACCTCCTGCCGTGTAACCCTCACGGCAACGGGCTGCTCTACGCCGGCTTCAACCAGGACCACG|CCGCGGgGAGTCCTTTGCACATGTTGGC	in-frame	MNLLPCNPHGNGLLYAGFNQDH|aAgSPLHML	.
TALL016	SUMO3	PTTG1IP	-/-	-/-	21:44817948	21:44861271	splice-site	splice-site	duplication	upstream	downstream	0	1	0	214	496	low	.	.	.	GCGTGACTCGCCCGCTCCGCGCTGCTTCCCCCGCGCCGCCTCCCCGCGCCGCTCGCGCAGCCATGTCCGAGGAGAAGCCCAAG|TGTCTTTGGTGCAACAC...GACTACCCAGTTACAAGCGTCTTGCCACCGGCTTCCCTTTGTAAATTGAGCTCTGCACGCTGGGGAGTTTGTTGGG___GCCTGTTTAAAGAAGAAAACCCGT	in-frame	MSEEKPK|CLWCN	.
TALL016	SUMO3	PTTG1IP	-/-	-/-	21:44813976	21:44851627	splice-site	splice-site	duplication	upstream	downstream	0	1	0	488	1233	low	.	.	.	CGCCGCTGAGCAAGCTGATGAAGGCCTACTGCGAGAGGCAG|GCCTGTTTAAAGAAGAAAACCCGTATGCTAGATTTGAAAACAACTAAAGCGCTCCAGCACATCAGTCCCGACGCTTCCTGTGAGGTGCACGCTCCGCAGCCCAGCCCAG	in-frame	PLSKLMKAYCERQ|ACLKKKTRMLDLKTTKALQHISPDASCEVHAPQPSP	.
TALL016	SUMO3	PTTG1IP	-/-	-/-	21:44817948	21:44851627	splice-site	splice-site	duplication	upstream	downstream	0	1	0	214	1233	low	.	.	.	CCCCGCGCCGCTCGCGCAGCCATGTCCGAGGAGAAGCCCAAG|GCCTGTTTAAAGAAGAAAACCCGTATGCTAGATTTGAAAACAACTAAAGCGCTCCAGCACATCAGTCCCGACGCTTCCTGTGAGGTGCACGCTCCGCAGCCCAGCCCAGCCGGGAGACCACGTGGCCATTGCGGTCTCCTGACCTTGGCCAGTGAAC	in-frame	MSEEKPK|ACLKKKTRMLDLKTTKALQHISPDASCEVHAPQPSPAGRPRGHCGLLTLASE	.
TALL017	PTEN	RNLS	+/+	-/+	10:87925557	10:88278950	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	65	29	34	479	141	high	.	.	duplicates(14),low_entropy(5),mismappers(9),mismatches(1)	CGGAAGCTGCAGCCATGATGGAAGTTTGAGAGTTGAGCCGCTGTGAGGCGAGGCCGGGCTCAGGCGAGGGAGATGAGAGACGGCGGCGGCCGCGGCCCGGAGCCCCTCTCAGCGCCTGTGAGCAGCCGCGGGGGCAGCGCCCTCGGGGAGCCGGCCGGCCTGC...GGTCTCTCCCCTTCTACTGCCTCCAACACGGCGGCGGCGGCGGC-GGCACATCCAGGGACCCGGGCCGGTTTTAAACCTCCCGTcCGCCGCCGCCGCACCCCCCGTGGCCCGGGCTCCGGAGGCCGCC...GTCGCTGCAACCATCCAGCAGCCGCCGCAGCAGCCATTACCCGGCTGCGGTCCAGAGCCAAGCGGCGGCAGAGCGAGGGGCATCAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGAAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCT___ATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAG___GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT|ATATTTACTGAGTAACTCCTATGTGCCAGGTCCCACTTTTGTGGCTATTGCAATTTTGGCAGAAAGCAGATATTGAACAA___TGTCTTTGTGTGCATGAGTGGGTTTGTGGGAGGTGAAGAGCAGAGGG...___CTTCTTCTAGGAAAGCACTCTGAAGCCAAGTTGAAACATTATACTCTCAGGCAGTAGTAGAGATCAACCTCTTAAAACCAAATCCATGGGCCCAGGAGTATG___GAAAAGAGTTCAATAAAATGGCCTTAACTGGTATAAGAAGTTACAATTGTTAAAAGGAGATTCAGCTGTGATAGCAAAAGAGAAAGAAAATGAAAAAGTTGTCCTGGCTCATCTCTGGAAAGACATGATATTTCATAACCTCAAG___AATTA	out-of-frame	MTAIIKEIVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNl|yllsnsyvpgptfvaiailaesry*	.
TALL017	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	28	46	17	171	154	high	.	.	duplicates(8),low_entropy(4),mismappers(1),mismatches(5)	GGCCGGCGTGTGCGTTGCCGCAACCCCGCGTGGGTTCCACAAAAGGCGGCCCCGAGTCTCCGGGTCACG___...GAAATCTCCCCCTCG___...CAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGC	.	.	.
TALL017	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	25	50	10	177	108	high	.	.	duplicates(4),low_entropy(1),mismappers(2),mismatches(2)	CTTCACG___GCGGAATTCTCCACGAGTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG___...GTTGGGGCGGGGAGGAGGTGCAGGGCCTGGCCAGAGCGGGCCTGGCCACGGGCAAGGGACAGCGACCCCCGGGCCAGGACAGGTGAGAGCGGCGCAGGCCCGGGCCCGGCGTGGCGGAGGTGCGCGTGAGCGGCCAGCAGAGGGC...___...GCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAA...CGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCC	.	.	.
TALL017	TPST1	TYW1	+/+	+/+	7:66292624	7:67183126	intron	splice-site	deletion	downstream	upstream	4	8	0	17	98	high	.	.	duplicates(3),mismatches(2)	CGGGCGCCCCTCCCCCAGCCTCGtTGCCGCCcTGCAGTTTGATCTCAGACTGCTGTGCTAGCAATCAGCGAGAcTCCGTGGGgGTAGGACCCTCTGAGCCAGGTGTGGGATATAGTCTCGTGGTGCGCCGTTTCTTAAGCCgGTCTGAAAAGCGCAATATTcGGGTGGGAGTGACCCGATTTTCCAG|CAACAACGAACTGTCTACAGACTGACGCTCGTGAAAGCATGGAAtGTGGACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGaAATCCTGACTTCATCGAAGTGAAG___GGCGTTACCTACTGCGGAGAAAGTTCAGCAAGCAGTCTTACCATGGCCCACGTGCCCTGGCATGAGGAAGTGGTACAGTTTGTCCgCGAGcTGGTGGATCTGATCCCCGAATATGAAATTGCATGTGAACACGAACACTCTAATTGCCTCCTGATAGCACACAGAAAG___TTTAAAATTGGTGGTGAATGGTGGA	.	.	.
TALL017	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	5	5	1	236	50	high	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(3)	GGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAgTCCTGGCAAGACGGATCACTCGGAACAAG___C...GCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCC	.	.	.
TALL017	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	4	43	50	medium	.	.	mismappers(4),mismatches(1)	GGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGG	.	.	.
TALL017	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	3	95	50	low	.	.	mismappers(3),mismatches(1)	AAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCAT	.	.	.
TALL017	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	5	0	0	20	50	low	.	.	low_entropy(3),mismappers(11),mismatches(1)	ATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___...GGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGT	.	.	.
TALL017	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	14	2	128	432	medium	.	.	duplicates(2),low_entropy(1)	CGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGcTG...AG___AATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL017	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	28	432	low	.	.	read_through(12)	CACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL017	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	11	5	0	733	87	medium	.	.	duplicates(1),low_entropy(2),mismappers(4),mismatches(1)	ACCAGATCTCCGTCAAGTGCAGTAACCAGTTCAAGTTGGAAGTGTGTCTTTTGAATGCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGAAACTAGCCTGGC	.	.	.
TALL017	CD1B	CD1C(1408),CD1B(32913)	-/-	./-	1:158329852	1:158295038	splice-site	intergenic	deletion/read-through	upstream	downstream	5	10	0	5593	30	medium	.	.	duplicates(3),low_entropy(1)	AGTAAGCTTCCTGAGGGGAGCTCTAGGAGGATTGGATTTCCTGAGTGTCAAGAATGCTTCATGTGTGCCTTCCCCAGAAGGTGGCAGCAGGGCACAGAAATTCTGTGCACTAATCATACAATATCAAGGTATCATGGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|GTCACAGGGTGACTAAGGGTGCAGGAGAGTCACCTAGGGCCTCCTGGTGCCAAGGAAATGAGCAATGGAAGCAGGACCCAAGCTGG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCTGGGCAATGGAATGTGTGGTGTTGGAAGCATTAGCCAGCTCCAGTCCTGACCACTGAAAATATCACATCTGATCATCTTACCCTGTGGTACCAACTTGGCAGTCAAATTTCTAAATGGCAAGACTATGAGATGGAGAAGAGCAGC	out-of-frame	VSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQRQ|ghrvtkgagespraswcqgneqwkqdpswercncpis*	.
TALL017	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	5	6	0	2851	181	medium	.	.	duplicates(1)	TGGTGGTGTTGTCACAGTGAGGCTCTTTGGGCTGTGCGGCACCTCATGACCATATTGGCTACACCCATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTTGACCCTGTGAGACCCTAAGGACCCAGCCCTCTC	out-of-frame	wwcchsealwavrhlmtilatpivfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssiclhfdpvrp*	.
TALL017	RP11-460N20.4	RP11-479O9.2	+/+	+/+	7:65078780	7:65773650	exon	exon	deletion	downstream	upstream	2	3	0	32	34	medium	.	.	mismappers(2)	GGCATTATGGGATAACGATTGTGTAAAGAAACAGCTTCTTCATTCCTG...GCCAGGTGGGAGATTCCTGATGGGAACAAATTCTCCAGATGACAGAGATGGTGAAGGCCCTGTGTGGGAGGCAACAGTGAAACCCTATGCTATCGACATATTTCCTGTCACCAACAAAGATTTCAG|AGACCAAAGACCAACgAACTACCACAGCCACCAGTTCCGGAACCTGCCAATGATGGGCAAtGGAAAGTGAGGGAGTTCAACTCTG___TTTTCAGAGAAaTGGAATAATCATATCGCTGATCTATGTAAACAAGTTGAAGAATTG...GTTTCGCTTTTGTTGTTCTGGCTGGAGTGCAATGGCGCAATCTCGGCTCACCGCAACCTCCGCCTCCcAGGTTCAAGCGATTCTCCTGCCTCAACCTCCAGAGTAGCTAGGACTAtAGGTGTGCACCACC	.	.	.
TALL017	GUSBP9	RP11-497H16.7(2323),RP11-497H16.8(13562)	-/-	./-	5:71202253	5:70481538	splice-site	intergenic	deletion	upstream	downstream	4	0	0	51	96	medium	.	.	low_entropy(1),mismappers(6),mismatches(1)	CTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGC...CTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCGGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGCTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTTCAAGATGAAAATGGACCAGCCGCAGTGGCTCAC	.	.	.
TALL017	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	0	2	4	154	medium	.	.	low_entropy(1),mismappers(2)	GGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATC...ACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAG	.	.	.
TALL017	KLRB1	RP11-705C15.5	-/+	+/+	12:9607802	12:9653683	CDS	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	2	0	283	153	medium	.	.	mismappers(1)	TTTAAAGCCATAAATGTAACAGGAAGATCTAATTCTGGAAGACATACAAATGCCGAAAGGAAAATTAAAGCCACTTACCCCGAGGAAGAGATGAAGGTGAAGAACTTTCTGGGCCTGAGTCTGTGG|ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAG___AATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAATCATCCCATCGCATTTGGAAATGGACAGAC	.	.	.
TALL017	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	9	0	39	21	low	.	.	duplicates(1)	GTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGG...CCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGC	.	.	.
TALL017	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	85	21	low	.	.	.	GTGACCTTCTCCCAGGACGAGTGGGGGTGGCTGGACTCTGCTCAGAGGAACCTGTACAGGGATGTGATGCTGGAGAATTATAGGAACATGGCTTCCCTGG___TGGGACCATTCACCAAACCTGCTCTGATCTCCT...GGGGCCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAG	out-of-frame	GLNMQAAQPKGNPVAAPT|gmsrgqfgqgqepldmffwvneisg	.
TALL017	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606353	intergenic	intron	deletion/read-through	downstream	upstream	1	5	2	104	117	low	.	.	low_entropy(1),mismatches(1)	.	.	.	.
TALL017	RP11-726G1.1	KLRB1	+/+	-/+	12:9584164	12:9594814	intron	3'UTR	deletion/read-through/5'-5'	downstream	upstream	1	0	6	104	88	low	.	.	.	AATACACAGTAGATGTGGAAGGACACGGTTGTACATTTATCCAG___GCCACCCTTAAGTACAATGTTCTCCTACCTAAGAAGGCATCTGGATTTTCTCTTTCCTTGGAAATAGTAAAGAACTACTCTTCGACTGC...ACCAGGAAAACTGCTGCTTGTGTTATCAAGAATTTAAAG|GTTCATTGCAGCATCCAATTCCAGGTCTCTGGCGATAAGAGCTATTTTCTTGCCCTcGTATGACTCGGATAGCCCTCCCAGAGGAATCTTCACG	.	.	.
TALL017	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	5	1	33	15	low	.	.	low_entropy(1)	GGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCcTCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGC	.	.	.
TALL017	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	4	1	1	262	17	low	.	.	.	GCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAG...GGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCcAGCGCCCcCCG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgp	.
TALL017	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	3	99	309	low	.	.	.	GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCC	out-of-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL017	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	1	133	309	low	.	.	low_entropy(1)	CTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCT...ATCTTGGACGAGTATATGGGGACAGCTTGGTGGTGGTCTTAGCTACAGCAATAGCTTTGCTAGATATTTGTTTTATCCTTGTTGCTGTGCCAGAGTCGTTGCCTGAGAAAATGCG	in-frame	LVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFL	.
TALL017	KLRB1	RP11-705C15.2	-/+	+/+	12:9607802	12:9633425	CDS	exon	deletion/read-through/3'-3'	downstream	upstream	1	4	1	283	96	low	.	.	mismappers(2)	CAGGAAAGTGCCAGTTTCAACAAATG___CAATGATTTAAAGCCATAAATGTAACAGGAAGATCTAATTCTGGAAGACATACAAATGCCGAAAGGAAAATTAAAGCCACTTACCCCGAGGAAGAGATGAAGGTGAAGAACTTTCTGGGCCTGAGTCTGTGG|ATGGGTTCTCTACCTGGCCTGTGCCTTGTTGCCTGTTCCTTTACTGTACATGTGATGACAAGAAAAGAAGATGGACCCTCCATGTTGAACATGCCTGGCCCTCAG___ATAAAACTCTGCAAAGACAATGTCTAGCACTTAT...GTGCCTTCCTGAATGACAATGGAGTCAACAGTGGCAGAATCTACATGAACAGAAAATGGATTTGTAGCAAGCCAAACAATTATGTCTACAGTTGCCAGTTATGTCCCCACTGGGATACTACCTAGTAGAGC	.	.	.
TALL017	ANKRD7	ANKRD7(17106),AC006926.1(202662)	+/+	./+	7:118239998	7:118259837	splice-site	intergenic	deletion/read-through	downstream	upstream	3	2	0	13	6	low	.	.	.	ATTCGTTATAATACTGTTCTTCACTATGCTGTTTGTGGTCAAAGTTTGTCATTAGTTGAAAAACTGCTTGAATACGAAGCTGATCTTGAAGCGAAAAATAAG___GATGGGTATACTCCACTATTAGTTGCCGTT...GAACCACCATGTTTAGTAAAGCTTCTTCTTCAGCAAGGTGTGGAATTATGTTACGAAGGTATTGTGGATTCACAGCTGAGGAATATGTTTATTTCCATGGTTTTACTGC___ATAGATACCCACAATTCACTGCGAGCCATGGAAAGAAGAAACATGCTAAATAGACACCTTATTCTTGGCACTACATGTGACTAAAGGAAG|TTTGGAGCTTATTCTTGGGGACTATTCTAAGCCTGAGGAACCAACAACCCAAG___GTACTAGGCTCTTGGAGCCTTACATTCTTCACATTTAGAAG___AGTCTCACTCTGGTAACCCAGGCTGAGTGCAGAGGTACAATCATGGATCACTGCAGCCTTAACCTTCTAGGTTAAATCAATCCTCC	out-of-frame	EPPCLVKLLLQQGVELCYEGIVDSQLRNMFISMVLLHRYPQFTASHGKKKHAK*tpyswhym*lke|vwslflgtilslrnqqpkvlgswsltfftfrrvslw*	.
TALL017	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	2	1	48	6	low	.	.	.	TGAACATCTTTCAGAGTTGTATCC___TAAACAAATCCGAGCTATGCTGGGCCAGTTCAGCCAGGCAGAAGCCTTATTAATGAAAGCTGGAGTGCAGCCAGGAACTTTTGATGGAGTTCTTATGGATCTTGGGTGT...GGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAgGAAAAATGGAGG	out-of-frame	GRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL017	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	1	3	1	11	10	low	.	.	mismappers(1),mismatches(1)	AGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAACACGGGACTATGAGGATGTGAATGAAGAAGATCT	.	.	.
TALL017	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	1	4	0	10	11	low	.	.	.	CAGATATTGATATTTTTGTTGATGGAAAACGTTTTAAAGCTCACAG___GGCCATTTTGAGTGCCAGATCTAGTTATTTTGCTGCAATGCTGAGTGGCTGTTGGGCTGAAAGaTCCCAAGAGTACGTT...CAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTAC	out-of-frame	RFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalll	.
TALL017	CD1B	CD1E	-/+	+/+	1:158331459	1:158354377	5'UTR	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	3	1	3140	4114	low	.	.	duplicates(2),mismappers(14),mismatches(30)	CTAGTCCCAACCACCAGAATGGTTGAAGAGGGCGGGAGACAGAAAGACCCAGACCCTTAGTGTCCAATTGCACCTAGGAAAGCCCTGCTTGCTTTTTAAAATCCAAACCCCTGCACCAGTGCTGGGAGCTGCCAGAGTGACTCTTACCATGTTCACTGTTACCACCAGGAAAGAGAACAGCTAACAGTTGAAATGGCAGCAGCAGCATTTCACTGGGAGATGCAACTTCTTACTGGCAGAGCTG|CTCCCCAGGCTCTACAATCCTATCATCTAGCAGCAGAGGAGCAGCTGTCCTTCCGCATGCTCCAAACTTCCTCCTTTGCCAACCACAGCTGGGCACACAGTGAGGGCTCAGGATGGCTGGGTGACCTGCAGACTCATG...CCAGTTATACTTCCATAGTTTTATCCgGATAGTGCAAGCTTCTGCTGGTCAATTTCAGCTTGAAT___ACCCCTTCGAGATCCAGATATTAGCTGGCTGTAGAATGAATGCCCCACAAATCTTCTTAAATATGGC	.	.	.
TALL017	DNAH11	EEF1A1P6	+/+	-/+	7:21901158	7:22510533	CDS	3'UTR	deletion/5'-5'	downstream	upstream	0	0	5	301	2483	low	.	.	duplicates(1),low_entropy(2),mismatches(12)	GCAGGAACCATTGTTGAAGCCCGTCTCAAGGAGCTGGCATGCCCTATGCCGGTCATCTTTGCAAAAGCCACCCCCGTGGACAGACAAGAAACCAAACAGACCTACGAGTGCCCTGTGTATAGAACCAAACTG...|...GGCCAATTGAAACAAACAGTTCTGAGACCgTTCTTCCACCACTGATTAAGAGTGGGGTGGCAGGTATTAGGGATAATATTCATTTAGCCTTCTGAGCTTTCTGGGCAGACTTGGTGACCTTGCCAGCTCCAGCAGCCTTCTTGTCCACTGCTTTGATGACACCCACCGCAACTGTCTGTCTCATATCACGAACAGCAAAGCGACCCAAAGGTGGATAGTCTGAGAAGCTCTCAACACACATGGGCTTGCCAGGAACCATATCAACAATGGCA	.	.	.
TALL017	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	3	1	0	10	11	low	.	.	.	GTACGTTACTCTTCAAGG___TATAAGCCATGTAGAACTGAATGTTATGATGCATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACTAATGTTGG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCA	out-of-frame	YVTLQGISHVELNVMMHFIYGGTLDIPDKTNVGLFPEH*RLY*NA*LLLIQLEWKVFLLTA*SGL*SILQGFGLREALQIYLLRFRKVVLIC*FSP*|mirmllff*	.
TALL017	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606325	intergenic	intron	deletion/read-through	downstream	upstream	2	0	2	104	118	low	.	.	.	.	.	.	.
TALL017	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	3	1	0	15	140	low	.	.	.	CTGCCTTCCATAGATAAGCTGATGGACAGGATGCTGCCAGAAGCGTCTCCAAGGCCTTCAAAATGCCAAGGCGACTCCAGCATTTCTTCTCTCCTGCCACCTGCCCACGCACCAGCCGGAACCACAGGGTACT...CCAGGGGCCAAGGTTAGGCCCATGGTCATGAGATGCTCCCAGAGACCACCTCAGGATGGGGGCTTCCTTCCTGACTTCAGCACAGCAGCACCTGTCACCACTCACCTCAAGAGGTGaCTCCCGAGCCTCCTGG...GTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCAGCCTGCTCTTCC	.	.	.
TALL017	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	53	84	low	.	.	duplicates(1)	CTTTTGCCTATTCCAGCATGGTGTACCTCTCTTAGGATACCTTTTAGCACAGGTAGCAGAATACCAGCCAGCCTCCTGTGGCTCACAGCATTAAGATATTTAATCATCTGACATTACATGAAGTCCAGTGTT...GTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTgTGCGTGGCTGAGCATCCAGTGTCCTTCG...GACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGT	.	.	.
TALL017	NUP210P1	CHCHD6	+/+	+/+	3:126671911	3:126727078	exon	splice-site	deletion/read-through	downstream	upstream	1	2	0	18	118	low	.	.	.	CTTTAAGACAACCACATACCAGGAACTGCTTTTTTTTGGTATAGAAACTATCTTTTTAAAAATTTACCCTTGACATTTGGAAACTTCATCCAGCTATGTCTGATTTGCAAATTCAG|CTGTCTGAAAACGTGGTGAACCGCATGAAGGAGCCCAGCTCTCCACCCCCTGCTCCCACATCTTCTACCTTTGGCCTTCAAGATGGCAACTTGAGAGCCCCTCACAAAG___AATCCACACTGCCCAGGTCGGGGAGCAGTGGTGGCCAGCAG...GACGCCGTGACACCTTCTACAAGGAGCAGCTGGAGCGTATTGAGAGGAAG___AATGCTGAGATGTATAAACTGTCTTCAGAGCAATTCCATGAGGCAGCCTCAAAGATGGAGAGCACAATAAA___GCCCCGCAG	.	.	.
TALL017	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87037303	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	3	0	0	56	60	low	.	.	low_entropy(1)	GTTCCACCACAAAAAGTGCAGATCAGTTAAACGGCCTGCTTCGGGAAACAGAGGCAACCAGTGCAGTCCTTATGGAGCAAATTAAG___CTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTGGACATTGTGAGGAACATCCAGCTCTGTGGACG	out-of-frame	STTKSADQLNGLLRETEATSAVLMEQIKLLKSEIRRLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|anrtsavcl*	.
TALL017	CENPK	CTD-2116N20.1(14738),CENPK(15980)	-/-	./-	5:65528473	5:65501786	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	3	244	14	low	.	.	mismappers(1)	TGAAAAGTTAAAGGAAGACTTAGAAAG___AATCTTTAATGAACTGAAAACTAAAATGCTTAATATAAAAGAATATAAGGAGAAACTCTTGAGTACCTTGGGCGAGTTTCTAGAAGACCATTTTCCTCTGCCTGAT...|...CCTTTGAAGAGGCTGAATTTCCACAGCTGCCCAGATGTCACAAAGCACTTCTGTTTCCCTACCCTGGGTGTCAAAAAGCCTGAGCAGAGAACGTGGACTTTCACCACTACCTGGTAGTGATGAGACTGTaCCC	.	.	.
TALL017	MOB1B	GRSF1	+/+	-/-	4:70902550	4:70836314	splice-site	splice-site	inversion	downstream	downstream	1	1	1	104	695	low	.	.	.	CGGCCACCGAGCAcCCGGCTCTCGGCACCTCCTCCTCCGCCTCCCTGTCTCCTGTTCCATTCGCCTTTCCTCTTCTTTCCTGGCCCACGCCGCTCCGAGGCCTCGCGACCGCCGAGCCTGCAGCCTGCCCCGCGGCCAACATGAGCTTCTTGTT|GAGTCCAAAACTACTTACCTGGAAGACCTTCCACCACCCCCTGAGTATGAATTGGCCCCGTCCAAGTTAGAAGAGGAAGTGGATGATGTCTTTCTCATTCGAGCTCAAGGACTGCCCTGGTCATGCACTATGGAAGATGTGCTTAACTTTTTTTCAG___ACTGCAGAATCCGCAACGGTGAGAATGGAATACATTTTCTCCTAA	out-of-frame	MSFLl|spklltwktfhhplsmnwprps*	.
TALL017	PTGER4(3028),TTC33(17712)	TTC33	./.	-/.	5:40696763	5:40740484	intergenic	intron	deletion/read-through	downstream	upstream	0	2	0	8	5	low	.	.	mismappers(1)	.	.	.	.
TALL017	RP11-16F15.2	SBF2	+/+	-/+	11:9660539	11:9825724	exon	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	43	4	low	.	.	mismappers(1),mismatches(2)	CGGAACCGCCATCTTCCAGTAATTCGCCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCGATATATGTTCTCTAGGCCTTTTAGAAAACATGGAGTTGTTCCTTTGGCCACATATATGCGAATCTAT...|...GTTACTTTTAAAAAA	.	.	.
TALL017	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	1	58	3	low	.	.	.	CTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAG	out-of-frame	FDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL017	RP11-299G20.2	RP11-299G20.2	+/+	+/+	15:101305458	15:101302690	exon	intron	duplication	downstream	upstream	2	0	0	2	0	low	.	.	.	GCGCTGCGGGGGATAGAATCTTCTGGTCTGGCTTTGGAATTGGACTTTCTAAGCCACTGCTGCAGTTTCAGAAGTAGCTGACTATGTAGAAATAGATACTCCGGCCCCAGTGGTCATACATTTTATGCCCT...GTGCCTGCCCTCTGTGGGCAGCTAGGCACCCTTACCCGGCCAGGAGGCACGTGCGGCAGCAGAACTGAATGAAGAGCTTCCGTTCGCACAGCCGGTTGGACTTCACCATCTCGCAGAATGTCTCGTCAGCTGG...GGTGCCTGTGAAGATTGTTTCAAGGCCGGGCGCGGTGCCTCATGCCTGTAATCCCA|AAATGCTGGGATTACAGGTGTGAGCCACCATGCCCGGCCAGGAGTTTATTTCTGATTCAGCTGCAAACATGGTAGACTGTAAGCTCTCAG	.	.	.
TALL017	RP11-299G20.2	PCSK6	+/+	-/+	15:101305458	15:101302690	exon	intron	duplication/5'-5'	downstream	upstream	2	0	0	2	0	low	.	.	.	GCGCTGCGGGGGATAGAATCTTCTGGTCTGGCTTTGGAATTGGACTTTCTAAGCCACTGCTGCAGTTTCAGAAGTAGCTGACTATGTAGAAATAGATACTCCGGCCCCAGTGGTCATACATTTTATGCCCT...GTGCCTGCCCTCTGTGGGCAGCTAGGCACCCTTACCCGGCCAGGAGGCACGTGCGGCAGCAGAACTGAATGAAGAGCTTCCGTTCGCACAGCCGGTTGGACTTCACCATCTCGCAGAATGTCTCGTCAGCTGG...GGTGCCTGTGAAGATTGTTTCAAGGCCGGGCGCGGTGCCTCATGCCTGTAATCCCA|AAATGCTGGGATTACAGGTGTGAGCCACCATGCCCGGCCAGGAGTTTATTTCTGATTCAGCTGCAAACATGGTAGACTGTAAGCTCTCAG	.	.	.
TALL017	TMPO	ANKS1B	+/+	-/+	12:98548905	12:99179214	3'UTR	intron	deletion/5'-5'	downstream	upstream	2	0	0	751	12	low	.	.	duplicates(6),inconsistently_clipped(1),low_entropy(5),mismappers(2),mismatches(13)	TAATCTCTTCTGTAACCTTTATTAATAGTAATGTTGTTGTAGCCCTATCATACTCACTTTTTAAGACACAGTATCATGAAAGTCCTATTTCAGTAAGACCCATTTACATACAGTAGATTTTTAGCAGAGATCTTTTAGTGTAACATACATATTTTAGAGAATTGTTGGCTAGCTGTACATGTTTTGAAAAGCTGTTTAGCTAGCTATAAGGCTATAATTGGAAATTTGTATTTTTTATTTACAGCAAAACATTTATTCAGTCATCCAGTTTGCTACCAAAATATGTTTTAGATAAGTGTGTGTATGTTTGTTTAGAAGTTAGAAATTGTAAACACTGGTCTTATGTTTCATTTGGATTCATTATTGCATTGTCTTGTTACCAGAAACAAATTTTGCCGAGCTTTTTTTGCCCTATATTTCCCAGCATAATTTGATTAGAAAGTACAAAAAGGGCCAGGCGCGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCAGGGCGGGTGGATCACGAG|GTCAGGAGATcGAGGCCATCCTGGCcAACAtGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGC	.	.	.
TALL017	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23232293	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	119	22	low	.	.	.	AGATGAT___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTGTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGAACGTGATGTTAGAGAACTACAGAAACCT...CATGAGATGGTGGCCAAACCCCCAG___GTATGTGTTGTTATTTTGCgCAAGACCTTCGGCCAGAGCAGAGCATAAAAGCTTCTTTGCAAAGAATAATACTGAGAAAATATGAAAAATGTGGACATCACAATTTACAGTTAAAAAAAGGCTATAAAAGTGTGGATGAGTACAAGGTGCACAAAGGAAGTTATAATGGATTTAACCAGTGTTTGACAACTACCCAG	.	.	.
TALL017	CLN8	CLN8(14102),MIR596(16557)	+/+	./+	8:1771597	8:1800674	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	0	19	1	low	.	.	.	AGAAGGTCTTCTGGGACCTGGCGGCCACGCGTGCAGTCTTTGGTGTTCAGAGCACAGCCGCAGGCCTGTGGGCTCTGCTGGGGGACCCTGTGCTGCATGCCGACAAGGCGCGTGGCCcGCAGAACTGGTGCTG...CTTTTGCTTTGAAAATGTTGCAGTCCACCTGTCCAACTTGATCTTCCGGACATTTGACTTGTTTCTGGTTATCCACCATCTCTTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGTTGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAG|GAGAGTTGGGTGATAGGAACACAAGGAGCAGAGAACGCACTGGCCTCTGACAGCCGCTCTGTGCAGATTCAGTCCTTCAGCCACCCGCAGGAATTGCC	out-of-frame	FCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLK|eswvigtqgaenalasdsrsvqiqsfshpqel	.
TALL017	ITFG1	PHKB	-/-	+/+	16:47237965	16:47641035	splice-site	splice-site	inversion	upstream	upstream	0	1	0	48	118	low	.	.	.	CTGTGTTCTAATGACTGTCCTCGTAAGATAACA|GGCCCACTGGAAAATGACTTGGTAGTTCATGTGGCACTTATAGCAGAAAGCCAAAG___ACTTCAAGTTTTTCTGAACACATATGGTATTCAAACTCAAACTC...ATGTTTTCCTGCTGATAGATGACATAAAG___AATGCGCTGCAGTTCATTAAACAATATTGGAAAATGCATGGACGTCCACTTTTCCTTGTTCTCATCCGGGAAGACAATATAAG___AGGTAGCCGGTTCAACCCCAT	in-frame	LCSNDCPRKIT|GPLENDLVVHVALIAESQRLQVFLNTYGIQTQT	.
TALL017	ITFG1	PHKB	-/-	+/+	16:47311240	16:47689041	splice-site	splice-site	inversion	upstream	upstream	0	1	0	67	146	low	.	.	duplicates(1)	CAGCAACCAACTGAAATACCAATTCCAATTACCCTTCATATTGGAGACTACAATATGGATGGCTATCCAGACGCTCTGGTCATACTAAAGAACACATCTGGAAG|GTGGATCATCCATGCCATGGAGTATGAAC...CAGATCGATGGGTCTTTGAATAGAACTCCCACCGGGTTCTATGACCGAGTGTGGCAGATTCTGGAGCGCACGCCCAATGGGATCATTGTTGCTGGGAAGCATTTGCCTCAG___CAACCAACCCTGTCAGATATG	in-frame	QQPTEIPIPITLHIGDYNMDGYPDALVILKNTSGr|WIIHAMEYE	.
TALL017	PCIF1	KDM2B	+/+	-/-	20:45934804	12:121453344	splice-site	splice-site	translocation	downstream	downstream	0	1	0	260	118	low	.	.	.	GAGGCGGCAAAACGGGCGGTCGAGCAGAACGTGTAGCCGCGTCCCCTCCAGTCCGCTCCGGGCAG|AACCGGGCTGTGGGTCGGCCCAAGGGGAAGCTGGGCCCGGCCTCCGCGGTGAAGTTGGCCGCCAACCGGACAACGGCAGGAGCTCGGCGGCGCCGGACGCGATGCCGCAAGTGCGAGGCCTGCCTGCGGACCGAGTGCGGAGAGTGCCACTTCT	.	.	.
TALL017	TMC6	BSG	-/-	+/+	17:78121013	19:579500	splice-site	splice-site	translocation	upstream	upstream	1	0	0	313	1021	low	.	.	.	TTGTGTGGCTGCTGTGTCTGGGGACCGCGCTGGGCTGCGCCGTGGCCGTCCACGTCTTCTCGGAGTTCATGATCCAG___AGTCCAGAGGCTGCTGGCCAGGAGGCTGTGCTGCTGGTCCTGCCCCTGGTGGTTGG...GTCCTGGCCGCCCTGGAGCCGCATGACTCCCCGGTACTGGAGGTGTACGTGGCCATCTGCAG|CCGGCACAGTCTTCACTACCGTAGAAGACCTTGGCTCCAAGATACTCCTCACCTGCTCCTTGAATGACAG	out-of-frame	VLAALEPHDSPVLEVYVAICs|rhslhyrrrpwlqdtphllle*	.
TALL017	TTC27	BIRC6	+/+	+/+	2:32702920	2:32543241	splice-site	splice-site	duplication	downstream	upstream	1	0	0	112	174	low	.	.	.	AAGAATAACCCAGTGCACACATTAACTGAAGTGGAGCTTCTGGCATTTACATCA___TGTTTGCTTTCACAACCAAAGTTCTGGGCCATTCAGACATCAGCCTTGATCCTCCGGACAAAACTTGAGAAAGGAAGTACTCGCCGAGTGGAACGGGCAATGAGGCAGACACAG|GTGAGTGCTCCAGTTGTAACATCTACCACTCAGGAAAAGCCGAAGGATAGCGA	in-frame	KNNPVHTLTEVELLAFTSCLLSQPKFWAIQTSALILRTKLEKGSTRRVERAMRQTQ|VSAPVVTSTTQEKPKDS	.
TALL017	NR3C1	LINC01578	-/-	+/+	5:143399656	15:92897724	splice-site	splice-site	translocation	upstream	upstream	0	1	0	176	1686	low	.	.	.	CTTGACTTCTCTGGGGACTCTGAACTTCCCTGGTCGAACAGTTTTTTCTAATGGCTATTCAAG|CACCCAGTCAGCTTGAAGAGTTTCAAATGGACCCTACCACTGAGAAATCAAGATGGCAGTCTACTATGGGGAATTGAGGAAAAATGGATTAATACAAGAGTCCTGTGATAATATACAACCAAGACAGGGTTCTTTTAACATGGATTCC	out-of-frame	LTSLGTLNFPGRTVFSNGYSs|tqsa*	.
TALL017	RBMX	FBXO7	-/-	+/+	X:136875086	22:32487745	splice-site	splice-site	translocation	upstream	upstream	1	0	0	1503	484	low	.	.	.	CTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAG___TCATTAGATGGAAAAGCCATCAAGGTGGA...AGATGGATATGGTCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATG|CTACACTAAAAATCAACAATGAGATTAGAAGTGTGAAAAGATTG	out-of-frame	MDMVVIVTIQIIQVEVPTEIHMRVM|lh*	.
TALL017	BCL11B	ANP32E	-/-	-/-	14:99231345	1:150231926	splice-site	splice-site	translocation	upstream	downstream	1	0	0	207	873	low	.	.	.	GTGCAGGCCTGCCCAGCTGCCAGCGGTGGCCCCCATAGCTGCCTCCTCCCACCCTCACTCATCCGTGATCACTTCACCTCTGCGTGCCCTGGGCGCTCTCCCGCCCTGCCTCCCCCTGCCGTGCTGCAGCGCGCGCCCGGTCTCGGGTGACGGGACTCAGGGTGAGGGTCAGACGGAGGCTCCCTTTGGATGCCAGTGTCAGTTGTCAG|GTGACAGAGTTAGTCCTTGATAATTGCCTGTGTGTCAATGGGGAAATTGAAG	out-of-frame	CRPAQLPAVAPIAASSHPHSSVITSPLRALGALPPCLPLPCCSARPVSGDGTQGEGQTEAPFGCQCQLS|gdrvsp*	.
TALL017	MEF2A	LRRC28	+/+	+/+	15:99566104	15:99386030	splice-site	splice-site	duplication	downstream	upstream	1	0	0	112	462	low	.	.	.	GTGGGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGGCTGAAAGAGGCGGCTCCGGGCGGCGCGAAGCGCTGGTGGCGGGCCCGGGCTGCGGCGTGTGCGCGCCCGCCAGCTGCTCCGGAGATACG|GAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCT	.	.	.
TALL017	SF1	DGKZ	-/-	+/+	11:64778362	11:46367291	splice-site	splice-site	inversion	upstream	upstream	0	1	0	759	549	low	.	.	.	GTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAGCGAACGCCACGCCGTTGG|GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCCCCCCCTCCGCCCACCCCTGGGGCCCCGTGCAGCGAGTCAGAGCGGCAGATCCGGAGTACAGTGGACTGGAGC___GAGTCAGCGACATATGGGGAGCACATCTGGTTCGAGACCAACGTGTCCGGGGACTTCTGCTACGTTGGGGAGCAGTACTGTGTAGCCA	out-of-frame	MATGANATPL|gkpspsrasstwpplrpplgpraasqsgrsgvqwtgasqrhmgstsgsrptcpgtsatlgsstv*	.
TALL017	SF1	DGKZ	-/-	+/+	11:64766900	11:46367291	splice-site	splice-site	inversion	upstream	upstream	0	1	0	929	549	low	.	.	.	CGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGTACCCCCTTGCCATGGCAGCAAA|GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCCCCCCCTCCGCCCACCCCTGGGGCCCCGTGCAGCGAGTCAGAGCGGCAGATCCGGAGTACAGTGGACTGGAGC___GAGTCAGCGACATATGGGGAGCACATCTGGTTCGAGACCAACGTGTCCG	out-of-frame	PPPPPSSSMASSTPLPWQQ|rkpspsrasstwpplrpplgpraasqsgrsgvqwtgasqrhmgstsgsrptc	.
TALL017	RBM25	APEX1	+/+	+/+	14:73099750	14:20455914	splice-site	splice-site	duplication	downstream	upstream	0	1	0	542	2300	low	.	.	.	ATGGAAGAAGACAAAAGAGACCTGATATCTCGAGAGATCAGCAAATTCAGAGACACACATAAG|AGCCAGAGGCCAAGAAGAGTAAGACGGCCGCAAAGAAAAATGACAAAGAGGCAGCAGGAGAGGGCCC...AAGTTTCTTACGGCATAG___GCGATGAGGAGCATGATCAGGAAGGCCGGGTGATTGTGGCTGAATTTGACTCGTTTGTGCTGGTAACAGCATATGTACCTAATGCAGGCCGAGGTCTGGTACGACTGGAGTACCG	out-of-frame	MEEDKRDLISREISKFRDTHK|sqrprrvrrpqrkmtkrqqera	.
TALL017	GRK6	DBN1	+/+	-/-	5:177435121	5:177460703	splice-site	splice-site	inversion	downstream	downstream	1	0	0	842	1549	low	.	.	.	CTACCACATGGGCCAGGCTGGCTTCCCCGAAGCGCGGGCCGTCTTCTACGCCGCCGAGATCTGCTGTGGCCTGGAGGACCTGCACCGGGAGCGCATCGTGTACAG___GGACCTGAAGCCCGAGAACATCTTGCTGGATGACCACG___GCCACATCCGCATCTCTGACCTGGGACTAGCTGTGCATGTGCCCGAGGGCCAGACCATCAAAGGGCGTGTGGGCACCGTGGGTTACATGG|GGTGACCATCGGGATGAGGAGGAAGAGA	out-of-frame	YHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYM|g*	.
TALL018	MYB	PLAGL1	+/+	-/-	6:135199050	6:143942663	splice-site	splice-site	inversion	downstream	downstream	27	38	29	972	142	high	.	.	duplicates(5)	AGACAATAAAAGAGAAGTGATGCCCA___ACACAGAACCACACAT...GAGAACACCACTCCACTCCATCTCTGCCAGCGGATCCTGGCTCCCTACCTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATTCT___TTCTTAAACACTTCCAGTAACCATGAAAACTCAGACTTGGAAATGCCTTCTTTAACTTCCACCCCCCTCATTGGTCACAAATTGACTGTTACAACACCATTTCATAGAGACCAGACTGTGAAAACTCAAAAGGAAAATACTGT|GCATATGGCTACCCATTCTCCCCAGAAATCTCACCAGTGTGCTCACTGTGAGAAGACGTTCAACCGGAAAGACCACCTGAAAAACCACCTCCAGACCCACGACCCCAACAAAATGGCCTTTGGGTGTGAGGAGTGTGGGAAGAAGTACAACACCATGCTGGGCTATAAGAGGCACCTGGCCCTCCATGCGGCCAGCAGTGGGGACCTCACCTGTGGGGTCTGTGCCCTGGAGCTAGGGAGCACCGAGGTGCTACTGGACCACCTCAAAGCCCATGCGGAAGAGAAGCCCCCTAGCGGAACCAAGGAAAAGAAGCA	in-frame	EHHSTPSLPADPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFIDSFLNTSSNHENSDLEMPSLTSTPLIGHKLTVTTPFHRDQTVKTQKENTv|HMATHSPQKSHQCAHCEKTFNRKDHLKNHLQTHDPNKMAFGCEECGKKYNTMLGYKRHLALHAASSGDLTCGVCALELGSTEVLLDHLKAHAEEKPPSGTKEKK	.
TALL018	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	10	7	2	32	49	high	.	.	low_entropy(2),mismatches(2)	CCCCGGGCTCCACGCCGCGGGCAGGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGG?CAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCG	.	.	.
TALL018	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	13	1	34	34	high	.	.	low_entropy(5)	GTCTAAGTGACCTCCCCCAGGGTTGAGAAAGAAGCTGAAGTTAACGGTTGATATCCTATGTCTTTCCTCAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCC	.	.	.
TALL018	NR3C1	HMHB1	-/+	+/+	5:143284791	5:143820480	intron	splice-site	deletion/3'-3'	downstream	upstream	5	3	1	932	9	high	.	.	mismatches(1)	CTCCAAGAACCTGGTTTGGAGTCTCACCTTCTGTGTCTCCAGTTAATACGAG___GAAGTAAGTACAGCCTGGAATTCCCCTCCTACTGGAAAACTGGACAACAAGCAATACATGATTATGATCCCTAGGAAAAGAGAAACAAATACG|GTTCTCTGtATGTTTGGAAGTCGGAATTGGTTGAAGTTGAAGATGATGTGTATCTGAGGCACAGCTCTTCCCTGACTTATAGGCTTTGACACTGCTGTTGAGGTTTGACTCGAAGCCCAGAGTTTTGGTGTGGATGAGCAGGGACAAATTGCTGAGCATGAAGAAGAGTAAAATTAAGCAAGTGGAAC	.	.	.
TALL018	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	3	2	1	31	13	high	.	.	.	CTGCCCTCCCCAAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGG	.	.	.
TALL018	ANAPC4	ANAPC4	+/.	+/.	4:25393628	4:25395483	intron	intron	duplication	upstream	downstream	1	1	1	24	5	high	.	.	.	.	.	.	.
TALL018	TMEM123	BIRC3	-/-	+/-	11:102448812	11:102328586	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	15	13	7	607	44	medium	.	.	duplicates(1),low_entropy(4),mismappers(1)	CCTGCCCTCGGAACAATGGGACTCGGCGCGCGAGGTGCTTGGGCCGCGCTGCTCCTGGGGACGCTGCAGGTGCTAGCGCTGCTGGGGGCCGCCCATGAAAGCGCAGCCATGGCGG___CATCTGCAAACATAGAGAATTCTGGGCTTCCACACAACTCCAGTGCTAACTCAACAG|GTCTTACCTACCCTGGGTCATCCTTTGGGATAAGTTGGACCCTGTATCAGTTTCATTGCTCATGGCTAGGATGGGTTTGACCATCAAACTATTAT___GCAAAGCAAGCCACTCTGTCTCCAGG...___TTATCCAGCATCAGGCCACAACAGAAGCATTTGACCTTGTCATTCACAC...ATACATTTTAAGGAAGAAATACACAATTGCACCTTTGTATAATCTTTATACATACAATGTAAACATGATGCTACAGAGTAAGCTGTGTTGAAAATTAAAA...TGGGCTTTTCAACTGCAGACTTCAATGCTTTGTTTCCAGGTGGCAGGAGAAACATCACATCTCATTACCAACAATTATTTCCCTCAAAG___TAGATCAAAG	out-of-frame	MGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANST|gltypgssfgiswtlyqfhcswlgwv*	.
TALL018	FRDAP(110396),RNA5SP388(7129)	NRXN3	./.	+/.	14:78170674	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	7	12	0	22	26	medium	.	.	low_entropy(2),mismatches(1)	.	.	.	.
TALL018	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	13	1	70	35	medium	.	.	low_entropy(4),mismatches(1)	GGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGGTCCGGGTCCCTGCGGCGG...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTG	.	.	.
TALL018	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	7	1	30	20	medium	.	.	low_entropy(3)	CAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGA	out-of-frame	QLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL018	MTAP	CDKN2B-AS1	+/+	+/+	9:21838010	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	6	2	2	127	83	medium	.	.	duplicates(1)	CTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___GACTATTTGCCACGACATTTCAAAGGATTCCAAG	out-of-frame	WALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|iwktseiklnrctpltrhldtarrwrcrscrpglapd*	.
TALL018	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	3	5	1	158	25	medium	.	.	duplicates(1),mismappers(1)	CATgAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG	in-frame	mNKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|TGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPK	.
TALL018	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	4	2	1	17	49	medium	.	.	low_entropy(1)	GGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTT[t]TTTTCGgCGCTCTCGGGATCGCTCTTCTGCCT...ATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAG	.	.	.
TALL018	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69079020	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	3	2	0	97	29	medium	.	.	low_entropy(3)	CTGAGCGTGATGACTTCATCCTGGGG___ATTCTCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGG...AAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGTAAATTATAACAAAACCCAATGGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCCCTGTCATCGAG	out-of-frame	ERDDFILGILNCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLL|*	.
TALL018	TPCN2	RP11-554A11.9	+/+	+/+	11:69079020	11:69159446	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	97	61	medium	.	.	low_entropy(1),mismatches(1)	CTCCTCTTGAAGGAAGCCTGTTTCTGATGAACCTGCTGACAGCCATCATCTACAGTCAGTTCCGGGGCTACCTGATGG...CCTGGTGCTGGATGCAGATGTGCTGCCTGCTGAGCGTGATGACTTCATCCTGGGG___ATTCTCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG|GACTTGCTGTGCTCAGATCCTCCATTCAAGAGAGCTACAGACACGGGGGTGCTGGTGAGCAGGAGCCGAGACCATCTGGGGTGGGACCGACCAAGAGTTTGAGGTGTCCAGGGGGTGACGTGAAGATGACCTATcGCAGAG...AGTCTGCACAGGGGCAGGGGCTACCGTGCTCCATTTCAGTTTGGCCTCTGTTGTATCAGCCAGAGGCCAGCAGAACTCTATGGTCACTCCCCCGTGTCAC	out-of-frame	LVLDADVLPAERDDFILGILNCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLL|dllcsdppfkratdtgvlvsrsrdhlgwdrprv*	.
TALL018	TPCN2	RP11-554A11.9	+/+	+/+	11:69085930	11:69159446	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	75	61	medium	.	.	.	GGCTCTTCCTGGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|GACTTGCTGTGCTCAGATCCTCCATTCAAGAGAGCTACAGACACGGGGGTGCTGGTGAGCAGGAGCCGAG	out-of-frame	ALPGNSSLAPANGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|tccaqilhsrelqtrgcw*	.
TALL018	TPCN2	RP11-554A11.9	+/+	+/+	11:69062990	11:69159446	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	94	61	low	.	.	.	CCAAGGTCACACACCCA___CCCCTGCGGATCCGCCGGCTTCTCCGTCCCTTCTTCCTGCTGCAGAACTCCTCTATGATGAAGAAGACCTTGAAATGCATCCGCTGGTCGCTGCCGGAAATGGCCAG|GACTTGCTGTGCTCAGATCCTCCATTCAAGAGAGCTACAGACACGGGGGTGCTGGTGAGCAGGAGCCGAGACCATCTGGGGTGGGACCGACCAAGAGTTTGAGG	out-of-frame	kvthpPLRIRRLLRPFFLLQNSSMMKKTLKCIRWSLPEMAr|tccaqilhsrelqtrgcw*	.
TALL018	MYB	MYB	+/.	+/.	6:135188760	6:135200826	intron	intron	duplication	upstream	downstream	2	0	2	107	33	medium	.	.	.	.	.	.	.
TALL018	RP11-325K4.3	DOK4(3500),CCDC102A(21351)	+/+	./+	16:56940401	16:57490827	splice-site	intergenic	deletion	downstream	upstream	3	0	0	96	5	medium	.	.	duplicates(2),mismappers(4),mismatches(4)	CAAAATTTGCGGATGAATGCACAAGGTGGCCCTATTGTGGAAGAAGATGATGAAATAAATCGAGATTGGTTGGATTGGACCTATTCAGCAGCTACATTTTCTGTTTTTCTCAGTATCCTCTACTTCTACTCCTCCCTGAGCAGATTCCTCATGGTCATGGGGGCCACCGTTGTTATGTACCTGTAAGCAGATGGTTTCTCTAATATAAATTACACTACACTGTGTTCACACTAAGCAGATTTTGCTCTTTTTGTTTCTTGTTTTTTTTGAGATGGAGTCTCGCTCTGTCATTCAGGCTGGAGTACAATGGCACAATCACTGCAATCTCCGCTTCCCAG|GTTCG?GCGATTCTCCTGCCTCAGCCTCCT	.	.	.
TALL018	BIRC2	RP11-315O6.1	+/+	+/+	11:102347376	11:102461448	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	67	23	medium	.	.	.	GGCGGGCTTCGGGAGCGCCCGGGCTGATCCGAGCCGAGCGGGCCGTATCTCCTTGTCGGCGCCGCTGATTCCCGGCTCTGCGGAGGCCTCTAGGCAGCCGCGCAGCTTCCGTGTTTGCTGCGCCCGCACTGCG|CCCTGACTCCAGTGTCTCCAGCTGAGAGGCTGAGCTTGCCAGCTCCATTTCTGACTGCTCATGGAGCAGAATCAGTGACCAAGGAGAAAAGGGCTGAGTGAAGAAACAAGTGTGAGTGCCAAGATGATGCCAAGGGCTGTGATTTCCTGGTGGGAAGAAAGAAGGAATAGAA	.	.	.
TALL018	TARBP1	TARBP1	-/-	-/-	1:234407605	1:234472095	exon	intron	duplication	upstream	downstream	0	2	1	156	9	medium	.	.	.	CAACAAAATAAAGCAGTGTTGGATCACAACCCAAAGAATAAAATAAATATCCTCGAGCCCACACCGATATAAATAAATGATTGAATCAATAAATGAGTCCAGGCACTGTGGCTCATGCCTGTAATCC|CAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGTCCAGGACTTTTGAGTTTTTTACAAGTTCCCAGGTGATATGTATGCTGCTGTTCTGGGAACTACACTTTGAGAACCATGGTTTCCATTCTGCAAGTTGGGG	.	.	.
TALL018	BIRC2	TMEM123	+/+	-/+	11:102347376	11:102424972	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	1	0	67	10	medium	.	.	mismappers(1)	CGGGCTGATCCGAGCCGAGCGGGCCGTATCTCCTTGTCGGCGCCGCTGATTCCCGGCTCTGCGGAGGCCTCTAGGCAGCCGCGCAGCTTCCGTGTTTGCTGCGCCCGCACTGCG|GAAACACTAGAGGCAGAAAACCTGTTTGTTGAAAATACAGAAGCAAGAATGAAGAATATCCTAATTTGTATCCATTTCTATTCTCAAG	.	.	.
TALL018	SNORA51(159810),RNA5SP267(158573)	TOX	./-	-/-	8:59297312	8:59119007	intergenic	5'UTR	deletion/read-through	upstream	downstream	0	5	12	84	144	low	.	.	inconsistently_clipped(3),low_entropy(2),mismappers(4),mismatches(16)	AGCAAAGTTCTCCTCTTTTCTGGGCATGTGTCATGGTTAATACTGTCAACTTGATTCAATTGAAGGATGCAAAGTATTGATCCTGGGTGTGT...TAATTTTCTAAATTTCCTAAAGTGAATTCCAGATTTTTGTTGGATTAATGAGTAAGGACTCTTCCTGACCTTTATTCCTGAGAAAGAATAACTTTAGTTT...GCTATGGGTGCTAGGGTGTTGGCTGACAACCATCCCCAGGATACTCACATTTTAACAGATTCGGGACCTTAGTTCTCAGGCTCTTCTGTAGCATGCTGGAATCATCCTGAGGGAGGTAGAAAAGGCCGTTCCAAAAATCCTAAAATTCCTGTAAC___CTAGAAATCTCCATGAATTCCTAGCTTCGAAATAACAGCAGCTACTGACATTTCCCTGATGTG|g|TttTTGccccGgGgGTGAAATGGACGTAAGATTTTATCCACCTCCAGCCCAGCCCGCCGCTGCGCCCGACGCTCCCTGTCTGGGACCTTCTCCCTGCCTGGACCCCTACTATTGCAACAAGGTGAACGCTCTGCTTTTGTTTCCACCGTGTTCTTGCTGCTTGATCCTGGGAGGGGAGCGGCGGTGGCCGGGCCGCGGCGGGGCCGGC...___TTTGACGGTGAGAACATGTATATGAGCATGACAGAGCCGAGCCAGGACTATGTGCCAGCCAGCCAG___TCCTACCCTGGTCCAAGCCTGG	.	.	.
TALL018	COX7A2L	RP11-667M19.2	-/-	-/+	2:42350692	11:113771508	3'UTR	exon	translocation/5'-5'	upstream	upstream	15	0	0	749	7	low	.	.	duplicates(13),inconsistently_clipped(7),mismappers(19),mismatches(1)	CTGATTTCCCTGGAGGTTCTGGATGAAGGCTGAACACAGGCTTGTTAATGTCAGTCTGTGCTGAGGACCTCAGGGACTTGAGGTTGCATTTTTGAGCATGGGGTGCAGGAGCCTTTCTGGATTTGGATGTGGCTATGGAAAGAACACAGAAGCCAAGGTCATGTGCATGAAATGAGGAGTTTGAGTTAGTCACCTCGGGGATTTTTTCCATTTTGCAGTAAAATGTTAAATTAATGTAGCCTGCCTCTATTTGTTGGGCAGGTAATTTCAAAGGGTTATTTGCCTCATCTCC|TATCTTCAGTGAAATCTTAtGTGTAATTGTGTGTATtTATTCCACCgTGGGA	.	.	.
TALL018	UTP3(1106),RNU6-520P(10098)	DCK	./+	+/+	4:70691657	4:70998103	intergenic	CDS	deletion/read-through	downstream	upstream	0	7	4	30	332	low	.	.	mismatches(5)	TTATGGAACACTTGCCATGTGCTAGTTGTACATCACCTCATTTAATCTTTACAATAACTTTGCAAGGTGATACTGTGCTCCACAGATGAGGATGCTGAAATTTTGGAAGGTTGACTTTCTAAAGGACATCTGCTTGAAATCTGAACCCAAACCAACTTGAGCATTCATTCTCTTAACCTCTGGCTTACtG|tcgaa|TaTGAAGATTGGGAAGTGGTTCCTGAACCTGTTGCCAGATGGTGCAATGTTCAAAGTACTCAAGATGAATTTGAGG...___GAACTTACAATGTCTCAGAAAAATGGTGGGAATGTTCTTCAGATGATGTATGAGAAACCTGAACGATGGTCTTTTACCTTCCAAACATATGCCTGTCTCAGTCGAATAAGAGCTCAGCTTGCCTCTCTGAATGGCAAGCTCAAAGATGCAGAG	.	.	.
TALL018	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	3	5	1	158	25	low	.	.	duplicates(1),mismappers(1)	CATgAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG	out-of-frame	mNKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|tgssdpycivkvdnepiirtatvwktlcpfwgeeyqvhlpptfhavafyvmdedalsrddvigkvcltrdtiashpk	.
TALL018	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102624351	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	158	6	low	.	.	.	CAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CCCCAGCTCTTCTCCTTCAAGCCCAGCTCAGGTGCCGCCTCTTCCAGGAAGCCCCCTGGGACCATCTCCAGTCTCAGTGGGAGCAGTGTGTCCTTGGTTGCTCCCAGAGTCTATAGCAGAGATCTGGAC	in-frame	KEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|PSSSPSSPAQVPPLPGSPLGPSPVSVGAVCPWLLPESIAEIW	.
TALL018	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	4	1	239	332	low	.	.	low_entropy(1)	TGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL018	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	45	332	low	.	.	read_through(6)	CCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGC...CCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAG	out-of-frame	RGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL018	UTP3(1106),RNU6-520P(10098)	MOB1B	./+	+/+	4:70691657	4:70998103	intergenic	exon	deletion/read-through	downstream	upstream	0	5	3	30	332	low	.	.	mismatches(3)	TTATGGAACACTTGCCATGTGCTAGTTGTACATCACCTCATTTAATCTTTACAATAACTTTGCAAGGTGATACTGTGCTCCACAGATGAGGATGCTGAAATTTTGGAAGGTTGACTTTCTAAAGGACATCTGCTTGAAATCTGAACCCAAACCAACTTGAGCATTCATTCTCTTAACCTCTGGCTTACtG|tcgaa|TaTGAAGATTGGGAAGTGGTTCCTGAACCTGTTGCCAGATGGTGCAATGTTCAAAGTACTCAAGATGAATTTGAG___GAACTTACAATGTCTCAGAAAAATGGTGGGAATGTTCTTCAGATGATGTATGAGAAACCTGAACGATGGTCTTTTACCTTCCA	.	.	.
TALL018	LINC01226	LINC01225	+/.	+/.	1:31523625	1:31524544	exon	intron	duplication	upstream	downstream	2	2	4	43	28	low	.	.	.	.	.	.	.
TALL018	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	3	3	1	48	48	low	.	.	duplicates(1),low_entropy(3)	CTGGAGCCATGCCAGGGGCCAAGGTTAGGCCCATGGTCATGAGATGCTCCCAGAGACCACCTCAGGATGGGGGCTTCCTTCCTGACTTCAGCACAGCAGCACCTGTCACCACTCACCTCAAGAGGTGGCTCCCGAGCCTCCTGGGAGGGAAGGGGCCATGGCAGTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCAGCCTGCTCTTCCTGGTGGCCCATCTCGCCCTCCAGATCTGCCTGCATAcTGTGCCCCGCCTGG	.	.	.
TALL018	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	4	3	0	10	12	low	.	.	.	GTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTggTCCCA	.	.	.
TALL018	TSC22D1	SMIM2-AS1	-/-	+/-	13:44436339	13:44237805	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	6	4	4	low	.	.	mismappers(2)	GAGACTTGATAATAGGTAAATGTCGGCTAAGATAGTTTCTTTAAATTTATTCGTGGGATACTTATAATAATACAGGTGAAAGATAGCCAGGCGAATTCCTTTGTCCATTGCTGAGAGATTATGGTGACATGGATGTTGTTTTTCGAAATGTTAAAAAACCTTATTTTTGCAAGTCTGGCC...|...GAATGGATCTGAAAGGTCAGAAAATACCTAAACATTTGACTCTACCCTTCAGCTCACACGTGATTGGCTGTG...GAGAAACTATTCTTTAGTCATATCTTGTTCTCAGAGCCTTTCCCCCTCTTGCAGACTGTGCCGCCACCCAAAAGCTTGAAAACACCCCAGGAAGCCATCC	.	.	.
TALL018	PPAP2B	RP4-710M16.2(67488),PPAP2B(11293)	-/-	./-	1:56496555	1:56483454	CDS	intergenic	deletion/read-through	upstream	downstream	3	2	1	35	6	low	.	.	duplicates(1)	GTGATGACAGCAAAGTCCAGGAAGCCAG___GAAGTCCTTCTTCTCTGGCCATGCCTCCTTCTCCATGTACACTATGCTGTATTTGGTG___CTATACCTGCAGGC...CCACAAGCACCATCCCAGTGATGTTCTGGCAGGATTTGCTCAAGGAGCCCTGGTGGCCTGCTGCATA___GTTTTCTTCGTGTCTGACCTCTTCAAGACTAAGACGACGCTCTCCCTGCCTGCCCCTGCTATCCGGAAGGAAATCCTTTCACCTGTGGACATTATTGACAGGAACAATCACCACAACATGAT|CTTGATTCATGGGATGCTGTCTGGGGTCCACCTTTATTGGCAAAGGAGTTTCATGACCATGATGTTATGTCTGCTCAGTTGGAAGACCCCAACATGAATCAAGACATCAGAGGAAATGAGTGCTGATCCTCCAAGAAGACAAG	out-of-frame	HKHHPSDVLAGFAQGALVACCIVFFVSDLFKTKTTLSLPAPAIRKEILSPVDIIDRNNHHNMi|lihgmlsgvhlywqrsfmtmmlcllswktpt*	.
TALL018	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	6	0	34	27	low	.	.	low_entropy(6)	CTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAG	.	.	.
TALL018	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	1	2	3	8	35	low	.	.	low_entropy(2)	CTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTG	.	.	.
TALL018	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	2	108	10	low	.	.	low_entropy(1),mismatches(1)	CACACCGGGAGAGGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAG...GAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGACCAATTAACCTGAGCTGCTGAGG	out-of-frame	HRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|elksgipgrdpeppvqppegqsilwiprevtvasrsgpgaap	.
TALL018	TSC22D1	RP11-478K15.6(1848),RP11-269C23.5(124325)	-/-	./-	13:44436504	13:44245040	splice-site	intergenic	deletion/read-through	upstream	downstream	2	3	0	15	14	low	.	.	low_entropy(5)	GAAGATGCCAGGCGTGCAGCGGAGCCCTCCTTAGTTGGCTTACCTCAGACTATCAGTGGTGACAGTGGGGGAATGTCAGCAGTTTCAGATGGGAGTAGCAGCAGCCTAGCAGCCTCTGCTTCTCTTTTCCCGTTGAAGGTGCTACCGCTGACGACACCCCTGGTGGATGGCG...CTAGCTTATACAAGGCTGCTGGTGTTCCCTCTTTTTTTCCACGAGGGTGTTTTTGGCTGCAATTGCATGAAATCCCAATGGTGTAGACCAGTGGCGATGGATCTAGGAGTTTACCAACTGAGACATTTTTCAATTTCTTTCTTGTCATCCTTGCTGGGGACTGAAAACGCTTCTGTGAGACTTGATAATAG|TGGGAAGTCTGTCCATTCCATGGAGATTATCAGCTGAAACAAGGCTGTTTCCCGTCAGACCTGCTTAAGCCATGTCAAGGTGTAAGAGTAACTGGATGCTTTACGTAAACAAAAGGACAAATGAAGGCCAAGCTGGAGTCTCACCTACCTGACTTTTACAGCA___TTGCTGAAATGCCTTTCCATAAAGAAGACAACTTCATTCAACTCTTCAATCTCAAGATTACA	out-of-frame	MKSQWCRPVAMDLGVYQLRHFSISFLSSLLGTENASVRLDNs|gksvhsmeiis*	.
TALL018	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	2	2	1	122	188	low	.	.	duplicates(1)	CTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG	.	.	.
TALL018	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	140	175	low	.	.	.	ACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCAcGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTG	out-of-frame	RLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL018	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100058666	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	140	228	low	.	.	.	ATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACG	out-of-frame	IKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|yymkpflnihf*	.
TALL018	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	186	175	low	.	.	.	AACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCT...GTGGTATTTGCATACGTAGCAGATATAACCCAAGAcCATGAAAGAAGTATG	in-frame	NRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFF	.
TALL018	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	131	91	low	.	.	mismappers(1)	CCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCCCCCACCACCAC	out-of-frame	MGLGRCIWE|gprelllcarpgpga*	.
TALL018	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	143	91	low	.	.	read_through(1)	CCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTAT...GAGCCAGCCTGTGTGCTTCCAGGCTCCCCAGAGACAAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTC...GACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTAC...CCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCcCCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGG	out-of-frame	TGPTYLLFKLSPr|sqrttsmcqtwarclrlmfhp	.
TALL018	IL9R	WASH6P	+/+	+/+	X:156007607	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	101	91	low	.	.	low_entropy(1),read_through(2)	AGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___GCCCTCTGATCCCACCCTGGGGGTGGCC...GCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG___GGTGAAGAGAATCTTCTACCAGAACGTGCCCTCTCCAGCGATGTTCTTCCAGCCCCTCTACAGTGTACACAATGGGAACTTCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGAC...CCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCcCCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGG	out-of-frame	AVSIFLLLTGPTYLLFKLSPRVKRIFYQNVPSPAMFFQPLYSVHNGNFQ|vpenyfyvpdlgqvpeidvpsylpdlpgian	.
TALL018	C5orf56	RAD50	+/+	+/+	5:132449689	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	138	157	low	.	.	duplicates(1)	GGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAGATTCGTCTGCAATTTCGTGATGTCAATGGAGAACTTATAGCTG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|dhh*	.
TALL018	RP11-499P20.2	RN7SKP189(4500),CYCSP44(114645)	-/-	./+	10:18513122	X:145061937	exon	intergenic	translocation	upstream	upstream	0	0	3	37	5	low	.	.	low_entropy(1)	GCATCTTCTCTTATTCTGTGCAACAACAATGAACCATTTCTCAGTCGGATTGTGACGTGGGACGAAAATTGGATTTTATATGACAACCACTGACAACCAGCTCAGCTGTTGGACTGAGAAGCTCCAAAGCCAAACTTGCACC...|...AAAAAAAAAAAAAAAAAAAAAAAGGTTATGGTCACTGTTTGGTGG	.	.	.
TALL018	TSC22D1	RP11-478K15.6	-/-	-/-	13:44436339	13:44237805	exon	intron	deletion/read-through	upstream	downstream	0	0	3	4	4	low	.	.	.	GAGACTTGATAATAGGTAAATGTCGGCTAAGATAGTTTCTTTAAATTTATTCGTGGGATACTTATAATAATACAGGTGAAAGATAGCCAGGCGAATTCCTTTGTCCATTGCTGAGAGATTATGGTGACATGGATGTTGTTTTTCGAAATGTTAAAAAACCTTATTTTTGCAAGTCTGGCC...|...GAATGGATCTGAAAGGTCAGAAAATACCTAAACATTTGACTCTACCCTTCAGCTCACACGTGATTGGCTGTG...GAGAAACTATTCTTTAGTCATATCTTGTTCTCAGAGCCTTTCCCCCTCTTGCAGACTGTGCCGCCACCCAAAAGCTTGAAAACACCCCAGGAAGCCATCC	.	.	.
TALL018	ANKRD7	ANKRD7(17106),AC006926.1(202662)	+/+	./+	7:118239998	7:118259837	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	9	4	low	.	.	low_entropy(1)	CCATGTTTAGTAAAGCTTCTTCTTCAGCAAGGTGTGGAATTATGTTACGAAGGTATTGTGGATTCACAGCTGAGGAATATGTTTATTTCCATGGTTTTACTGC___ATAGATACCCACAATTCACTGCGAGCCATGGAAAGAAGAAACATGCTAAATAGACACCTTATTCTTGGCACTACATGTGACTAAAGGAAG|TTTGGAGCTTATTCTTGGGGACTATTCTAAGCCTGAGGAACCAACAACCCAAGGT...___TGTTGTGGTGCTGGTGG...AGGTACTAGGCTCTTGGAGCCTTACATTCTTCACATTTAGAAG	out-of-frame	PCLVKLLLQQGVELCYEGIVDSQLRNMFISMVLLHRYPQFTASHGKKKHAK*tpyswhym*lke|vwslflgtilslrnqqpk	.
TALL018	RP11-563J2.2	PRKCQ	+/+	-/+	10:6328127	10:6433501	exon	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	31	4	low	.	.	.	TGGGTCTCCTCCCGGGAGAGAGAAGTGTACGGCTCCCAAGGTTCCTGGCAGTTTTGAAAGAGCTCTCAGCCACAGCCAGCTTTACTTTG...|...GATCACGCATCTTCTATCCTCATTTTATCTCGGTTGCCTGTTTTCAGCATAGAAAAGAAGCACCAAGTTCACG___TCCTTGCTTTGACCCAAAGAATCAGATGCACAGCTCAAAATGCACAAGGAAACCCGGGAAAGCAGCGAGAGAGGAA	.	.	.
TALL018	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	0	0	460	57	low	.	.	mismappers(3)	CTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGG...ATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAG...GGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAG	.	.	.
TALL018	ALG10	RP11-847H18.3(50755),RP11-313F23.3(42344)	+/.	./.	12:34024984	12:34107495	intron	intergenic	deletion/read-through	downstream	upstream	0	0	2	3	4	low	.	.	.	.	.	.	.
TALL018	CEMIP	CEMIP	+/.	+/.	15:80936005	15:80938363	intron	intron	duplication	upstream	downstream	0	2	0	3	7	low	.	.	.	.	.	.	.
TALL018	ANKRD36	RP11-734K23.9	+/+	+/+	2:97247628	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	274	282	low	.	.	.	CTTCAACAAAAACGAGATGATGTCTTAAACAAAGGATCAGCAACAAAAGCTCTGCTGGATGCTTCATCGCGTCACTGCACCTATTTAGAAAATGGGATGCAGGATTCAAGGAAGAAATTAGACCAGATGAGAAGTCAA|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCgGAG	out-of-frame	LQQKRDDVLNKGSATKALLDASSRHCTYLENGMQDSRKKLDQMRSQ|flhrhypkqcfttvadrpenfhlkqqselr	.
TALL018	RNASEH2B-AS1	DLEU7	-/-	-/-	13:50866109	13:50832130	intron	intron	deletion/read-through	upstream	downstream	1	0	1	90	43	low	.	.	mismappers(1)	GCCAACTCACCTAATGCGCGGCTCTCTGGGAGGTGAGAGGAAACTGGAGTACCCAGGaAAAACCCGTGCAGACATGGGCAGAATGTGCAAACTCCACGTGGTCAGTGGTCCCAGCCAGGAAGTGATTT|CAACTAAAAAAAGCCCAGGACCAGATGGATTCACAGTTGAATTCCACCAGAGGTACAAAGAGGAGCTGATACCATTCCTTCTGTAACTATTCCAAATCGTAGAAAAAGAGAGACTCCTCCTAACTCATTTTATGAGGCCAG	.	.	.
TALL018	C3orf17	CD200R1	-/-	-/-	3:113019542	3:112929507	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	126	4	low	.	.	.	CGTGGAACCGTGTGAGAATCCCTAAGGCGGGGAACCGCAGCGCAGTGACAGTGCAGAACCCCGGCGCGGCCCTTG|TTAACACTTCATGGCCTGTAAAGATGGCTACAAATGCTGTGCTTTGTTGCC...ACAgGAAAGAAACAAATGAGACCAAGGAAACCAACTGTACTGATGAGAGAATAACCTGGGTCTCCAGACCTGATaAGAATTCGGACCTTCAGATTCGT	in-frame	WNRVRIPKAGNRSAVTVQNPGAAL|vNTSWPVKMATNAVLCC	.
TALL018	REST	NOA1	+/+	-/+	4:56911536	4:56966656	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	2	0	0	50	243	low	.	.	.	CGATATGATCACTATACAGCACACCTGAAACACCACACCAGAGCTGGGGATAATGAGCGAGTCTACAAGTGTATCATTTGCACATACACAACAGTGAGCG...GAAACATTTAAGAAACCATTTTCCAAGGAAAGTATACACATGTGGAAAATGCAACTATTTTTCAGACAGAAAAAACAATTATGTTCAGCATGTTAGAACTCATACAG|AGCGTCTGCCCTGTCCAAGGAGGTGATATGCACAGG	out-of-frame	KHLRNHFPRKVYTCGKCNYFSDRKNNYVQHVRTHT|erlpcprr*	.
TALL018	HDAC4	NDUFA10	-/-	-/-	2:239298166	2:240014860	splice-site	splice-site	duplication	upstream	downstream	0	1	0	174	310	low	.	.	.	GGTCTGGCTGCTTCCGGAATACCGAGACGGGCCTCTGCTGTTCCCTGAGCTTGCTGTCAGCAAATGTTTG|GTGTGGACCACTACAACGAGGTGAAGAGCG...GCGATTACCTGCCCCCCCACCTGGTGATTTACATCGATGTGCCCGTTCCAGAGGTCCAGAGGCGGATTCAGAAGAAAGGAGAT___CCACATGAAATGAAGAT	.	.	.
TALL018	PIKFYVE	FAR1	+/+	+/+	2:208348023	11:13721730	splice-site	splice-site	translocation	downstream	upstream	1	0	0	97	539	low	.	.	.	CAAAAAGGCTTCTGGAATGTTGTCCTTCTTCAGAGGGACAGCAGGGAAAAGCCCCGATCTCTCTTCCCAGAAGAGAGAGACCTTACGTGGAGCAGATAGT...ACCAGGTTGGGCAGACaGGCAAGGAGGGGACCGAGAATCAAGGCGTTGAGCCTCAAG|GATGATGAAAACAATAACTCGTCTTCACAAAGCTATGGTG	out-of-frame	QVGQTGKEGTENQGVEPQ|g*	.
TALL018	HNRNPA3	RICTOR	+/+	-/-	2:177216188	5:38960533	splice-site	splice-site	translocation	downstream	downstream	1	0	0	2385	138	low	.	.	.	ATTGAAACCATAGAAGTTATGGAAGACAGGCAGAGTGGAAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTG|GTTTGTACGAAGACTACTTTATTTTTACAAGCCCAGCAGTAAATTATATGCCAACCTGGATCTGGATTTTGCCAAGG	out-of-frame	IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV|glyedyfiftspavnymptwiwilp	.
TALL018	PHF14	NDUFA4	+/+	-/-	7:10974945	7:10933692	splice-site	splice-site	inversion	downstream	downstream	0	1	0	116	1819	low	.	.	.	CTTGATTATGATAGTTCAGATGACAGTGATTTTAAAGTTGGAGATGCCTCAG|TTCTACTCAGTGAATGTGGATTACAGCAAGCTGAAGAAGGAACGTCCAGATTTCTAAATGAAATGTTTCACTATAACGCTGCTTTAGAATGAAGGTCTTCCAGAAGCCACATCCGCACAATTTTCCAC	.	.	.
TALL019	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	5	5	27	34	high	.	.	low_entropy(2)	GCCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCGGTACTTCTTGGCTGTTTGG___...GAAAGACTGAT?TTTTTTTTT?GTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCG	.	.	.
TALL019	MON1B	CTD-2300H10.2(65533),MON1B(20005)	+/+	./+	16:77191633	16:77170830	splice-site	intergenic	duplication	downstream	upstream	6	6	3	63	26	high	.	.	duplicates(1),inconsistently_clipped(4)	GTTAAAACAG___GGATGTGCAGATGGAGGTCGGAGGAGACACTGCTGCCCCGGCCCCCGGGGGCGCGGAGGACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGAAGGTGGAGGGGTTCACGCGGTCCCGCCGGATCCCGAAGACGAGGGCCTGGAGGAAACAG|GGATGCTGAGCTGCTGCAGGAAGCTCTTGAACATCAAGTTATGCCAGCAGAAAAAGACATCAGATTGGAAGAATGTGGGTGATGTTTTGCCTGTGGAGG...___GCAGATGAGCTGGTCTCAGAAATACTCAAGTCTCAAAATCTTTGGAACATATGCTTCCATATCAG___CAATTTTCAAGTTTGCC	out-of-frame	MEVGGDTAAPAPGGAEDLEDTQFPSEEAREGGGVHAVPPDPEDEGLEET|gmlsccrkllniklcqqkktsdwknvgdvlpve	.
TALL019	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	12	0	76	29	high	.	.	duplicates(1),low_entropy(6)	GTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGC	.	.	.
TALL019	SSBP3	DHCR24	-/-	-/-	1:54404576	1:54883773	splice-site	splice-site	duplication	upstream	downstream	9	0	1	218	21	high	.	.	.	CTCGGATGGGCAGGCTCGGGAAAA___GTTAGCTTTATACGTCTACGAATATTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAG___ATTCGATGGGAAAAAAACATCACGTTGGGAGAACCGCCTGGGTTTTTGCACTCGTGGTGGTG|GTGCGGGAATGGAAGGAGCAGGGTAGCAAGACCTTCATGTGCACGGGGCGCCCTGGCTGGCTCACTGTCTCACTACGTGTCGGGAAGTACAAGAAGACACACAAAAACATCATGATCAAC	out-of-frame	SDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWw|cgngrsrvarpscargalagslshyvsgstrrhtkts*	.
TALL019	G2E3	AL390335.1(20110),RP11-354G16.1(145495)	+/+	./-	14:30612379	14:41369477	splice-site	intergenic	inversion	downstream	downstream	1	0	1	14	4	high	.	.	.	AATAAATGAATGCTATAACTACCTTGAGTTAATTGGATGTCTCAGACTTATAACGACATTAAGTGATAAATATATGTTAGTAAAAGACATACTTGGCTACCATGTAATTCAGAGAGTCCACACACCCTTTGAAAG|ATGCTTGTGTGAGTGTGTAAATCTCTTGCATAGGTCCAGATTAATGAAAGATATTACATCTTTGGGATAATCCTTGACCAATGGCAAATGAGAGTCAAATGATTATCACAGACATTCTGTAAAGTTCTAG	out-of-frame	INECYNYLELIGCLRLITTLSDKYMLVKDILGYHVIQRVHTPFEr|clcecvnllhrsrlmkditslg*	.
TALL019	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	7	0	49	22	medium	.	.	low_entropy(1)	CGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCAC	.	.	.
TALL019	RNA5SP382(10399),KLHL33(3314)	TEP1	./-	-/-	14:20425497	14:20408463	intergenic	splice-site	deletion/read-through	upstream	downstream	3	6	1	23	49	medium	.	.	duplicates(1),low_entropy(3),mismatches(1)	TCTTCATTCTCTTTCATCTTTCTACAGGAACTGATTGGCGTGAAAACTGGCTCTTACCCTAAAAATTTCTCTTCTTCTGGCTTTAGAGATAGCACACTCTCCTGGATGGACCTTCTCTTATTTCTCCAATCCAAAATCCAGTAAGCCAGATCAAAGTGTCCAGGGGGGTGTGGCTTCATCCTTGGAGCTGATAGCCAAGGATCCACAG|GCATATACAAGCTGAGTTTCAGCCATGGAAAAACTCCATGGGCATGTGTCTGCCCATCCAGACATCCTCTCCTTGGAGAACCGGTGCCTGGCTATGCTCCCTGACTTACAGCCCTTGGAGAAACTACATCAGCATGTATCTACCCACTCAGATATCCTCTCCTTGAAGAACCAGTGCCTAGCCACGCTTCCTGACCTGAAGACCATGG	.	.	.
TALL019	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	1	8	1	71	14	medium	.	.	duplicates(1)	CAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACCTGCTACCACGGCCCTTCCCCAGTCTCAATAAAAAGCCATGACATGTG	.	.	.
TALL019	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47997739	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	71	1	low	.	.	.	CAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|TTCATGCCGTGGAGGAAGTGGTGAAGGAGGTGGTGGGACATGCCAAGGAGACTGGAGAGAAAG___CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGAC	.	.	.
TALL019	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	2	3	0	13	60	medium	.	.	.	GTTCTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGC	.	.	.
TALL019	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482902	17:4483881	intron	intron	duplication	upstream	downstream	0	3	1	72	71	medium	.	.	.	.	.	.	.
TALL019	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	1	0	180	39	medium	.	.	duplicates(1)	TTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGG...AGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAAC...CCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAG	.	.	.
TALL019	TRIM22	TRIM22	+/+	+/+	11:5708759	11:5707740	intron	intron	duplication	downstream	upstream	2	0	1	15	34	medium	.	.	.	ATTTTTGTTATCACTAGGAGTGAAAGCTGGACATTGAAGAAGCCAAAATCTGTTTCCAAGAAACTAAAGAGTGTATTCCGAGTACCAGATCTGAGTGGG...GCAAGTTCTTAAAG___AGCTGACAGATGTCCAGTACTACTGGGGTAAGATGATATGGGGTTTTCAAATCACTTCCTTTCAGAATTGTGGTTACTATT...GTGTTCCTCCCCAAACATGCTTAAACCATGTAGTTCTTTTTTTTTTTTTTTTTAAGATAGATTTTTGCTATTGTTGCCC|AGGCAGAGGTTGCAGTGAGCCGAGGTCGCGCCACTACACTCCAGCCTGGATAACAGAGTGAGACCCCATCTCAAAACAAACAAACAAACAAAC	.	.	.
TALL019	G2E3	AL390335.1(39998),RP11-354G16.1(125607)	+/+	./-	14:30612379	14:41389365	splice-site	intergenic	inversion	downstream	downstream	2	0	0	14	2	medium	.	.	.	GATTATAATCAGG___ATAAATACTGCAACAACTGTAGCTGACTTAAAGTCAATAATAAATGAATGCTATAACTACCTTGAGTTAATTGGATGTCTCAGACTTATAACGACATTAAGTGATAAATATATGTTAGTAAAAGACATACTTGGCTACCATGTAATTCAGAGAGTCCACACACCCTTTGAAAG|CTAGTGCAACATTCCCCACTACAGACATCTACAGCTTTTGTATTGGAAGGCTTCATCTTC	out-of-frame	IIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLVKDILGYHVIQRVHTPFEs|*	.
TALL019	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	5	2	197	177	low	.	.	.	GCGGTGGTGACGGaATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL019	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	40	177	low	.	.	read_through(9)	CAGGAAATTAGCAAGGGAAAGtGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGC	out-of-frame	QEISKGKwKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL019	KDM6A	KDM6A	+/+	+/+	X:45011019	X:44961284	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	5	0	0	39	23	low	.	.	duplicates(1)	GGAAAAGTGGAGTCTGATTTCTTTTGTCAATTAGGTCACTTCAACCTCTTATTGGAAGATTATCCAAAAG___CATTATCTGCATACCAGAGGTACTACAGTTTACAGTCTGACTACTGGAAG___AATGCTGCCTTTTTATATGGTCTTGGTTTGGTCTACTTCCATTATAATGCATTTCAGTG|GCTGTTCGCTGCTATGAATCTCTAATCTTAAAAGCTGAAGGAAAAGTGGAGTCTGA	out-of-frame	GKVESDFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDYWKNAAFLYGLGLVYFHYNAFQw|lfaamnl*	.
TALL019	IPPKP1(10925),FAS-AS1(10975)	SAP18	./+	+/+	13:21115296	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	4	1	0	68	832	low	.	.	.	GAAAAAGGGAGTCTACATGAATTAATAAGTGAAG___...GAGGCAACAAGAAATCAACATTCTGTTAGCCAGGAAGAAGGCCCTCACCAAGAACTCCAGCCATGCTGACATCCTGATCTCTGACTTTCAGGTTCCAGACCT|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAG	.	.	.
TALL019	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	4	0	28	13	low	.	.	low_entropy(3),mismatches(1)	CCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAG	.	.	.
TALL019	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	intron	deletion/read-through	downstream	upstream	0	2	1	8	5	low	.	.	.	GCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATT	out-of-frame	AHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciaf	.
TALL019	TRIM22	TRIM5	+/+	-/+	11:5708759	11:5707740	intron	intron	duplication/5'-5'	downstream	upstream	2	0	1	15	34	low	.	.	.	ATTTTTGTTATCACTAGGAGTGAAAGCTGGACATTGAAGAAGCCAAAATCTGTTTCCAAGAAACTAAAGAGTGTATTCCGAGTACCAGATCTGAGTGGG...GCAAGTTCTTAAAG___AGCTGACAGATGTCCAGTACTACTGGGGTAAGATGATATGGGGTTTTCAAATCACTTCCTTTCAGAATTGTGGTTACTATT...GTGTTCCTCCCCAAACATGCTTAAACCATGTAGTTCTTTTTTTTTTTTTTTTTAAGATAGATTTTTGCTATTGTTGCCC|AGGCAGAGGTTGCAGTGAGCCGAGGTCGCGCCACTACACTCCAGCCTGGATAACAGAGTGAGACCCCATCTCAAAACAAACAAACAAACAAAC	.	.	.
TALL019	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69079020	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	45	7	low	.	.	low_entropy(1)	GTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGTAAATTATAACAAAACCCAATGGACCGTGAAAGCCAGGG	out-of-frame	LEMLLKVFALGLRGYLSYPSNVFDGLLTVVLL|*	.
TALL019	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	90	148	low	.	.	.	CGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAAC...CCTCTCAGAGAAAGCAGAG___GGACTCTGAGATCATGCAAGAAAAGCAGAAGGCAGCTAATGAGAAGAAGTCTATGCAGACAAGAGAAAAGTGATGACTGGC	.	.	.
TALL019	HEMK1	PARP14	+/.	+/.	3:50589602	3:122726887	3'UTR	intron	duplication	upstream	downstream	0	2	0	2	20	low	.	.	.	.	.	.	.
TALL019	GPX7	FAM159A	+/+	+/+	1:52608495	1:52639975	3'UTR	splice-site	deletion/read-through	downstream	upstream	0	1	1	214	4	low	.	.	.	TGCAAACTCAAATG|AAATGGGGTTTCACCATGTTGCCCAGGCTGGTCTTGAATTCCTGGACTCAAGTGATCGGCCCACCTTGTCATCCCAAAGTGCTGAGATTACAG___CATTGGCGCTCTCATAGGCCTGTCCGTAGCAGCAGTGGTTCTTCTCGCCTTCATTGTTACCGCCTGTG	.	.	.
TALL019	KCNAB2	ACOT7	+/+	-/-	1:5992788	1:6318578	splice-site	splice-site	inversion	downstream	downstream	0	2	0	16	76	low	.	.	.	GGGAAGGAAGATCCGGCGCGGGGCACAGGATCCGGAGCTGGAGCCCCCAG|AGCCGAACACTGTCAGCTACAGCCAGTCCAGCTTGATCCACCTGGTGGGGCCTTC...TTGTGCACGGAG___GTGTGACCATGAAGCTCATGGATGAGGTCGCCGGGATCGTGGCTGCACGCCACTGCAAGACCAACATCGTCACAGCTTCCGTGGACGCCATTAATTTTCATGACAAGATCAGAAAAGGTAACCACTCTTCTGGCAAAGACGAGGaAGGC	.	.	.
TALL019	TNFSF4	RFWD2	-/-	-/-	1:173205311	1:176085890	splice-site	splice-site	duplication	upstream	downstream	1	0	0	98	66	low	.	.	.	GTCACATTGGACTATCAATATCCAGGAGATGTTGAGAAAAAGAGGGGATCCTTTCCAACAAGTCATCCAGCAACTCTGGGACAGAAGGAAAGCTGTGGG...AGAAAAGCAGGGTGCTGGTTTCTAGGACACTAAACCTCATG|ACAAAGAAACAGCCTTGGTATAATAGCACGTTAGCATCAAGACGAAAACGACTTACTGC	in-frame	M|TKKQPWYNSTLASRRKRLT	.
TALL019	RFWD2	TNFSF4	-/-	-/-	1:176184633	1:173188569	splice-site	splice-site	deletion	upstream	downstream	0	1	0	38	101	low	.	.	.	AAGAAGCATACATGACAAAATGTGGCCACAGCTTTTG|GTATCACATCGGTATCCTCGAATTCAAAGTATCAAAGTACAATTTACCG___AATATAAGAAGGAGAAAGGTTTCATCCTCACTTCCCAAAAGGAGGATGAAATCATGAAGGTGC	out-of-frame	EAYMTKCGHSFw|yhigilefkvskynlpnirrrkvssslpkrrmks*	.
TALL020	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21904258	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	17	18	1	43	65	high	.	.	duplicates(2),low_entropy(3),mismappers(3),mismatches(1)	GCCAGGAATAAAATAAGGGGAATAGGGGAGCGGGGACGCGAGCAGCACCAGAATCCGCGGGAGCGCGGCTGTTCCTGGcAG...GCGGCTGCCGAGCTCGGCCCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAACACACAGGCAGCTGGATGTTGAGAGGAGCACATCAGCAGGCACCAGCACACTGGCAGGCCACTGACCAGCAGAACGCCTTGGAGTTTGGCCAGGGCAGTCGGAGGACAGCCCAGGCCGCCCAGGCTGCCGAGTGGCC	out-of-frame	MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg*	.
TALL020	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	4	28	1	120	60	high	.	.	low_entropy(3)	ATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATC	.	.	.
TALL020	MON1B	CTD-2300H10.2(65533),MON1B(20005)	+/+	./+	16:77191633	16:77170830	splice-site	intergenic	duplication	downstream	upstream	5	3	3	74	13	high	.	.	.	ATCCGGCCAATTGAGATTCGGAGTTAAAACAG___GGATGTGCAGATGGAGGTCGGAGGAGACACTGCTGCCCCGGCCCCCGGGGGCGCGGAGGACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGAAGGTGGAGGGGTTCACGCGGTCCCGCCGGATCCCGAAGACGAGGGCCTGGAGGAAACAG|GGATGCTGAGCTGCTGCAGGAAGCTCTTGAACATCAAGTTATGCCAGCAGAAAAAGACATCAGATTGGAAGAATGTGGGTGATGTTTTGCCTGTGGAGGGGGTGGAGGATAGCCTTGGATCCCTTGAAGCCCCTAGGACATGGGTTTAGCCACCCCATGGCACTACAGAGGGTCACGTGAcCcGGAG...CACAGTTACTGTAACACAGCTAAAATTTTTTACCATATCTACTCTTTCTAATGGTCTAATAATGAGAAGGTTTTTAGCACACGTGTCACAGGGTCAAGAG	out-of-frame	MEVGGDTAAPAPGGAEDLEDTQFPSEEAREGGGVHAVPPDPEDEGLEET|gmlsccrkllniklcqqkktsdwknvgdvlpvegvedslgsleaprtwv*	.
TALL020	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	12	4	59	24	medium	.	.	low_entropy(1),mismappers(1),mismatches(1)	CAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAG	.	.	.
TALL020	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	1	2	0	282	54	medium	.	.	mismappers(1)	CCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAAC...GGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGG...AAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAG	.	.	.
TALL020	STAT2	STAT2	-/.	-/.	12:56347786	12:56349825	intron	intron	duplication	upstream	downstream	1	1	1	18	24	medium	.	.	.	.	.	.	.
TALL020	CPSF6	PRKCB	+/+	+/+	12:69262562	16:24219961	splice-site	splice-site	translocation	downstream	upstream	0	1	1	243	238	medium	.	.	.	GATCACGAGAAAAGAGTCGACGTCATAAATCCCGTAGTAGAGACCGTCAaGACGATTATTACAGAGAGAGAAGC...CGCGAATATCGTCATCGTTAGAAG|AGAGACAAGAGAGACACCTCCAACTTCGACAAAGAGTTCACCAGACAGCCTGTGGAACTGACCCCCACTGATAAACTCTTCATCATGAACTTGGACCAAAATGAATTTGCcGG	out-of-frame	ANIVIVRr|etretpptstksspdslwn*	.
TALL020	CPSF6	CMC4	+/+	-/-	12:69262562	X:155064033	splice-site	splice-site	translocation	downstream	downstream	0	1	1	243	76	medium	.	.	.	CGATTATTACAGAGAGAGAAGCAGAGAACGAGAGAGGCACCGGGATCGTGACCGAGACCGTGACCGAGAGCGTGACCGAGAGCGCGAATATCGTCATCGTTAGAAG|TTTTCTGGATATGCCGCAGAAGGATCCGTGCCAGAAGCAAGCCTGTGAGATACAGAAATGTTTACAAG___CCAACAGCTACATGGAATCAAAGTGTCAGGCTGTCATCCAAGAACTGC	out-of-frame	DYYRERSRERERHRDRDRDRDRERDREREYRHR*k|fsgyaaegsvpeasl*	.
TALL020	CPSF6	MTCP1	+/+	-/-	12:69262562	X:155064033	splice-site	splice-site	translocation	downstream	downstream	0	1	1	243	76	medium	.	.	.	CGATTATTACAGAGAGAGAAGCAGAGAACGAGAGAGGCACCGGGATCGTGACCGAGACCGTGACCGAGAGCGTGACCGAGAGCGCGAATATCGTCATCGTTAGAAG|TTTTCTGGATATGCCGCAGAAGGATCCGTGCCAGAAGCAAGCCTGTGAGATACAGAAATGTTTACAAG___CCAACAGCTACATGGAATCAAAGTGTCAGGCTGTCATCCAAGAACTGC	out-of-frame	DYYRERSRERERHRDRDRDRDRERDREREYRHR*k|fsgyaaegsvpeasl*	.
TALL020	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	5	2	0	24	31	low	.	.	.	GTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCC	.	.	.
TALL020	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	24	27	low	.	.	.	CCCAGAGGCGGGtCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCG	.	.	.
TALL020	HMGB1P5(74576),AC092421.1(212696)	ZNF385D	./-	-/-	3:22457505	3:22169035	intergenic	splice-site	deletion/read-through	upstream	downstream	5	2	0	107	54	low	.	.	.	GGGGGATGGAAGGCTGCTGCTCCGTGGCTCGTGCACTGAGAAGAAAGGTGCTGCTATCTTCCCATAGAAACTTCAACAGTTTTTGCTGGAGCTGTGATGAAGGCTGACTGCAAAG___CTTGCTCCTATGCCAGAGATCAATCAGACAGAGGCTCTGCAGCTATTT|ATTTCACCTGTGTACACGATGGCGAGAGTGAGGCTGAATTAATACCTGATGACTTTGAAGAAAAACCAGAAAGAGAAAAGAAACATACCAACTTTACTTTGTGCAATGTATGTAACATTCAGCTGAATTCAGCCGCTCAAGCACAAATCCACTACAATG...ACAATG___GTTCAACTACAATCAATTTGTATAATATCgTGCTCCTTTTGATATCATGGAAGATGAATGTTTCCTGTTTTCTGTGGAGAGGTGGTGTTATTAG	.	.	.
TALL020	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	6	0	17	24	low	.	.	duplicates(1)	CGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...CCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGC...ATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCG	.	.	.
TALL020	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	0	97	176	low	.	.	low_entropy(1)	CGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATT...GAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL020	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	25	176	low	.	.	read_through(5)	CAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCG	out-of-frame	KGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL020	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	3	1	0	92	24	low	.	.	.	GAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGgGC...GGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgpr	.
TALL020	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	2	0	8	4	low	.	.	low_entropy(1)	GGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGAC...CTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAG	.	.	.
TALL020	ZNF763	ZNF440(168),CTC-499B15.8(5872)	+/+	./+	19:11980390	19:11835369	3'UTR	intergenic	duplication	downstream	upstream	0	0	3	14	11	low	.	.	mismappers(3)	CTAAAACTACAAAAATTGGCCAGGCGTGGTGGCCTGCTTCTGTAATCCTAGCTAGTTGGGAGGCTGGCACAGGAGAATCGCTTGAATCTGGGGGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCTAGCCTGGGCAACAGGAGCAAAACTCCGTCTCAAAAAAAAA...|...AAAAAAAAAAAAAAAAAAAAGACTTGGCCTTGTGGTGAGGGG	.	.	.
TALL020	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	21	78	low	.	.	.	CAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTG...GCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCAcGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGC	out-of-frame	ATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL020	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	60	101	low	.	.	low_entropy(1)	GACATTATTCCTGTTTTGCCACTGTATTTTTGGTGAATGgGTAGTAAGTAACTGGCCTCTTTAGTATCACAAAGCTGGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAA...AGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGG	.	.	.
TALL020	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	22	4	low	.	.	mismatches(1)	GTGGAGATGAGGGGCTGGGGGCCTGGCTCACTCTCCCTGCCCCGCCCCACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAACTGTGAGACATGCACTTGCTACGAAACAGAAATTTCATGTTGCA	.	.	.
TALL020	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	15	49	low	.	.	.	CTCAGGATGGGGGCTTCCTTCCTGACTTCAGCACAGCAGCACCTGTCACCACTCACCTCAAGAGGTGaCTCCCGAGCCTCCTGGGAGGGAAGGGGCCATG...CTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGG	.	.	.
TALL020	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	53	78	low	.	.	.	CTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGC	.	.	.
TALL020	RP11-231C14.4	RP11-345J4.3(2068),RP11-345J4.1(5163)	-/-	./-	16:29488035	16:29469901	3'UTR	intergenic	deletion/read-through	upstream	downstream	3	0	0	33	45	low	.	.	.	TGTGAAGTAGCAAAACGTCTCCTGACCCCATTGCCAGCTAGACTGTGTGGAAACTCGGTTCATACCAGCCATTCTAGGGGTGGGGTGAGTTGTTGTCATCCTTAGGAAAGTGTGTTGTTGTAGGATCAACCACATCCTTCAAAAGGACTATGCCTGTTTATAAGCCCAGCTGTTTCTGCC|CTGAGCTTTCTGGAATTTTGCTCCCTTGCCCTGGTGGCTGAGTGTGGGGTGTGTGGAGCTGTTGTCTGCCCTGAGGGTGTG	.	.	.
TALL020	MBOAT1	RP1-130G2.1(18344),MBOAT1(40861)	-/-	./-	6:20109613	6:20061284	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	2	167	1	low	.	.	mismappers(2)	GAGCTCTCAAGGCTGTGTATGATGCAGGCACCTGGGCCGTCACTCAGCTGGCTGTCTCTTACACGGTAGCACCCTTTGTGATGTTGGCAGTTGAACCGAC...|...TCAAGACATGGCAGCTGGTTTCCCCCAGA___GGTCTTGCTCTGTCGCTTAGGCTGGAGTGCAGCGGTATGACCACAGCTCACGGCTGCTTTGACCTCCCT	.	.	.
TALL020	C11orf73	CCDC81	+/+	+/+	11:86345715	11:86386051	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	0	1	32	3	low	.	.	mismatches(1)	CCTCTCTTTTGGAAAACATAATTTGAATAAAATAATTTTTAATGGATTCTGAAATTTGTCATGTTTTGAAGATAACTGACTCCATCTAAAAGTATGAG|AAGTCTCTATTATCTGGGGGAATGTATCAGAATTTGTGAGACGGC...AG___AGGCCTGGCACTGTGGACTCGGTGTTGTCTAGCAGAGAGGCCTTGAGGAAGTGGCCCAGCAGTGTGCTTGCGTTTCCAAG___ATATCTCATCACCC	out-of-frame	PLFWKT*fe*nnf*wilkfvmf*r*ltpsksmr|slyylgeciricet	.
TALL020	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	1	47	77	low	.	.	.	GGAAGGCTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGC	.	.	.
TALL020	GCSAML	RP11-634B7.4	+/+	+/+	1:247565959	1:247663503	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	146	4	low	.	.	.	AACTCAG___TTGCCTGGGAGAGAATCAAAAGAAGCCCAAGAAAGGAAACCCAGATGAGGAAAGAAAACG___GCAGGAAATGACTACATTTGAAAGAAAACTTCAAGATCAAGATAAGAAAA___GCCAAGAAGTTTCATCCACTTCTAATCAG|GTGAAGTGAGTAACCTATGGTCAGCATTTTGTTG	out-of-frame	LSCLGENQKKPKKGNPDEERKRQEMTTFERKLQDQDKKSQEVSSTSNQ|vk*	.
TALL020	AP000783.1	GRAMD1B	+/+	+/+	11:123480893	11:123577367	intron	splice-site	deletion/read-through	downstream	upstream	2	0	0	9	9	low	.	.	mismatches(1)	CGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG...AGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCC	.	.	.
TALL023	STMN1	SPI1	-/-	-/-	1:25904664	11:47360040	splice-site	splice-site	translocation	upstream	downstream	56	81	7	2068	645	high	.	.	duplicates(78)	CTTTTGTGCGCGCCCGGGTCTGTTGGTGCTCAGAGTGTGGTCAGGCGGCTCGGACTGAGCAG___GACTTTCCTTATCCCAGTTGATTGTGCAGAATACACTGCCTGTCGCTTGTCTTCTATTCACCATGGCTTCTTCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCC	in-frame	MASS|dHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSP	.
TALL023	STMN1	SPI1	-/-	-/-	1:25906389	11:47360040	splice-site	splice-site	translocation	upstream	downstream	0	2	0	113	645	low	.	.	.	GCCCGGGTCTGTTGGTGCTCAGAGTGTGGTCAGGCGGCTCGGACTGAGCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGC	.	.	.
TALL023	STMN1	SPI1	-/-	-/-	1:25904664	11:47355546	splice-site	splice-site	translocation	upstream	downstream	0	1	0	2068	1047	low	.	.	.	GCAG___GACTTTCCTTATCCCAGTTGATTGTGCAGAATACACTGCCTGTCGCTTGTCTTCTATTCACCATGGCTTCTTCTG|GCAGCAAGAAGAAGATCCGCC...GGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGAC	in-frame	MASS|gSKKKIR	.
TALL023	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	29	26	4	115	102	high	.	.	duplicates(2),low_entropy(12),mismatches(1)	GGCTGTTTTTTTTTTCTTTCCCCCaTCTCTCTTTTCCTTTCAAATGAGTAATCCCTGAAGATCTTAACCCCCCAATTTCATCACCCTCACCTCCCCCCTT...CACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGG	.	.	.
TALL023	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	8	3	3	54	33	high	.	.	.	CCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAG	.	.	.
TALL023	INPP5B	INPP5B	-/-	-/-	1:37861999	1:37869556	3'UTR	intron	duplication	upstream	downstream	0	2	2	62	23	medium	.	.	.	ATTAAGCCCACCATTGGTTAGCACACTCAGCGCTGTGAGTCGTGAAGACACGGGAGAAAATCCACCATAATAAAACTGACATTCAATTTTCAACTTTAGTTATTTAACACAGATTTTTTTATTTTTTATTTTTTTTTATTTTGAGACGGAGTTTTGCTCTGTCGCGCAGGGTGGAGTGC|AGTGAGCCGAGATCGCACCACTGCACTGAGCCTGGGCGACAGAGCAAGACTCCATCTCGAATAAATAAATAAGTAAgTAAATAAATAAATAAATAAAAACAGTG...___ACTCTGATGCCAGTATGGACTGGAGATGATGGGAGCCAGTTGGATAGCCCCATGGAAATCCCCAAAGAGCTCTGGATGATGGTTGATTACCTG	.	.	.
TALL023	IL12RB1	IL12RB1	-/.	-/.	19:18070196	19:18071139	intron	3'UTR	duplication	upstream	downstream	0	2	1	8	36	medium	.	.	.	.	.	.	.
TALL023	FAM192A	FAM192A	-/-	-/-	16:57174261	16:57175096	5'UTR	intron	duplication	upstream	downstream	0	2	1	36	45	medium	.	.	low_entropy(1)	ATGGCCTATAAATTAAACTATTTGAGAGTTTTTTTTTTTTTT...CTTGCCCTGTCGCTCAAGCTGaG|GTTGCAGTGAGCTGAGATTGCACCgCTGGACTCCAGCTTGGGTGACAGAACGAGACTTCATCTCAAAAAAAAAAAAAAAAGGAGTAATAAGTAATATACACTCTGCTATCTTTATTTCCTTCTCTCCTCTTTGAAGAAAAGCTCAGGTAGAAATAACAGATTCGGTAATCTTCTGTGTCAAAATATGC	.	.	.
TALL023	LINC01226	LINC01225	+/.	+/.	1:31523625	1:31524544	exon	intron	duplication	upstream	downstream	3	5	7	85	48	low	.	.	.	.	.	.	.
TALL023	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	7	2	73	18	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	CAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGGTCCGGGTCCCTGCGGCGG...___A...TATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAG	.	.	.
TALL023	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	6	0	13	16	low	.	.	low_entropy(3),mismatches(2)	CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGG...CCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCG	.	.	.
TALL023	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	1	3	1	169	10	low	.	.	.	CAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL023	FAM129C	KCNN1	+/+	+/+	19:17552670	19:17976056	3'UTR	intron	deletion	downstream	upstream	5	0	0	1236	2	low	.	.	duplicates(2),mismappers(4),mismatches(13)	CTCAAGCAATCCTCCTGCCTTGGCCTCCCAAAGTGCTAGGATTATAGGAGTGATCCACTATGTCCAGCCTCCAAATCCTTTCTAAACACTAGGACTTTTCATGAAAAGAAAAAAGCTATGCCAGTTAGACACACACAGAAATCTCATGATTTTATTTTGAATTTCTTTGACTAAATTGAACTTACAAATAAGTTTATTATGGCCAGGCGTGGCAGTGCACAC|CTGTGATCCCAGCACTTTGGGAGGCtggGGCGGG...TGGGAGGCTGAGGCGGGCGGATCgCtTGgGcTCAGGAGTTcGAGACCAGCCTGGCgAACgTGGTGAgACCTCaTCTCTACaAAAgATACAAAA	.	.	.
TALL023	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69087206	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	2	58	3	low	.	.	.	TGATTCTGGAG___AACTTCCTTCACAAGTGGGACCCCCGCAGCCACCTGCAGCCCCTTGCTGGGACCCCAGAGGCCACCTACCAGATGACTGTGGAGCTCCTGTTCAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTG	out-of-frame	ILENFLHKWDPRSHLQPLAGTPEATYQMTVELLFs|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL023	TMEM106A	LINC00854(6132),CTD-3014M21.1(47933)	+/+	./+	17:43217312	17:43312108	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	76	14	low	.	.	low_entropy(1)	CGAGGTTCTGCACCTGTCCCTCGTGGTGGGGCAGGTTTCCAACAACCTTCTCCTACACATTGGCCCTTTGGCCAGTGAACAG___ATGTTTTACGCAGTAGCTACCAAGATACGGGATGAAAACACATA___CAAAATCTGTACCTGGCTGGAAATCAAAGTCCACCATGTGCTTTTGCACATCCA|GTCATAAGACCCCCATTCCACAGAGCATCCTGCCCGACACGCAGAAGGAAGGAA	out-of-frame	EVLHLSLVVGQVSNNLLLHIGPLASEQMFYAVATKIRDENTYKICTWLEIKVHHVLLHIq|s*	.
TALL023	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	27	16	low	.	.	duplicates(1),mismatches(1)	CTGAAAGGTCTGCTGATGGGGTTCCCTTTGTAG___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___...GCTGCATCATCACATG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATG...CAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGACTATAAAATTTGCTGCAGCACATTATAATACAG	.	.	.
TALL023	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	2	0	41	4	low	.	.	.	AAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGC	.	.	.
TALL023	UCK2	RP11-375H19.2	+/+	+/+	1:165907785	1:166062382	CDS	5'UTR	deletion/read-through	downstream	upstream	0	0	3	285	6	low	.	.	mismappers(1)	AAAGAAGTATGCTGATGTGATCATCCCTAGAGGTGCAGATAATCTGG___TGGCCATCAACCTCATCGTGCAGCACATCCAGGACATCCTGAATGGAGGGCCCTCCAAACGGCAGACCAATGGCTGTCTCAACGGCTACACCCCTTCACGCA...|...GCAagAG___TTTTCCACTAGACTGCATGCGTCCTGAGGACAGGCTTTGCTGCATCTTCAGTACCTCCAG	.	.	.
TALL023	AC012501.2	GALNT13	-/+	+/+	2:153510977	2:153732769	intron	intron	deletion/read-through/3'-3'	downstream	upstream	0	2	0	5	9	low	.	.	mismappers(1)	CTCGCAATGGAGCAGACACTGTTGGACAAGAGCAGATTCACTGGAGAG|GTAACAAGTTGGAAGACTTTGGATCTCAAGAAAAGTGGATTTTGCCTCTACCGTAGAGATAG...AG___ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGTGCCACATACA___TGGAATGTATCCTGCTTTCATCTTGGAGTTCAC	.	.	.
TALL023	UCK2	FAM78B	+/+	-/+	1:165907789	1:166062294	CDS	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	285	14	low	.	.	mismappers(1),mismatches(1)	CTGCTTGCCA___ACAAAGAAGTATGCTGATGTGATCATCCCTAGAGGTGCAGATAATCTGG___TGGCCATCAACCTCATCGTGCAGCACATCCAGGACATCCTGAATGGAGGGCCCTCCAAACGGCAGACCAATGGCTGTCTCAACGGCTACACCCCTTCACGCAAGAG...|...GTGCCAATGAACACTGCATTTGATACAGAAAGCAGGCTTGGAAAGATCTAATTCTACTGAAGAGAAAAAGACAGGATCATGTCAAGCTGCAG	.	.	.
TALL023	SLC30A8	SNORA31(127297),MED30(79755)	+/+	./+	8:117173488	8:117440958	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	0	2	2	4	low	.	.	.	GCCGACAAAAACATTCGAGTTGACCCCACCAAGTTGTTGCCACAGATAATTTAGATATTTAC...|...ACTCTTTTGTAGGTCAGAAGTCCAACTTGACTCTCACTGGGATAAAGTCTAAGGATTGGCTGGCTGCATTATTTTCTAGAGGTGCCTGTGTGGAATCTCTG	.	.	.
TALL023	LINC01225(21317),RP11-73M7.1(9383)	TINAGL1	./+	+/+	1:31562202	1:31583149	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	8	24	low	.	.	.	AGCATCAAAGACGGCCTAACACACACGTCTGGTGCCTCTGCTGGGATGGCTGAAGCAGCCGGAGGCTGGCCAG___A...GCGATCTCgGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGAACTACAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCT...CCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___CaGGCAGGCTGGGAACCACAGCGCCTTCTGGGGCATGACCCTGGATGAGGGCATTCGCTAC	.	.	.
TALL023	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	50	78	low	.	.	.	ATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTG...CCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCC	out-of-frame	NILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL023	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	108	78	low	.	.	.	AAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCT...GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTG	out-of-frame	KQSVWIRNIQL|asrnrfs*	.
TALL023	RP11-499P20.2	RN7SKP189(4502),CYCSP44(114643)	-/-	./+	10:18513182	X:145061939	exon	intergenic	translocation	upstream	upstream	0	0	2	78	6	low	.	.	low_entropy(3)	CATGAGCCAAGCAAAAATAAATTGTTGTTTGGAAGCATCTTCTCTTATTCTGTGCAACAACAATGAACCATTTCTCAGTCGGATTGTGACGTGGGACGAAAATTGGATTTTATATG...|...AAAAAAAAAAAAAAAAAAAAAGGTTATGGTCACTGTTTGGTG	.	.	.
TALL023	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	0	8	9	low	.	.	low_entropy(1)	CTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAG...GCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGG	out-of-frame	LQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmg	.
TALL023	FNBP1L	BCAR3	+/+	-/+	1:93551105	1:93569259	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	0	1	1	9	5	low	.	.	.	AGAAGGCTACGTTCCCACGTCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG|ATGAGAAAACAGAAGAGATTAGGTAACTGCCCAAGGCTTCCCAGCTGGTATGTGGTAGAGCTGAGATTCATTTACTTGGCCTTGAAGAGCTCCTGTATCCAAAAGGAAG___AGACTCC	out-of-frame	EGYVPTSYIDVTLEKNSK|dekteeir*	.
TALL023	CLEC12A	HNRNPA1	+/+	+/+	12:9982129	12:54286662	splice-site	splice-site	deletion	downstream	upstream	1	0	1	783	1299	low	.	.	.	AAAATGGCCTGTGCTGCTCAGAATGCCAGCCTGTTGAAGATAAACAACAAAAATGCATTG___GAATTTATAAAATCCCAGAGTAGATCATATGACTATTGGCTGGGATTATCTCCTGAAGAAGATTCCACTCGTGGTATGAGAGTGGATAATATAATCAACTCCTCTGCCTG|GGAGGAGTCTGCTACTAGTCTTATCAGCTCTTAAAAACAGAAACTCATCTGTCCAAGTTCGTGGCAGAAAG___GAACGTCCTTGTGAAGACCTTTATCTGAGCCACTGTACTTCGTTATCACTGCC	out-of-frame	KMACAAQNASLLKINNKNALEFIKSQSRSYDYWLGLSPEEDSTRGMRVDNIINSSAw|eesatsliss*	.
TALL023	RUFY3	GRSF1	+/+	-/-	4:70794894	4:70828036	splice-site	splice-site	inversion	downstream	downstream	1	0	0	348	333	low	.	.	.	ACTAAACAGTCGCTTGGAAGAGAAGACTAATCAGATGGCTGCTACCATTAAACAACTTGAACAAAG___ATTGCGCCAGGCTGAGCGAAGCCGCCAATCTGCT...ACAGGAGCATCCCAGGAAGGGGTTCCCAGAAGTCAGAATCCAAGATG|ATACATCGAGATATTTCCAAGCAGAAGGAATGAAGTTCGAACACATGTCGGTT	out-of-frame	RSIPGRGSQKSESKM|ihrdiskqke*	.
TALL023	RUFY3	GRSF1	+/+	-/-	4:70794894	4:70820861	splice-site	splice-site	inversion	downstream	downstream	1	0	0	348	516	low	.	.	.	AGCTCACCAGGCAGCG___GAACCAGCTTGAGTTAGAACTAAAACAGGAAAAAGAAAGAAGATTACAAAACGACAGGAGCATCCCAGGAAGGGGTTCCCAGAAGTCAGAATCCAAGATG|GGTGAAGCAAGAAGCATTTCATTTGCACATCTTTCTTGGACTTGGGATATAC	out-of-frame	LTRQRNQLELELKQEKERRLQNDRSIPGRGSQKSESKM|gearsisfahlswtwdi	.
TALL023	SPON2	CTBP1	-/-	-/-	4:1201269	4:1228343	splice-site	splice-site	duplication	upstream	downstream	0	1	0	78	475	low	.	.	.	CTCACGGCCGGGACACTCAGGGCAG|GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTG	.	.	.
TALL023	SPON2	CTBP1	-/-	-/-	4:1201269	4:1216205	splice-site	splice-site	duplication	upstream	downstream	0	1	0	78	408	low	.	.	.	CCTGAAGCCAGTGGGCTGGGGACTCACGGCCGGGACACTCAGGGCAG|GTCGCGTGGGGCAGGCAGTGGCGCTGCGGGCCAAGGCCTTCGGCTTCAACGTGCTCTTCTACGACCCTTACTTGTCGGATGGCGTGGAGCGGGCGCTGG	.	.	.
TALL024	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	15	0	58	25	high	.	.	.	ACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCT	.	.	.
TALL024	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	5	9	1	34	36	high	.	.	duplicates(1),low_entropy(2),mismatches(1)	CTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAG	out-of-frame	PFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL024	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	4	2	3	34	23	low	.	.	low_entropy(1)	GAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GC...CAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAG	out-of-frame	QHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL024	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	4	6	3	23	69	high	.	.	low_entropy(1)	CTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...CTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGG	.	.	.
TALL024	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	2	14	0	19	38	medium	.	.	low_entropy(1),mismappers(1),mismatches(1)	CGCCGCCGCAGCCGCCGCCGCCGCCCGCGCCGGGACCTGAGTCCGTGGCGCCGGCGCTGAGCGGGCCCCCGCCGCCCGCGCACTCCCGAGGCCCTtGGGC...GTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGCAGCAACAATGGC	.	.	.
TALL024	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	1	0	317	30	medium	.	.	.	GGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGC...ATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGG...AAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGC	.	.	.
TALL024	PTEN	RNLS	+/+	-/+	10:87865103	10:88279197	exon	intron	deletion/5'-5'	downstream	upstream	0	0	95	201	172	low	.	.	duplicates(11),mismappers(8)	TAGCGAGCTCGGTAATCCGGTCTCCTAAATGAACAAAAAAGTAGACGCTTTTTGAGGTTGAGCATATTTCGATTAAATCTTGGCTTAGGCCCTAGATCAAGGGTTTAGATCAGAATAAAATGAAAATTAGTGTTGCACGTACGCATATTGCATCAGAATCTTGCAGTGATTGTTTTAGTTTCCTGAGTTGCATTGATAGATTCTTTTAAAATATGACTGATTTGCATAACTTTAGAAGCAGAATCATTTTCAGTATA...|...CTTAAATACAGTCACCAGTGAGTTCTACAAATACTGAAGTGGCTTCCTAGCTAGATCTAAAGCTACCTATgGATGTAGTGACGGCTATCAAAGGGGATTATTTTCCTAAATCATATTTTACTATTATAATAGTAATAATAATGGCCAGCATTTATGGAGTGTTTTCTCTACGCAGGACACAATGCTTACACTTTGCATGTACATACTATAACCCTCAGAATAATCCTACAGTAGGTAAAATTGTATCCACATTTCATAGACGAGGGCCCTGCGGCTCGAGACAGAGACAAAGG	.	.	.
TALL024	LINC01226	LINC01225	+/.	+/.	1:31523625	1:31524544	exon	intron	duplication	upstream	downstream	4	3	6	99	48	low	.	.	.	.	.	.	.
TALL024	KCNJ12	PDLIM1P2(4881),RP11-728E14.3(6193)	+/+	./+	17:21419513	17:21450320	3'UTR	intergenic	deletion/read-through	downstream	upstream	1	6	1	18	23	low	.	.	.	CACCCACCCATCAGGTTGGGCACTGGCACAGGTGAACCCCACAGTCCCCGACCCTCTGCCCTGATTATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|GGTGTATGAAGAAAGGGCTTCAGCAGAAACAGAGGCTGAAGCCTGCGTGCTGGGGGCCGAGAGGCCAGAGGAGAATGTGATGAGACATAGAATTGGTAGTGCAGGAAGTTGGAAGATCAAGTACCGTGATGTTGGTGCTGGCTGCTTGTGTTAAACTGCCTAGGTTTTAATCTACG	.	.	.
TALL024	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	1	4	2	49	15	low	.	.	low_entropy(2),mismappers(1),mismatches(1)	GGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___...CATTGCACCATGTGTGGCATTTGGG...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGAT	.	.	.
TALL024	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	0	136	177	low	.	.	.	GTCAGCCTGGTGGACCCGGAGTACCTGCCCCGGAGACACG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCA...CCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCC	out-of-frame	VSLVDPEYLPRRHVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|gprelllcarpgpga*	.
TALL024	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	129	177	low	.	.	.	GATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGC	out-of-frame	MPQTCDGTGQMHLGr|sqrttsmcqtwarclrlmfhptcltcpalpttsctlptw	.
TALL024	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	129	90	low	.	.	read_through(1)	CCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTGTTCTCCAGTGCC...CCCCCGCCACAGGATCCAGAGCAAG	out-of-frame	MGLGRCIWE|gvlqc	.
TALL024	LZTFL1	SLC6A20	-/-	-/-	3:45826252	3:45782219	3'UTR	CDS	deletion/read-through	upstream	downstream	1	0	4	474	12	low	.	.	duplicates(1)	CAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGGtA|g|TTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCG___GCGGAGTTTCGCTCTTATTGCCCAG	out-of-frame	KDLRKRLAQYEPED*n*rfpleattckhtssltsg|s|FLVPYIIMLIVEGMPLLYLELAVGQRMRQGSIGAWRTISPYLSGVggvslllp	.
TALL024	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	73	72	low	.	.	duplicates(1),mismatches(1)	AATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGG--ATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACA...CCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCC	out-of-frame	MGVYIYDGELVSKNGFFQg*ptdldsscssgtwrpcnsccy*vcr*yfkricnlfidniinidllflasrfcanq|PQGIGSPSVYHAVIVIFLEFFAWGLL	.
TALL024	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	85	72	low	.	.	low_entropy(2)	AAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG	in-frame	KQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTL	.
TALL024	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	1	1	6	15	low	.	.	mismatches(1)	ACCTggGGTCAGGAGTTCGAGACCAGCCTAGCCAACATGGCGGAACTGTCTCTACTgAAAgTgCgGAAATTgGCCAG___GAAGGAAAATACATGTACAGCC...CTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTG	.	.	.
TALL024	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	100	157	low	.	.	low_entropy(1)	CTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL024	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	15	157	low	.	.	read_through(5)	AGAAAACCCAGGAAATTAGCAtGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTG...TCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGG	out-of-frame	KTQEISmGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL024	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	1	150	7	low	.	.	.	AAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGaTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGA	out-of-frame	KKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|eiksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
TALL024	MTAP	CDKN2A	+/+	-/+	9:21825560	9:21993809	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	8	6	low	.	.	duplicates(1),mismappers(4),mismatches(1)	GGGATTCTTGGATCATGTGGTAGTTGATATTTTCAGTTTTTTGGGGAATTTTAGTAATGGCTGTATTAATTTATATTCCTACCAGCAGTATACAAGGGTTCTGTTTTTGTCACATCCTCATCAACACTTACTTTGTTTTGTCATTTTGATAATGGCCATTGTGGCCT...|...GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAGTCATTCCCACCCAGGATATTCGGGACTCACTGACTTCTGAGGTGGGTTTAGAAGCTCTGTTCGCCTCAGTTTCCCACGATTGAGGGGCTGTGTGAAGGGAGGTCCAGGTTCAATGGTACTGCGAGAACC	.	.	.
TALL024	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121447	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	9	9	low	.	.	mismatches(1)	CAGATTTCCGG___AAAATTCTTGCTGCTGTATTGAGAACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|ATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCC	.	.	.
TALL024	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121455	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	9	9	low	.	.	mismappers(1)	AACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|CTGGGCAGATGTGCCTGAGACAGGTTTGACCAGGCAACTGA...AAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCTGTCTGGAACCGCTTCCTCCCAGACTAAGTGAG	.	.	.
TALL024	RP11-517A5.4	NPIPA5	-/-	-/-	16:16293441	16:15378227	exon	intron	deletion	upstream	downstream	0	0	3	12	12	low	.	.	duplicates(1),mismappers(1)	CCCCATCACTCCTCACCAAGGCCACAcGaTTGTCCATCATCCACAATGCCACAGCCcCCACCCACCCAGCCTTCCAAAGTGGCCACTTGAGGACcCCCAGGGGCCCTCATGATCCAAATTCCTTCTATCCAAAGGAAGGAACCAAAGTGATTTGGATaTATTTTCCCATGAATCCTCTTCTGCCCAAAGCTTCAC...|...GAGaTTCTTCCTGCCATCCTGCCATCATTTGTTTTTTATGTTTTGTCGCCAAAAGTGACCTTGAGGAACCCTGG...TGGGAGGAGCGTGGGGGACTGAGATGGGGGAGGGGTCATTGGGATGATGCGGGCgCTACTTGGAATGTCCATTGTGAGGCACCACCGGGGTCATCAG	.	.	.
TALL024	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31583149	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	323	45	low	.	.	.	CTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGG...AACTATGG___CTGGCAGGCTGGGAACCACAGCGCCTTCTGGGGCATGACCCTGGATGAGGGCATTCGCTACCGCCTGGGCACCATCCGCCCATCTTCCTCGG	.	.	.
TALL024	ZNF763	ZNF440(168),CTC-499B15.8(5872)	+/+	./+	19:11980395	19:11835369	3'UTR	intergenic	duplication	downstream	upstream	0	0	2	11	24	low	.	.	mismappers(1)	CAAGACTGGCCTGATCAATATGATGAAACCCCTGTCTCTACTAAAACTACAAAAATTGGCCAGGCGTGGTGGCCTGCTTCTGTAATCCTAGCTAGTTGGG...CACAGGAGAATCGCTTGAATCTGGGGGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCTAGCCTGGGCAACAGGAGCAAAACTCCGTCTCAAAAAAAAAAAAAA...|...AAAAAAAAAAAAAAAAAAAAGACTTGGCCTTGTGGTGAGGG	.	.	.
TALL024	TPCN2	RP11-554A11.7(26359),RP11-554A11.8(11775)	+/+	./+	11:69088210	11:69135453	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	0	2	48	3	low	.	.	.	GTGTGGCCCAACAACCATCTACAGAACAGCTGCTGGTGCTTCAGGGAGGCGCCGTGCCCTCCGCTTTCTTTTATAGCTGCTTCAGTGAGAATTCCCTCGT...|...CGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCtGG	.	.	.
TALL024	ZNF215	ZNF214	+/+	-/+	11:6955782	11:7000694	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	1	1	0	14	6	low	.	.	.	CTGGAGAAGAATCATCCCATGGAGTGATTATGACAAGGCTTACCGAAAGTGGACACCCTTCTTCAGATGCCTGGAAAG|AATTTCTCTTCTGTGTGGACTCTTTGATGATTGTGAAGACTAGAGATCTGGCTGAAGCTCTTACCACATGCATTACAGCTATAAGGTACCTCCCCTATGTGAACTCTCTGA	out-of-frame	GEESSHGVIMTRLTESGHPSSDAWK|eflfcvdslmivktrdlaealttcitairylpyvnsl	.
TALL024	TMEM71	LRRC6	-/-	-/-	8:132687462	8:132661627	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	1	4	1	low	.	.	.	CTCAACGAAGGTGTGGGTCCGCCTTCTGATGACGGAACCTGTTACAGCTGTCTGTCTGAAGCGATGAGATGAGGCAACCCTTGCTCTGGGAAGGCAGAGTCACCTGGCATCATCAAG|TCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGTGTCATTTTTTCC	.	.	.
TALL024	LEF1-AS1	LEF1	+/+	-/-	4:108173519	4:108089257	splice-site	splice-site	inversion	downstream	downstream	1	0	1	161	1309	low	.	.	.	TGG___GCCCCTTTGTGTGACTAAATTTGGCAAGAATATGGATCTGAGCCAGTCTTTCCACGTGTGCTCCCAGCTCCCAGCTGAGAAGGCCAAGGGTTCTCTTCCGG|TCAAATAAAGTGCCCGTGGTGCAGCCATCCCATGCGGTCCATCCTCT	.	.	.
TALL024	TCF12	NAP1L1	+/+	-/-	15:57001384	12:76053110	splice-site	splice-site	translocation	downstream	downstream	0	1	0	2	5058	low	.	.	.	CACAGATTTGAATACCAGCCTCCAATATTTCA|TTCCTGAGAGTGGAGATCTG___GATGATGATGCTGAAGCTATCCTTGCTGCAGACTTCGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTATATTTTAC	.	.	.
TALL025	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	13	11	0	50	53	high	.	.	low_entropy(2),mismatches(3)	CTTTTATTTACGAGAAGAAATCTCCCCCTCG___...T?TTTTTTTTT?GTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCG	.	.	.
TALL025	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	5	6	0	27	29	high	.	.	duplicates(1),low_entropy(2),mismatches(1)	GTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGG	out-of-frame	LEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL025	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	12	13	0	852	268	medium	.	.	duplicates(1),low_entropy(4)	GCCAAATTTGGTTGGTGGTGTTGTCACAGTGAGGCTCTTTGGGCTGTGCGGCACCTCATGACCATATTGGCTACACCCATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTTGACCCTGTGAGACCCTAAGGACCCAGCCCTCTCCTAGCCTGTGGACCACATCCCTGTG	out-of-frame	akfgwwcchsealwavrhlmtilatpivfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssiclhfdpvrp*	.
TALL025	RP11-294C11.2	IGHD6-19	-/-	-/-	15:21742366	14:105891710	splice-site	CDS	translocation	upstream	downstream	0	17	0	1	76	medium	.	.	duplicates(2)	GCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGTGCGAGA|AGgGGCTGGTACCACAGTGACACTCGCCAGGCCAGAAACCCCGTCCCAAGTCAGCGGAAGCAGAGAGAGCAGGGAGGACACGTTTAGGATCTGAGGCCGCACCTGACACCCAGGGCAGCAGACGTCTCCCCTCCAGGGCACCCTCCACCGTCCTGCGTTTCTTCAAGAATAGGGGCGGCCTGAGGGGGTCCA	out-of-frame	SVTAADTAVYYCAR|rgwyhsdtrqarnpvpsqrkqreqgghv*	.
TALL025	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	4	2	2	16	113	medium	.	.	.	CCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAG	.	.	.
TALL025	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	3	0	336	39	medium	.	.	.	CCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACC...CCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCC...GGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGC	.	.	.
TALL025	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	7	31	medium	.	.	.	GGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA___GAAGGAAAATACATGTACAGCCAACTTCCTTGAGG...CACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATT?C...___TGTCTGAGTGCTATGAAGATTGCAC...AGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCC	.	.	.
TALL025	LINC01226	LINC01225	+/.	+/.	1:31523622	1:31524541	exon	intron	duplication	upstream	downstream	3	1	3	157	81	low	.	.	.	.	.	.	.
TALL025	JADE2	JADE2	+/+	+/+	5:134559990	5:134535858	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	3	2	1	52	50	low	.	.	.	CCCAGAGCCCGTGGTGAG___GATCCTCCCACCACTGGAAGGCCCCCCTGCCCAGGCATCCCCGAGCAGCACCATGCTTGGTGAGGGCTCCCAGCCTGATTGGCCAGGGGGCAGCCGCTATGACTTGGACGAGATTGATGCCTACTGGCTGGAGCTCATCAACTCGGAGCTTAAGGAGATGG|ATGGAAGAGAAGAGGCGAAAATACTCCATCAGCAGTGACAACTCTGACACCACTGACA___GTCATGCGACATCTACATCCGCATCAAGATGCTCCAAACTGCCCAG	out-of-frame	PEPVVRILPPLEGPPAQASPSSTMLGEGSQPDWPGGSRYDLDEIDAYWLELINSELKEM|dgreeakilhqq*	.
TALL025	LZTFL1	SLC6A20	-/-	-/-	3:45826255	3:45782229	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	6	554	19	low	.	.	mismappers(2)	CAGCAGCTTATCGAAACATGAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGG...|...CCtCAGGTAGTTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAG	.	.	.
TALL025	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	2	0	49	10	low	.	.	duplicates(1),mismappers(2)	GGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAA	.	.	.
TALL025	DNAJC10	DNAJC10(30455),Y_RNA(3205)	+/+	./+	2:182777918	2:182824919	3'UTR	intergenic	deletion/read-through	downstream	upstream	3	0	1	125	6	low	.	.	low_entropy(1)	GGAGATTCTTCATTGTTTTCTTTCCTTCTCAAAGGTTGAAAAAATGCTTTTAATTTTTCACAGCCGAGAAACAGTGCAGCAGTATATGTGCACACAGTAAGTACACAAATTTGAGCAACAGTAAGTGCACAAATTCTGTAGTTTGCCGTATCATCCAGGAAAAC|CTGGTCAAAATCACCATGCTCGGTGTTTAGAGGAAGAGCTCTGCTTCAAACTGGCTTCTGGCtGTGGTGACGCTTGACTGGGGCTAGGGTGCCAGCAGCCATCCTGGAGCTCAAGACGC	.	.	.
TALL025	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	2	2	0	42	29	low	.	.	mismatches(1)	GACTCAGGCTTGACTTGTATTCTCCCCGTCCAACAATGGAATCTGCCATTTCTCCAAGGAGCCCTGATTCCTTTTATTTGAGCGTG___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___...TCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAG...CAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGACTATAAAATTTGCTGCAGCACATTATAATACAGAGATCTTGAAAA___GTATTGATAATGAGTGG	.	.	.
TALL025	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	60	50	low	.	.	mismatches(1)	AACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGC	out-of-frame	LVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL025	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	83	50	low	.	.	.	GGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTT	out-of-frame	AVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL025	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	59	50	low	.	.	duplicates(1)	TTTCTTTGGAAGTAaATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTG	in-frame	FFGSkFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIG	.
TALL025	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	1	2	0	3	2	low	.	.	.	GCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTG	out-of-frame	HFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaa	.
TALL025	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	1	44	4	low	.	.	.	CCTTGATGACAGCACAGCCAgCCAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACCTGCTACCACGGCCCTTCCCCAGTCTCAATAAAAAGCCA	.	.	.
TALL025	CPA4	CPA5	+/+	+/+	7:130322655	7:130346407	CDS	splice-site	deletion/read-through	downstream	upstream	0	1	1	74	7	low	.	.	inconsistently_clipped(1),mismappers(1)	GCACCACTGTCT___ATCCAGCTAGCGGGAGCAGCATCGACTGGGCgTATGACAACGGCATCAAATTTGCATTCACATTTGAGTTGAGAGATACCGGGACCT...CCCCACTGCAGAGGAGACGTGGCTGGGGCTGAAGACCATCATGGAGCAT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCG	out-of-frame	PTAEETWLGLKTIMEH|plgavls*	.
TALL025	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	84	15	low	.	.	.	CCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCACACCCgGGAG	out-of-frame	KALASVSGTEYQVGPTCTTV|caag*	.
TALL025	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	0	46	2	low	.	.	.	CTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTT...GAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCC	out-of-frame	NNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsm	.
TALL025	C11orf54	MED17	+/+	+/+	11:93759858	11:93788001	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	97	49	low	.	.	.	CTTAACTTTGTGACTTGTATGAGAGAGACCCTGGAAAAACATTATGGAAATAAGCCTATAGGAATGGGAGGTACTTTCATAATTCAGAAGGGAAAAGTGAAGTCTCACATTATG___CCTGCAGAATTTTCTT...TTATGAAATGAAAGCTCCTTTGGTTTGTCTACCAGTTTTTGTCTCCAGAGACCCA|GAGTGGTAAAATTTCAGCCTTCCCTTTGGCCTTGGGACTCAGTGAGGAACAATTTGAGAAGTGCCCTG	out-of-frame	YEMKAPLVCLPVFVSRDP|ew*	.
TALL025	GGNBP2	EIF2D	+/+	-/-	17:36547459	1:206602437	3'UTR	CDS	translocation	downstream	downstream	0	0	2	21	205	low	.	.	.	AAAAAAAAAAATTCAGTGAGTTTGGATATAAGATTATTATTTAATGAATAATCATAACATAGGAAAACATATCAAAACATAGGGAAAACCAACATAAAT...|...GTTACAGCAATGCTTCTTACATGCCTTGAAGTGCCGAGTCAAAAAGGCTGACCTCCCTTcACTCACCAGCACTTTCCTTGGCAGCCACATGTTCTCCT	.	.	.
TALL025	ICE2	C20orf27	-/.	-/.	15:60429201	20:3754068	intron	CDS	translocation	upstream	downstream	0	0	2	17	75	low	.	.	.	.	.	.	.
TALL025	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	1	0	76	5	low	.	.	mismappers(1)	ATTTGTTACACATTAGGGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGC	out-of-frame	icytlGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL025	RP11-499P20.2	RN7SKP189(4499),CYCSP44(114646)	-/-	./+	10:18513110	X:145061936	3'UTR	intergenic	translocation	upstream	upstream	0	0	2	55	4	low	.	.	low_entropy(1)	GAAAAAACTCAATAAGTAGGTGCCTCATGAGCCAAGCAAAAATAAATTGTTGTTTGGAAGCATCTTCTCTTATTCTGTGCAACAACAATGAACCATTTCTCAGTCGGATTGTGACGTGGGACGAAAATTGGATTTTATATGACAACCACTGACAACCAGCTCAGCTGTTGGACTGAGAAGCTCCAAAGCCAAACTTGCACCAAAAAAAAAAAA...|...AAAAAAAAAAAAAAAAAAAAAAAAGGTTATGGTCACTGTTTGGTGG	.	.	.
TALL027	TCF7	SPI1	+/+	-/-	5:134138164	11:47360040	splice-site	splice-site	translocation	downstream	downstream	123	241	159	1329	987	high	.	.	duplicates(227),mismappers(2),mismatches(14)	CTCCGCGCCCCGCACTCCCGGCGCCCAGCGCCCCGCGCCCCGGCGGGCGGAGCGCAC...GGCCGGCGGCGCAGGGATCCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGATGGCGCGCGCGCTGCGCAACTACGGCAAGACGGGCGAGGTCAAGAAGGTGAAGAAGAAGCTCACCTACCAGTTCAGCaGC...GCCAGGCCcCCCCGCTGGCCATAGCATTAAGCCCTCGCCCGGCCCGGACACAGGGAGGACGCTCCCGGGGCCCAGAGGCAGGACTGTGGCGGGCCGGGCCTCGC	in-frame	AGGAGIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQ|dHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVKKKLTYQFS	.
TALL027	TCF7	SPI1	+/+	-/-	5:134138237	11:47360040	splice-site	splice-site	translocation	downstream	downstream	3	8	161	71	987	high	.	.	duplicates(70),mismappers(2),mismatches(6)	GCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___...CTCCAATAAAAG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAGGTACAAGCCTGGGATGGGGAGGGGCCCAGTGAAACCAGAGCCTAAGGGCCAAGACCCCAGCTTCTGAGACCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGAT...GGGCGAGGTCAAGAAGGTGAAGAAGAAGCTCACCTACCAGTTCAGCGGCGAAGTGCTGGGCCGCGGGGGCCTGGCCGAGCGGCGCCACCCGCCCCACTGAGCCCGCAGCCCCCGC	out-of-frame	lq*kHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQgtslgwggaq*nqslraktpasetr|pllglppppraqrvrelrreqlhgaperaapaaaaalpphgagadarpryphgatpsqswppgllpapdvppvpipvpspaqlr*	.
TALL027	TCF7	SPI1	+/+	-/-	5:134116033	11:47360040	splice-site	splice-site	translocation	downstream	downstream	6	7	86	1545	987	high	.	.	duplicates(39),mismappers(1),mismatches(5)	CTGGGCACGATACAGTTCACACCACGGCTGCGATG___...CCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___...ACAG...___...ATTGGCCAAG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAGGTGGGGCACCTGGCCCTCCACCCTGGCCCCGACCCTGGCCGTGTCTGTGCCCTGaCCCCACCCAGCCAG...GTGTGTGTGTGTGTGCATGTTTGCCAGTGTGTGTGTTTTGTGGGGCTGTCTGTGGC	out-of-frame	igqGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|titgtstpttctassrasprttsrssracsprscssstatwswsrctssippwchpipvlatrsptcpgcassthpcpqpspaqmrrrasgraphwrcltarrmawspglgsclgrqvghlalhpgpdpgrvcaltpps	.
TALL027	TCF7	SPI1	+/+	-/-	5:134116033	11:47359006	splice-site	splice-site	translocation	downstream	downstream	0	2	18	1545	1284	high	.	.	duplicates(8),mismatches(1)	GACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___...ATTGGCCAAG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGG	in-frame	igqGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|VSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKE	.
TALL027	TCF7	SPI1	+/+	-/-	5:134116086	11:47360040	splice-site	splice-site	translocation	downstream	downstream	0	1	87	47	987	medium	.	.	duplicates(33),mismatches(5)	CTGGGCACGATACAGTTCACACCACGGCTGCGATG___...CCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___...AGGAGACAGAATTGGCCAAG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTGGTAAGTGGACCCCGCAGCCAGTGCCGCCCTGTGCTTGCAGCCTCCTTGACCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGAT	out-of-frame	MYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLVSGPRSQCRPVLAASLTr|pllglppppraqrvrelrreqlhgaperaapaaaaalpphgagadarpryphgatpsqswppgllpapdvppvpipvpspaqlr*	.
TALL027	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	4	16	9	110	80	high	.	.	duplicates(15),low_entropy(3),mismappers(1),mismatches(4)	CTTTTATTTACGAGAAGAAATCTCCCCCTCG___...TT?TTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGaCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGG...GCAGCAGTGGAGGTCGGGAACGgCTCATgGTGGAGCCCCCGCTgCCTCAGGAGAAGGCAGGGGGACCAGCCA	.	.	.
TALL027	CTB-113I20.2(65280),CTB-113I20.1(11072)	NR1H3	./-	+/+	5:134070842	11:47267913	intergenic	splice-site	translocation	upstream	upstream	1	1	3	97	34	high	.	.	duplicates(1)	GTTGGGTTAACCCCTAACACTGCCTGAAAGATTGGTCACCCCTCGGGACTCAGGGTGGGACGTCAGAGCCCCCACCCCTAGGTTCCTCTGCTGGGCGGGGTTTACGCCCCTGGGAAGCGGCTGGGGATGGTGACGCTTGGACCGGTTTCCTGTGAAAATCCTACGAGCCATTTTGGCAATAAATTTGTACAAGTTCTTTAAAACTGTGCAGACCTCTGATCCAGCACCTCCTTGCTGCCTAGAAAATAA?CGCAGATACGTGCAAAAAG|GGCTGCAAGTGGAATTCATCAACCCCATCTTCGAGTTCTCCAGGGCCATGAATGAGCTGCAACTCAATGATGCCGAGTTTGCCTTGCTCATTGCTATCAGCATCTTCTCTGCAG___ACCGGCCCAACGTGCAGGACCAGCTCCAGGTAGAGAGGCTGCAGCACACATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATCCCCAT___GACCGACTGATGTTCCC...CCCACCGCTGCTCTCTGAGATCTGGGATGTGCACGAATGACTGTTCTGTCCCCATATTTTCTGTTTTCTTGGCCGGATGGCTGAGGCCTGGTGGCTGCCTCCTAGAAGTGGAACAGACTGAGAA	.	.	.
TALL027	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	2	3	0	59	30	high	.	.	duplicates(5),mismatches(1)	CTATGAAAGT...CGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAA...ATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAGcCA	.	.	.
TALL027	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	12	26	7	156	94	medium	.	.	duplicates(31),low_entropy(1),mismappers(2),mismatches(1)	GGCGCAGGCCCGGGCCCGGCGTGGCGGAGGTGCGCGTGAGCGGCCAGCAGAGGGCGCCAGAGAGCCAGGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCAC...GCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGGGTAGAGATACATATGGAGTCAGACCTTTGTTTAAAGCAATGACAGAAGATGGATTTTTGGCTGTATGTTCAGAAGCTAAAG___GTCTTGTTACATTGAAGCACTCCGCGACTCCCTTTTTAAAAGTGGAGCCTTTTCTTCCTGG	.	.	.
TALL027	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	8	3	3	114	649	medium	.	.	duplicates(3),low_entropy(1)	GGCGGAGtAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAG...CCCAATtTGTGAAGTAGCTAATAATATAGAACAgAATGCTCAAGAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL027	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	4	2	4	17	18	medium	.	.	duplicates(5)	ATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGG	out-of-frame	INEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL027	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	0	5	5	168	182	medium	.	.	duplicates(7)	.	.	.	.
TALL027	RP11-460N20.4(2926),RP11-460N20.5(2397)	RP11-479O9.2	./.	+/.	7:65081706	7:65773650	intergenic	exon	deletion	downstream	upstream	3	1	0	22	11	medium	.	.	duplicates(2)	.	.	.	.
TALL027	G3BP2	CCNG2	-/-	+/+	4:75673208	4:77158533	splice-site	splice-site	inversion	upstream	upstream	0	1	3	1204	538	medium	.	.	duplicates(1)	GTGAGGCAGACGAACTCGCGGCTCTCCGGCTTCCGAGGCTTCCGAGTTGTCGGAGGAAGGGGGCGGCGAGCAATAAGAACCCGCCGCACCCGGTCCTCAGCGACTCTTCTGACCTCCGCGCGACGTACCCGCCGCCGCCGTTGGCTGGAG|ATGAAGGATTTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACTTCTCGGGTTGTTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGGCTGAGTTTGATTGAGGCTACCCCGGAG___AATGATAACACTTTGTGTCCAGGATTGAGAAATGCCAAAGTTGAAGATTTAAGGAGTTTAGCCAACTTTTTTGGATCTTGCACTGAA	.	.	.
TALL027	RP11-420K14.1	ZNF257	+/.	+/.	19:21647331	19:22062458	intron	intron	inversion/3'-3'	downstream	downstream	1	0	1	4	1	medium	.	.	duplicates(1),mismappers(1)	.	.	.	.
TALL027	C22orf24	EIF4ENIF1	-/-	-/-	22:31945233	22:31488745	splice-site	splice-site	deletion	upstream	downstream	0	2	0	52	60	medium	.	.	duplicates(3),low_entropy(1)	CCCCAGGCGTGGGAAGATGGAACCAGAACAATTCGAACGAGCAGAGCAAAACAGATCGGAATTGCAGACTTCAGGTCGTGGCAGAGAAAACCAGCTGAGACAGGGCGCCACTTACTAG|GTGCAGAGCATTGTAGACCAAGGAGCCATGGATAGGAGAAGTATGGGTGAAACAGAAAGTGGAGATGCTTTCCTTGACCTGAAGAAGCCTCCTGCCTCCAAATGCCCCCATCGCTATACAAAA___GAAGAACTCTTGGATATAAAAGAACTCCC	.	.	.
TALL027	SUV420H1	TYSND1	-/-	-/-	11:68213477	10:70143972	splice-site	splice-site	translocation	upstream	downstream	2	0	0	177	56	medium	.	.	.	CGGGGCGATGAGGTGAGGACGCCCGGGAACCGGAGGCGGCACCGCGCGGCGCACGGACCTGGGACGCGGAGTCCTGAAGCCGGCGGACGGTTTTCGTACGGGCGGCCGTGCGCGAGGCGAG|GAGTGTGGCCATCTGGGGCCGTGTGGTATTTGCCACTCAGGAGACATGTCCCTATGACATAGCAGTGGTGAGCCTGGAGGAGGACCTGGATGATGcCCC	.	.	.
TALL027	CTDP1	NFATC1	+/+	+/+	18:79718016	18:79467450	splice-site	splice-site	duplication	downstream	upstream	1	0	1	191	41	medium	.	.	.	CTGACTGGCTGTGGAGCTGCCTGGAGCGCTGGGACAAGGTGGAGGAGCAGCTCTTCCCGCTCAGGGACGATCACACCAAGGCACAGAG___GGAGAACAG-CCTGCGGCCTTTCCCGACCGGGAGGGTGT...CCGCCTTGTTCCACCCGATGCCGGTTCTTCCCAAGGCCCAGCCTGGCCCCGAGGTTCGGATCTACGACTCCAACACGGGGAAGCTCATCAGGACGGGCGCCCGGGGGCCCCCAGCACCCTCCAGC...CCATCCGCCAGGAGCCCTCTTCCTTCAG|AATTCTCTGGTGGTTGAGATCCCGCCATTTCGGAATCAGAGGATAACCAGCCCCGTTCACGTCAGTTTCTACGTCTGCAACGGGAAGAGAAAGCGAAG	out-of-frame	IRQEPSSFr|ilwwlrsrhfgirg*	.
TALL027	EEF1A1P6	DNAH11	-/-	+/-	7:22510571	7:21877788	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	8	3218	2	low	.	.	duplicates(6),low_entropy(5),mismappers(1),mismatches(29)	GGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGgGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGG...|...ATTCTCCTGCCTCAGgCTCCCGAGTAGCTGaGAtTACAGGtGCCCACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGG	.	.	.
TALL027	GLIPR2	CLTA	+/+	+/+	9:36147894	9:36211603	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	1	842	208	low	.	.	duplicates(4),mismatches(1)	GCAGTGCAGCGCAGCCGCGGGGAGCGAGGAGCGCGCGGAGCCGGCCATGGGCAAGTCAG___CTTCCAAACAGTTTCATAATGAGGTCCTGAAGGCCCACAATGAGTACCGGCAGAAGCACGGCGTCCCCCCACTGAAGCTCTGCAAGAACCTCAACCGGGAGGCTCAACA|GGCAGCAGAAGAAGCCTTTGTAAATGACATTGACGAGTCGTCCCCAGGCACTGAGTGGGAACGGGTGGCCCGGCTGTGTGACTTTAACCCCAAGTCTAGCAAGCAGGCCAAAGATGTCTCCCGCATGCGCTCAGTCCTCATCTCCCTCAAGCAGGCCCCGCTGGTGCACTGAAGAGCCACaCTGTGGAAACACgACATCTG	in-frame	MGKSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQq|AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH*	.
TALL027	GSG2	ALOX15(10455),PELP1(17025)	+/+	./+	17:3726567	17:4652749	3'UTR	intergenic	deletion	downstream	upstream	4	0	0	217	5	low	.	.	duplicates(10),mismappers(4)	CCTTCAAGACTAAATGTAACACTCCTGCCATGAAGCAAATTAAGAGAAAAATCCAGGAGTTCCACAGGACAATGCTGAACTTCAGCTCTGCCACTGACTTGCTCTGCCAGCACAGTCTGTTTAAGTAAGCTAAATGTATCTTACTGCCCCGAAATGAGAGGAGACTGGTCTTGAAGCCTCTGGTGCTGTTTCAACCTCCATCCCCACAGGAGGGTGGAACTCCCATTCTCACAGGTTTCCAGTCAGCTTTTCAAACAAGAATTTTGTTTCCAAATGGAAACTGAAATATTTGTTGAAATGTTTAAATTTGCTGATAACAAATGTTCTGAAAGAAGTAAACTAGCCGGGCACAGTGGCGTGCGC|CTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGG	out-of-frame	FKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSLFK*akcillprnerrlvlkplvlfqppspqeggtpiltgfqsafqtrilfpngn*nic*nv*ic**qmf*kk*tsraqwra|pavpatreaea	.
TALL027	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511077	7:23357615	exon	intron	deletion	downstream	upstream	0	0	4	9353	1	low	.	.	duplicates(1),mismatches(6)	.	.	.	.
TALL027	EEF1A1P13	TRIO	-/-	+/-	5:14652093	5:14368487	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	24	1	low	.	.	low_entropy(1),mismatches(6)	GTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATT...CAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCtGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTG...|...AAATTGATCAGGAC	.	.	.
TALL027	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	39	154	low	.	.	duplicates(4)	CAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGC...CCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCgGGCC	.	.	.
TALL027	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	1	0	27	14	low	.	.	.	GCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCC	.	.	.
TALL027	EEF1A1P11	DPYD	+/+	-/+	1:96447251	1:97135238	exon	intron	deletion/5'-5'	downstream	upstream	0	0	3	18	0	low	.	.	duplicates(3),mismatches(1)	CTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTtATCAAAAACATGATTACAGGGACATCTC...|...CAAAACCCCGG	.	.	.
TALL027	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	3	0	16	11	low	.	.	.	CTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGG...GCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCC	.	.	.
TALL027	ESYT2	PTPRN2	-/-	-/-	7:158743660	7:158296556	CDS	intron	deletion	upstream	downstream	0	0	3	330	0	low	.	.	mismappers(1),mismatches(1)	CAAGGCCCAGGAGAGCAAG___ATTCGATACAAAACCAATGAACCTGTGTGGGAGGAAAACTTCACTTTCTTCATTCACAATCCCAAGCGCCAGGACCTTGAAGTTGAG___GTCAGAGACGAGCAGCACC...|...TCTGTGGGCGG	.	.	.
TALL027	MOB1B	GRSF1	+/+	-/-	4:70902550	4:70836314	splice-site	splice-site	inversion	downstream	downstream	1	1	1	66	203	low	.	.	duplicates(2)	TGCGGCCACCGAGCAGCCGGCTCTCGGCACCTCCTCCTCCGCCTCCCTGTCTCCTGTTCCATTCGCCTTTCCTCTTCTTTCCTGGCCCACGCCGCTCCGAGGCCTCGCGACCGCCGAGCCTGCAGCCTGCCCCGCGGCCAACATGAGCTTCTTGTT|GAGTCCAAAACTACTTACCTGGAAGACCTTCCACCACCCCCTGAGTATGAATTGGCCCCGTCCAAGTTAGAAGAGGAAGTGGATGATGTCTTTCTtATTCGAGCTCAAGGACTGCCCTGGTCATG...GAGAATGGAATACATTTTCTCCTAAACAGAGATGGGAAACGAAGGGGTGATGCCTTAATTGAAATGGAGTCAGAGCAGGATGTGCAGAAAGCCTTAGAGAAGCACCGCATGTACATGGGCCAGCG	out-of-frame	MSFLl|spklltwktfhhplsmnwprps*	.
TALL027	AC012501.2	GALNT13	-/+	+/+	2:153510977	2:153732769	intron	5'UTR	deletion/read-through/3'-3'	downstream	upstream	1	1	0	31	30	low	.	.	low_entropy(2),mismappers(1)	GAAAATGTTTCTAGAAGGAAAGAGTTACCCAGCAAATACAAGCAGAAGGAGAGAGTGGGCCACTCTGTGGTATCTCGCAATGGAGCAGACACTGTTGGACAAGAGCAGATTCACTGGAGAG|GTAACAAGTTGGAAGACTTTGGATCTCAAGAAAAGTGGATTTTGCCTCTACCGTAGAGATAG___ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGTGCCACATACA___TGGAATGTATC...ATCAAGGAAAGACATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAGCCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCTTACTGCTGTACTTCAGTGAATGTAACAAATGTGATGACAAGA	.	.	.
TALL027	PDCD6IPP2	APBA2	+/+	+/+	15:28838822	15:28875384	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	2	0	156	3	low	.	.	duplicates(1)	AAAAAAATGAAGACGAAACTCCTGCACCTGTATATAGGGCCAAGTCAATTCTGGAGACCTGGGTGTGGGTCAAGCAACCAG|CGCCTCCTGCCAGAGGAAGCATGTGTCTGTGACTTGAAGGCATCTGGAACTCACAAG___TCTCCTGAATATTTACGCGTTGCTGAATCTCCTGTGGACAAACCACCAATAGGCCAGGACTGTCCTGTGGACAGACGGGGTGAGCCTCTTCTTGTGTCTGGAGATTCTGA___AAAGATTTGATCACCAGGAGATTTTTC	.	.	.
TALL027	ST3GAL1	NDRG1	-/-	-/-	8:133464344	8:133295797	intron	intron	deletion/read-through	upstream	downstream	0	0	2	2	6	low	.	.	duplicates(2),mismappers(1),mismatches(1)	CTGGGCCCCTC...|...CAGGCAGGAGGGCGGTAGACATCCTTATAATACCCATCAGCTGCACGGGACCTTCTCCTAAGCTGCCTCAAAAGAACATATCTAAATACAAACCCCCTGTTCTTGCTGCAGAAATGTAGTTTCAAG	.	.	.
TALL027	RP11-499P20.2	RN7SKP189(4500),CYCSP44(114645)	-/-	./+	10:18513139	X:145061937	exon	intergenic	translocation	upstream	upstream	0	0	2	48	4	low	.	.	duplicates(1)	ATCAAAGCTGATTCTCTTACAACTACACGAGAAGTTGCTGAAcAATTCAACATTGACCATTCTATGGTCTTTCTACATTTGAAGCAAATCGGAAAGGTGAAAAAACTCAATAAGTAGGTGCCTC...GCATCTTCTCTTATTCTGTGCAACAACAATGAACCATTTCTCAGTCGGATTGTGACGTGGGACGAAAATTGGATggTATATGACAACCACTGACAACCAGCTCAGCTGTTGGACTGAGAAGCTCC...|...AAAAAAAAAAAAAAAAAAAAAAAGGTTATGGTCACTGTTTGGT	.	.	.
TALL027	HOOK3	PFKFB3	+/+	+/+	8:42897188	10:6213623	splice-site	splice-site	translocation	downstream	upstream	0	2	0	78	48	low	.	.	.	TTCAGCGTAGAGTCGCTGGAGCGGGCGGAGCTGTGCGAGAGCCTCCTCACTTGG|CCTGTGGGCCAAAGCTGACCAACTCCCCCACCGTCATCGTCATGGTGGGCCTCCCCGCCCGGGGCAAGACCTACATCTC...GGAGGCTGTGAAGCAGTACAGCTCCTACAACTTCTTCCGCCCCGACAATGAGGAAGCCATGAAAGTCCGGAA___GCAATGTGCCTTAGCTGCCTTGAGAGATGTCAAAAGCTACCTGGCGAAAGAAGG...GCG___GTTTTCGATGCCACCAATACTACTAGAGAGAGGAGACACATGATCCTTCATTTTGCCAAAGAAAATGACTTTAAGGTGAGCTGAGCGTCTTGTGTTGTGCTAGAGGGCTCGGGAGAGAGG	out-of-frame	FSVESLERAELCESLLTW|pvgqs*	.
TALL027	NOC4L	CDK2AP1	+/+	-/-	12:132144974	12:123267282	splice-site	splice-site	inversion	downstream	downstream	0	2	0	136	204	low	.	.	duplicates(1)	GCGGGGAGAGCTGTTTGTGGGCCAGCTGCCCTCTGAGGAGATGGTCATGACAG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGACTACGG...CCAGGTGCCCCAAAGCAAATACGCGGAGCTGCTGGCCATCATTGAAGAGCTGGGGAAGGAGATCAGACCCACGTACGCAGGGAGCAAGAGTGCCATGGAGAGGCTGAAGCGCG___GCATCATTCACGC	in-frame	RGELFVGQLPSEEMVMT|aGSVHSPSTSMATSSQYRQLLSDY	.
TALL027	SETD8	CDK2AP1	+/+	-/-	12:123384208	12:123267282	splice-site	splice-site	inversion	downstream	downstream	1	1	0	9	204	low	.	.	duplicates(1)	CGGGAGGCGGCGCCAATCGGGGCGAGCAGCTGGAGCCCGGCGGAGCAGTTGGCTGAGTTGTTGCAACTTTTTTCGAAAGCTGGGTTTCCCGGGAGATCCCAGGCGGTGACAGAGTGGAGCCATGGCTAGAG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCAC...GGCCATCATTGAAGAGCTGGGGAAGGAGATCAGACCCACGTACGCAGGGAGCAAGAGTGCCATGGAGAGGCTGAAGCGCG___GCATCATTCACGCTAGAGGACTGGTTCGGGAGTGCTTGGCAGAAAC	in-frame	MAR|aGSVHSPSTSMATSS	.
TALL027	EZH2	ZNF398	-/-	+/+	7:148884164	7:149153945	splice-site	splice-site	inversion	upstream	upstream	0	2	0	98	19	low	.	.	duplicates(4)	GGAGCCCCGGCGGCGGCGGCGGCGGCGCGCGGGGGCGACGCGCGGGAACAACGCGAGTCGGCGCGCGGGACGAAG|ACATCTGAATGGGACTCCGAGTGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTAC...GCAGACAGCAGCTATCTCTCTGTGGACAGTGGTGGCCGCCGTGCAGGCTATAGAGAGGAAGGTGGAGATCCACAGCCGGCGACTCCTACACCTaGAAGGTCGGACAGGGACAGCAGAGAAGAAACTAGCCAGCTGTGAAAAGACAGTTACCGAGCTTGGGAACCAGCTGGAGGGCAAGTGGG	.	.	.
TALL027	GRAMD4	CTD-2517M22.14	+/+	-/-	22:46674750	8:144499522	splice-site	splice-site	translocation	downstream	downstream	0	1	1	945	47	low	.	.	duplicates(3)	GTGGAAAGTGTGACAGGCGGGCCTTCTCCCATTAGTGTGCGAGAATGGCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTGCTCTACGTCACGGAGAA|ATGCCTGGAGCAAAGGGGAAGGGAGGAGGCTCATGGACCCTCCCTGCTCAGAGTTCCCCCCGCTCTACGTCCCTCTGTGTTAA...AG___GCCTCCCGGGAGGGCTCCTGTCCACATGGAAAGATGCAGGCCAGACACTGCCGGCTCCTCTTTACTCTCTGCTCCGGAGGGAGGCAGGAAGGAGTCTCAAGGGCCACCACAGTGCCTCTTCCC	out-of-frame	MPTDYIRNGVLYVTEk|cleqrgreeahgpsllrvppalrpsvl	.
TALL027	BAG4	RAB11FIP1	+/+	-/-	8:38177139	8:37877551	splice-site	splice-site	inversion	downstream	downstream	2	0	0	176	342	low	.	.	duplicates(1)	CGGGAAGCGCTTCAGGGCAGCGGATCCCATGTCGGCCCTGAGGCGCTCGGGCTACGGCCCCAGTGACGGTCCGTCCTACGGCCGCTACTACGGGCCTGGGGGTGGAGATGTGCCGGTACACCCACCTCCACCCTTATATCCTCTTCGCCCTGAACCTCCCCAGCCTCC...GGCGGAGGAGGCGATGGCTACTATCCCTCGGGAGGCGCCTGGCCAGAGCCTGGTCGAGCCGGAGGAAGCCACCAG|GTGGTATAAGTTGAAATCCAAACCAGGAAAGAAGGACAAGGAGCGAGGAGAAATTGAGGTTGACATCCAGTTTATG	out-of-frame	GGGGDGYYPSGGAWPEPGRAGGSHQ|vv*	.
TALL027	XPO1	VIM	-/-	+/+	2:61493894	10:17237230	splice-site	splice-site	translocation	upstream	upstream	0	2	0	549	4602	low	.	.	.	TTTTGATGTTCCTCCCAGGAGACAGCTATATTTGCCCATGTTATTCAAG|GTTATCAACGAAACTTCTCAGCATCACGATGACCTTGAATAAAAATTGCACACACTCAGTGCAGCAATATATTACCAGCAAGAATAAAAAAGAAATCCATATCTTAAAGAAACAGCTTTCAAGTGCCTTTCTGCAGTTTTTCAGGAGCGCAAGATAGATTTGGAATAGGAATAAGCTCTAGTTCTTAACAACCGAC	in-frame	FDVPPRRQLYLPMLFK|VINETSQHHDDLE*	.
TALL027	DNM2	ILF3	+/+	+/+	19:10718403	19:10670516	splice-site	splice-site	duplication	downstream	upstream	0	2	0	509	1533	low	.	.	.	CCTGGACCTGCCGCAGATCGCTGTAGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTGGAGAACTTCGTGGGCCG|AGTTGAAGTATTGATAACACCAAGGAACTCTATCACAATTTGAAAAGATAAGCAAAAGTTTGATTTCCAGACACTACAGAAGAAGTAAAAATG___CGTCCAATGCGAATTTTTGTGAATGATGACCGCCATGTGATGGCAAAGCATTCTTCCGTTTATCCAACACAAGAGGAGCTGGAGGCAGTCCAGAACATGGTGTCCCACACGGAGCGGGCGCTCAAAGCTGTGTCCGACTGGATAGACGAGCAGGAAAAGGGTAGCAGC	out-of-frame	LDLPQIAVVGGQSAGKSSVLENFVGr|vevlitprnsiti*	.
TALL027	WDR33	BIN1	-/-	-/-	2:127708677	2:127059155	splice-site	splice-site	deletion	upstream	downstream	0	1	0	62	228	low	.	.	duplicates(5),mismatches(1)	TGGAGGCCCCAGGAGGCCCTTCTGAAGACCGAGGAGGCAAAG|TGACAACGCGCCTGCAAAAGGGAACAAGAGCCCTTCaCCTCCAGATGGCTCCCCTGCCGCCACCCCCGAGATCAG	out-of-frame	EAPGGPSEDRGGK|vttrlqkgtralhlqmaplpppprs	.
TALL027	NCOR2	CDK2AP1	-/-	-/-	12:124466173	12:123267282	splice-site	splice-site	deletion	upstream	downstream	1	0	0	117	204	low	.	.	.	CGCCCGAGCCTGAGAAGCCCGTGTCACCGCCGCCCATCGAGTCGAAGCACCGCAGCCTGGTGCAGATCATCTACGACGAGAgCCGG|CTGGGAGTGTCCACTCGCCTTCCtCCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAG	out-of-frame	PEPEKPVSPPPIESKHRSLVQIIYDEsR|lgvstrlppawqrlhstascs	.
TALL027	NCOR2	CDK2AP1	-/-	-/-	12:124398119	12:123267282	splice-site	splice-site	deletion	upstream	downstream	1	0	0	94	204	low	.	.	.	ATGAGGCCAACAGCGAGGAGGCCATCACCCCCCAGCAGAGCGCCGAGCTGG___CCTCCATGGAGCTGAATGAGAGTTCTCGCTGGACAGAAGAAGAAATGGAAACAGCCAAGAAAG|CTGGGAGTGTCCACTCGCaTTCCACCAGCATGGCAACG	in-frame	EANSEEAITPQQSAELASMELNESSRWTEEEMETAKK|aGSVHShSTSMA	.
TALL027	NELFA	PCGF3	-/-	+/+	4:2008750	4:730630	splice-site	splice-site	inversion	upstream	upstream	1	0	0	177	212	low	.	.	duplicates(1)	GTGGGCGCCGCCCAGCATCGCGTCCCTGCTCACGGCCGCGGTCATCGACAACATCCGTCTCTGCTTCCATGGCCTCTCGTCGGCAGTGAAGCTCAAGTTGCTACTCGGGACGCTGCACCTCCCGCGCCGCACGGTGGACGAG|GCGTCACAATGTAGCAGGGACCCCAGGCGTCGTGCTCAG	out-of-frame	WAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDE|asqcsrdprrra	.
TALL027	NELFA	PCGF3	-/-	+/+	4:2008750	4:761279	splice-site	splice-site	inversion	upstream	upstream	1	0	0	177	648	low	.	.	duplicates(1)	CACGGACGAGCTGTGGGCGCCGCCCAGCATCGCGTCCCTGCTCACGGCCGCGGTCATCGACAACATCCGTCTCTGCTTCCATGGCCTCTCGTCGGCAGTGAAGCTCAAGTTGCTACTCGGGACGCTGCACCTCCCGCGCCGCACGGTGGACGAG|GTGAGCATCTGCCTGGAGTGTAACAGCAGCAAACTGCGC	in-frame	TDELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDE|VSICLECNSSKL	.
TALL027	FXR1	KLHL24	+/+	+/+	3:180912736	3:183650296	splice-site	splice-site	deletion	downstream	upstream	0	1	0	657	259	low	.	.	.	GCGGAGCTGACGGTGGAGGTTCGCGGCTCTAACGGGGCTTTCTACAAG|CCACATAAAGAAGATCCCTAATAGTCATTTCTCAACAATTATATAGTCAACTGATGTAACAATGGTACTAATATTGGGACGCAGACTAAACAGAGAGGATCTTGGGGTGCGTGATTCCCCAGCAACTAAG	out-of-frame	AELTVEVRGSNGAFYK|phkedp*	.
TALL027	ASPSCR1	SELO	+/+	+/+	17:81985607	22:50208536	splice-site	splice-site	translocation	downstream	upstream	1	0	0	166	180	low	.	.	duplicates(1)	GGCGGCGGAGGCTCCGCGGTGTCGGTGCTGGCCCCGAACGGCCGGCGCCACACGGTGAAGGTGACGCCGAGCACCGTGCTGCTTCAG___GTTCTGGAGGACACGTGCCGGCGGCAGGACTTCAACCCC...GAGGTTGCAGGACTCTTTCTGTTCAGGCCAGACCCTCTGGGAGCTTCTCAGCCATTTTCCACAGATCAG|GTTTGGATCCTTTGAGATTTTTAAGTCTGCAGATGAGCACACAGGGCGTGCAGGCC	in-frame	RLQDSFCSGQTLWELLSHFPQIr|FGSFEIFKSADEHTGRAG	.
TALL027	HP1BP3	RCC2	-/-	-/-	1:20787195	1:17422836	splice-site	splice-site	deletion	upstream	downstream	0	1	0	388	195	low	.	.	.	CCGAGAGGCCGTGCGGGACGCGGGCGCCAGGACCGGCCGAACGCAGAG|GTCGAAATGAGAAGGGGCAGCTGGGACATGGTGACACCAAGAGAGTAGAAGCCCCTAGACTCATCGAGGGTCTTAGCC...CCCCGGCGAGTGGCCATCTTCATTGAGAAGACGAAAGATGGACAGATTCTGCCTGTACCAAACGTGGTTGTACGAGACGTGGCCTGTGGCGCTAACCACACG___CTGGTCCTGGACTCCCAG	.	.	.
TALL027	HP1BP3	RCC2	-/-	-/-	1:20787195	1:17416646	splice-site	splice-site	deletion	upstream	downstream	0	1	0	388	218	low	.	.	.	GCGGAGGCGACTAGCGGCGGCGGGAGCGGCGCCGAGAGGCCGTGCGGGACGCGGGCGCCAGGACCGGCCGAACGCAGAG|GACACAACTCAGATGGGAAGTTCATCGCCCGGGCACAGCGGATAG...AAGACGAAAGATGGACAGATTCTGCCTGTACCAAACGTGGTTGTACGAGACGTGGCCTGTGGCGCTAACCACACGGTGAGGCTCGGCTTTTCTCACTTCCTGAGAGTCGCACCAGGATGGAAGGGG	.	.	.
TALL027	CDK12	FBXL20	+/+	-/-	17:39463117	17:39275100	splice-site	splice-site	inversion	downstream	downstream	0	1	0	156	57	low	.	.	duplicates(2)	TTCCTGAGCAAGCGGTCTCTGAGTCGGAGTCCACTCCCCAG|CAAATCACAGATGAAGGTCTCATTACTATATGCAGAGGGTGCCATAAGTTACAATCCCTTTGTGCCTCTGGCTGCTCCAACATCACAGATGCCATCCTGAATGCTCTAGGTCAGAACTGCCCACGGCTTAG___AATATTGGAAGTGGCAAGATGTTCTCAATTAACAGATGTGGGCTTTACCACTCTAGCCAGG___ATAACAGATAGC	out-of-frame	FLSKRSLSRSPLPs|ksqmkvsllyaegaisynpfvplaaptsqmps*	.
TALL027	JARID2	ABRACL	+/+	+/+	6:15487542	6:139034155	splice-site	splice-site	deletion	downstream	upstream	0	1	0	120	364	low	.	.	duplicates(1)	CTTGCTGCCACCCATCACCACCCCCCTCTGCATCGGTCGGCTCAGGACTTACGGAAACAG|GCAGCAATGAATGTGGATCACGAGGTTAACCTCTTAGTGGAGGAAATTCATCGTTTGGGTTCAAA...AATGTGCCAACCTCTTTGAAGCATTGGTAGGAACTCTTAAAGCTGCAAAACGAAGGAAGATTGTAACATATtCAGGAGAGCTGCTTCTGCAAGGTGTTCATGATGATGTTGACATTATATTACTGC	in-frame	LAATHHHPPLHRSAQDLRKQ|aaMNVDHEVNLLVEEIHRLGS	.
TALL027	JARID2	ABRACL	+/+	+/+	6:15246584	6:139034155	splice-site	splice-site	deletion	downstream	upstream	0	1	0	135	364	low	.	.	.	GAGGAATATCATTCAGAAGAAATAC|GCAGCAATGAATGTGGATCACGAGGTTAACCTCTTAGTGGAGGAAATTCATCGTTTGGGTTCAAAAA___ATGCTGATGGAAAGTTAAGCGTGAAATTTG...ATATCTTTATGTAaTGCCATTTTTTGTTTCTGGTAAACTGGAATATAAAGTGAAAGAACAAACATTTGAACATACTTAATGTATTTTTATAGAACTTTGTAAACGAAAGGAGATTCATGTTTTAG	in-frame	RNIIQKKY|aaMNVDHEVNLLVEEIHRLGSKNADGKLSVKF	.
TALL027	BANP	SLC7A5	+/+	-/-	16:88006265	16:87841155	splice-site	splice-site	inversion	downstream	downstream	1	0	0	88	199	low	.	.	.	GTGCCTGGGCGTCGGCAGAACACCATTGTGGTGAAGGTGCCGGGCCAAGAAGACAGCCACCACGAGGACGGGGAGAGCGGCTCGGAGGCCAGCGACTCTGTGTCCAGCTGTGGGCAGGCGGGC...ATCGGGAGCAACGTCACGCTCATCACCCTGAACTCGGAAG|GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGAACATTGTGCTGGCATTATACAGCGGC	in-frame	IGSNVTLITLNSE|gDVSNLDPNFSFEGTKLDVGNIVLALYS	.
TALL027	FUBP1	SLC25A38	-/-	+/+	1:77955255	3:39396398	splice-site	splice-site	translocation	upstream	upstream	1	0	0	525	704	low	.	.	.	ATAGTACTTCCCTCCTACCCTCACTGTCACATTGCAGGCCCCTGCCAGCTCCTGCACCCAAGGAAACGGCCAAAATTGCCTTTTAAAAACTTTAATTCTGTTTTTTGTTTTGTTTTGCTTGAACA...GAGATCAGCAGAATCCAGCCCCAGCTGGACAGGTTGATTATACCAAGGCTTGGGAAGAGTACTACAAGAAAATGG|GACTATGGACTACGTGGCTTCTTCCAAGGTGGCATCCCCCGAGCCCTCCGC	out-of-frame	DQQNPAPAGQVDYTKAWEEYYKKM|glwttwllprwhppspp	.
TALL027	SETD8	SBNO1	+/+	-/-	12:123384208	12:123350441	splice-site	splice-site	inversion	downstream	downstream	0	1	0	9	91	low	.	.	duplicates(2)	CCCAGGCGGTGACAGAGTGGAGCCATGGCTAGAG|ATGGTGGAGCCAGGGCAAGATTTACTGCTTGCTGCTTTGAGTGAGAGTGGAATTAGTCCGAATGACCTCTTTGATATTGATGGTGGAGATGCAGGGCTTGCAACTCCAATGCCTACCCCGTCAGTTCAGCAG___TCAGTGCCACTTAGTGCATTAGAACTAGGTTTGGAGACC	out-of-frame	MAR|dggararftaccfe*	.
TALL027	MOB3A	AP3D1	-/-	-/-	19:2096226	19:2129457	splice-site	splice-site	duplication	upstream	downstream	0	1	0	14	108	low	.	.	.	CGAAGGCGGGCGGCAGAGGCGATCAG|GGGTTCAGTCGGCTGCCGTCAATGTCATCTGCGAGCTGGCCAGACGCAACCCTAAGAACTACCTGTCCCTGGCCCCGCTCTTTTTCAAGCTGATGAC...ATGAATGTGTGAACACCGTGATTGCAG___TGCTCATCTCGCTGTCCTCCGGCATGCCCAACCACAGCGCCAGCATCCAG___CTTTGTGTTCAGAAATTAAGGATATTGATCGAGGACTCCGATCAGA	.	.	.
TALL027	UVSSA	MAEA	+/+	+/+	4:1355245	4:1332757	splice-site	splice-site	duplication	downstream	upstream	0	1	0	39	388	low	.	.	duplicates(1)	CTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGGACGAGGTGCGCCAGGCCATGGGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCGTACAAG___GACCTTCTGG	out-of-frame	ELELVLRKYKELDIEPEGGERhR|tckkalqpsrrepagrgapghghaglparhahlpvqgps	.
TALL027	UVSSA	MAEA	+/+	+/+	4:1355245	4:1339074	splice-site	splice-site	duplication	downstream	upstream	1	0	0	39	636	low	.	.	.	CGTGGATCCAG___CGCTTCACCCGCGTCGGGACCCACGGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAG	in-frame	WIQRFTRVGTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGERhR|SLLSIRQDDKVVCPRTK	.
TALL028	STMN1	SPI1	-/-	-/-	1:25904664	11:47360040	splice-site	splice-site	translocation	upstream	downstream	75	178	18	4114	1024	high	.	.	duplicates(129),mismatches(1)	CGCACTAGAAGGGGCACTGCTCTGTCCGAGTGCTGCCCTTGGGGCGAGGCGGGCATGTGGCTCTACAAGGTGGAGTCCAGGCGGCCAAAGTTTGGAAAG___...CGCTTTTGTGCGCGCCCGGGTCTGTTGGTGCTCAGAGTGTGGTCAGGCGGCTCGGACTGAGCAG___GACTTTCCTTATCCCAGTTGATTGTGCAGAATACACTGCCTGTCGCTTGTCTTCTATTCACCATGGCTTCTTCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAG	in-frame	MASS|dHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLYQFLLDLLR	.
TALL028	STMN1	SPI1	-/-	-/-	1:25906389	11:47360040	splice-site	splice-site	translocation	upstream	downstream	0	1	0	196	1024	low	.	.	.	CAGGCGGCTCGGACTGAGCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCC...CCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAG	.	.	.
TALL028	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	14	22	15	101	98	high	.	.	duplicates(1),low_entropy(3),mismappers(1),mismatches(1)	GTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGG	.	.	.
TALL028	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	5	2	0	38	28	high	.	.	mismatches(1)	CTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGG	.	.	.
TALL028	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	9	33	5	109	55	medium	.	.	low_entropy(4),mismappers(4),mismatches(1)	ACGAGTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG___GCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGG...GCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAG	.	.	.
TALL028	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	1	6	112	medium	.	.	low_entropy(1)	AAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTG...GAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCC	.	.	.
TALL028	TSN	TSN	+/.	+/.	2:121756873	2:121757685	intron	intron	duplication	upstream	downstream	2	0	1	7	9	medium	.	.	.	.	.	.	.
TALL028	ALOX5	OR13A1	+/-	-/-	10:45405928	10:45307808	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	2	3	4	20	29	low	.	.	low_entropy(1),mismappers(1)	GTGAGTTGAGCCCAGACACTCGAATCCAGAGCTCATGACTGCCATCCTATGCCAGCTTGTACCGTGGGTATCATCATCCCTGTCATCCAAGTCAGGAGGAAAGACATCATCCCTGTCATCCAAGTCAGGAACGAATGCTACCGGGAGAGTTCCACCCAG|AAGCTTGAGTGCCCAAGGGTTTGATAAATGTGGAAAATAACCGCTGTTCGAATATCCTGTTGGCCTGCTGGTGAGATGTCATCGTGTTGTCTGAATGCA___...GAAATGACTGGCTGAGGCTGTAAAGAAATCTTG...___TGATGTGAGGTGTGGAAGAAACACGGGAGCAGCCTTCCTCAGGACACCTCTTGTTTATCTCTCTAGCTCTGAAATCACATGAAGCTGTGGATGGAGAG	.	.	.
TALL028	CDK20	AL160279.1(7244),CTSL3P(20216)	-/-	./-	9:87967122	9:87752237	3'UTR	intergenic	deletion/read-through	upstream	downstream	0	0	7	36	23	low	.	.	.	CTGCCCCTTAGCCCTTGCGAGGGTTGGTCTCGAGGCAGAGGTCATGTTCCCAGCCAAGAGTATGAGAACATCCAGTCGAGCAGAGGAGATTCATGGCCTGTGCTCGtTG...TTCTGTGTGCTACTGACGTACCCATCAGGACAGTGAGCTCTGCTGCCAGTCAAGGCCTGCATATGCAGAATGACGATGCCTGCCTTGGTGCTGCTTCCCC...|...GAGAACTAACCTACCTTCTGAACAAGGAGTCTGATGTTTCTTTGGGATCATTGTTAGAATGCCAGATAAAATAACATGTAAGAGTTCATTGTAGATCACACAGTCTGATCCGAG	.	.	.
TALL028	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	2	2	2	66	16	low	.	.	mismappers(2)	ACCGTCCTGGGCCTGGTGCAGAACATGCGTGCGTTTGGCGGGATCCTGGTG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTG...___GGGAGTTCCCCGGCACATGCTCTCTCTTGCCTGCC	out-of-frame	TVLGLVQNMRAFGGILVPGPCQWLGALWELRAAGVLGQQLR*LCGCPGHSVELDGGEQLAGVSGCISALLRP|*	.
TALL028	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	4	2	0	19	9	low	.	.	low_entropy(2)	CCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGAT...GTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAG	out-of-frame	HSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL028	FAM129C	KCNN1	+/+	+/+	19:17552670	19:17976056	3'UTR	intron	deletion	downstream	upstream	6	0	0	1023	3	low	.	.	mismappers(4),mismatches(8)	ACAAGGTCTCGCTATGCTGCCCAGGCTGATCTCAAACTCCTGGACTCAAGCAATCCTCCTGCCTTGGCCTCCCAAAGTGCTAGGATTATAGGAGTGATCCACTATGTCCAGCCTCCAAATCCTTTCTAAACACTAGGACTTTTCATGAAAAGAAAAAAGCTATGCCAGTTAGACACACACAGAAATCTCATGATTTTATTTTGAATTTCTTTGACTAAATTGAACTTACAAATAAGTTTATTATGGCCAGGCGTGGCAGTGCACAC|CTGTGATCCCAGC?CTTTGGGAGGC?gAGGCGGG...TGGGAGGCTGAGGCGGGCAGATCGCTTGAGCTCAgGAGTTCgAGACCAGCCTGGcggACgTGGTGAgACCtCATCTcTACAAAAAATACAgAA...TGGGAGGCTGAGGCGGGCGGATCgCtTGAGcTCAGGAGTTcGgGACCAGCCTGGCggACgTGGTGggACCTCaTCTCTACgAAAAATACAgAA	.	.	.
TALL028	LINC01226	LINC01225	+/.	+/.	1:31523622	1:31524541	exon	intron	duplication	upstream	downstream	3	3	0	55	33	low	.	.	.	.	.	.	.
TALL028	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	1	68	44	low	.	.	low_entropy(1)	CTTTGTAG___TTTTTGGCCATTTGATTGTGATGCATCTGG___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___TTGGATTTCTTCTATGACTG___...CCTGGATTTCACACAG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGC...CATTATAATACAGAGATCTTGAAAA___GTATTGATAATGAGTGGAGAAAGACTCAATGCATGCCACGGGAGGTGTGTATAGATGTGGGGAAGGAGTTTGGAG	.	.	.
TALL028	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	3	0	10	6	low	.	.	duplicates(2)	CACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAG...GTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGC	.	.	.
TALL028	MPLKIP	CDK13	-/-	+/-	7:40134229	7:40094527	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	2	2	0	153	98	low	.	.	.	CCCGGGCGGGGGCGGACCACGGCCGCCCTCCCCTCGAGACGGGTACGGGAGTCCGCACCACACGCCGCCGTACGGGCCCCGGTCTAGGCCGTACGGGAGC...CGTCCCCTGGCGGCTACCCTGGCTCCTACTCCAGGTCCCCCGCGGGGTCCCAGCAGCAATTCGGCTACTCCCCAGGGCAGCAGCAGACCCACCCCCAG|TGGTGGAGCAGAACTGCTTCCTAGACCATCATTGCTAACATAAGGAGCAGAAGAGAAAGtAG	out-of-frame	SPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQ|wwsrtas*	.
TALL028	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	2	0	13	85	low	.	.	duplicates(1)	TGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCC...AGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGC	out-of-frame	TAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQH	.
TALL028	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	66	70	low	.	.	.	CTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAG	.	.	.
TALL028	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	108	138	low	.	.	.	TGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCgTTCCTTAGTGCCC	out-of-frame	VGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL028	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	2	1	0	73	7	low	.	.	.	TTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTGCAGCTACTGAAAGTTTAAAGTTTAAGTAAAAAAATGAATAGCTTTCTTCAG___CC	out-of-frame	YFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|maiciqfilm*	.
TALL028	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	80	138	low	.	.	.	ATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTA...ATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGG	out-of-frame	ILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL028	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	73	138	low	.	.	low_entropy(1)	GTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCA	in-frame	VVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLT	.
TALL028	METTL13	DNM3	+/+	+/+	1:171814023	1:171841708	exon	CDS	deletion/read-through	downstream	upstream	0	1	2	5	1	low	.	.	.	TGACTCCTGAAG___GGTCACCAGATCCTCCTCCTCCTGCAGGCTCACCATGGCTTCAAAAGAATTCAGTGTTCTGCAAGACTCTTCAGTCCTACTACTGCTCTCTATTGAGATTGGATCATGTGCCCATAATCCAAGAGATTTCCTTCAAATCTGTGTACCAG|GACGCGTTTTCGGCGCTGGGACAGAGCTGCCTGCTGGAGCTGCCGCAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTCGAGAACTTCGTGGGCAG___GGACTTTCTCCCTCGAGGGTCGGGCATTGTAACAAGACGACCTCTTGTGCTGCAGCTTGTTACTTCTAAAGCAG___AATATGCCG	in-frame	TPEgspdppppagspwlqknsvfcktlqsyycsllrldhvpiiqeisfksvyq|DAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVTSKAEYA	.
TALL028	ZNF80	TIGIT	-/+	+/+	3:114237444	3:114295545	5'UTR	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	1	0	12	6	low	.	.	mismappers(1)	GTTACAGCTCTTAAGGCTTAAGGCGGCGCGTCTGGAGTTGTTCGTTCCTCCCGGTGGGCTCGTGGTCTCGCTGGCTTCAGGAGTGAAGCTGCAGACGTTTGCG|GAATGATGACAGGCACAATAGAAAC...GCAGAGAAAGGTGGCTCTATCATCTTACAATGTCACCTCTCCTCCACCACGGCACAAGTGACCCAGGTCAACTGGGAGCAGCAGGACCAGCTTCTGGC	.	.	.
TALL028	PDS5B	RP11-380B4.3(459),LINC00423(88794)	+/+	./+	13:32773324	13:32788637	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	1	98	2	low	.	.	mismatches(1)	ACAGAAAGGACGAGGAAGACCATCAAAAACGCCATCACCATCACAACCAAAAAAAAATGT___CCGTGTAGGACGCTCCAAACAAGCAGCTACTAAGGAAAATGATTCAAGTGAAGAAGTAGATGTGTTTCAGGGTAGCTCTCCTGTCGATG...ACAGAGGAGGAGGAAGTTTCTACAGTAAAT|CCCTTCTACCCACCATCATCATTGTGATACATCATTTTTTCAATTACCTGGGATATAGACTATCAAGGAG	out-of-frame	TEEEEVSTVN|pfyppssl*	.
TALL028	RNF11	TTC39A	+/+	-/+	1:51270125	1:51288120	splice-site	3'UTR	deletion/read-through/5'-5'	downstream	upstream	1	0	1	134	1	low	.	.	.	CGAGTCTCAGTCCGACCGGGCTAGCTTTGGCGAGGGGACGGAGCCGGATCAGGAGCCGCCGCCGCCATATCAG___G...CTCGGCTAGCAACTCAGCTGACTGAAGAGGAACAAATTAGGATAGCTCAAAGAATAGGTCTTATACAACATCTGCCTAAAGGAGTTTATGACCCTGGAAGAGATGGATCAGAAAgAAAGATCCGGGA|CTGTCTCTGTCTTCCAGCCCGGAACTGCTGCACAAAGCTACAAGGACACTGATGAGACCATG	out-of-frame	RLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSErKIRd|clclparncctklqgh*	.
TALL028	LINC00674	BPTF	+/+	+/+	17:68101959	17:67853940	splice-site	splice-site	duplication	downstream	upstream	0	1	0	85	50	low	.	.	.	GGAGGCCGTAGGAACGGGCCTGTCGAAGTGCGCCTGACAG|GTAGGCGAAAACCAAGAGTACATCGGCCTCGTTCTCCTATATTGGAAGAAAAAGACATCC...AGCCAAGAGCAGTGCACACTCATGGCAGAGATGCATGTTGTGtTTTTGAAAGCAGTTCTGCGTGAAGAAGACACTTCCAATACTACCTTTGGACCTGCTG	.	.	.
TALL028	LINC00674	BPTF	+/+	+/+	17:68114525	17:67982252	splice-site	splice-site	duplication	downstream	upstream	0	1	0	134	260	low	.	.	.	AAAATTTCATGGAGAAGAAGGCCTTGACTACGGAGGGGTTGCCAG|GTCTCATAACAACAAACTGCAGTCTACAGCTTCTTAAAGTTCAGCGTGTTAACCTAACATAAAACACAGCAAGAATCTGGTTGTCTGAACTATTTTAAATTAAGGAGCCAGATGTTTTTAGTCAGGCTATCCTGACAAGACTTG	.	.	.
TALL028	INSIG1	IKZF1	+/+	+/+	7:155298697	7:50319048	splice-site	splice-site	duplication	downstream	upstream	0	1	0	463	324	low	.	.	.	ATCTTTTCCTCCGCCTGGTGGGTCCCTCCCTGCTGCGGGACAGCAGCTG|ATAACCTGAGGACCATGGATGCTGATGAGGGTCAAGACATGTCCCAAGTTT...AAGCGATACTCCAGATGAGGGCGATGAGCCCATGCCGATCCCCGAGGACCTCTCCACCACCTCGGGAGGACAGCAAAGCTCCAAGAGTGACAGAGTCGTG	in-frame	IFSSAWWVPPCCGTAA|dnlrtMDADEGQDMSQV	.
TALL028	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89098591	splice-site	splice-site	inversion	upstream	upstream	0	1	0	152	69	low	.	.	.	CGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GTGTCCCACCGGCCTTCCGGGTTCCAGCGCC...GGATGAGCATTTGCATTGCCTGCACCTTATCGTGCCCTTCCACCTGCTGAAGCAGCTGTGCCTGCCGCTCTTGTGAACTGCGAACTTCCCCTTACCTCC	.	.	.
TALL030	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	8	3	107	84	high	.	.	duplicates(29),low_entropy(1),mismatches(1)	AG___...GGTCGGAGAGAGAGC?TTTTGATCATCTTGCGGGGC?GGGGGGG?AA...___...GGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCG...CCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACC	.	.	.
TALL030	INTS6	SPRYD7	-/-	-/-	13:51374208	13:49931134	splice-site	splice-site	deletion	upstream	downstream	0	3	3	88	34	high	.	.	duplicates(27)	CCGGAGAACCAAATATGCAAGGGATCCCTAAAAGACGTCGGTGTATGTCTCCACTACTAAGAGGCAGACAGCAGAATCCTGTTGTAAACAATCATATTGGGGGAAAAGGACCACCTGCACCTACAACTCAAGCACAGCCAGATCTTATTAAACCTCTTCCTCTTCATAAAA|GAACAGATGTTGTTATTGTAAAGAATGGAAGAAGAATATGTGGAACAGGAGGTTGTTTAGCCAGCGCACCTTTACATCAAAACAAAAGCTATTTTGAATTCAAAATCCAGTCCACAG___GAATCTGGGGTATTGGTGTTGCAAC...___ATTCCTCTTGGCCGAGATATGCACAGTCTGGTGATGAGAAATGATGGAGCCCTTTACCACAAaAATGAAGAGAAAAATAGGCTGCCAGCAAACAGTCTTCCGCAGGAAGGAGATGTGGTG___GGTATTACTTATGACCATGTCGAATTAAATGTATAaTTGAAaGGAAAAAACATGCATTGTCCAGC	in-frame	GEPNMQGIPKRRRCMSPLLRGRQQNPVVNNHIGGKGPPAPTTQAQPDLIKPLPLHK|rTDVVIVKNGRRICGTGGCLASAPLHQNKSYFEFKIQSTGIWGIGVA	.
TALL030	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	10	18	3	231	175	medium	.	.	duplicates(102),mismappers(1),mismatches(1)	CGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___...GCATTTGGGC...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACC	.	.	.
TALL030	TPST1	TYW1	+/+	+/+	7:66292624	7:67183126	intron	splice-site	deletion	downstream	upstream	0	4	0	16	58	medium	.	.	duplicates(12)	AGCCAGGTGTGGGATATAGTCTCGTGGTGCGCCGTTTCTTAAGCCgGTCTGAAAAGCGCAATATTcGGGTGGGAGTGACCCGATTTTCCAG|CAACAACGAACTGTCTACAGACTGACGCTCGTGAAAGCATGGAAtGTGGACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGaAATCCTGACTTCATCGAAGTGAAG___GGCGTTACCTACTGCGGAGAAAGTTCAGCAAGCAGTCTTACCATGGCCCACGTGCCCTGGCATGAGGAAGTGGTACAGTTTGTCCgCGAGcTGGTGGATCTGATCCCCGAATATGAAATTGCATGTGAACACGAAC	.	.	.
TALL030	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	29	198	medium	.	.	duplicates(16)	TG___GAAGGAAAATACATGTACAGCCAACTTCCTTGAGGGTTCGTTCTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGG...CAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATT...GCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTG	.	.	.
TALL030	TMEM222	GAPVD1	+/+	+/+	1:27328265	9:125305063	intron	splice-site	translocation	downstream	upstream	0	2	0	8	21	medium	.	.	.	GTGgGGAGTCAGCTGTGCCATGCTCTCTGGGAAGAGTGTTCCAGACGGAGGAGAGGGCAGATACAGA|GcAGGCCGCCTTTTGCAGCAGTTAGCAATGACTGGCTCTGAAGAGGGAGATCCCCGAACAAAGAGC...GTGTTGCCGCTTTCCTTGATGTTGTGATTGGGGGCCGTGCAGTGGAGACCCCTCCATTGTCTTCCGTCAATCTTCTGGAAGGATTGAGCAGAACTGTGGTTTATATAACCTACAGTCAGCTTATTACTCTG___G	.	.	.
TALL030	POLR1E(1311),RP11-613M10.6(4142)	POLR1E	./+	+/+	9:37505008	9:37503043	intergenic	splice-site	duplication	downstream	upstream	0	2	0	32	82	medium	.	.	duplicates(8)	GATGGAGAAGCTGTGTCCAGAGCGGTGCTATAAGGACAGGAGTGTGACACAGGAAGGCTTAG|GATGATGGAGATAGCCAAAGCCATGAGGCTGAAGATCTCCAAAAGAAGGGTGTCTGTGGCCGCCGGCAGTGAAGAAGATCACAAaCTGGGCACCCTGTCCCTCCCGCTGCCTCCAGCCCAGACCTCAGACCGCCTGGCAAAGCGGAGGAAGATTACCTAGACGCAT	.	.	.
TALL030	HBG1	HBB	-/-	-/-	11:5249751	11:5226967	CDS	CDS	deletion/read-through	upstream	downstream	1	70	0	1211	65535	low	.	.	duplicates(132),low_entropy(19),mismappers(203),mismatches(88)	TATAATTAATT...TGCTAGGCAGGGTGA...CAGGTGcaccAtGgTGtcTGTTTGACAT...CATACTGCTGAT...ACTTCTCCTCAGGAGC...TGTTTGACATTTG...ATCTTCAGTAT...CATGGTGCACCT...GTTTGACATT...ACcTGGACAACCTCAAGggCaCCTTTGCcAcaCTGAGTGAGCTGCACT___...CAAGGCTACTATCACAAGCCTGTGGGGCAAG|GTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGCAG___GCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAGG___CTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCACTAAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTTATTTTCATTGC	in-frame	KATITSLWGK|VNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH*	.
TALL030	HBG1	HBB	-/-	-/-	11:5249368	11:5225726	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	1206	65535	low	.	.	duplicates(23),low_entropy(2),mismatches(1)	GCACCTTTGCCCAGCTGAGTGAACTGCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAAG|CTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCACTAAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGAT	in-frame	TFAQLSELHCDKLHVDPENFK|LLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH*	.
TALL030	AC104389.2	HBB	+/-	-/-	11:5249751	11:5226967	CDS	CDS	deletion/read-through/3'-3'	upstream	downstream	1	70	0	1211	65535	low	.	.	duplicates(132),low_entropy(19),mismappers(203),mismatches(88)	TATAATTAATT...TGCTAGGCAGGGTGA...CAGGTGcaccAtGgTGtcTGTTTGACAT...CATACTGCTGAT...ACTTCTCCTCAGGAGC...TGTTTGACATTTG...ATCTTCAGTAT...CATGGTGCACCT...GTTTGACATT...ACcTGGACAACCTCAAGggCaCCTTTGCcAcaCTGAGTGAGCTGCACT___...CAAGGCTACTATCACAAGCCTGTGGGGCAAG|GTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGCAG___GCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAGG___CTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCACTAAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTTATTTTCATTGC	.	.	.
TALL030	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	5	0	81	40	low	.	.	duplicates(29)	AGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGG	.	.	.
TALL030	TRIO	EEF1A1P13	+/+	-/+	5:14488432	5:14652571	exon	exon	deletion/read-through/5'-5'	downstream	upstream	0	0	5	0	194	low	.	.	duplicates(16),mismappers(1),mismatches(2)	CGGCGCTACT...|...ATCCTGGAGAGGCAaGCtCAAGGGCTTGTCAGTTGGACGAGTTGGTGGTAGGATGCAGTCCAGAGCCTCAAGCAGCgTGGTTCCACTGGCATTGCCATCCTTACGGGTGACTTTCCATCCCTTGAACCAAGGCATGTTAGCACTTGGCTCCAGCATGTTGTcACCATTCCAACCAGAAATTGGCACAAATGCTACTGTGTCGGGGTTGTAGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTCTGGCTGTAGGGTGGC	.	.	.
TALL030	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	23	38	low	.	.	duplicates(18)	CACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAG...AGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTCTGGGCCCGAGTGGGCTGAATCCCATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGAC	out-of-frame	TGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseep	.
TALL030	USP3	TMEM189	+/.	-/.	15:63582404	20:50123058	intron	3'UTR	translocation	downstream	downstream	0	0	3	25	9	low	.	.	.	.	.	.	.
TALL030	POLE	CD83	-/-	+/-	12:132635939	6:14129965	CDS	intron	translocation/5'-5'	upstream	downstream	0	0	3	84	15	low	.	.	duplicates(3)	GCCGTGTGGAAGATGCCATCGCTTACGTGGAGTACATCACCAGCAG___CATCCATTCAAAGGAGACCTTCCATTCTCTGACAATTTCTTTCTCTCGATGCTGGGAATTTCTTCTCTGGATGGATCCATCTAACT...|...AACTCAGTGTAGGGAAAGAGATAACCAAGGAGTTAGGGGAATACTCTGAGAAGCAACTCAGGAAAGAAAATACATACACATGGGCACGTGTGCACTCGTATACACACACACACACACACACACACACACACA	.	.	.
TALL030	EEF1A1P6	DNAH11	-/-	+/-	7:22511050	7:21815526	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	9592	1	low	.	.	duplicates(5),mismatches(10)	GGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTC...|...ATTGGTTTGTCACA	.	.	.
TALL030	EEF1A1P6	FAM126A	-/-	-/-	7:22511206	7:22892137	exon	intron	deletion/read-through	downstream	upstream	0	0	3	5136	0	low	.	.	duplicates(6),mismatches(4)	...CCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTG|...GAAAGTTTCTTGC	.	.	.
TALL030	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	3	0	0	247	36	low	.	.	duplicates(9)	CCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctd	.
TALL030	ZGPAT	IL3RA	+/+	+/-	20:63733299	X:1366461	CDS	intron	translocation/5'-5'	downstream	downstream	0	0	3	206	15	low	.	.	duplicates(1)	GGAGGAAGAGGGAGAGGACGAGGAAGAGCTGAGTGGGACAAAG___GTTCTCCCATGGGCAGGTGGTCTCTCTGGATGAGCTGCGCCCCTTCCAGGACCCAGACCTGAGCTCCCTGCAGGCCGGCTC...|...CGCGCcCCCGGCTCACCCCGCGCACCCCGCTCACCCCGCGCACCCCGCTCACCCCGCGCACCCCGCTCACCCC	.	.	.
TALL030	RP4-583P15.15	IL3RA	+/+	+/-	20:63733299	X:1366461	CDS	intron	translocation/5'-5'	downstream	downstream	0	0	3	206	15	low	.	.	duplicates(1)	GGAGGAAGAGGGAGAGGACGAGGAAGAGCTGAGTGGGACAAAG___GTTCTCCCATGGGCAGGTGGTCTCTCTGGATGAGCTGCGCCCCTTCCAGGACCCAGACCTGAGCTCCCTGCAGGCCGGCTC...|...CGCGCcCCCGGCTCACCCCGCGCACCCCGCTCACCCCGCGCACCCCGCTCACCCCGCGCACCCCGCTCACCCC	.	.	.
TALL030	PLBD1	SFXN2	-/-	+/+	12:14507091	10:102732481	CDS	intron	translocation	upstream	upstream	2	0	0	196	0	low	.	.	duplicates(5)	GCAGTGGATTGATATTGCTGCAGACCACAAACAGTGTGTTTAATAAAACCCTGCTAAAGCAGGTAATACCCGAGACTCTCCTGTCCTGGCAAAGAGTCCGTGTGGCCAATATGATGGCAGATAGTGGCAAG...GGCCCTCCTACAATGTTCCTTT|CTAGGGAGAGTGATAGAGAAAATAAATTCCCTGCTTTGGTTTGCTTCCAGCAGTGGGTGTATTGCAAAATTTGTTTGCACGAACGTACAAATACATTTTTGAGTTTTGAGA	out-of-frame	PSYNVPf|*	.
TALL030	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853377	18:48049935	exon	intron	deletion/read-through	downstream	upstream	0	0	2	20	0	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	...TCGTATAAcAATTACATCACAAGACGTCTTgaACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATG|...AGCTGTCCCCAC	.	.	.
TALL030	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69079883	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	0	1	1	69	11	low	.	.	duplicates(5)	GGCTGTGTACCGATTGCCACACCCAGGCTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCC	out-of-frame	AVYRLPHPGc|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL030	OSBP	LDLRAP1	-/-	+/+	11:59610407	1:25551581	CDS	intron	translocation	upstream	upstream	0	0	2	54	10	low	.	.	duplicates(4)	AGCCAACATCACCGTGGAGGACTCCTGCAACTTCATCATTTCCAATGGGGGTGCTCAGACCTACCATCTGAAAGCTAGTTCAGAAGTTGAGCGGCAGCGCTGGGTGACGGCCCTGGAACTGGCCAAGGCCAA...|...AACTTGAGAGCAGGGTCTGTGTCTGAGTTGCTCCAGGGCCCCATCACTCAACCCAGGACTGGGGACATCTCAGGGACTTTCACATTCTTTTGGAGGATCAAATGGAATAGGCTTGTGGTTGATGGGACAGAGG	.	.	.
TALL030	MTX3	MTX3	-/-	-/-	5:79983765	5:79984206	CDS	intron	duplication	upstream	downstream	0	2	0	12	9	low	.	.	duplicates(2)	CAGATGGATGACAATCTTCGCCAAAGCCCcCAG|GTCTGTGTCTGCCTTTTCTTCATAGCGTATCGGGAAGATCAAATAAGATACTGTACGTGAACATAGTTTGCAAACTGGAGCTTAGTGTAACAGTACCGCT...CATATGGTTCTGTACTCTTCTAGGCTATAGTTTGGATGGGGAGGCCACAGTCCACATAAGCGGTGCCACAGCATTAGTCAGATGTATCTTTTGTACTTTCTACAGATGGATGACAATCTTCGCCAAAGCCC	out-of-frame	qMDDNLRQSPQ|vcvclffiayredqiryct*	.
TALL030	RFX3-AS1	TCTN3	+/+	-/-	9:3529995	10:95693429	intron	CDS	translocation	downstream	downstream	0	0	2	33	80	low	.	.	duplicates(3)	GGGGCCAAGGTAATTCAAAACTGAACATAATTTGCCACTATTCTCTGGAGCACCCTCAAGCCTCCCTATCCCCACCTAAAGTATGATTTGGTTTTGAAAACAGTGCAATAATTTTTTCTGGT...|...AATTGCTGCTGCGACAGGGACTGCTATCTTCTCCATCCGAGGACAGTTTTCTCCTTCTGCCTTCCAGGCAGCGTAAG___GTCTTCAAGCTGGGTTTGTGTAGACAACTCTGTTATCTTCAGGAGTAATTCCCCGTT	.	.	.
TALL030	SLC9A3	SPRED3	-/.	+/.	5:474255	19:38392265	intron	CDS	translocation	upstream	upstream	0	0	2	71	12	low	.	.	duplicates(1)	.	.	.	.
TALL030	RP11-574K11.24	RP11-1391J7.1	-/.	-/.	10:73743946	11:859330	exon	intron	translocation	downstream	upstream	0	0	2	91	6	low	.	.	duplicates(1)	.	.	.	.
TALL030	MESDC2	BOD1L1	-/-	-/-	15:80982031	4:13582278	CDS	CDS	translocation	upstream	downstream	2	0	0	168	73	low	.	.	duplicates(2)	CCCCGGAAGAAGAAGAAGGATATTCGCGATTACAATGATGCAGACATGGCGCGTCTTCTGGAGCAATGGGAG___AAAGATGATGACATTGAAGAAGGAGATCTTCCAGAGCACAAGAGACCTTCAGCACCTGTCGACT...CTCATGATGTTTGTCACTGTATCAGG|g|AGCaAGAGCAGAACGATGATGACACCATAAAATCTCAGGAG___GAAGATCAGCCAATAATTATTAAAAGGAAAAGAGGAAGACCTCGCAAATACCCTGTAGAAAC	out-of-frame	LMMFVTVSg|sksrtmmtp*	.
TALL030	LYPLAL1	RP11-135J2.3(15705),RP11-392O17.2(29572)	+/+	./+	1:219179246	1:219241202	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	0	87	13	low	.	.	duplicates(7)	CTGGACAAGGATTAAGAATGTGGATCAAGCAGGTTTTAAATCAAGATTTAACATTCCAACACATAAAAATTATTTATCCAACAGCTCCTCCCAG|GAAAGATATCCATGATGGTGATGCCACTAAATAGAAGCATCTTGGATCTTACTATTTGGAGTAGAACCACACAAGGAGAAGCCATCCAACCTACATAAGACTATGAC___CTGCTTTGATTTAAGAAGACAA	out-of-frame	GQGLRMWIKQVLNQDLTFQHIKIIYPTAPPr|kdihdgdatk*	.
TALL030	DNAJC3	HS6ST3	+/+	+/+	13:95794496	13:96197468	3'UTR	intron	deletion	downstream	upstream	0	0	2	118	0	low	.	.	.	GGCCCTGGTGATGGGCGTTGCAAAGTTTTCACTGAGCACACAGCAATGGTATCACCTAGAGAAGTTCACGCAACTTTGTTGAATGTAGTTGACTTTTCCAAATTTATAAAGGAAGGAAGAAGGC...|...TGGTCCCTCC	.	.	.
TALL030	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	112	432	low	.	.	duplicates(9),mismatches(1)	GCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACAC...CAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAG	out-of-frame	ARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL030	PPT1	PXK	-/.	+/.	1:40073932	3:58421272	3'UTR	intron	translocation	downstream	downstream	0	0	2	96	24	low	.	.	duplicates(4)	.	.	.	.
TALL030	AES	PFKL	-/-	+/+	19:3055664	21:44326716	splice-site	splice-site	translocation	upstream	upstream	0	1	0	5193	770	low	.	.	duplicates(6)	GGCTGAGATCGTCAAAAGGCTGAACGGGATTTGTGCCCAGGTCCTGCCCTACCcCTCCCAAGAG|CACCGCATGCCACGGGAGCAGTGGTGGCTGAGCCTGCGGCTCATGCTGAAGATGCTGGCACAATACCGCATCAGTATGGCCGCCTACGTGTCAGGGGAGCTGGAGCACGTGACCCGCCGCACCCTGAGCATGGACAAGGGCTTCTGAGGCCAGCCATGCCCACGC	in-frame	AEIVKRLNGICAQVLPYpSQE|HRMPREQWWLSLRLMLKMLAQYRISMAAYVSGELEHVTRRTLSMDKGF*	.
TALL031	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	33	21	7	179	210	high	.	.	duplicates(53),low_entropy(2),mismatches(7)	GGGGTGGAgCAGCAGGAACGAGACCAGCAAGGGCAATCATACCACCTCTAAGTGCAAAGTCCAGGTCAATGAAGTGTACGGGCTGGTGGATGGGCTGGTCACCTTCTACCTCCCGCTACTGATCATGTGCATCACCTACTACCGCATCTTCAAGGTCGCCCGGGATCAGGCCAAGAGGATCAATCACATTAGCTCCTGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTCTGGGCCCGAGTGGGCTGAATCCCATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGACGGTGGGACAGACGGGGATGCGTGCACATGTGTGTGCATGGGTGCATACGTGTAGGGACGTGCATGACCTCTGAGCAAGGCAGAGGGTATTGAAGAAAGCATTGGCCTCTCACTCCCaCATGGGTTC	out-of-frame	GWsSRNETSKGNHTTSKCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL031	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	3	23	0	106	66	high	.	.	duplicates(15),low_entropy(2),mismatches(1)	ACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTT...TCTCAATTGGtTTTT	.	.	.
TALL031	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	15	1	58	91	high	.	.	duplicates(9),mismatches(2)	GGGCCGGCCGGCGTGTGCGTTGCCGCAACCCCGCGTGGGTTCCACAAAAGGCGGCCCCGAGTCTCCGGGTCACG___...AG___...CTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCG...CCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGC	.	.	.
TALL031	VANGL2	UFC1	+/+	+/+	1:160400869	1:161153926	splice-site	splice-site	deletion	downstream	upstream	2	5	1	22	132	high	.	.	duplicates(7)	CGCCGCCGGCTCCCGATCTGATTCCTGATCCTTGATTCCTTGATCCTTGGTCCCGCCATGGGAGCCTGAGCGCCCCCTATTCCCCCCTGGCCCCCAGCCCCCGGGGCCTTGAGGGGGAAGAGGCAGCGGTCTGGGACGGAGCAGGGGGTGACCAGACTCAAGAACCCCCCCCTCAACATCCCCCATCGCGCGCGCTGCCTGTCCAGGAGCGCCGAGTTCGGAGCGACCCGGAGCGCTGCGGATACAAAGGCGACGGGCCGAGCGGGGCGCCCGCGGAGCCCACCCGGCAGTTCGCAGCGGCGG|TAAAGATGACGGCGCCTTGAGGTAAGCTACAGGCAACACCACTTCCGCGTTTCTCTTGCGCCCTGGTCCAAGATGGCGGATGAAGCCACGCGACGTGTTGTGTCTGAGATCCCGGTGCTGAAGACTAACGCCGGACCCCGAGATCGTGAGTTGTGGGTGCAGCGACTG...ATATCAGTCCCTTATCCGG___TATGTGGAGAACAACAAGAATGCTGACAACGATTGGTTCCGACTGGAGTCCAACAAGGAAGGAACTCG___GTGGTTTGGAAAATGCTGGTATATCCATGACCTCCTGAAATATGAGTTTGACATCGAGTTTGAC___ATTCCTATCACATATCCTACTACTGCCCCAGAAATTGCAGTTCCTGAGCTGGATGGAAAGACAGCAAAGATGTACAG___GGGTGGCAAAATATGCCTGACGGATCATTTCAAACCTTTGTGGGCCAGGAATGTGCCCAAATTTGGACTAGCTCATCTCATGGCTCTGGGG___CTGGGTCCATGGCTG	.	.	.
TALL031	RP11-546B8.6	RP11-61O1.1	-/-	-/-	5:171307169	14:98204002	3'UTR	intron	translocation	upstream	downstream	14	8	4	54	45	medium	.	.	mismatches(2)	ACGGGGAAAGACAGGAGGTGCAGGTTGGGGATTCTTTCTCTCTTCTCCCAACAATCCAAAGGCGTCAGGATTTGCAGGGCCTCCAGGCCTGGGTCTGGAGTTAGGTCACTTGCCCGCTGTGTGACCTTGG...GTGTGGAGAGGGAGGCCCAACAGTGAGGAGTGAGAGCTGCAGGATGTCTGGGGTCTGGGCAAGTGCTCCCTCACTCCCTTCCAGCGACAAgGACCCTCAGATGGGGTAGATGCCATTGCCCTGGCTCCAGGGGGCCTCCTGCTTCTAATTCAGGCTCTGCCACTGGCAGTGTGGGTCCCTAACCGCCCCTCCCAGAACCGCATTTTCCTTATTTGTAAAACAAAAAGGGCACCAGCTACCCCCAGGGTGGCTGTGAGAACAAAATGAGATAACATCTGTGGCAGTGCCTGTGTGAAACTCTGGCGGTTATATCATAATAACTTT|TGACCTGAAAAAAGACAAAGACAACCTCATCTGATGTGTGCATAGCCCAAGGGAGAGGCAATGGGAGATATTGTAATGCAATCTCCCAGACCCCAAAAAAGATGCCGACAAACTAGAATGATGAGCTAGCTACATTGGAGTGGATTTTCCTTGTAGAGGAAATTAAATCTGAGCAGAATCCgAAAAGATACTTTTCCTGTGAAGAAAATGAAGACATTTAAGCTGTTGTAGGGATTGGAAACACCGGGGAGACCTGATTTCTGTCTTCAAAGTTGAGAAGGCCACAGATCCCCCATTTGGCATCATAAAGCACGCGCTCATGGACAAAAGAAACCAGATTCAACTGCAGAGTTACAGCCTGCAGTGGCAGTGGTAGTGACGGGC	.	.	.
TALL031	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	2	0	300	170	medium	.	.	duplicates(4),mismatches(1)	GCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGG	.	.	.
TALL031	PDK1	TMCC1	+/+	-/-	2:172556874	3:129880559	intron	splice-site	translocation	downstream	downstream	0	2	0	0	103	medium	.	.	duplicates(1)	TAAAACTGTTGGCACCAACAGCACATTTCATCATCAGCAA|GTATTAATCTCTGGAGAAGACACATCCACAGTTAGCACTTTCTTCAGATGCTGACGCTCGGTGAACAGTTGCCTTTGGTCACAAGATTTAGAAGACACAGTGTCCATCCTCCCAGATTGGATCTCTTTTTCATATGGA	.	.	.
TALL031	TRBV6-5	IFFO2(19580),RP5-1126H10.2(95844)	+/+	./-	7:142451437	1:18976266	CDS	intergenic	translocation	downstream	downstream	0	0	18	86	39	low	.	.	.	GCTGTGCAGgCTTGTCTCTCCTGTGGGCAG___GTCCAGTGAATGCTGGTGTCACTCAGACCCCAAAATTCCAGGTCCTGAAGACAGGACAGAGCATGACACTGCAGTGTGCCCAGGATATGAACCATGAATACATGTCCTGGTATCGACAAGACCCAGGCATGGGGCTGAGGCTGATTCATTACTCAGTTGGTGCTGGTATCACTGACCAAGGAGAAGTCCCCAATGGCTACAATGTCTCCAGATCAACCACAGAGGATTTCCCGCTCAGGCTGCTGTCGGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCC...|...CGCGGAGGTGGCTGTCTGCCTTCCTTTTTCTGTCTCACTTCCTCATCCTGGGATCACCTCCCCAGTTTCACCATATTGGGGGGTTTCACCATATTGGCCAGGCTGGTCTCAAACTTCTGACCTCAAACTTCTCACCCCAGTAAGCaACATATTCAGGTACACGAAGCCTTGTATCAGATCAGCTTTTGGGGGCACCCTGGCTTAGGCAGTGCTCCCAAGCACTAGTTGTGATTATGGTCCTATGGGGGCaAGATGAGTCTC	.	.	.
TALL031	HBG1	HBB	-/-	-/-	11:5249751	11:5226967	CDS	CDS	deletion/read-through	upstream	downstream	0	16	0	65	2465	low	.	.	duplicates(15),low_entropy(10),mismappers(29),mismatches(18)	ACAGAGGAGGACAAGGCTACTATCACAAGCCTGTGGGGCAAG|GTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGCAG___GCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAGG___CTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCACTAAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATC	in-frame	TEEDKATITSLWGK|VNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH*	.
TALL031	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	1	5	1	73	24	low	.	.	duplicates(3)	CCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCG	.	.	.
TALL031	OR10P1	RP11-110A12.2	+/-	-/-	12:55637394	12:55585471	CDS	exon	deletion/read-through/3'-3'	upstream	downstream	4	0	2	51	34	low	.	.	duplicates(6),mismatches(2)	CTTGCGGCGGCTCTGGGTGGAGGCCATTGCTAGGATGGCACCCAGGATGCGGATGTAAGAGGTGACAATCAGAGAGAAGGGGATCATAATGAAGACTATGGTGGCTGTCATCACGGAGATCTCGCTCCTGTGCTTCCCAGCACTTGCCAGCCTCAGTACTGGCAGGATGTCACAGAGAAAGTGCGGGATGATCGGGTGGCTGCGAAAAG|CCCACACCACATATTGAGAAAACTAGAAGAGAATGAACTTGGCCAGAGGAGAATGAA___ATGGCTTGATATAGATGAAGATGCAGCTGCCATAAGTGATGGAAACCACAGTAATATGTGAAGAACAG___GGATTCTGTGCTGCGGAGATCATTACGGAAGCAACAGTAGCAGG	.	.	.
TALL031	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	3	0	35	29	low	.	.	duplicates(5),low_entropy(3),mismatches(1)	GGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGC	.	.	.
TALL031	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	185	6	low	.	.	duplicates(3)	GAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGaTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGC	out-of-frame	EPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|eiksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvs	.
TALL031	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510584	7:22317791	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	3	4319	1	low	.	.	mismatches(10)	ATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTcATACCTGCCACCCCAC...|...TTCAAGATGTTCAC	.	.	.
TALL031	EEF1A1P13	TRIO	-/-	+/-	5:14652720	5:14427483	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	581	2	low	.	.	mismappers(1),mismatches(5)	CTGGTGTTGGTGAATTTGAAGCTGGTATCTCcAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACgACTAATTGTcGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAACATGCTGG...|...GGCGTATCCCCCG	.	.	.
TALL031	VIPR2	VIPR2	-/-	-/-	7:159034611	7:159035944	CDS	intron	duplication	upstream	downstream	0	2	0	8	6	low	.	.	duplicates(1)	CTGGGATACAAACGACCACAGTGTGCCCTGagGGGTC|CATGACCAGACTGCAACCTCGAAAACGGGCCCGGCAACATCTGGCAACATGAAGTCCTTTGGAAGCCAGAAGGTTACCTGGTTGGAAGGACAGGGAGCGTTTGCGGCCAACCGACAGCCACGCAGGAAGCATCTGGGCGATTCATGGGGAGAAATCCTGTGAGGTTGGAGTGTTGGAGGAAGCCCCGTGCAGGAGACAGGAA___TTGCTGGGATACAAA	out-of-frame	WDTNDHSVP*gV|hdqtatsktgpatsgnmksfgsqkvtwlegqgafaanrqprrkhlgdswgeil*	.
TALL031	RPS20P14(13936),RP11-42D20.1(7793)	ST6GAL1	./+	+/+	3:186914493	3:186963785	intergenic	splice-site	deletion/read-through	downstream	upstream	0	2	0	6	87	low	.	.	duplicates(3),mismappers(1)	TGAAGTTTCACTATGTTGGCCAGGCTGGTCTCAAACTCCTGTCCTCAGGTAATCCACCTGCCTCGGCTTCGCAGAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTAGCCCTCCATATTTTCTCATGAGGATTCAGAAGTGATTCAAATGACTCCTCCACTATGTGAG|GCAAGGGGAGAGCCAGTTGCGCAGAGCCCTGCAACCAGCAGTCCAGGGAGAAGTGGTGAATGTCATGGAGCCCAGCTGAAATGGACTGGCCCCCTTGAGCCTGTCCCAAGCCCTGGTGCCAGGTGTCCATCCCCGTGCTGAG___ATGAGTTTTGATCATCCTGAGAAAAATGGGCCTTGGCCTGCAGACCCAATAAACCTTCCCTCCCATGGATAATAGTGCTAATTCCTGAGGACCTGAAGGGCCTGCCGCCCCTGG	.	.	.
TALL031	EEF1A1P6	DNAH11	-/-	+/-	7:22510797	7:21780146	exon	intron	deletion/5'-5'	upstream	downstream	0	0	2	4953	1	low	.	.	duplicates(4),low_entropy(2),mismappers(1),mismatches(14)	GCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTG...|...ATTTTAATGCCAT	.	.	.
TALL031	C16orf70	CAPS2	+/+	-/+	16:67147132	12:75335103	3'UTR	intron	translocation/5'-5'	downstream	upstream	0	0	2	158	20	low	.	.	duplicates(2)	ATTTGGTTCCACATTCTGCTTTGGTCTTCAGCGAATGATCTTTGAG___GTCATGCAGAACAACCACATTGCCTCGGTGACCCTGTATGGCCCCCCCAGGCCTGGTAGCCACCTGAGAACAGCGGAACTCCCCTAGG...|...CCTTGCCTCTTGCGGGGAAGGTGGGGATGCTGGAGCAGTGTTTGGAAGTTGCTTTGTTGCACCACTAAAGTTATAAGTACTGAACACAGGATTATTTTGTTTTCTTTCTTCCATTTTTTAGCTAGCAATTTCC	.	.	.
TALL031	OGFOD3	BICD1	-/-	+/+	17:82398309	12:32346843	CDS	intron	translocation	upstream	upstream	0	0	2	4	5	low	.	.	duplicates(1)	CTGAGGCTTTTGGCATCAGCGCATCCTCGCTGCATCTGACCAAGCCCACCTTCTTCTCCCGCATAAACAGCACGGAAGCGCGGACGGCGCACGACGAGTACTGGCATGCGCACGTGGACAAG___GTGACCTACGG...|...GTTTTAACTAGATAGAATTTCCAaACAGAAATCTAAATTTGAATAACTAATGACTGATTTTAAAATAAAATTTAAGATGGCATGTATTTCGGTTTTATTTCTTTTCTTTTCTTTTTTTTTTTTTTTAAGAC	.	.	.
TALL031	C16orf70	GLIPR1L1	+/+	+/+	16:67147132	12:75335103	3'UTR	intron	translocation	downstream	upstream	0	0	2	158	20	low	.	.	duplicates(2)	ATTTGGTTCCACATTCTGCTTTGGTCTTCAGCGAATGATCTTTGAG___GTCATGCAGAACAACCACATTGCCTCGGTGACCCTGTATGGCCCCCCCAGGCCTGGTAGCCACCTGAGAACAGCGGAACTCCCCTAGG...|...CCTTGCCTCTTGCGGGGAAGGTGGGGATGCTGGAGCAGTGTTTGGAAGTTGCTTTGTTGCACCACTAAAGTTATAAGTACTGAACACAGGATTATTTTGTTTTCTTTCTTCCATTTTTTAGCTAGCAATTTCC	.	.	.
TALL031	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	70	164	low	.	.	duplicates(2)	CTGGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGC...TGGAAATCCTTAATTTCATCTACAAAAACTGTTTTCCCAAATAGGTCACATTCACGCATATCAGATGGACAGATGTATCATTTTGGGGTCCACCATTCAACCCACTACAAGGAGTTTTTTAAACAAAA	.	.	.
TALL031	NUP214	ABL1	+/+	+/+	9:131222930	9:130854064	splice-site	splice-site	duplication	downstream	upstream	0	1	1	228	107	low	.	.	.	CAGTGGGGGCTTTGGATCCACAGCTACCTCAA___ATACCTCTAACCTATTTGGAAACAGTGGGGCCAAGACATTTGGTGGATTTGCCAGCTCGTCGTTTGGAGAGCAGAAACCCACTGGCACTTTCAGCTCTGGAGGAGGAAGTGTGGCATCCCAAGGCTTTGGGTTTTCCTCTCCAAACAAAACAG|AAGCCCTTCAGCGGCCAGTAGCATCTGACTTTGAGCCTCAGGGTCTGAGTGAAGCCGCTCGTTGGAACTCCAAGGAAAACCTTCTCGCTGGACCCAGTGAAAATGACCCCAACCTTTTCGTTGCACTGTATGATTTTGTGGCCAGTGGAGATAACACTCTAAGCATAACTAAAG___GTGAAAAGCTCCGGGTCTTAGGCTATAATCACAATGGGG	in-frame	SGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKT|eALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNG	.
TALL031	RIC8B	ARIH2	+/+	+/+	12:106874566	3:48983199	splice-site	splice-site	translocation	downstream	upstream	1	0	0	8	362	low	.	.	.	TGAATGGACACTAGACACTTCCTTTTTTCCATCCATAGGAGAGCAGATGTGAAGGACCTGCACCAGGATGGTGGTTAGCAACAGTGGCCCGTGCCAAAGCACTTACCAAAGTGATGATGACTAA|GACTTGGAGAACCAGATGCATATAGCGGAGCAGCGGAGGAGAACCCTGCTGAAAGATTTCCATGACACCTAAGTTGGGATGTGGATGTGCCGG	out-of-frame	*mdtrhflfsihRRADVKDLHQDGG*qqwpvpkhlpk***l|rlgepdaysgaaeenpaerfp*	.
TALL031	PPP6R3	LMO2	+/+	-/-	11:68460827	11:33881887	splice-site	splice-site	inversion	downstream	downstream	0	1	0	56	82	low	.	.	duplicates(2)	GCGCTTCGCTGATGGTGTCGGTGAGCGCGTTTCCCGCCTGAGCGCAACTAGCGGCGGGTCGTGGGCACCTCCAG|TAACAACTGCTCTGAAAAGAAGATATTTTTCAACCTGAACTTGCAGTAGCTAGTGGAGAGGCAGGTAAG___GATACCTCCCTCAACAATGGGCATTCCTAGGGAGCATCATTAACAAGATTCCAG	.	.	.
TALL031	PPP6R3	LMO2	+/+	-/-	11:68460827	11:33869987	splice-site	splice-site	inversion	downstream	downstream	0	1	0	56	113	low	.	.	.	CGCCATTTTGGGCGCTTCGCTGATGGTGTCGGTGAGCGCGTTTCCCGCCTGAGCGCAACTAGCGGCGGGTCGTGGGCACCTCCAG|GAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCCCGAGAGAGGAGGAAGCCCGGAGAGAGACGCACGGTCCCCTCCCCGCCCCTAGGCCGCCGCCCCCTCTCTGCCCTCGGCGGCGAGCAGCGCGCCG	.	.	.
TALL031	BAZ1A	C14orf142	-/-	-/-	14:34794751	14:93203784	splice-site	splice-site	duplication	upstream	downstream	1	0	0	189	136	low	.	.	duplicates(2)	AAG___GAAAGAGAGAAGTTACGTGAAGAAAAGCGAAAGTATGTGGAATACTTAAAACAGTGGAGTAAACCTAGAGAAGATATGGAATGTGATGACCTTAAG___GAACTTCCAGAACCAACACCAGTGAAAACTAGAC...GGGGAACTTTTTGATCTTCAAGATGAGTTTCCTGATGGAGTAACCCT|AGGTGATGATGAAGATGATGCAGAAGATGAAAATAACATTGATAACAGAACTAACTTCGATGGACCATCTGCAAA-CGGCCAAAAAC	in-frame	GELFDLQDEFPDGVTl|GDDEDDAEDENNIDNRTNFDGPSAngqk	.
TALL032	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	16	67	15	211	386	high	.	.	duplicates(41),low_entropy(7),mismatches(12)	CCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GCCTGGGCGCTGG...___...GGGGGGGG...___...AAGACTGAT...___...TTTTTTTTT...___...TTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACC	.	.	.
TALL032	RUNX1	CLIC6	-/-	+/-	21:35048842	21:34704668	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	38	8	4	394	97	high	.	.	duplicates(32),low_entropy(4),mismappers(6),mismatches(5)	GCTGTGGAAAGGGGAACAGTTAAATTTGTAATTTGGGTTGTGTGAAAACTTCTTTGGGCCTCATAAACAACCACAGAACCACAAGTTGGGTAGCCTGGCAGTGTCAGAAGTCTGAACCCAGCATAGTGGTCAGCAGGCAGGACGAATCACACTGAATGCAAACCACAGGGTTTCGCAGCGTG___GTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAG|GCTCCTTCTCGGATCTGCCACTGGAATGGAACATCTGGCCAGAAACAGGATGGGACAATATCTGTTCGGCCACAGCTTAAGACACGGAAGAAAGTTGCAATTATACATTTCCCCCTTTGTGGCCTTAAAACCAAACTGTGTCCCGACCCAGCATGGCTAGTGAACCAAAGGCTGTTAGGCATTTAGAATTAGCCAGCAGCAGTGACTGCC	out-of-frame	MASDSIFESFPSYPQCFMR|gsfsdlplewniwpetgwdnicsata*	.
TALL032	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	20	3	100	85	high	.	.	duplicates(9),low_entropy(7),mismatches(3)	AGGGGGAGCGCAGAGGCGACGGCCCCCATGCCGGCGGCCAACATGATGGAGAACCGGCCGCTGCCCGCCCTGCAGGTGCCCGAGCCGCAGGGTGCGCCCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTAC...CCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCC	.	.	.
TALL032	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	12	6	6	62	102	high	.	.	duplicates(7),mismappers(1),mismatches(1)	GGGCTGGTGGATGGGCTGGTCACCTTCTACCTCCCGCTACTGATCATGTGCATCACCTACTACCGCATCTTCAAGGTCGCCCGGGATCAGGCCAAGAGGATCcATCACATTAGCTCCTGGcAGGCAGCCACC...GGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACC	out-of-frame	AFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL032	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	11	0	83	90	high	.	.	duplicates(13),mismappers(3),mismatches(1)	CCCCAGGGTTGAGAAAGAAGCTGAAGTTAACGGTTGATATCCTATGTCTTTCCTCAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACAC	.	.	.
TALL032	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	11	1	139	18	high	.	.	duplicates(1),low_entropy(1)	CCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCC...GCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTT	.	.	.
TALL032	SUZ12	ZNF207	+/+	+/+	17:31937520	17:32351739	splice-site	splice-site	deletion	downstream	upstream	0	3	2	218	20	high	.	.	duplicates(2),mismatches(2)	GCGGCAAATCCGG...GCGGcGTTACCGGTGAAGAAGtCGAAAATGGAGCACGTCCAGGCTGACCACGAGCTTTTCCTCCAGGCCTTTGAGA|GCAGTGTCATCATTAGGCTGTCTTTGTGCCTTAACAGTATTGATCAGGTATTGTAATAGAGATTTTGATGATGAGAAGATCCTTATTCAGCACCAAAAAGCAAAGCATTTTAAATGCCATATATGTCACAAGAAATTGTATACAGGACCTGGCTTAGCTATTCATTGCATGCAG___GTACATAAAGAAACAATAGATGCCGTACCAAATGCAATACCTGGAAGAACAGACATAGAGTTGGAAATATATGGTATGGAAGGTATTCCAGAAAAAGACATGGATGAAAGACGAC	out-of-frame	AaLPVKKsKMEHVQADHELFLQAFE|ssviirlslclnsidqvl*	.
TALL032	SUZ12	ZNF207	+/+	+/+	17:31937520	17:32358503	splice-site	splice-site	deletion	downstream	upstream	0	4	1	218	1485	medium	.	.	duplicates(1),mismatches(2)	GCGGCAAATCCGG...GCGG?GTTACCGGTGAAGAAGtCGAAAATGGAGCACGTCCAGGCTGACCACGAGCTTTTCCTCCAGGCCTTTGAGA|GTACATAAAGAAACAATAGATGCCGTACCAAATGCAATACCTGGAAGAACAGACATAGAGTTGGAAATATATGGTATGGAAGGTATTCCAGAAAAAGACATGGATGAAAGACGACGACTTCTTGAACAGAAAACACAAG___AAAGTCAAAAAAAGAAGCAACAAGATGATTCTGATGAATATGATGATGACGACTCTGCAGCCTCAACTTCATTTCAGCCACAGC	out-of-frame	A?LPVKKsKMEHVQADHELFLQAFE|st*	.
TALL032	SUZ12	RP11-227G15.3	+/+	+/+	17:31937520	17:32351739	splice-site	splice-site	deletion	downstream	upstream	0	3	2	218	20	high	.	.	duplicates(2),mismatches(1)	GCGGcGTTACCGGTGAAGAAGtCGAAAATGGAGCACGTCCAGGCTGACCACGAGCTTTTCCTCCAGGCCTTTGAGA|GCAGTGTCATCATTAGGCTGTCTTTGTGCCTTAACAGTATTGATCAGGTATTGTAATAGAGATTTTGATGATGAGAAGATCCTTATTCAGCACCAAAAAGCAAAGCATTTTAAATGCCATATATGTCACAAGAAATTGTATACAGGACCTGGCTTAGCTATTCATTGCATGCAG___GTACATAAAGAAACAATAGATGCCGTACCAAATGCAATACCTGGAAGAACAGACATAGAGTTGGAAATATATGGTATGGAAGGTATTCCAGAAAAAGACATGGATGAAAGACGAC	out-of-frame	AaLPVKKsKMEHVQADHELFLQAFE|ssviirlslclnsidqvl*	.
TALL032	SUZ12	RP11-227G15.3	+/+	+/+	17:31937520	17:32350277	splice-site	splice-site	deletion	downstream	upstream	0	6	2	218	1633	medium	.	.	duplicates(4),mismatches(1)	GCGGcGTTACCGGTGAAGAAGtCGAAAATGGAGCACGTCCAGGCTGACCACGAGCTTTTCCTCCAGGCCTTTGAGA|AACACAGTTATGGGTCGCAAGAAGAAGAAGCAGCTGAAGCCGTGGTGCTG___GTATTGTAATAGAGATTTTGATGATGAGAAGATCCTTATTCAGCACCAAAAAGCAAAGCATTTTAAATGCCATATATGTCACAAGAAATTGTATACAGGACCTGGCTTAGCTATTCATTGCATGCAG___GTACATAAAGAAACAATAGATGCCGTACCAAATGCAATACCTGGAAGAACAGACATAGAGTTGGAAATATATGGTATGGAAGGTATTCCAGAAAAAGACATGGATG...CAGGACTGCCACCAGTACCAGGAGCACCAGGAATGCCTCCAG___GCATACCTCCATTAATGCCAGGTGTTCCTCCTCTGATGCCAGGAATGCCACCAGTTATGCC	out-of-frame	AaLPVKKsKMEHVQADHELFLQAFE|khsygsqeeeaaeavvlvl*	.
TALL032	SUZ12	RP11-227G15.3	+/+	+/+	17:31937520	17:32358503	splice-site	splice-site	deletion	downstream	upstream	0	4	1	218	1485	medium	.	.	duplicates(1),mismatches(1)	GCGG?GTTACCGGTGAAGAAGtCGAAAATGGAGCACGTCCAGGCTGACCACGAGCTTTTCCTCCAGGCCTTTGAGA|GTACATAAAGAAACAATAGATGCCGTACCAAATGCAATACCTGGAAGAACAGACATAGAGTTGGAAATATATGGTATGGAAGGTATTCCAGAAAAAGACATGGATGAAAGACGACGACTTCTTGAACAGAAAACACAAG___AAAGTCAAAAAAAGAAGCAACAAGATGATTCTGATGAATATGATGATGACGACTCTGCAGCCTCAACTTCATTTCAGCCACAGC	out-of-frame	A?LPVKKsKMEHVQADHELFLQAFE|st*	.
TALL032	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	14	31	5	140	103	medium	.	.	duplicates(16),mismatches(4)	GCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCC	.	.	.
TALL032	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	8	3	3	35	31	medium	.	.	duplicates(5),low_entropy(2),mismappers(2)	GCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGT?GGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTG?TTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAACAtGGGAC	.	.	.
TALL032	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	5	1	29	386	medium	.	.	duplicates(5),inconsistently_clipped(1),low_entropy(1),mismatches(2)	CACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCC	.	.	.
TALL032	RUNX1	RCAN1(43181),CLIC6(11066)	-/-	./-	21:35048842	21:34658323	splice-site	intergenic	deletion/read-through	upstream	downstream	4	2	1	394	7	medium	.	.	mismappers(1),mismatches(1)	GGCCTCATAAACAACCACAGAACCACAAGTTGGGTAGCCTGGCAGTGTCAGAAGTCTGAACCCAGCATAGTGGTCAGCAGGCAGGACGAATCACACTGAATGCAAACCACAGGGTTTCGCAGCGTG___GTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAG|ATCCCTGAAATTTATGGTGAAGGATGTTGACCTGATGAAACAGATCTGTGGTCATGGGTTTGAGAAGTGGCTTTCAACAAGGGGTGATTTTGCCCTCCATtGATCATCTGtCAATtTCTGGGCACATGTTTTAGTTTCCATGATTGGAGGATGCTACTGGCGTCTGGTAGGTAGAGGCCAG___GAAACACTAGGGGGAAAAAAACAGATAAATAAGGCT	out-of-frame	MASDSIFESFPSYPQCFMR|dp*	.
TALL032	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	2	0	567	38	medium	.	.	duplicates(4),mismappers(1),mismatches(2)	GGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACC	.	.	.
TALL032	RP11-680G10.1(40371),AC092377.1(41603)	GSE1	./+	+/+	16:85399820	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	2	0	37	386	medium	.	.	duplicates(3)	GCGTGGGGGATGCCGCAGACgGTGAAACGGGCAAGGATACCTACACTTGGCGGGGTGCACATTCTGCTGAGTTtGGGGGAAGAATGGATTAGGAATCTGTGCTTCGCTCCTAGAAGAGCCCCTGGCAGGTG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCC...CGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCC	.	.	.
TALL032	AC012487.2	RGPD4	-/-	+/-	2:108511930	2:107888941	splice-site	intron	deletion/5'-5'	upstream	downstream	1	1	0	15	43	medium	.	.	duplicates(2),mismatches(1)	GGGGCCCGGCTCTCCTTGCCTCGAGGCTCCTCTGATTCCACTCGCGTGGCTGCGCGGCCCTGGCAGCGGCCTTCGTCCCGGGGGTGGGAGCTACACAGGGTTCCGCCCCGTCCTGGCGAGGACGCCTGAGGGG...GCTCCGAGCAGTCAAGAAGAACATGCCCCAAGTTATTCGTCAGTGAGGCGGAAATTGTGGTGTACTTGT|TTTCTGTGGGTCAGGAGATCAGAAATGGTTCTATTTCAAGGTCTCTCACAGGGCTGCAATCAAGATGTTGGCATGGCaGGG	.	.	.
TALL032	HBG1	HBB	-/-	-/-	11:5249751	11:5226967	CDS	CDS	deletion/read-through	upstream	downstream	0	74	0	805	55119	low	.	.	duplicates(89),inconsistently_clipped(1),low_entropy(27),mismappers(226),mismatches(74)	ACATGCACCATGGC...TGGAGGAAGAATTtCagaACAtTTcCC...AGAAGGAAACC...AGGAGGACAAGGCTACTATCACAAGCCTGTGGGGCAAG|GTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGCAG___GCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGG...___...GGCAAGAAAGTGCTCGG...___...TTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAGG___CTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCACTAAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTTATTTTCATTGC	in-frame	EDKATITSLWGK|VNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK	.
TALL032	HBG1	HBB	-/-	-/-	11:5249368	11:5225726	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	1162	65535	low	.	.	duplicates(4),low_entropy(7),mismatches(1)	AAG___GCTCCTGGTTGTCTACCCATGGACCCAGAGGTTCTTTGACAGCTTTGGCAACCTGTCCTCTGCCTCTGCCATCATGGGCAACCCCAAAGTCAAGGCACATGGCAAGAAGGTGCTGACTTCCTTGGGAGATGCCACAAAGCACCTGGATGATCTCAAGGGCACCTTTGCCCAGCTGAGTGAACTGCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAAG|CTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCACTAAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAAC	in-frame	RLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFK|LLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH*	.
TALL032	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511869	7:23337781	exon	intron	deletion	downstream	upstream	0	0	8	389	0	low	.	.	duplicates(2),low_entropy(2),mismatches(24)	.	.	.	.
TALL032	DDTL	AP000350.6(2383),AP000350.7(8041)	+/+	./-	22:23972217	22:23931957	3'UTR	intergenic	inversion	downstream	downstream	0	8	0	53	68	low	.	.	duplicates(4)	TGGAGATTATCTACCTCATGGGGATAGCATGTCTTGTCTGAGCAAAGGGAGAG|TGCACCAAACTTTGGGTAACAAACAgTTTAAACTTGTTTTTTTAGACATTCAGTAAGCCCTTTCTCCCCCCTCCCCAAACCGTTTGATTACAAAGAAGCACAATGGGTTAACTGTGGCAAAACATAAGAAATAAGGCAGGGGAGGCAGGTGCAGCCTTGACAACATAAGAATATCCAAACAATGTTGTCAATATCAAAAGAAAAAATCAAAACATCTTTTATAATATAAAATAAATCCATAT	.	.	.
TALL032	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	2	0	4	98	21	low	.	.	duplicates(5),mismatches(1)	GATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAA	out-of-frame	DGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|wlyassssscs*	.
TALL032	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	305	394	low	.	.	duplicates(2),mismatches(1)	GTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAG	in-frame	VWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQG	.
TALL032	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87036400	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	2	2	82	14	low	.	.	duplicates(3)	CAACCAGTGCAGTCCTTATGGAGCAAATTAAG___CTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGA...GAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTTTCTATCAACACCACGAGAGAAACACACCCTCCAGCCTGGGTCCCAGAATGAGGCAG___CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTGGACATTGTGAGGA...GCAGGAATGCGAATGCTAAGAAGCCGAGTAATAGACATATCCATGGTGCCTAGTTTTGCAGCAGAAACACCAAGTAGCAGTCCAATGCTTGTCATTTCATGGCCCTAAGATAGAAACAAAACAAATACATAG	out-of-frame	ESLLPVINTMLQLSPEEKGKLAAVAQ|gfyqhherntpsslgprmrqptgllqyvcelsldiqgqcqplqplghce	.
TALL032	GAS2	RP11-17A1.3	+/+	+/+	11:22775348	11:22834907	intron	splice-site	deletion/read-through	downstream	upstream	1	4	0	487	36	low	.	.	duplicates(6),low_entropy(10),mismappers(1),mismatches(3)	GGCTGTAGTGCAGATAATGAATTGAAAAGGTATAAAGTTGGAGGACGAGCATTCCACCGTTTTGGCTTGGAGAGTGTGGAGGTCAAGAGGGTGGCAGCTCATTCTGGGGACCTACCTCTTGAAATTCCAG|AGTTCCACTCTTTTTGTCGACAATAATATGGCGCCCAAACACGTGGGGCCTCAGAGAAGACTCTGGATCCGGAAGGAGTATCCCAAAACCAGAGCTAAGGTACCAGCTGGAGCCCACTGAAGCCTCACCGAGTTTGGGCTTCTCCTCCTGTGGAACTG___GAAACCAAAATCATGGTATTTTGAAAACCAGAGGTATGAATCTCCCTCGTTTGGCATCCCACTGGGCCTGGACCTGTTTCACTGCTAATGTTCTGCTGCCAAAACTATACAAGCTGCCTGGACTATTGCAGAAGAG___AGACAGAGTCTTGCTCTGTTGCCCAGAATGGAATGCAGTAGCACAATCCTAACTAATCGTAACCTTGAACTCCTGGGTTCAAGCGATCCTCC	.	.	.
TALL032	GAS2	RP11-17A1.3	+/+	+/+	11:22755953	11:22834907	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	297	36	low	.	.	duplicates(2),low_entropy(10),mismatches(3)	GGATGATGCA___GTGAAACGAATTTCTGAAGATCCTCCTTGCAAATGCCCAAACAAGTTCTGTGTGGAGCGGCTCTCCCAAGGAAGATACCGAGTGGGAGAAAAGATCCTCTTCATTAGG|AGTTCCACTCTTTTTGTCGACAATAATATGGCGCCCAAACACGTGGGGCCTCAGAGAAGACTCTGGATCCGGAAGGAGTATCCCAAAACCAGAGCTAAGGTACCAGCTGGAGCC...GCCAAAACTATACAAGCTGCCTGGACTATTGCAGAAGAG___AGACAGAGTCTTGCTCTGTTGCCCAGAATGGAATGCAGTAGCACAATCCTAACTAATCGTAACCTTGAACTCCTGGGTTCAAGCGATCCcCC	out-of-frame	DDAVKRISEDPPCKCPNKFCVERLSQGRYRVGEKILFIR|sstlfvdnnmapkhvgpqrrlwirkeypktrakvpag	.
TALL032	IPPKP1(10925),FAS-AS1(10975)	SAP18	./+	+/+	13:21115296	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	3	1	1	73	2425	low	.	.	duplicates(3)	GGTGgTGATGCCCACGCGCAGCTCCAAGACCCCGGGGAGCCTCCGCCAGGCCGGAACCTGCGCCAGGCTTCTCTGGAACCTTCTCTCCAGGACGCTCTTCTGCGGTTACTGAAAAAGGGAGTCTACATGAATTAATAAGTGAAG___GCAACAAGAAATCAACATTCTGTTAGCCAGGAAGAAGGCCCTCACCAAGAACTCCAGCCATGCTGACATCCTGATCTCTGACTTTCAGGTTCCAGACCT|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTTGCAGATCTACACTTG___GATGGATGCAACCTTGAAAGAACTGACAAGC	.	.	.
TALL032	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	45	16	low	.	.	duplicates(1)	ATCTGGCAGTATGTACCATAGTAGTGAGCAAAATCAGTATGATCTCATGGAACTTATCATCAAAGGAAAG___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAG	.	.	.
TALL032	DNM1P46	LYSMD4	-/-	-/-	15:99804839	15:99729731	exon	splice-site	deletion/read-through	upstream	downstream	1	1	1	66	39	low	.	.	duplicates(3),mismatches(2)	GAAGGGGAGCCGCTGTCATGGCTGCGACCACCCGGCGGGACCGCCCGGCCGAGCGCTCGCGGCTTCGCCTCTCCCCGCCGCCTCAACCTTCGTGGGAGCGCGGATGGAAAATG...GTGCCGAGAGCTAACTGTGTCAAGAAGAGCATGCTTCAGTTGGCTGGAGTGAGCAATTCAACTTGTGGAGGAGTGAGAAAT|GTTGCAGATATCAAGAAAGTCAACAACTTCATCAGAGAACAAGACTTATATGCTTTGAAATCTGTTAAGATTCCAGTGAGAAACCATGGGATCCTGATGGAGACCCACAAAGAACTGAAACCCCTTCTGAGCCCGTCTTCCGAGACCACAGTGACCGTGGAACTGCCAGAGGCAGACAGAGCAGGCGCGGGCACCGGTGCCCAGGCCGGCCAACTGATGGGCTTCTTTAAGGGGATTGACCAGGATATTGAGCGTG	.	.	.
TALL032	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	0	0	164	32	low	.	.	duplicates(5),low_entropy(4),mismappers(5),mismatches(1)	GGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGgGC	out-of-frame	AVGFTREEWQFLDQSQKVLYKEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL032	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	2	1	69	4	low	.	.	duplicates(2),low_entropy(1),mismappers(1)	GGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCC...GAGACTATATACGGATGTGAACACCAGAAGATGAAGACCATTGGAAGTCATCTTGAAGGTTGGCTACAACCACATTATTCTTTAGAACTTAGGTGTTATGCCTCTAGGAAGCCTTCCTTTAAATTATCTCC	out-of-frame	GPLDMRMDGGRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL032	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	164	599	low	.	.	.	GCGGTAAAGAACACACCCCGGAGATGTGGACACGGCCGCCCCAGGAGGGTCCTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCT...CGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTG	out-of-frame	r*rthpgdvdtaapggslfgGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL032	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	21	599	low	.	.	read_through(6)	TTCtGTCGGCAGAGAGAGAGCTCGCGGGTGGTTCCGGTCCGGCTTTTCAGGCCGGACGGGTGCCTGCCCCTCAGGTGCGAGTTTGTGCGGTAAAGAACACACCCCGGAGATGTGGACACGGCCGCCCCAGGAGGGTCCTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAG	out-of-frame	fcrqressrvvpvrlfrpdgclplrcefvr*rthpgdvdtaapggslfgGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL032	PARP11	CRACR2A	-/-	-/-	12:3793495	12:3756708	intron	intron	deletion/read-through	upstream	downstream	1	0	2	21	28	low	.	.	.	ATCTTGCTTTTCCTGGTACTGAAGGCTTTCTGCTTCCTGTGTTCCTTCTACTTTTCCATAATTGTAATCTCAGAACATTCACATGACACCAAATGTTAGGTGTAGTTCAATGC|CTCTTCCAGTCTCCTGCTTGGTTCTTCTGTTCCTCTCTCACACTCT	.	.	.
TALL032	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	intron	deletion/read-through	downstream	upstream	0	2	1	7	7	low	.	.	.	GGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAG	out-of-frame	GVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsq	.
TALL032	ARAP2	RNU6-573P(442100),ARAP2(10118)	-/-	./-	4:35985230	4:35938103	splice-site	intergenic	deletion/read-through	upstream	downstream	0	3	0	80	3	low	.	.	mismatches(1)	CTgCCACCTCAGCCTTCCTAGTAGCTGGGACCACAGGTGTATGCCACCACACCCAG|TGTCTGGTTGTGAACCATGAAATTGATTTTACAATCTGCAGTCTGAAATACACTGAACTAACATGTATCGAACATCTGTTATGTATCAATCTGTTGGATAGGCATTGCATACATGCCACCTCACTGAATTTTGCCCGGATTTGG	.	.	.
TALL032	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510729	7:22308974	exon	intron	deletion/read-through	upstream	downstream	0	0	3	759	0	low	.	.	low_entropy(3),mismappers(1),mismatches(13)	GCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTT...|...TCTGCCCCCAA	.	.	.
TALL032	RAP1B	NUP93	+/+	+/+	12:68657893	16:56839554	intron	CDS	translocation	downstream	upstream	3	0	0	144	235	low	.	.	.	ACACACACACACACACACACACACACACACACACgCACACGTGCGCGCGTGCGCGTGAGCCACCGCTCCCAGCCAACCGTCCCTAATTTAAAACACACACACACACACACACCCCTGACATGTTCATCATGT...CAGTCACACACACACACACACCCCTG|CAGGAAAGTGTGGAAGAGAGAGTGGCTGCCTTCAGAAATTTCAGTGATGAA___ATCAGGCACAACCTCTCAGAAGTGCTTCTTGCCACCATGAACATCTTGTTCACAC	.	.	.
TALL032	SLC30A8	SNORA31(127295),MED30(79757)	+/+	./+	8:117173477	8:117440956	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	0	2	8	8	low	.	.	duplicates(2)	CACCTTCAAACATGCTGCTATGCAGTTT___CAGAGTGCTTAAACACTGGCACCAGCCAAAGAATGTGGTTGTAGAGACCCAGAAGTCTTCAAGAACAGCCGACAAAAACATTCGAGTTGACCCCACCAAGTTGTTGCCACAGATAATT...|...TTACTCTTTTGTAGGTCAGAAGTCCAACTTGACTCTCACTGGGATAAAGTCTAAGGATTGGCTGGCTGCATTATTTTCTAGAGGTGCCTGTGTGGAATCTCTGCCCCAGCTTCTGCAGGCTGCCCGCAATCCAGGGCTCATAGCCCCATTCTTCCATCTTCAAAGCCAGCAGTGGTAGACTGAGTTCTCTTCGTATCACTCTGACCTCTCCC	.	.	.
TALL032	DLEU1	RNASEH2B	+/+	+/+	13:50660179	13:50924918	intron	intron	deletion/read-through	downstream	upstream	0	0	2	1	1	low	.	.	duplicates(1),mismappers(2),mismatches(5)	GTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTaCTGGGAcTACAGGCaTGAGCCACCGCGCCCGGCC...|...TGAGTTCATTGAGCTTCTTGGATTTGTAGTTTTCATCAAATTTGGAACATTTCAGACTTACTTTCTTCAAGTTTTTTTTTTGTTCCCTCTTCTCCTTTTGGAAACTCCAGTTATACATATATTAAAATGCA	.	.	.
TALL032	DPP6	INSIG1	+/.	+/.	7:154772611	7:155300188	intron	intron	deletion	downstream	upstream	0	0	2	0	10	low	.	.	duplicates(4),mismappers(1),mismatches(2)	.	.	.	.
TALL032	GDPGP1	TTLL13P	+/+	+/+	15:90238548	15:90262006	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	24	11	low	.	.	.	CGCGAGGTGCATCCGCTTCGGCTGCA___GCTATTTACTGAGGACCCACTGGATGTCAAGCATTGTGCATAGTTTTCTTCGATTGTTGCAACATCCCTTGCGAG___TTTCTGGAGCAGCAGAGCTGAAGGAACCCAA...AGTGACTCTACTAAG|GAAAGAAAAAACTGAGTCATCCCATGTGGCAATGCTGGACCAGGAACGATATGAGGATTCTCACCTGGGAAAATACCGGCGGATCTACCCcGGGCC	.	.	.
TALL032	GDPGP1	TTLL13P	+/+	+/+	15:90238548	15:90251554	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	24	6	low	.	.	read_through(3)	GCGAGGTGCATCCGCTTCGGCTGCA___GCTATTTACTGAGGACCCACTGGATGTCAAGCATTGTGCATAGTTTTCTTCGATTGTTGCAACATCCCTTGCGAG___TTTCTGGAGCAGCAGAGCTGAAGGAACCCAAACTTGGACTGAAGTGACTCTACTAAG|ATCACTGGCCATCAACCTGACCAACTGCAAGTATGAGAGTG___TGCGTCGGGCAGCCCAAATGTGTGGCCTGAAGGAGGTGGGGGAGGATGAAGAaTGGAC	.	.	.
TALL032	ELMOD2	LUC7L3	+/+	+/+	4:140535830	17:50740306	splice-site	splice-site	translocation	downstream	upstream	1	0	1	139	2130	low	.	.	duplicates(2)	GCAGCGAATATTTGATACCTATGTAGGTGCACAAAGGACACACAGGATAG___AAAATTCCTTGACATACTCCAAGAATAAG___GTTTTACAGAAGGCGACACATGTTGTTCAGAGTGAAGTGGACAAATATGTAGATGATATTATGAAGGAAAAGAATATTAACCCTGAGAAGGATGCCAG|GTCCGTGTGAAAAAATTCATGATGAAAATCTACG	out-of-frame	QRIFDTYVGAQRTHRIENSLTYSKNKVLQKATHVVQSEVDKYVDDIMKEKNINPEKDAr|sv*	.
TALL032	IPO9	EEPD1	+/+	+/+	1:201868796	7:36287639	splice-site	splice-site	translocation	downstream	upstream	1	0	0	220	125	low	.	.	.	GGGGGATTCCGTGTTGCCTTATCCACTTCAGATCCCGTCGTCGCCTCACTGGtTCAGGACATCTTCAAGGAGCTGTCCCAGATTGAAGCCTGTCAGGGCCCAATGCAAATGAGGCTGATTCCCACTCTGGTCAGCATAATGCAGGCCCCAGCAGACAAGATTCCTGCAGGGCTTTGTGCG|GTGGGAAGTCACGACCTGACCCTTGTTAACCTTCACCTGGCAGCCC	in-frame	ggfrvalstsDPVVASLvQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCA|VGSHDLTLVNLHLAA	.
TALL032	DPYD	CD244	-/-	-/-	1:97740392	1:160836253	splice-site	splice-site	duplication	upstream	downstream	0	1	0	330	375	low	.	.	.	GCCCCGTGTCAGAAGAGCTGTCCAACTAATCTTGATATTAAATCATTCATCACAAGTATTGCAAACAAG|AGCAGGAGCAGACTTTTCCTGGAGGGGGGAGCACCATCTACTCTATGATCCAGTCCCAG...ATATTCATTAATTCAGCCTTCCAGGAAG___TCTGGATCCAGGAAGAGGAACCACAGCCCTTCCTTCAATAGCACTATCTATGAAGTG___ATTGGAAAGAGTCAACCTAAAGCCCAGAACCCTGCTCGATTGAGCCGC	out-of-frame	APCQKSCPTNLDIKSFITSIANK|srsrlfleggapstl*	.
TALL032	SPTBN1	RNPC3	+/+	+/+	2:54649191	1:103555035	splice-site	splice-site	translocation	downstream	upstream	0	1	0	735	454	low	.	.	duplicates(1)	CGGGAGGTGGACGACCTGGAGCAGTGGATCGCTGAGAGGGAGGTGGTCGCAGGGTCCCATGAACTGGGACAGGACTATGAGCATGTCACGG|TTTTTTTGAATCCCGTGTCCTTCAAGTGCTTTCTAACTTTGAGAGGAAGAAATTGACCACCTGGACTATGGAACT___TTGGTTGAATCTGGCGATGTGGAACCCATGGATATGGAGGGCTGACTATAcACACC	out-of-frame	REVDDLEQWIAEREVVAGSHELGQDYEHVT|vflnpvsfkcfltlrgrn*	.
TALL032	CASC15	CDKAL1	+/+	+/+	6:22174062	6:20758595	splice-site	splice-site	duplication	downstream	upstream	1	0	0	195	109	low	.	.	.	GGCAGCTCTGTGTGTTGGATTATGTTTGGCCAGCTGTTGATGCATTCCTGCGGATGGGGCTGG___GCTCACAGGCAGAAGGAATTTTCCTTGTCTTGGATGAGACTTTTGACTTGGACTTTTGGGTTAAG|GTTCAGCAGATAGATCGTGTGGT	.	.	.
TALL032	CDKAL1	CASC15	+/+	+/+	6:20649377	6:22191567	splice-site	splice-site	deletion	downstream	upstream	1	0	0	103	430	low	.	.	.	GTCAGCACACCTGTTGTAATCAGTAAGAAGTTACAAGTAGTATGGAGCATCATTAATCCTGCTGTATAAAGCAGTCTTTTATGGAGTCTGATTCCTTTTAAGTAAAGAATCCTTACAGTGGTTTTGTGAACTT...AAATTACAG___AAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAACTCAATTAA|TTCTGGAGACCAGAAGGCCAAAATCAAAAGTATaGGCAG	out-of-frame	ITENASDADLWLLNSCTVKNPAEDHFRNSIn|sgdqkakiksig	.
TALL032	ANPEP	TPM4	-/-	+/+	15:89814774	19:16080913	splice-site	splice-site	translocation	upstream	upstream	0	1	0	106	996	low	.	.	.	GACGGGAAAGGAGGAGTCCAGTGCTGGAGGGGCAGGGACGGCGGCGGCGCAGCTCGGAACCCGCCAGGGTCCAGGGTCCAGGTTCCAGCGCCCGGCGGCCC|AGGTAAAAACACCTTGAAAAGCCAATAACACT...AAGTTTTCTTTCCCTTTCCATATCTTTTTGTCCTGCCATCTCTCAGCCAGGCGGATTGAAGGATGGAATTCCAACGAGGCTCCCCCGCCTCGTCCCACCTTG___GCTGAAGGTGATGTGGCCGCCCTCAACCGAC	.	.	.
TALL033	RP11-546B8.6	RP11-61O1.1	-/-	-/-	5:171307169	14:98204002	3'UTR	intron	translocation	upstream	downstream	69	40	19	357	236	high	.	.	duplicates(151),mismatches(6)	GACGGGGAAAGACAGGAGGTGCAGGTTGGGGATTCTTTCTCTCTTCTCCCAACAATCCAAAGGCGTCAGGATTTGCAGGGCCTCCAGGCCTGGGTCTGGAGTTAGGTCACTTGCCCGCTGTGTGACCTTGGGCAAATTCCTGGCCCTTGCTAAGCCTTCCTGGTGGGTGTGGAGAGGGAGGCCCAACAGTGAGGAGTGAGAGCTGCAGGATGTCTGGGGTCTGGGCAAGTGCTCCCTCACTCCCTTCCAGCGACAAgGACCCTCAGATGGGGTAGATGCCATTGCCCTGGCTCCAGGGGGCCTCCTGCTTCTAATTCAGGCTCTGCCACTGGCAGTGTGGGTCCCTAACCGCCCCTCCCAGAACCGCATTTTCCTTATTTGTAAAACAAAAAGGGCACCAGCTACCCCCAGGGTGGCTGTGAGAACAAAATGAGATAACATCTGTGGCAGTGCCTGTGTGAAACTCTGGCGGTTATATCATAATAACTTT|TGACCTGAAAAAAGACAAAGACAACCTCATCTGATGTGTGCATAGCCCAAGGGAGAGGCAATGGGAGATATTGTAATGCAATCTCCCAGACCCCAAAAAAGATGCCGACAAACTAGAATGATGAGCTAGCTACATTGGAGTGGATTTTCCTTGTAGAGGAAATTAAATCTGAGCAGAATCCgAAAAGATACTTTTCCTGTGAAGAAAATGAAGACATTTAAGCTGTTGTAGGGATTGGAAACACCGGGGAGACCTGATTTCTGTCTTCAAAGTTGAGAAGGCCACAGATCCCCCATTTGGCATCATAAAGCACGCGCTCATGGACAAAAGAAACCAGATTCAACTGCAGAGTTACAGCCTGCAGTGGCAGTGGTAGTGACGGGC...CAGGTTTCCTTCATTAGGCAGGGGTTTCCAGAGGAGCTACTCTACCTGAGAAGCAAAAGTGACCAAGACAGAGGAACTTCTTCTCTCCTAATCGTGCACTTCAGAGGAGGAGATACATGATAGTACCC	.	.	.
TALL033	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	63	40	14	400	398	high	.	.	duplicates(164),low_entropy(13),mismappers(1),mismatches(19)	ACCTCTAAGTGCAAAGTCCAGGTCAATGAAGTGTACGGGCTGGTGGATGGGCTGGTCACCTTCTACCTCCCGCTACTGATCATGTGCATCACCTACTACCGCATCTTCAAGGTCGCCCGGGATCAGGCCAAGAGGATCAATCACATTAGCTCCTGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGAC	out-of-frame	TSKCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL033	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	4	17	3	105	97	high	.	.	duplicates(20),low_entropy(1),mismatches(2)	GGGCCGGCCGGCGTGTGCGTTGCCGCAACCCCGCGTGGGTTCCACAAAAGGCGGCCCCGAGTCTCCGGGTCACG___...G___...CTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCG...ACGACCTCCGCATGTCCTCACgGCCTCCCCTCGGCCTGGACCCGGCCACTGCTGCAGCCTACTACCACCCCAGCTACCTGGCCCCACACCCCTTCCCCC	.	.	.
TALL033	NUP214	ABL1	+/+	+/+	9:131222930	9:130854064	splice-site	splice-site	duplication	downstream	upstream	2	5	8	188	528	high	.	.	duplicates(21)	GGGGAGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGTCAGGATGCAGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGATCCACAGCTACCTCAA___ATACCTCTAACCTATTTGGAAACAGTGGGGCCAAGACATTTGGTGGATTTGCCAGCTCGTCGTTTGGAGAGCAGAAACCCACTGGCACTTTCAGCTCTGGAGGAGGAAGTGTGGCATCCCAAGGCTTTGGGTTTTCCTCTCCAAACAAAACAG|AAGCCCTTCAGCGGCCAGTAGCATCTGACTTTGAGCCTCAGGGTCTGAGTGAAGCCGCTCGTTGGAACTCCAAGGAAAACCTTCTCGCTGGACCCAGTGAAAATGACCCCAACCTTTTCGTTGCACTGTATGATTTTGTGGCCAGTGGAGATAACACTCTAAGCATAACTAAAG___GTGAAAAGCTCCGGGTCTTAGGCTATAATCACAATGGGGAATGGTGTGAAGCCCAAACCAAAAATGGCCAAGGCTGGGTCCCAAGCAACT...GCAGTCCTGGCCAGAGGTCCATCTCGCTGAGATACGAAGGGAGGGTGTACCATTACAGGATCAACACTGCTTCTGATGGCAAG___CTCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAGTTGGTT	in-frame	GGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKT|eALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSN	.
TALL033	NUP214	ABL1	+/+	+/+	9:131222930	9:130854067	splice-site	splice-site	duplication	downstream	upstream	0	1	8	188	528	high	.	.	duplicates(12)	GGGGAGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGTCAGGATGCAGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGATCCACAGCTACCTCAA___ATACCTCTAACCTATTTGGAAACAGTGGGGCCAAGACATTTGGTGGATTTGCCAGCTCGTCGTTTGGAGAGCAGAAACCCACTGGCACTTTCAGCTCTGGAGGAGGAAGTGTGGCATCCCAAGGCTTTGGGTTTTCCTCTCCAAACAAAACAG|CCCTTCAGCGGCCAGTAGCATCTGACTTTGAGCCTCAGGGTCTGAGTGAAGCCGCTCGTTGGAACTCCAAGGAAAACCTTCTCGCTGGACCCAGTGAAAATGACCCCAACCTTTTCGTTGCACTGTATGATTTTGTGGCCAGTGGAGATAACACTCTAAGCATAACTAAAG___GTGAAAAGCTCCGGGTCTTAGGCTATAATCACAATGGGGAATGGTGTGAAGCCCAAACCAAAAATGGCCAAGGCTGGGTCCCAAGCAACT	in-frame	GGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKT|aLQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSN	.
TALL033	DNM2	CCDC159	+/+	+/+	19:10812377	19:11350808	splice-site	splice-site	deletion	downstream	upstream	1	1	1	651	142	high	.	.	duplicates(6),low_entropy(2),mismappers(1),mismatches(1)	AG___ATGGAGTTTGACGAGAAGGACTTACGACGGGAGATCAGCTATGCCATTAAGAACATCCATGGAGTCAG___GACCGGGCTTTTCACCCCGGACTTGGCATTCGAGGCCATTGTGAAAAAGCAGGTCGTCAAGC...ACGGGAGGGGAGAACGAAGGACCAG___ATTCTTCTGCTGATCGACATTGAGCAGTCCTACATCAACACGAACCATGAGGACTTCATCGGGTTTGCCAA___TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGAGCCATCCCCAATCAG___GGGGAGATCCTG___GTGATCCGCAGGGGCTGGCTGACCATCAACAACATCAGCCTGATGAAAGGCGGCTCCAAGGAGTACTGGTTTGTGCTGACTGCCGAGTCACTGTCCTGGTACAAGGATGAGGAG|AGGTGCTGAGCCCCACAGGCCGCCAGGGAGAGAAGGAGGAGCACAAGTGGGGCATGGAGCAGGGCCGGCAGGAGCTGTATGGGGCCCTGACCCAAGGCCTTCAGGGGCTGGAGAAGACCCTGCGTGACAGTGAGG...GGTGAACATTCAGAAAATGCAGAAAACGCAG___ATCCTGACCAAGATGAAGCAGCAGGGTCATGAGACAGCCGCCTGTCCGGAGACTGAAGAGATACCGCAGGGAGCCAGTGGCTGCTGGAAGGATGACCTCCAGAAGGAACTGAGTGA	out-of-frame	REGRTKDQILLLIDIEQSYINTNHEDFIGFANAQQRSTQLNKKRAIPNQGEILVIRRGWLTINNISLMKGGSKEYWFVLTAESLSWYKDEE|rc*	.
TALL033	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	1	18	2	117	66	medium	.	.	duplicates(26),low_entropy(1),mismatches(2)	GGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCC...CAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACC	.	.	.
TALL033	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	6	2	81	44	medium	.	.	duplicates(15)	AGGTGCCCGAGCCGCAGGGTGCGCCCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGcGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAG	.	.	.
TALL033	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	5	2	0	475	38	medium	.	.	duplicates(9),mismappers(1),mismatches(2)	CCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGA	.	.	.
TALL033	FBXW7	SLC25A4	-/-	+/+	4:152411303	4:185144764	splice-site	splice-site	inversion	upstream	upstream	1	0	1	69	13	medium	.	.	duplicates(4)	GGCCAAAATGATTCCCAGCAAGGACAGTTGGAAGAAAACAATAATAGATTTATTTCGGTAGATGAGGACTCCTCAGGAAACCAAGAAGAACAAGAGGAAGATGAAGAACATGCTGGTGAACAAGATGAGGAGG...GGAGAGTGACGATTTTGATCAGTCTGATGATAGTAGCAGAGAAGATGAACATACACATACTAACAGTGTCACGAACTCCAGTAGTATTGTGGACCTGCCCGTTCACCAACTCTCCTCCCCATTCTATACAAAAACAACAAAA|GTCCAGCATGCCAGCAAACAGATCAGTGCTGAGAAGCAGTACAAAGGGATCATTGATTGTGTGGTGAGAATCCCTAAGGAGCAGGGCTTCCTCTCCTTCTGGAGGGGTAACCTGGCCAACGTGATCCGTTACTTCCCCAC	in-frame	ESDDFDQSDDSSREDEHTHTNSVTNSSSIVDLPVHQLSSPFYTKTTK|VQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP	.
TALL033	TRBV6-5	IFFO2(19580),RP5-1126H10.2(95844)	+/+	./-	7:142451437	1:18976266	CDS	intergenic	translocation	downstream	downstream	0	0	62	630	370	low	.	.	duplicates(95),mismatches(1)	GCCTCCCCAGCCATGTGGAACT___GTCCAGTGAATGCTGGTGTCACTCAGACCCCAAAATTCCAGGTCCTGAAGACAGGACAGAGCATGACACTGCAGTGTGCCCAGGATATGAACCATGAATACATGTCCTGGTATCGACAAGACCCAGGCATGGGGCTGAGGCTGATTCATTACTCAGTTGGTGCTGGTATCACTGACCAAGGAGAAGTCCCCAATGGCTACAATGTCTCCAGATCAACCACAGAGGATTTCCCGCTCAGGCTGCTGTCGGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCC...|...CGCGGAGGTGGCTGTCTGCCTTCCTTTTTCTGTCTCACTTCCTCATCCTGGGATCACCTCCCCAGTTTCACCATATTGGGGGGTTTCACCATATTGGCCAGGCTGGTCTCAAACTTCTGACCTCAAACTTCTCACCCCAGTAAGCaACATATTCAGGTACACGAAGCCTTGTATCAGATCAGCTTTTGGGGGCACCCTGGCTTAGGCAGTGCTCCCAAGCACTAGTTGTGATTATGGTCCTATGGGG...___T...___GA	.	.	.
TALL033	CTCF	RANBP10	+/+	-/+	16:67590285	16:67727475	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	4	8	54	29	low	.	.	duplicates(21),mismappers(2),mismatches(5)	ATGGTGGGCATTTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCACTTGAACGCAGGAGGCGGCCGTTGCAGTGAGCCAAGATGGCGCCATTGCACTCCAGACTGGTCAACAAGAGCGAAACTCCGTCTCAAAAAAAGAAAAAGAACAGTTAGAACTTTTTTTTTTTTTTTTAAAGAAGAGAGTTCCTTTCTACAGCAGCGTCAGCCACCTTTTGGCGAAAGAATTATTGTCTAGCCTTTATTATTCTTTGTAGCAAAAGAACTCCTTCCCCTCCTCCCATACTAGTTTCACTGTTGCCATTACAAATATTTTATTAGTACGTATTTC|c|CctgtaActcgAaaCgaCTACCCGTGGCTCCAGAGGGAGACAGGGCCCTGCATGATGCCCAGCCTGGAATGTGGGGTGTAGGGTCGGGCAGGGCTGTACTCTCCCCAGAGCCTAGGTGTGGAGGGCACATGTCCAGTGGGCCCAGATGCCCCACTTCCCTCTGCAGACCTGGCTGGAGCCCACTCTTTCCTGCTGCCCCCTGGACTCTCCCAGAGCCACCCTGCCCCCAACACCAAATGGGGCCTGCTCTGCATGAGGCCCGGCTCATCCTGTACCTGCAGCATCTCTGTGTGGGCC	.	.	.
TALL033	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	6	1	48	40	low	.	.	duplicates(6),low_entropy(1),mismatches(2)	GCTCCGAAAAGTTAGACTCCGGGCGGCGGCGCGCTACGCCGCGTCCCCTCGCGTCCCTTCCTCGCTGCGCTCCGGGAAAGGAACTTGTTCCTTCGGCCCCAGGATTGGGGAGTGTGCCGCGGGGCgGAGGG...GGGCGAGATGGGCCTCTTCTGTTTTGGCTGGCAACAGACAGTCTGCAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAG...AAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTT	.	.	.
TALL033	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510703	7:22321010	exon	intron	deletion/read-through	upstream	downstream	0	0	7	9663	2	low	.	.	duplicates(7),low_entropy(4),mismappers(1),mismatches(27)	GGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGT...|...TACATAGGAT	.	.	.
TALL033	HERC6	HERC6(12141),HERC5(1865)	+/+	./+	4:88437763	4:88455252	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	6	61	73	low	.	.	duplicates(15),mismappers(1)	GTCGGGCTTTTGATTGTGTCTTTGACCTGGTAGTGAAATGAAT___TTTGATATTTGGTACCTGAATACATTTTGGTTACAGATACACTGGGACCAAAATGATGTTGACTTAATTCCAAATGGGATCTCCATACC...|...CAGCTAAAATCCAGGTTCTTGTCTCATGACCAGGAACAATTAGGCATGTGAATACATTGCAAGGTGAAGAGTGGCATTTATTAAAAGCTCTTAGCAAAAAAACAAGGAGGGTCCTGCCAACAGGCTCCCAGCTCACAGACTGAATAACAGGCCAACACACACAAGCTGAAGACTTCTTGCTCATCCCTGCTGCATAAGGCTGAATTCCCTCTGGCT	.	.	.
TALL033	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511638	7:23314872	exon	intron	deletion	downstream	upstream	0	0	6	10669	2	low	.	.	duplicates(8),low_entropy(3),mismappers(2),mismatches(32)	.	.	.	.
TALL033	EEF1A1P13	ANKH	-/-	-/-	5:14653166	5:14715867	exon	intron	deletion/read-through	downstream	upstream	0	0	5	91	15	low	.	.	duplicates(5),low_entropy(2),mismappers(2),mismatches(49)	...TCAAGTATGcCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCAtTGATGCcCCAGGACACAGAGACTTgATCAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCtGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCcAAGAATGGGCAGACCCGAGAGCA|...CTTTTGTCTCAGCCATGGGCAGTTTCTTTTCTGACCATCCATCTGGCCTCAGGTTCCCCTGGAGTCTTCCTTTCTCCAGCAGTCCTTCTCTGTCTTTGTATATCTCCAGGC	.	.	.
TALL033	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	0	5	0	154	143	low	.	.	duplicates(11),mismatches(1)	AGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGC	.	.	.
TALL033	RP11-765K14.1(13263),RN7SKP136(287574)	VEGFC	./-	-/-	4:176893868	4:176780807	intergenic	intron	deletion/read-through	upstream	downstream	1	0	4	168	18	low	.	.	duplicates(11)	CAGGCATGGAGTATACAG___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC|GAGCAGTGCTAGTGTGACAGCCTCAAGTCATGTTAACACGACACAC	.	.	.
TALL033	EEF1A1P6	DNAH11	-/-	+/-	7:22510797	7:21805364	exon	intron	deletion/5'-5'	upstream	downstream	0	0	5	19216	1	low	.	.	duplicates(6),low_entropy(4),mismatches(32)	GCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTG...|...AAGCAGTCCACA	.	.	.
TALL033	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	80	10	low	.	.	duplicates(5)	GGTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGC	out-of-frame	vvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalsw	.
TALL033	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	4	0	72	10	low	.	.	duplicates(4)	GAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCT	.	.	.
TALL033	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176780807	intergenic	intron	deletion/read-through	upstream	downstream	0	2	2	120	18	low	.	.	duplicates(7),mismatches(1)	CTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GAGCAGTGCTAGTGTGACAGCCTCAAGTCATGTTAACACGACACACGTAGAAGACTGACGCTCGGGCTTCCTCTAGTGCAAAACACCTGAAATTCAAATTTTGCTTTTCTGTGCTATTTTCCTAATTAAATGTATCCTTGATGTTGAGTTTAACTTTATTACACCCCTGTTAAATATCTGCAATGTGTTGGGAAGGAGGAG	.	.	.
TALL033	DDTL	AP000350.6(2381),AP000350.7(8043)	+/+	./-	22:23972219	22:23931955	3'UTR	intergenic	inversion	downstream	downstream	0	4	0	35	24	low	.	.	.	ATGGGGATAGCATGTCTTGTCTGAGCAAAGGGAGAGTG|CACCAAACTTTGGGTAACAAACAgTTTAAACTTGTTTTTTTAGACATTCAGTAAGCCCTTTCTCCCCCCTCCCCAAACCGTTTGATTACAAAGAAGCACAATGGGTTAACTGTGGCAAAACATAAGAAATAAGGCAGGGGAGGCAGGTGCAGCC	.	.	.
TALL033	VEGFC(53785),RP11-624A4.1(20102)	VEGFC	./-	-/-	4:176846512	4:176780807	intergenic	intron	deletion/read-through	upstream	downstream	2	0	1	65	18	low	.	.	duplicates(6),low_entropy(1)	TCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGGGTGAGTCCTCTAGAGATGAAGAGACATTCTGCTGGATGACTTTTTAAAATGTTTTCTTCAAAGTCGTCTGCTTCACTAACAATGGTTTTTGTCTTAGAAGTCTCCCTTTGATTTTATAAACTGACACATCTGCTTCTTCCAGCTTACAGAACTCTGAAG|GAGCAGTGCTAGTGTGACAGCCTCAAGTCATGTTAACACGAC...CCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGACTATAAAATTTGCTGCAGCACATTATAATACAGAGAT	.	.	.
TALL033	WAPAL	LMF1	-/.	-/.	10:86499923	16:858596	CDS	intron	translocation	downstream	upstream	0	0	3	119	73	low	.	.	duplicates(1)	.	.	.	.
TALL033	EEF1A1P13	DNAH5	-/-	-/-	5:14652054	5:13804296	exon	intron	deletion	upstream	downstream	0	0	3	68	0	low	.	.	mismatches(2)	GCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCtGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGtTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTG...|...ATCAGTAGAGGG	.	.	.
TALL033	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	328	822	low	.	.	duplicates(5),low_entropy(3)	CAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCT...GCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAGCTAATAATATAGAACA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL033	RMND5A	AC093616.4	+/+	+/+	2:86741053	2:87716734	CDS	exon	deletion	downstream	upstream	0	0	3	465	48	low	.	.	duplicates(3)	AGCCACG___GCCAAGATGCTGAATTATCAGGGACACTTTCACTTGTTTTGACACAGTGCTGTAAAAGAATAAAGGATACTGTTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGTGTTTCTCGGGTTGG...|...GGACGTCAGGATCTTTCCAAGCAGGCCTGCGAAGGAAACTTACCCAAAGGGAAGTCT___GTGCTCTCATCAGATGTTCCTTCAGGaACAGAAACTGAGGAGGAAGATGACGGCATtAATGACATGAATCACGAGG	.	.	.
TALL033	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	86	415	low	.	.	duplicates(2),low_entropy(1),mismatches(2)	GATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGAC	out-of-frame	DGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL033	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	276	415	low	.	.	duplicates(3),low_entropy(1),mismatches(1)	GTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCT	in-frame	VYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETF	.
TALL033	RP11-514P8.8	CUX1	-/-	+/-	7:102494607	7:102265518	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	93	2	low	.	.	mismappers(2),mismatches(2)	CGCCCAGCACGAG___AATGTACCGTTCATCGCCGTCACCAGCTTCCTGaGCCTGCGaTTCTTCTCTCCCGCCATCATGTCGCCC...|...CTGCAGTGAGCG	.	.	.
TALL033	C19orf24	HNRNPA1P32(10942),RP11-253D19.1(24051)	+/+	./+	19:1279134	10:30529803	CDS	intergenic	translocation	downstream	upstream	0	0	2	137	26	low	.	.	duplicates(3)	GTCCCAGCCTGGCCGAGGGTCCCAGGTGAAGACTGGAGGGACCCCAACAGCCACCGCCCAGGACGCTGAGGCTCCCTTGCCTGACTGTGACTTGTGCCTCTCTCCTGCCCCCGTGGGGACATGGCAGCCC...|...GTGGTTTTACCCTCGCCACTTATTTCGTGGTCATTCATTG___GGATGGTATCTCTCTTCCTACCTTGCAGCTATGCTGTGAAGAGTAAGAGGAAGTATTCTGAAAAGTGCAAGGTCTTATACTGAG___AAAGGCAC	.	.	.
TALL033	PPCDC	SCARNA20(9460),RPL36AP45(55525)	+/+	./+	15:75090694	15:75131126	intron	intergenic	deletion/read-through	downstream	upstream	1	0	1	5	13	low	.	.	duplicates(4),mismappers(1)	GTCGAGATCCCCTGTGTGGCCAAGAAGCTGGTGTGCGGAGATGAAG___GTTGGACTGCAGTGGTGCGATCATGGCTCACATACAGCCTCGACTTCCCTGGACTCAGGTGTTCCTCGCACCTCAGCCACCAGAGG...CCAGGCTCACCTTCTTGATTCTTGCC|CCCCTGACAACCACTATTCTACTTTCTGTTTCTATGAATTTGACTACTATAGACAACTCAT___GCTCCATCCTGCgCCAGGAGCAGCCTCGGGTTCGCGTGTGTGGGAG	.	.	.
TALL033	ACTR2	AC074391.1	+/+	+/+	2:65270660	2:65660466	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	1635	1	low	.	.	duplicates(1),mismappers(1),mismatches(1)	AGGACGCGTATGTAGGGCCCGTACCTACTGGCAGTTGGGTTCAGGGAAATGGGAgTGACTTGGCCTTCAGGCTCCTTTGGTCATAATTTTAAAATATGGGAGTAGAAAACAACAcAGAATGG...|...TATGAGCCCC	.	.	.
TALL033	RN7SL596P(14649),C11orf84(668)	C11orf95	./-	-/-	11:63812720	11:63766304	intergenic	splice-site	deletion/read-through	upstream	downstream	1	0	1	26	16	low	.	.	duplicates(3)	GCCAGCTCCGTGGCCGTGGGCACATTATCTGTTTTCTTAGTCCGGCTCATCGTTTCTTTCAAAAACCATTTTGGACCCTTCTGGGAAGGCAAAGAAGAGAAGCAGAGTGGACTGTGAGCGGACATAAACCAC...GGCACGGGAGTCCGGAGATTTTGTGACCCTCTCCAAGGACACACAGCAATCCCTTGAGAGCCCCAAGACCAGAGTCCAGTTGCCATGACATTGCTGCCCTATAACCACACTCTGG|GGCAAGATCTTCAGCTGGAAGGGGG...GCCGTGACCACCGGCGCTACTACCACGACCACTGGCGGCTGGAGTACCTGATGGACTTCAACCCTGCCCGGCACGGCATGGTGTGCATGGTGTGCGGCAGCTCCCTGGCCACCCTCAAGCTCAGCAC	.	.	.
TALL033	HSF2	RP11-365H23.1(429),AL603766.1(63606)	+/+	./+	6:122422731	6:149113101	CDS	intergenic	deletion	downstream	upstream	0	0	2	278	25	low	.	.	.	GCCAAGGGAGAGGATTTCAGATGACATCATTATTTATGATGTTACTGATGATAATGCAGATGAAGAAAATATCCCAGTTATTCCAGAAACTAATGAGGATGTTATATCTGATCCCTCCAA___CTGTAGCCAGTACC...|...CAGATGTCTGGGTTTGCCCAGGAAGGTCTCACTTCACTCATACTACTGATATGCACAAGAGGCAAGGAAATACCGGGTAGTAGAGGGTGGTTCCCCAGCAAAGGCCCCACCCTCAAGCCTGGTCACCCAAGGC	.	.	.
TALL033	TOX	RAB2A	-/-	+/+	8:59118886	8:60572046	splice-site	splice-site	inversion	upstream	upstream	0	2	0	220	589	low	.	.	duplicates(1)	CCACCTCCAGCCCAGCCCGCCGCTGCGCCCGACGCTCCCTGTCTGGGACCTTCTCCCTGCCTGGACCCCTACTATTGCAACAAG|GTGTAGAGTTCGGTGCTCGAATGATAACTATTGATGGGAAACAGATAAAACTTCAGATATGGG...AGAGATACATTCAACCACTTGACAACCTGGTTAGAAGATGCCCGCCAGCATTCCAATTCCAACATGGTCATTATGCTTATTGGAAATAAAAG___TGATTTAGAATCTAGAAGAGAAGTAAAAAAAGAAGAAGGTGAAGCTTTTGCACGAGAACATGGACTCATCTTCATGGAAACGTCTGCTAAGACTGCTTCCAATGTAGAAGAG___GCATTTATTAATACgGC	out-of-frame	PPPAQPAAAPDAPCLGPSPCLDPYYCNK|v*	.
TALL033	FAM161A	CCT4	-/-	-/-	2:61842122	2:61872316	splice-site	splice-site	duplication	upstream	downstream	0	1	1	32	766	low	.	.	duplicates(6)	AGTGGTCATCAGAGAAGACTCTCTTAGTGACTCTTCCAG|GGCTCTTATTGCAGGAGGTGGTGCTCCAGAAATAGAGTTGGCCCTACGATTAACTGAATATTCACGAACACTGAGTGGTATGGAATCCTACTGCGTTCGTGCTTTTGCAGATGCTATGGAGGTCATTCCATCTACACTAGCTGAAAATGCCGGCCTGAATCCCATTTCTACAGTAACAGAACTAAGAAACCGGCATGCCCAGGG	in-frame	VVIREDSLSDSSr|ALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQ	.
TALL033	FAM96B	EDC4	-/-	+/+	16:66934222	16:67877510	splice-site	splice-site	inversion	upstream	upstream	1	0	0	866	157	low	.	.	.	GTGGTGGTTCCGCGATGGTAGGCGGCGGCGGGGTCGGCGGCGGCCTCCTGGAGAATGCCAACCCCCTCATCTACCAGCGCTCTGGGGAGCGGCCTGTGACGGCAGGCGAGGAGGACGAGCAGGTTCCCGACAGCATCGACGCACGCGAGATCTTCGA|GAAGAGATCTTGGTCCATATTCGGCAGCCAGAGGGCACGCCACTGAACCACTTTCGCAGGATCATCTGGTGCCCCT	out-of-frame	MVGGGGVGGGLLENANPLIYQRSGERPVTAGEEDEQVPDSIDAREIFe|krswsifgsqrarh*	.
TALL034	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	4	31	9	87	179	high	.	.	duplicates(35),low_entropy(2),mismatches(6)	CCCCCaTCTCTCTTTTCCTTTCAAATGAGTAATCCCTGAAGATCTTAACCCCCCAATTTCATCACCCTCcCCTCCCCCC...ACCTCATTGTGGATCTGCCAGGGCCAAG___...GGGGGG...___...A...___...TTTTTTTTT...___...CTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGC	.	.	.
TALL034	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	12	7	3	72	82	high	.	.	duplicates(28),low_entropy(3),mismatches(2)	GCCCGGGATCAGGCCAAGAGGATCAATCACATTAGCTCCTGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAG	out-of-frame	ARDQAKRINHISSWKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL034	TPST1	TYW1	+/+	+/+	7:66292624	7:67183126	intron	splice-site	deletion	downstream	upstream	2	7	0	20	57	high	.	.	duplicates(10),mismappers(1)	CCGTGGGgGTAGGACCCTCTGAGCCAGGTGTGGGATATAGTCTCGTGGTGCGCCGTTTCTTAAGCCgGTCTGAAAAGCGCAATATTcGGGTGGGAGTGACCCGATTTTCCAG|CAACAACGAACTGTCTACAGACTGACGCTCGTGAAAGCATGGAAtGTGGACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGaAATCCTGACTTCATCGAAGTGAAG___GGCGTTACCTACTGCGGAGAAAGTTCAGCAAGCAGTCTTACCATGGCCCACGTGCCCTGGCATGAGGAAGTGGTACAGTTTGTCCgCGAGcTGGTGGATCTGATCCCCGAATATGAAATTGCATGTGAACACGAACACTCTAATTGCCTCCTGATAGCACACAGAAAG___TTTAAAATTGGTGGTGAATGGTGGACATGGATCaATTATAACCGCTTCCAGGAGCTCATCCAGGAATATGAAGATAGTGGTGGATCAAAAACGTTCAGCG	.	.	.
TALL034	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	17	1	87	66	medium	.	.	duplicates(17),mismappers(1)	AGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGC...GTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGT	.	.	.
TALL034	RP11-680G10.1	GSE1	+/+	+/+	16:85357643	16:85633914	splice-site	splice-site	deletion/read-through	downstream	upstream	5	1	0	14	179	medium	.	.	duplicates(2)	CTGGTGGCTACCTGTGTGCTCTGCTACCATGACCTGCTGGCCCAGTGGCTGCAGCATGAGGCCCGCAGCTCCCACCACGCTGTCAGCGCCTGGTCCCGGCAGTACCAGGTGGAGACGgTCGTGTGCTTCTTT...CGTGGAGTGTGGGACCCTGGTGTGTGCGGGCCAAGGGCTCACCCGCCAAGGACCCATGAGCTGGAGCTCCCCGGTGGCAGCAGCGACGAAG...AGCCTGTTTGTGGATCTCTGGAAGCATCTGCAGCCAGCCACCCTCCCACCCGGGAGTCCGAGACCCGGCCACGCGCCCCCACGGAGACCCTGCCCAGAGGCCCCAGGATGGCCCAGGAGCTGAGGCCAGCACAGTGTCTGCAGAGCAGCCGGGAGGAGGACGGACCAGACCTTACTGGTGCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTC...GCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCA	.	.	.
TALL034	RP11-680G10.1	GSE1	+/+	+/+	16:85357643	16:85648552	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	0	14	339	medium	.	.	duplicates(1)	GCCTGTTTGTGGATCTCTGGAAGCATCTGCAGCCAGCCACCCTCCCACCCGGGAGTCCGAGACCCGGCCACGCGCCCCCACGGAGACCCTGCCCAGAGGCCCCAGGATGGCCCAGGAGCTGAGGCCAGCACAGTGTCTGCAGAGCAGCCGGGAGGAGGACGGACCAGACCTTACTGGTGCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCcCC	.	.	.
TALL034	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	2	0	309	63	medium	.	.	duplicates(7),mismappers(1),mismatches(1)	GACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGAT	.	.	.
TALL034	FRY	NAA30	+/+	+/+	13:32157405	14:57399828	splice-site	splice-site	translocation	downstream	upstream	0	2	0	4	78	medium	.	.	duplicates(2)	GAACCGGAAGACATGATCAC|GTACTAACTTGGTTAAGAAAGCTATATATGCCATGGTTGAGGGAGACTGTGATGAG___GTTGTTTTGGAAACCGAAATAACAAATAAGTCCGCTTTGAAACTTTATGAAAATCTTGGTTTTGTTCGAGATAAGAGGCTGTTCAGATACTATTTAAATGGAGTTGATGCACTGCGACTTAAACTGTGGCTGCGTTGAGAAACTGACATCAAGGAACAACTATCATCCaCACAGAATCGACCTTTGCATGCAATGCAATTTGTACAGAATTGCTTTGCAGGTGGATTTAGTAATTTCCATGC	out-of-frame	EPEDMIt|y*	.
TALL034	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	8	0	59	13	low	.	.	duplicates(1)	AGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACC	.	.	.
TALL034	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	4	0	16	22	low	.	.	duplicates(3),mismatches(1)	ACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAG...CGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAG	.	.	.
TALL034	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	1	20	16	low	.	.	duplicates(4),mismatches(2)	GTGCTGCATGGAAGGGAAaGAGAAAGGGATTCCGTACACAGTGAGTTCTGCCGAGCAGCCGGAGGCTTTGTGTATGGCGCTGTTCCGGTTTCTG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGT	.	.	.
TALL034	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	3	32	161	low	.	.	duplicates(4),low_entropy(1),mismatches(1)	GCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAAC	out-of-frame	AGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL034	EEF1A1P13	TRIO	-/-	+/-	5:14652605	5:14517538	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	107	0	low	.	.	duplicates(5),low_entropy(1),mismatches(5)	TTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCC...|...AAAGAAGCACTGAT	.	.	.
TALL034	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	3	1	0	6	30	low	.	.	duplicates(9),low_entropy(15),mismatches(1)	GCGCCGGGACCTGAGTCCGTGGCGCCGGCGCTGAGCGGGCCCCCGCCGCCCGCGCACTCCCGAGGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGCAGCAACAATGGCAAACGTGCATCTGCCAGTGGCCAGCAGC	.	.	.
TALL034	EEF1A1P6	DNAH11	-/-	+/-	7:22510782	7:21892976	exon	intron	deletion/5'-5'	upstream	downstream	0	0	4	2996	0	low	.	.	duplicates(3),low_entropy(2),mismatches(10)	ATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTG...|...CAGAATGAAAGGAG	.	.	.
TALL034	GATS	PMS2P1	-/.	-/.	7:100266651	7:100325746	intron	intron	deletion/read-through	downstream	upstream	0	0	3	6	279	low	.	.	duplicates(2),mismappers(2),mismatches(1)	.	.	.	.
TALL034	EEF1A1P6	RAPGEF5	-/-	-/-	7:22511221	7:22269137	exon	intron	deletion/read-through	upstream	downstream	0	0	3	205	0	low	.	.	duplicates(1),mismappers(1),mismatches(1)	CCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGT...|...CGTACATCC	.	.	.
TALL034	FP236383.8	bP-2189O9.2(105672),MIR3648-1(351)	+/+	./+	21:8391168	21:8986648	exon	intergenic	deletion	downstream	upstream	3	0	0	17	6	low	.	.	duplicates(1),mismatches(1)	GGGTGTGCGCGCCCGGCGCTCTGTCCGGaGCGTGACTCCCTCCGCCGCGAGTCGGCTCTCCGCCCGCTCCCGTGCCGAGTCGTGtCCGGTGCCGACGACCGCGTTTGCGTGGCACGGGGTCGGGCCCGCCTGG...GGCGTGTCGGGTTCGTGGCTGCGGTCGCTCCGGGGCCCCCGGTGGCGGGGCCCCGGGGCTCGCGAGGCGGTTCTCGGTGGGGGCCGAGGGCCGTCCGGCGTCCCAGGCGGGGCGCCGCGGGACCGCCCTCGTGTCTGTGGCGGTGGGATCCCGCGGCCGTGTTTTCCTGGTGGCCCGGCCGTGCCTGAG|GTTTCTCCCCGAGCCGCCGCCTCTGCGGGCTCCCGGGTGCCCTTGCCCTCACGGTCCCCGGCCCTCGCCCGTCTGTGCCCTCTTCCCCGCC...AAATGAGCATGC	.	.	.
TALL034	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511184	7:23438598	exon	intron	deletion	downstream	upstream	0	0	3	5349	1	low	.	.	duplicates(1)	.	.	.	.
TALL034	ADCYAP1	RP11-78F17.1	+/+	+/+	18:951278	18:1133843	intron	splice-site	deletion/read-through	downstream	upstream	1	0	1	10	16	low	.	.	duplicates(4),mismappers(2),mismatches(2)	AGGGAGCCCCGCCTCCGCGCCGCGCGCCGCCGCCGCCTGGTACCGCCCGGCCGGGAGAAG...AAGCTGAATTGGAAAATCCAGCAATAGGAAGAAGAGATGGCTGCTGCTGTTCCTGGATCTAGAAAGGAGAGAAGCTACTCAGGGAGCTCTTGATCCTATGCTCAGGGGGAAACATACCAGGAAATTACAG|GGTCTGGAAATAACTGGGAAAGAAAAGCCTTGTGGAAAGAAGACATCTCCAG___GaAAAACATGCTGCTTaTTCAAAGACTCCAATTTCAGATGGCAAAATGCATGGAAGaTaAGATGGACCTTCTGGAGTTTTCGATAAA	.	.	.
TALL034	PABPC3	ATP8A2	+/+	+/+	13:25098102	13:25738582	3'UTR	intron	deletion	downstream	upstream	0	0	2	3	0	low	.	.	duplicates(1)	GCTCGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTACTACAAGCCCACCAAGCTAAAGAGGCTgCCCAGAAAGCAGTTAACAGTGCcACCGGTGTTCCAACTGTTTAAAATTGATC...|...GCCTGGAGGGC	.	.	.
TALL034	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	0	0	11	14	low	.	.	duplicates(5),low_entropy(1),mismappers(2),mismatches(1)	CGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCC	.	.	.
TALL034	NPAS1	SAE1	+/+	+/+	19:47043673	19:47116009	intron	intron	deletion/read-through	downstream	upstream	0	0	2	1	2	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(1)	CTGAGGCAGGAGAGTCGC...|...AAAAAAAAAAAAAAAGAAGTCATAACATTAGCCCGGCTTCATGCTATGCACCTGTGGCCCCAGCTACTTGGGAGGCTGAGGC	.	.	.
TALL034	TEKT4P2	pRNA(1394),FP236383.7(678)	-/-	./-	21:9068653	21:8434568	exon	intergenic	deletion	upstream	downstream	0	0	2	45	82	low	.	.	.	CTCGTAATT...CTCTGCCCTAGAGCCGCTTTCCTGGTgGGATCCTTTCATGGCGTCTTCCCAGGACCTCCTGCCAGCTCaCATTGGGAGTTTTGGGTCCCCTgCACCCCgGTAGGTGCATACTTCTGCCCTCCCCAGCCCCAGC...|...CGAGGGACGCCTGGGGAAGGGAGGGGGCCCTGCGGTACGAGGAAACACCTGCGCGCGGCCACCTCGAGCGTTCGCGTTCAGGGCGGGGGCCCGGCCGGTGCGCGCGTGCGCGCAACCCCACCAGGCCCCCCCGTCCACCCACCTCCTTCCTTCCGAGGCAGAGCGCCTCCGAAGTCAACCCACACACGACCGG	.	.	.
TALL034	SETD5	ARPP21	+/+	+/+	3:9397977	3:35729303	splice-site	splice-site	deletion	downstream	upstream	0	1	0	62	133	low	.	.	duplicates(2)	CCCGGGAGTGCCGTGCGCCGCAGCCCGGGCCCAGGCCCCGGCAGCGCCTGGGACAAG|GTTCCGAGTCTTCCAGCAGTGCAGGCTCCTCAGGATCGCTGTCCCGCACCCATCCACCTCTCCAGAGCACACCCCT...GCTGTGTGCCTTATCCAGAGAATGGAATAGGGGGCCAGGTTGCTCCCAGCAGCACCAGCTACATCCTCCTTCCACTTGAAGCTGCAACAGGCATCCCGCCTGGAAGCATCCTTCTTAATCCACACACAG___GCC	.	.	.
TALL035	KANSL1	RP11-707O23.1(5132),RP11-707O23.5(2368)	-/-	./-	17:46170855	17:45598501	splice-site	intergenic	deletion	upstream	downstream	2	3	2	152	45	high	.	.	duplicates(4),mismappers(1),mismatches(1)	CTTGAGACCACGGAGCCAGTTGATGCTGACTCGAAAGGCTGAAGCTGCCTTGAGAAAAGCTGCCAGTGAGACCACCACTTCAGAGGGACTTAGCAACTTTCTGAAAAGCAATTCAATTTCAGAAGAATTGGAGAGATTTACAGCTAGTGGCATAGCCAACTTGAGGTGCAGTGAACAGGCATTTGATTCAGATGTCACTGACAGTAGTTCAGGAGGGGAGTCTGATATTGAAGAGGAAGAACTGACCAGAGCTGATCCCGAGCAGCGTCATGTACCCCT|AATTCTCAATCGCAATCCTCTGACAACTGTTGAAGATCCGTATCTCTTTAAATTACTGGCATTAAAATATCt___AGACGTGGGAACAACGCAAGTCCCACTTACAACACTTAAGAACATTCTCATGATGACCGTTGAACTGGAAAAACT___GCTGTAGTTCCTCACTGAATATTGGTTGAAGACTTCATTGGCTTACTACCTGGACTTCTCCACACACTGCCTGAATGTCCTCCCCACATAGCTAGAGTGAATGAACTAAAAAAGAGAGAG	out-of-frame	LRPRSQLMLTRKAEAALRKAASETTTSEGLSNFLKSNSISEELERFTASGIANLRCSEQAFDSDVTDSSSGGESDIEEEELTRADPEQRHVPl|ilnrnplttvedpylfkllalkyldvgttqvplttlknilmmtvelekll*	.
TALL035	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	2	1	0	10	6	high	.	.	duplicates(1)	ATAAAAGTAGGTCTGCCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAG	.	.	.
TALL035	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	8	3	66	97	medium	.	.	duplicates(2),low_entropy(1),mismatches(3)	CGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGGGTAGAGATACATATGGAGTCAGACCTTTGTTTAAAGCAATGACAGAAGATGGATTTTTGGCTGTATGTTCAGAAGCTAAAG___GTCTTGTTACATTGAAGCACTCCGCGACTCCCTTTTTAAAAGTGGAGCCTTTTCTTCCTtGA	.	.	.
TALL035	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	6	4	2	39	19	medium	.	.	duplicates(4)	AGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CAC...ATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTG?TTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAG...CCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAACACGGGACTATGAGGATGTGAATGAAGAAGATCTCCTGGAATAGAGGAACTGAAATTGACAACGCAAATGGGGA	.	.	.
TALL035	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	2	72	11	medium	.	.	duplicates(1),low_entropy(1),mismappers(1)	ATTTGCCATCATTGGGATCAACTTGTTTAGAGGCGTCATTGTGGCTCTTCCTGGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGTAAATTATAACAAAACCCAATGGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCCCTGTC	out-of-frame	FAIIGINLFRGVIVALPGNSSLAPANGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL035	TPCN2	RP11-554A11.9	+/+	+/+	11:69085930	11:69159446	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	72	12	medium	.	.	.	CGTATTTGCCATCATTGGGATCAACTTGTTTAGAGGCGTCATTGTGGCTCTTCCTGGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTG...GTTTCTGGATGCATATCGGCGCTACTCAGGCCC|GACTTGCTGTGCTCAGATCCTCCATTCAAGAGAGCTACAGACACGGGGGTGCTGGTGAGCAGGAGCCGAGACCATCTGGGGTGGGACCGACCAAGAGTTTGAGGTGTCCAGGGGGTGACGTGAAGATGACCTATTGCAGAGGGTCCCTTCTCATTCACGCTCTGAAGTCTG	out-of-frame	FLDAYRRYSGp|tccaqilhsrelqtrgcw*	.
TALL035	TMEM182	AC007251.2(69929),AC108051.1(1757)	+/+	./+	2:102798000	2:102965651	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	20	4	medium	.	.	duplicates(1)	GTCATCGCAAGCTTTTTGATCATCTGTGCAGCCCCCTTCGCCAGCCATTTTCTCTACAAAGCTGGGGGAGGCTCATATATTGCTGCAG|TAGCAGAGCACGAAGATAATGACGAACTAAGAGAATTCTGAATGAAGGTCTGAAATTTCAAGTTCTCAGCAACCTTTCCTGAGGTATGTCTTCCCCAAAGTTTGGTTGCTTTGACAGAGTCAGTGACACACACTTCTCTTCGATGACACTCCAG	out-of-frame	VIASFLIICAAPFASHFLYKAGGGSYIAA|vaehedndelref*	.
TALL035	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	17	0	111	31	low	.	.	duplicates(3)	CACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAG...CGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCACCTTCC	.	.	.
TALL035	FAM157B	FO082796.1	+/+	+/+	9:138252608	9:138289228	intron	intron	deletion/read-through	downstream	upstream	0	0	14	22	18	low	.	.	duplicates(5),mismappers(7)	CTCTGCCACCACGCCTGCCTAATTTTTGTATTTGTAGTAGAGTTGGGGTTTCACCATGTTGGCCAGGCTGGCCTTGAACTCCTGACTTCAGGAGATTCACCCGCCTCAGCCTCCCAAAGTGCTTGGGATTATGGGTGTGTCACTGCACTTGGATTTAATGGGATATTTCACTACAGACTTCGGTAAACAGAATATTAGCATTTTTGGTGTTCTTTTTATTTTACTCATACTGTTTTTCTTTGGACTCAATCACAATAACAGAATTAAAGATCAAAGTGTAAAAGTTA...|...TTATCTTTTTTTTGTTTGTTTTTGAGACAAATAATTGTACATATTCATGGGATACAGAGTGATATTTTGATACATGTATACAATGCCCAATGATCAAATAAGGATAATTAGCATATCCATCACCTCAAATATTTGTCATTTATTTGTATTGTGAACAGTCAACATTCTTTCTTCTAGTTTTTTAAATTTATAAACATTTAAATTTTATTACAGAAATTTAAATTTTTTGATTCTGAAAAAGTCATATATGTATGCAACATTTTTTATCATTTATTTATATATTTATGCATCTTTCCTTTTAGTTTTGACAGAG	.	.	.
TALL035	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	2	4	1	197	43	low	.	.	duplicates(3),low_entropy(1),mismappers(1)	GTTCTTGCTCTTCGAGGGCGAGAA___GATCACCATTAACAAGGACACCAAGGTACCCAAtGCCTGCTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGGGTAAGTTCTCCCTTCCCTCCCACACTGGTCTGCCCAGTCCCTGGCCTCCCTCCCACTCGGAGACCTCCCCTCTAGGCTCCGTCTGGTCTCCTGCTCAGGGAAAGCCATTTCTACTCTCCCCAGAAGCCGG...GTCGACCCCGACGAGGAGGTGCAGGG	in-frame	FLLFEGEKITINKDTKVPnACLFTINKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|TGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKgkfslpshtglpspwppshsetsplgsvwspaqgkpfllspea	.
TALL035	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	2	3	1	197	43	low	.	.	duplicates(3),low_entropy(1)	GTTCTTGCTCTTCGAGGGCGAGAA___GATCACCATTAACAAGGACACCAAGGTACCCAAtGCCTGCTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAG...GTCGACCCCGACGAGGAGGTGCAGGG	out-of-frame	FLLFEGEKITINKDTKVPnACLFTINKEDHTLGNIIKSRACFPFAFCrdcqfpeaspatlpvqpael|tgssdpycivkvdnepiirtatvwktlcpfwgeeyqvhlpptfhavafyvmdedalsrddvigkvcltrdtiashp	.
TALL035	ARAP2	RNU6-573P(374420),ARAP2(77798)	-/-	./-	4:35967823	4:35870423	splice-site	intergenic	deletion/read-through	upstream	downstream	0	2	3	7	8	low	.	.	duplicates(2)	CTTTGAGAATGTGAACAGCCACAAATTTAGAAGTTTCTTTTTTTGCTTTGCTATATACATGGACAATAATCCTGTACCTTGCCTGTGATCTTCCAG|ATTACTTACTAATGGATGTAATTCCTGACACTTAGCTGGAGAAAAATTGCTTTATTGGGCCAGATAAACTTGCCAG___GATTGAGGCCATCAAGCTACAGATGGTCGTACAAATGGAACCCCAAATGAGCGCAACTCACAACTTCTACTGAGGACCTCTGGACCGACTCACTGGC...AGTTAGAACAGTCATTGCCCAGTTCCCAACAGCATTTGGGGTGTCCTGTATAATGGGGGGATTGACAGGCGAAGCCAGCTGGACTTCCTGGGTTCAGTGGGGACTTGGAGAACTTTTCTGTCTTACAAGAGG	.	.	.
TALL035	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	4	1	0	18	20	low	.	.	duplicates(1)	GTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...ATTTTTGAGCGCCGTGGCTT?AACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCG...GCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAGGTGAGTGGGGCGGGG	.	.	.
TALL035	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	1	222	64	low	.	.	duplicates(3)	CTTGAAGTGTGTTACTAAGATACAAGAAACAGGTTTGCTTTTGCCTATTCCAGCATGGTGTACCTCTCTTAGGATACCTTTTAGCACAGGTAGCAGAATACCAGCCAGCCTCCTGTGGCTCACAGCATTA...CTGACATTACATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGA	.	.	.
TALL035	TMSB15B	TMSB15B(10272),H2BFWT(34163)	+/+	./+	X:103962723	X:103976984	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	1	11	136	low	.	.	duplicates(3),low_entropy(1)	GTCTGCTCTGAAGTCACCAAGCTCCTGATCTTAGAAGAGATGGTGGGCGCAGGCTCTGGAGGCTCAAGCGGAGGAGGGGAAGGAGGCGAGTCCGGAAACCCTCGGCCAATCAGAGAGGGCTGGGGCGGCGCCTGCTAGAAGGCTTAGCACTGCAGGGCTCTGGGCGGGAAGGCTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AAACCTTCCTTCCTTCCAGATGTGTGTCAGTAGAATTACAGAGTGTCCACGGAAACAGCTCATGCCCTAGTGTACAGTGGTGCAGCCAATGAGTGACCTGAAGTCTATGAGCAACACTCATTGTCCCAATGTGGGACGAGTGACCGAAGCTGAACCCACAACAGCCTTCCTGTGATATTCCACGTGGTGGTTAAAG...CCCTTGCCAAACCAAAGACACTTGGCAGAACCCTGTTCCTTTCTAGAGACAGAGCTGTATACCTGTTCCAAAACACCACATCTCACTCAGTGACTTATTTCTCATTATGCTAATTGTTTTGCTGTAAAGTGCC	.	.	.
TALL035	PTGER4(3028),TTC33(17712)	TTC33	./.	-/.	5:40696763	5:40740484	intergenic	intron	deletion/read-through	downstream	upstream	0	4	0	61	19	low	.	.	low_entropy(2)	.	.	.	.
TALL035	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	1	48	72	low	.	.	.	CTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCAT...TTTCTGTGGTATTTGCATACGTAGCAGATATAACCCAAGAGCATGAAAGAAGTATGGCTTATGGACTG___GTTTCAGCAACATTTGCTGCAAGTTTAGTCACCAGTCCTGCAATTGGAGCTTATCTTGGACGAG	out-of-frame	LGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL035	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	85	72	low	.	.	mismatches(1)	CCTTCTATACC...GGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTaCTCCTAGTGTCTATCAaGCAGTTATC	in-frame	GVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGtPSVYqAV	.
TALL035	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	91	203	low	.	.	duplicates(1),low_entropy(1)	CTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAG	out-of-frame	VEINENLPARKT*RKPRKLARERGKRIA*LPLRESR|er*	.
TALL035	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510890	7:22291074	exon	intron	deletion/read-through	upstream	downstream	0	0	4	3448	0	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	CCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTaCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTC...GCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCA...|...TGTGGCTGCTCAT	.	.	.
TALL035	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	3	0	0	41	168	low	.	.	duplicates(4),mismappers(2)	GGGAAAGTGTGGGACCTTTTCCCCGAGGCTGACAAAGTCCGCACCATGCTGGTTAG___GAAGATCCAGGAAGAGTCACTGAGGACCTACCTCTTCACCTACAGCAGTGTCTATGACTCCATCAG___CATGGAGACGC...TGGGCAGCCTGGTGGAGAACAACGAACGGGTGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAG	out-of-frame	GSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFL	.
TALL035	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	2	0	95	29	low	.	.	duplicates(1),mismappers(4)	AG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAG...AGGGTGAGTTTCCCAGCGCTGTTGGGGTCCTTGACCGGATGCGACCAGCATGGGGTACTTGTGGAGGTTTGCGGTGTAAGAAGGCTTCAGGGAATGGTCAGTGGAATCTGAAGCTGGGGGTTAGCCACTGAG	out-of-frame	GYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL035	TMEM182	TMEM182(15973),AC007251.2(13473)	+/+	./+	2:102798000	2:102859866	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	20	3	low	.	.	.	CTCGACCTCCTATGACTCTGCAGTTA___TTTACCGTGGTTTCTGGGCAGTCCTGATGCTCCTGGGGGTAGTTGCTGTAGTCATCGCAAGCTTTTTGATCATCTGTGCAGCCCCCTTCGCCAGCCATTTTCTCTACAAAGCTGGGGGAGGCTCATATATTGCTGCAG|TTTCTGTGGGTCAAGAGTGTGGAAGTGGCTAAGCAGAATGAGTCCAGCTCAGAATCCC	out-of-frame	STSYDSAVIYRGFWAVLMLLGVVAVVIASFLIICAAPFASHFLYKAGGGSYIAA|vsvgqecgsg*	.
TALL035	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	29	22	low	.	.	duplicates(1),low_entropy(1)	TGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAG...AGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGC	out-of-frame	GAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsg	.
TALL035	CD55	RP11-357P18.2	+/+	+/+	1:207339417	1:207372769	splice-site	exon	deletion/read-through	downstream	upstream	1	0	2	264	46	low	.	.	duplicates(1)	G___GAAAATCTCTAACTTCCAAGGTCCCACCAACAGTTCAGAAACCTACCACAGTAAATGTTCCAACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAAAAACCACCACACCAAATGCTCAAG___CAACAC...GACAACCAAGCATTTTCATGAAACAACCCCAAATAAAGGAAGTGGAACCACTTCAG___cTACTACCCGTCTTCTATCTG|AATTATAACTGGACATCTTTTGCCAGGTGACTTTTCAGTGCCTTCCACTATAGTAGATGGAATATACTTCCCCACTCCATTGAGTCCATTTTTTGTTGGCTAACCTGTAGTTTTAAGATTGTAATTTTTTTAAATCTAGTTACCTTGATTGCTTTTTAGAGAGCTATTAGTCCCAATAACTTAGACCACCATTATTTAAAAATGGAATTCCTAACCAC	out-of-frame	TTKHFHETTPNKGSGTTSaTTRLLS|el*	.
TALL035	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	0	1	197	43	low	.	.	mismappers(1)	AGGACACCAAGGTACCCAAtGCCTGtTTATTCACCATgAACAAAGAAGACCACACACTGGGAAACATCATTAAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAG	out-of-frame	DTKVPnACLFTmNKEDHTLGNIIKsracfpfafcrdcqfpeaspatlpvqpael|tgssdpyciv	.
TALL035	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	0	0	149	117	low	.	.	duplicates(4),mismappers(2),mismatches(2)	AAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTG...CAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGC...CATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGAAACTAGCCTGGCCAACGTGGCAAAAC	.	.	.
TALL035	LINC00954	RP4-765H13.1(73891),RP4-809F18.2(58829)	+/+	./+	2:19877098	12:126299205	exon	intergenic	translocation	downstream	upstream	0	2	0	5	5	low	.	.	.	CTTCCCCATCCCTGGCTTTCCTGCTGACTTCCCACGAGATAAGACTTTTCTTTAAAAAGGGGGCCTTCTC|CCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAG	.	.	.
TALL035	BYSL(136),CCND3(1751)	MED20	./-	-/-	6:41933182	6:41907287	intergenic	splice-site	deletion/read-through	upstream	downstream	0	1	1	82	12	low	.	.	.	CAAgGTGCTGGGATTACAGGCGTGAGCCACCAAGCCCAGCCTCTCTGGCCTTTCTTGACTCTTATCTCTGCTTTCCCCAAGGAGTTTTCTCTTGTAGTCCTTTCATCC...CTTTGGACAACCTGCTCCTGGCTGCTGTAGCCTGTGATGGGGGAAGGCAGAGGATGTGTCCCCTGGGGGCTAACAAG|GTGGAGTATGGCCCCTGTGTGGTAGCTAGTGACTGCTGGAGTCTGCTGCTCGAGTTCCTACAGAGTTTTCTAGGCAGCCACACACCAGGGGCTCCCGCAGTGTTTGGGAACAGACATGATGCGGTCTACGGCCCAGCAGATACCATGGTCCAGTACATGGAACTCTTCAACAAGATCCG	.	.	.
TALL035	ETV6	CAMK2D	+/+	-/-	12:11752579	4:113661772	splice-site	splice-site	translocation	downstream	downstream	1	1	0	67	5	low	.	.	.	GGAAAGGAAAGTGGAAAAAACCTGAGAACTTCCTGATCTCTCTCGCTGTGAGACATGTCTGAGACTCCTGCTCAGTGTAGCATTAAG___CAGGAACGAATTTCATATACACCTCCAGAGAGCCCAGTGCCGAGTTACGCTTCCTCGACGCCACTTCATGTTCCAGTGCCTCGAGCGCTCAGGATGGAGGAAGACTCGATCCGCCTGCCTGCGCACCTGC|ATCATCAGAAACTAGAAAGAGAAGCTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTG___TGCGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTT___AGTTACTGGAGGTGAACTGTTTGAAGACATAGTGGC	in-frame	MSETPAQCSIKQERISYTPPESPVPSYASSTPLHVPVPRALRMEEDSIRLPAHL|hHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIV	.
TALL035	POLR2B	ARPC3	+/+	-/-	4:57007002	12:110435217	splice-site	splice-site	translocation	downstream	downstream	0	1	0	120	4932	low	.	.	duplicates(1)	CTCTTTAGCTACTGGAAACTGGGGTGATCAAAAGAAAGCTCATCAAGCCAGAGCTGGAGTATCTCAG|TGGTGGACTTGCTTTGTGAAGAGACAGTTCATGAACAAGAGTCTTTCAGGACCTGGACAGTGAAGG...GTCTTTACTTGAAAAACTCTTGATCAAGAATTTGGGTGGGAGAAAAGAAAGTGGGTTATCAAGGGTGATTTGAAATTTTCTGCAGCATTAAAGCTGGCGCTTAATAAGAATAAGTAATAATAAAGAAATTTC	in-frame	SLATGNWGDQKKAHQARAGVSQ|WWTCFVKRQFMNKSLSGPGQ*	.
TALL035	USP4	RHOA	-/-	-/-	3:49339924	3:49360382	splice-site	splice-site	duplication	upstream	downstream	0	1	0	54	2392	low	.	.	duplicates(1)	CTCAGAAGTCCGAGCTTGGACCCTTAATGAGGACCACACTCCAACGCGGGGCGCAGTG|GAGCCGGTGAAACCTGAAGAAGGCAGAGATATGGCAAACAGGATTGGCGCTTTTGGGTACATGGAGTGTTCAGCAAAGACCAAAGATGGAGTGAGAGAGGTTTTTGAAATGGCTACGAGAGCTGCTtTGCAAGCTAGACGTGGGAAGAAAAAATCTG	out-of-frame	QKSELGPLMRTTLQRGAQw|sr*	.
TALL036	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	21	6	11	402	251	high	.	.	duplicates(32),low_entropy(5),mismappers(11),mismatches(6)	TCgATTCCAGCTTCCTTTTTAgCgTgGGCAgAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___AAGGAATAATAGCAGGTGACTTGTAGGTGCC...CGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCCTGCCCTTTACATTTTAACTCCCTTCAACCCTATTAGAAAATTAGCTATTAAGATTTTGGTACATTC___TTTATTCAATATGCTCATTATGTGCACGATTCTTACCAACTGTGTATTTATGACCATGAGTAACCCTCCAGACTGGACAAAGAATGTGG	.	.	.
TALL036	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	5	9	17	104	251	high	.	.	duplicates(25),mismappers(17),mismatches(3)	CTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___GTCACTTTTATTTTTTAGAGGGGCA	.	.	.
TALL036	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	12	3	1	149	251	high	.	.	duplicates(70),low_entropy(7),mismappers(54),mismatches(4)	CGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___...CAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___...AGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___GTCACTTTTATTTTTTAGAGGGGCAAAATGATGCTCTGCTTTGTGGCAACAGCTCAGATGCAGG___CCAGTGTCCTGAAGGATACATCTGTGTGAAGGCTGGTAGAAACCtCAACTATGGCTACACGAGCTTTGAC	.	.	.
TALL036	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	4	5	14	159	251	medium	.	.	duplicates(11),mismappers(14),mismatches(6)	GAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAAC...ACTTTTGAATCACTTATTAAAATACTTGCAAGGGGCTTTTGTTTAGAAGATTTCACATTTTTACGGGATCCATGGAATTGGTTGGATTTCACAGTCATTACTTTTGC___GTATGTAACAGAATTTGTAAACCcAG	.	.	.
TALL036	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	13	3	56	91	high	.	.	duplicates(14),mismatches(1)	CG___...G...___...?GGGGGGG?AA???CTGATTTTTTTTTTT...___...CATTTTT...___...GCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCGAGGACTACCTGAGAAGCTTCCG	.	.	.
TALL036	MON1B	CTD-2300H10.2(65533),MON1B(20005)	+/+	./+	16:77191633	16:77170830	splice-site	intergenic	duplication	downstream	upstream	2	8	8	155	35	high	.	.	duplicates(12)	CTTCTGGGAGGGGTCGTACCCGGAAGTGTGGCACCTCCCGGGCCGCACCCGGAAGTGTGATGCCACCGCCGCTACGGGGAAGTAATGGTATCCGGCCAATTGAGATTCGGAGTTAAAACAG___GGATGTGCAGATGGAGGTCGGAGGAGACACTGCTGCCCCGGCCCCCGGGGGCGCGGAGGACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGAAGGTGGAGGGGTTCACGCGGTCCCGCCGGATCCCGAAGACGAGGGCCTGGAGGAAACAG|GGATGCTGAGCTGCTGCAGGAAGCTCTTGAACATCAAGTTATGCCAGCAGAAAAAGACATCAGATTGGAAGAATGTGGGTGATGTTTTGCCTGTGGAGGGGGTGGAGGATAGCCTTGGATCCCTTGAAGCCCC...___GCAGATGAGCTGGTC...___CAATTTTCAAGTTTGCCATACTTCT...___...CACTGGCTTCCTGCCACCATCCTTCAGTCTAAAACTGTATCATGCTGTTCCTGGCATTCTTTGATCAGGGCCTATGAGAGAAATTTATTTCCTGCTTCCTGGGCATTCAGATTCCCAGCAGCTGCAACAACCTGAACTTCCTTTGGAaAATTACTCCTTATGATGACTTGAGTGATCTTGGC...___GGAAACAGATCTGGAGACCTGTGAAGACAAAGT...CCCGTCATGTGAGGGTGTCATACACATGCTAGGTGTCATACAACACCTAGCATGATGAATGCTGCAATTTACACCaTCTAAGTTTTTGGTGGCCAGATGAGATTTATCCAAAAGAATACTGAGATAATTGTGG	out-of-frame	MEVGGDTAAPAPGGAEDLEDTQFPSEEAREGGGVHAVPPDPEDEGLEET|gmlsccrkllniklcqqkktsdwknvgdvlpvegvedslgslea	.
TALL036	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	5	10	2	62	25	medium	.	.	duplicates(10),mismatches(3)	CCTCCCAGTGCCAAGTGTATAAGCGTGTCCAGAATTGGTGGGTCTCACTGACTTCAAGAATGAAGCCGCGGACCCTCCTG___GCGGAATTCTCCACGAGTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAAT...GCAGAGGGCGCCAGAGAGCCAGGAGCGGCCCGCcGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCcGCTCCGCCGAGAGGCCGCTTGCGCCG...CCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CC...___...GACATTTTCGC...___...CGGTGTCTGCTTTCAC...___ATTTTCTTCAATCACATCTGAATAAATCAC...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAG	.	.	.
TALL036	CD1B	CD1C(1408),CD1B(32913)	-/-	./-	1:158329852	1:158295038	splice-site	intergenic	deletion/read-through	upstream	downstream	1	8	1	2334	24	medium	.	.	duplicates(10),low_entropy(2)	CTGGAGGTGCCATAGTAAGCTTCCTGAGGGGAGCTCTAGGAGGATTGGATTTCCTGAGTGTCAAGAATGCTTCATGTGTGCCTTCCCCAGAAGGTGGCAGCAGGGCACAGAAATTCTGTGCACTAATCATACAATATCAAGGTATCATGGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|GTCACAGGGTGACTAAGGGTGCAGGAGAGTCACCTAGGGCCTCCTGGTGCCAAGGAAATGAGCAATGGAAGCAGGACCCAAGCTGG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCTGGGCAATGGAATGTGTGGTGTTGGAAGCATTAGCCAGCTCCAGTCCTGACCACTGAAAATATCACATCTGATCATCTTACCCTGTGGTACCAACTTGGCAGTCAAATTTCTAAATGGCAAGACTATGAGATGGAGAAGAGCA	out-of-frame	GGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQRQ|ghrvtkgagespraswcqgneqwkqdpswercncpis*	.
TALL036	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	5	1	3	132	443	medium	.	.	duplicates(6),mismatches(1)	ATTGGAGTTAAATTAGGTGTTGAAAG___TAGGTCGGAAACAGCAGAAAAAGCATTACATAAAAG___TGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGC...CTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCAC	out-of-frame	LVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL036	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	1	222	443	low	.	.	duplicates(3)	GAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAG	in-frame	KILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQ	.
TALL036	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	2	0	422	56	medium	.	.	duplicates(2)	CTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCC	.	.	.
TALL036	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	7	0	47	19	low	.	.	duplicates(5)	GCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAG...CAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGC	.	.	.
TALL036	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	5	2	278	796	low	.	.	duplicates(10)	CTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACC...GGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCCATGCCAGGGCCAAGACTGGGACCAGGAAAG___CCAGGTCTAAAATTCAATGGCCCACCACCGCCACCGCCACCACCACCACCCCACTTACTATCATGCTGGCTGCCTCCATTTCCTTCTGGACCACCA___ATAATTCCCCC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL036	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	61	796	low	.	.	read_through(2)	CGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC...GAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTG...TCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGG	out-of-frame	SSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL036	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510582	7:22335300	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	8	4343	4	low	.	.	duplicates(6),low_entropy(2),mismappers(2),mismatches(27)	CACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGG...TCAAAGCAGTGGACAAGAAGGCTGCTGcAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAAaATTATCCCTAATACCTtCCACCCCACTC...|...TTTGTCAGAGT	.	.	.
TALL036	GFRA4	ATRN	-/-	+/-	20:3663354	20:3647187	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	1	5	0	80	57	low	.	.	duplicates(5),low_entropy(4)	GGGGTATCAGCGCAGACAGCTGGGTTTTCACTGTGCTCCTGCTCCAGAGGCACTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|TTGAGACAGTCCCAAGAACAGTTTTCCACAGTGAACCTGAGTGTCATTCCTAGTTCTCTCACTGGCTCTACACTGGCCTCCTCCAGCAACCATCAGCTCATCCCTGGACCTGTAATTAAATCAAGTATTTCCTATGCAAAAGTAAAAGGTTAGATGCTGGAACACGGATGGGAGAAACCGTCAAAGAAAGCTTGTGATCATGCAG___GGACACGGATGAAGCTGGAAGCCATCAGTCTCAGCAAACCAACACAGGAACAGAAAACCAAATACTCCATGTCCTCACTCTTAAGTGGGAGTTGAACCATGAGAACACA	out-of-frame	MVRCLGPALLLLLLL|vetvprtvfhsepechs*	.
TALL036	AL589822.1(34769),AGAP7P(11086)	AC244230.1	./+	+/+	10:46098535	10:46337259	intergenic	CDS	deletion/read-through	downstream	upstream	0	3	2	69	25	low	.	.	duplicates(6),low_entropy(1)	AAAGCAGCACTCACTTGTCTGAGGTGAGCCGGCAAGACGGTGTTGCTGTCCGTGGAGTAGGTGACGAAGGACATCCGCTTATTTGGGCTGAGACAGAATCAAGTACTGGTGAAAAGCCGGAGGCACCAGCTCAGAAGCCAGG|CGTCAGCCTCGAGTTTGACCAGCAGCAGGGGTCGGTGTGTCCCTCTGAATCTG...CGCCCATGGCTGCTGCTGT?CAGCCTGCTGAGGTGACTGTTGAAGTTGGTGAGGACCTCCACATGCACCACGTTCGTGACCGGGAGATGCCTGAAG___CTTTGGAGTTTAACCTTTCTGCCAATCCAGAGGCAAGCACAATATTACAGAGGAACTCTCAAACAGATG___CTTTGGAGTTTAACCCTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACTCTCAAACAGATG___TTGTAGAAATAAGAAGAAGCAAC	.	.	.
TALL036	EEF1A1P6	DNAH11	-/-	+/-	7:22511107	7:21883115	exon	intron	deletion/5'-5'	upstream	downstream	0	0	5	11037	0	low	.	.	duplicates(9),low_entropy(1),mismappers(1),mismatches(16)	CTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCT...|...CCTCAAATATG	.	.	.
TALL036	EEF1A1P13	TRIO	-/-	+/-	5:14652228	5:14519418	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	5	54	2	low	.	.	duplicates(7),low_entropy(2),mismatches(17)	GTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCCACACGGCTC...|...GCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCtgTCTCTACTAAAAATACAAAAA	.	.	.
TALL036	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	2	2	40	15	low	.	.	duplicates(2),mismatches(1)	GTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAG...GGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___TATGACAGACTTAACCTGATCAAA___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAG...GCTGACAGTCCGT	.	.	.
TALL036	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	2	0	42	9	low	.	.	duplicates(6),mismappers(1)	AGAaGGCCCTTTGGACATGAGAATGGATGGTGGCAG___GTACCCTGACATGCCCACTGCTGCTGATGTTGTGAATGCTTTAGATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCC...TGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GCTGCgCATGTTCTTCGGAAAAAGATCTAAAAGCATCACCTTTTGCTTTGTCTGCTGGTGCTTA[agc]AG___TTTGAATATGTCATCCC	out-of-frame	CSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL036	EEF1A1P9	INTS12	+/+	-/+	4:105486066	4:105730999	exon	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	53	4	low	.	.	duplicates(1),low_entropy(1)	AAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCaTGTgTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCgTGATAT...AGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTC...|...ATTTCTTGTTTTTGTCAGGTTTGTCAAAGATCAGATGGTTGTAGATGTGTGGTATTATTTCTGAGGGCTCT	.	.	.
TALL036	CHFR	ANKLE2	-/-	-/-	12:132887196	12:132755133	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	1	305	395	low	.	.	duplicates(3),mismatches(1)	GCAGTCGCCGCCGCCGCAGCCCTGGGGACGGCTCCTGCGTCTGGGCGCGGAGGAGGGCGAGCCGCACGTCCTCCTGAGGAAGCGGGAGTGGACCATCGGGCGGAGACGAG|GTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGGATTGAAATGTGGACCCATTACATCAACTACAAGGTTCATTTTTGAGAAAAAATTGGCTCAGGCTTTACTGGAGCAAGGAGGAAGGCTGTCTTCTTTCTACCACCATGAGGCAGGTGTCACAGCTCTCAGCCAGGACCCACAAAGGATTTTGAAGCCAGCTGAAGGGAACCCAACTGATCAGGC	in-frame	QSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRR|gEMTMDALLARLKLLNPDDLREEIVKAGLKCGPITSTTRFIFEKKLAQALLEQGGRLSSFYHHEAGVTALSQDPQRILKPAEGNPTDQ	.
TALL036	NUP160	RPH3AL(18004),AC108004.3(210)	-/-	./-	11:47797833	17:404258	CDS	intergenic	translocation	upstream	downstream	0	0	3	241	21	low	.	.	.	GGCAGTTGGTGGTAGTTCTTTGTGAACGCTCACAGCTACAGGATCTTGTAGAGTTTCCCTATGTGAATCTGCATAATGAG___GTTGTGGGAATAATTGAGTCACGTGCTAGAGCTGTGGACCTTATGACTtACA...|...CCATCGAGCGTCACCAGTGTCCcTCCGAGCCATCGAGCGTCACCACTGTCCTTCCGAGCCATCGAGCGTCACCACTGTCCTTCCGAGCCATCGAGCGTCACCAGTGTCCTTCCGAGCCATCGAGC	.	.	.
TALL036	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	92	200	low	.	.	duplicates(2),mismatches(2)	GGAAGGAAGACCACCTTCCCGGGGCTGGGCAAGGCTGCGGTACTGTCTCTCATCAGGTCCAGGAGGACTCAGCAGGCTGATGCAGAGGGACACAGCGCATCCGCCTTGGTGGATGCATGGCTTTCCTGGCTC...GGCCCATTTGACTGCAGGAATTGCTCAAGCACATAAGCACCTTGAAGTGTGTTACTAAGATACAAGAAACAGGTTTGCTTTTGCCTATTCCAGCATGGTGTACCTCTCTTAGGATACCTTTTAGCACAGGT...CCAGCCTCCTGTGGCTCACAGCATTAAGATATTTAATCATCTGACATTACATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATtAAAGctccAaTttCACcCtCtAGCCTtCTGACCTCAGCCCTGcCGcGtGtAaAGGAGGcTCTGCGTGGCTGAGCATCCcGTGTC...AGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCC	.	.	.
TALL036	PTPN22	RSBN1	-/-	-/-	1:113825142	1:113798036	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	2	142	204	low	.	.	duplicates(3)	GAAAAAGTTTCACAAGGAGTAAG___AGTTTGAAAATTTTGCGAAACATGAAAAAGA|AAACACCAGATGAAAATGGTAAAACCCAGAGAGCCGATGATTTTGTCTTGAAGAAAATAAAGAAGAAAAAGAAAAAGAAACACCGAGAAGACATGCGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGACCCGCATCAGTAAAGAAATTCTCACCCAAGGACAAATAAAT...CGATTAAATTTGGGTATGCAAGAATATCGGGTACCCCAGGGAGTACAAACACCTTTTATGACTCACCAGGAACATTCTATTCGTAGAAATTTCTTAAAAACAGGTACTAAATTTAGCAACTTTATTCAcGAGG	in-frame	KSFTRSKSLKILRNMKK|kTPDENGKTQRADDFVLKKIKKKKKKKHREDMRGRRLKMYNKEVQTVCAGLTRISKEILTQGQI	.
TALL036	PTPN22	RSBN1	-/-	-/-	1:113819577	1:113798036	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	199	204	low	.	.	duplicates(2),read_through(4)	AG___AGTTTGAAAATTTTGCGAAACATGAAAAAGA___GTATCTGTAATTCTTGCCCACCAAACAAGCCTGCAGAATCTGTTCAGTCAAATAACTCCAGCTCATTTCTGAATTTTG|AAACACCAGATGAAAATGGTAAAACCCAGAGAGCCGATGATTTTGTCTTGAAGAAAATAAAGAAGAAAAAGAAAAAGAAACACCGAGAAGACATGCGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGACCCGCATCAGTAAAGAAATTCTCACCCAAGGACAAATAAATAGCACTTCAG	in-frame	SLKILRNMKKSICNSCPPNKPAESVQSNNSSSFLNF|eTPDENGKTQRADDFVLKKIKKKKKKKHREDMRGRRLKMYNKEVQTVCAGLTRISKEILTQGQINSTS	.
TALL036	TRMT1	CABIN1	-/-	+/+	19:13116308	22:24070291	CDS	intron	translocation	upstream	upstream	0	0	3	268	2	low	.	.	.	GCCAACATGGCGGCGCCCAGGTCCTAATTCGGGAAACGTGCACCTTGACTAATTCGGTTTTCTGTGGCTACGAGAGCAG___GCTTGGCGGGCGGAGGCGCCAGCGGATGTCTCATGCAAGGATCGTCTCTGTGGCTAAGCCTCACTTTCCGCTCCGCCCGGGTGCTCTCTAGAGCCCGGTTTTTCGAGTGGCAGTCTCCAGGGCT...|...GGGGAGGAGGAGGCTGATAGAGTGATGACTTTAGTGTTGCCTGGCCAGTTGCCCCTGTTGTGGCCTTGGCTCAGGCCCTCCTCCGCTGAGGTAGTCCCTCCCTGGCAGTCTGCCCCTTTGCTGCTGAACCC	.	.	.
TALL036	PLIN3	CROCC	-/-	+/+	19:4844712	1:16972408	CDS	CDS	translocation	upstream	upstream	0	0	3	271	139	low	.	.	duplicates(1)	GCAGAGGGCACAGGAGGCTCTGCTGCAGCTGTCGCAGGcCCTAAGCCTG___ATGGAAACTGTCAAGCAAGGCGTTGATCAGAAGCTGGTGGAAGGCCAGGAGAAGCTGCACCAGATGTGGCTCAGCTGGAACC...|...GCcCCCTTC?CCCCACCCTCCGGCCCCCCAGAGAAATGAGCTCCTGCTGGCATCTGGAGAACACCCCTGTGCCTGGGACAGGGGAGGACCCTTCTTTTGGACAGCCCCCCCcCCCAGAGCCC	.	.	.
TALL036	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	132	88	low	.	.	duplicates(2)	GGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTT...CGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCG	out-of-frame	RLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
TALL036	C6orf183	C6orf183(11626),CCDC162P(2845)	+/+	./+	6:109270177	6:109282640	exon	intergenic	deletion/read-through	downstream	upstream	0	0	2	5	3	low	.	.	duplicates(1),mismappers(1)	CTGGAGGACAGTGGTCGGGTAGACAG___ATATTCTCCTACTGCTCTTGTCTTAGCCATCTCTGAGGTGGATGATgACCAAATTGGCAAATTTAGTTTTTACACAAAGGAAGCCATTCTTAAG___CTTTTGCTGCATT...GGAGTGGAAAATATGCAGGTGACTCTTGCATGCCAAGCTGCTCAGAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGCACCCCTCAAGGGAGCTGTCCTGCTAATGTCAAGG...|...GCATAGACAGCTCGCTGATAGCCCCAACTCCAAAAGTCCCAGATACACTTACTCATTCTCCAGAAAGATTTCAGGCTACCAAAAGG	.	.	.
TALL036	RP11-764K9.1	LINC01410(4938),RP11-262H14.5(19324)	-/-	./-	9:63809332	9:62818424	intron	intergenic	deletion	upstream	downstream	0	0	2	1	20	low	.	.	duplicates(2)	GGGAAGAAGCTTAtTTCACTATGGTGAATTAGCCTTTTGATGTGTTGCTAGATTCAGTTTGCAAGTATTcTGTTGTGGATcATTGAATGGATGTTCATCAAGGATACTGGCCTGAAGTTTTCTTTTTTTGTT...|...TGCAGGGACATGCAGGAAGCTGGAAACCATCATTCTCAGCAAACTATCgCAAAGACAAAAAACCAAACACCCGCATGTTCTCACTTATAGGTGGGAATTGAACAATGAGAACACGTGGACACAGGAAGGGGAACATCACACACCAG	.	.	.
TALL036	ALDH3B2	MBD5	-/-	+/+	11:67666618	2:148028356	CDS	intron	translocation	upstream	upstream	2	0	0	14	5	low	.	.	duplicates(2)	GGGGGATCCCCTCCCTGGAGTgGGGGAGGTCAAGCCCAGGGCCCTCCCTCATGGGCACACCTGGGAGGCAG___GATGGACCCCTTCGAGGACACGCTGCGGCGGCTGCGTGAGGCCTTCAACTGAGGGCGCACGCG...GGTCCTCATCATCGCACCCTGGAACTACCC|GTGCTAATGTTAAAACTTAAGTTCATGTGTAGCTTTTAAAAAAAAAATTTAATATCTGTATCTCAGAAGTTAGAAGTAATCCCAAAGTGTTTTTTAAGATTG	out-of-frame	VLIIAPWNYp|c*	.
TALL036	GIMAP2	GIMAP6	+/-	-/-	7:150661695	7:150630142	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	1	0	1	20	208	low	.	.	duplicates(2),mismappers(1)	ACACACACACAAAGAACCTATGGAAATGTGAGAGAAGGAAGAGAAGACTGAATGGTAGGAGAAGGAGTATTTCAAAGAGATCTGAAAGATTTGTGCATAAGGGAAAAGCCTGGATGCAT...AAGATCTGAAAACTGAATTCACAGAGGCCTACACACATCCTTAAAATCTTACCATCAG|ATGGAGGAAGAAGAATATGAACAAATTCCCCAGGAGAATCCCCCAGAAGAGCTGTCCCAGGATCCTGTGCTGGAGCTGTCAGGAG___GTCTCGCCAGAGGTGGCAGACGCTATCTGCCAAGCCATCGTCTTATCCGCC	.	.	.
TALL036	RGCC(92879),VWA8(3076)	RP11-178C3.2	./-	+/-	13:41563761	17:59996233	intergenic	exon	translocation	upstream	downstream	0	2	0	19	53	low	.	.	duplicates(1)	TGTGTGTGTgTGTGTGTGTAACTGTTAAATCCTGTAAACAAAATTTCC|ACCTCGGCTGAACCATTTTACATTCCCACCAACAACATACGAGGGTTCCAATTTCTTGACTTTCAAGTTTTAC...TATTTTCCAGAAACTTAACTTGCTTTGATTCTTCTTAGATATGTGGTAGATGGTGGCTTTGTGAAGCAGTTAAATCACAACCCCAGATTAGGGTTGGACATCCTGGAGGTGGTTCCAATTTCAAA___GTTTCCC	.	.	.
TALL036	CD68	BAG4(2844),DDHD2(9073)	+/+	./-	17:7580723	8:38216145	CDS	intergenic	translocation	downstream	downstream	0	0	2	102	21	low	.	.	.	CATCTCTGTACTGAACCCCAACAAAACCAAGGTCCAGGGAAGCTGTGAGGGTGCCCATCCCCACCTGCTTCTCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG___GACCTCCAGCAGA...|...AAAACATTAAAAAAAAAACAAACAAACAGAAAACATAAGAAAATTAAAGAACCAGTCTATGAGGCCTACAGTCAAAACAGTAGTAATTCTAGAAAGTATTAACAGAGAAGACTGGGATGGAGGAAAGAGGGAAA	.	.	.
TALL036	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23232293	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	111	13	low	.	.	.	AACAAAGGAGATTGTGACATATTGCTGGGCCTAACACTAAGGTGATGTTAGTTATTTGCTTTGGCTGTGCCCTTGGAAGGCATTGAGACATACTGCTGTGCCCAGCACCAAGATGAT___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTGTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGAACGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGG___GTATTGCTGTCTCTAAGCCAGACCTGAT...AGCAAGGCAAAGAGCCCTGGAATATGGAGAGACATGAGATGGTGGCCAAACCCCCAG___GTATGTGTTGTTATTTTGCCCAAGACCTTCGGCCAGAGCAGAGCATAAAAGCTTCTTTGCAAAGAATAATACTGAG	.	.	.
TALL036	METAP1	RAP1GDS1	+/+	+/+	4:98995867	4:98293408	splice-site	splice-site	duplication	downstream	upstream	0	1	1	189	232	low	.	.	duplicates(3)	GTTCCTCCCTCCCGCCGCCGCCTCTTCCTCGGTGAGGCGCTCTTCCAGCGGGCAGGCAGCATGGCGGCCGTGGAGACGCGGGTGTGCGAGACAGACGGCTGCAGCAGTGAGGCCAAGCTCCAGTGTCCCACTTGCATCAAGCTGGGCATCCAGGGCTCGTACTTCTGCTCGCAG|ATAATCTCAGTGATACCTTGAAGAAGCTGAAGATAACAGCTGTTGACAAGACTGAGGATAGTTTAGAAGGATGCTTGGATTGTCTGCTTCAAGCCCTGGCTCAAAATA___ATACGGAAACAAGTGAAAAAATCCAAG	out-of-frame	MAAVETRVCETDGCSSEAKLQCPTCIKLGIQGSYFCSQ|iisvip*	.
TALL036	NOC4L	CDK2AP1	+/+	-/-	12:132145665	12:123267282	splice-site	splice-site	inversion	downstream	downstream	1	1	0	114	572	low	.	.	duplicates(2)	GGGGGCGGCATGGAGCGGGAGCCGGGCGCCGCGGGAGTTCGCCGGGCTCTGGGCCGCCGGCTGGAGGCGGTGCTGGCGAGCCGCAGTGAGGCCAACGCCGTGTTCGACATCCTGGCCGTGCTGCAG___TCTGAGG...GGATGAGACACCGCTATCACAGCTGCTGCAATCGCTTGGGAGAGCTCCTGGGCCACCCCTCCTTTCAGGTCAAG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGACTACGGG...GGAATGCCAGATCCTAGCTGCCTTGTTGGTTTTGAAGGATTTCCATCTTTTTACAAGATGAGAAGTTACAGTTCATCTCCCCTGTTCAGATGAAACCCTTGTTTTCAAAATGGTTACAGTTTCGTTTTTCC	out-of-frame	MRHRYHSCCNRLGELLGHPSFQVK|lgvstrlppawqrlhstascsvtt	.
TALL036	CSNK1D	FOXK2	-/-	+/+	17:82273306	17:82601303	splice-site	splice-site	inversion	upstream	upstream	0	2	0	309	411	low	.	.	duplicates(3)	TGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGCTCCTTCGGAGACATCTATCTCG|CCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAAGCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAAGACGGCGAGGGCATCGTCATTGCCCTGAGCGTGGACACGCCACCGGCAG	in-frame	RVGNRYRLGRKIGSGSFGDIYL|aAASPLHMLATHASASASLPTKRHNGDQPEQPELKRIKTEDGEGIVIALSVDTPPA	.
TALL036	TCF25	FUS	+/+	+/+	16:89892275	16:31189123	splice-site	splice-site	duplication	downstream	upstream	0	1	1	365	2646	low	.	.	duplicates(1)	GTGTACCCCAAGTGCACATGGCTGACCACCCCTAAAAGCACCTGGCCCCGCTACAGCAAACCAG|AACAGGATAATTCAGACAACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACAATTGAGTCTGTGGCTGATTACTTCAAGCAGATTGGTATTATTAAG___ACAAACAAGAAAACGGGACAGCCCATGATTAATTTGTACACAGAC	in-frame	VYPKCTWLTTPKSTWPRYSKP|eQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT	.
TALL036	EZH2	ZNF777	-/-	-/-	7:148884164	7:149456037	splice-site	splice-site	duplication	upstream	downstream	0	1	1	224	60	low	.	.	.	GCGCTCGGTCCGGTCGCGTCCGACACCCGGTGGGACTCAGAAGGCAGTGGAGCCCCGGCGGCGGCGGCGGCGGCGCGCGGGGGCGACGCGCGGGAACAACGCGAGTCGGCGCGCGGGACGAAG|GTTCAGCAGCTGGACATGGAGAACCA...GAAATTCCTTCTTTGTCTCCCACCATTCCCCGTCAAGGCTCCCTGCCCCAAACTTCCAGTGCTCCCAAGCAAGAGACTTCTGGCtGGATGCCACATGTGCTCCAGAAGGGACCCTCACTCCTGTGTTCTGCCG...ATCCACCCCCAGCTGCTGCTGAACAAGAAGcCTCCCTTCTCTCCCACTCCCCCCACCACCAGGAAGCCCCCGTTCACTCCCCTGAAGCTCCTGAGAAAGACCCCCTGACCCTTTCCCCAACAGTTCCCGAG	.	.	.
TALL036	RPTOR	NME1-NME2	+/+	+/+	17:80893865	17:51166827	splice-site	splice-site	duplication	downstream	upstream	0	1	1	153	7928	low	.	.	duplicates(2)	AGCATATCCTGTCCTTCGAGACCATCGACAAGATGCGCCGCGCCAGCTCCTACTCCTCCCTCAACTCCCTCATCG|GACCATGGCCAACCTGGAGCGCACCTTCATCGCCATCAAGCCGGACGGCGTGCAGCGCGGCCTGGTGGGCGAGATCATCAAGCGCTTCGAGCAGAAGGGATTCCGCCTCGTGGCCATGAAGTTCCTCCGG___GCCTCTGAAGAACACCTGAAGCAGCACTACATTGACCTGAAAGACC	out-of-frame	HILSFETIDKMRRASSYSSLNSLI|gpwptwsapsspssrtacsaawwarsssassrrdsaswp*	.
TALL036	RPTOR	NME2	+/+	+/+	17:80893865	17:51166827	splice-site	splice-site	duplication	downstream	upstream	0	1	1	153	7928	low	.	.	duplicates(2)	AGCATATCCTGTCCTTCGAGACCATCGACAAGATGCGCCGCGCCAGCTCCTACTCCTCCCTCAACTCCCTCATCG|GACCATGGCCAACCTGGAGCGCACCTTCATCGCCATCAAGCCGGACGGCGTGCAGCGCGGCCTGGTGGGCGAGATCATCAAGCGCTTCGAGCAGAAGGGATTCCGCCTCGTGGCCATGAAGTTCCTCCGG___GCCTCTGAAGAACACCTGAAGCAGCACTACATTGACCTGAAAGACC	out-of-frame	HILSFETIDKMRRASSYSSLNSLI|gpwptwsapsspssrtacsaawwarsssassrrdsaswp*	.
TALL036	HNRNPLL	SRSF7	-/-	-/-	2:38602438	2:38750194	splice-site	splice-site	duplication	upstream	downstream	0	1	1	347	2445	low	.	.	duplicates(1)	CCGGGAAGCGACGCCCCGGGGCGGGGGCGATGGCGGCGGCGGCGGCCGGAGCTTCTCTCAGCCG|AAACCAAGGTGTATGTTGGTAACCTGGGAACTGGCGCTGGCAAAGGAGAGTTAGAAAGGGCTTTCAGTT...GTATGGATTGCGAGAAATCCTCCAGGATTTGCCTTTGTGGAATTCGAAGATCCTAGAGATGCAGAAGATGCAGTACGAGGACTGGATGGAAA___GGTGATTTGTGGCTCCCGAGTGAGGGTTGAACTATCGAC	out-of-frame	REATPRGGGDGGGGGRSFSQP|kprcmlvtwelalakes*	.
TALL036	C19orf25	DAZAP1	-/-	+/+	19:1478774	19:1432514	splice-site	splice-site	inversion	upstream	upstream	0	2	0	97	1529	low	.	.	duplicates(3)	GGATGTGCGGGGTGCGCCGGCAGAGGATCCAGTGTTCACCATCCTGGCCCCGGAAG|GTTTTGGCTACGGGCCTCCACCTCCACCGCCAGATCAGTTTGCCCCTCCGGGGGTTCCTCCTCCACCAGCCACTCCCGGGGCAGCACCTCTGGCTTTCCCACCGCCTCCGTCTCAGGCTGCCCCGGACATGAGCAAG...TCCCCTATGGTCAGTATG___CAGGTTACGGGCAGGACTTGAGTGGCTTCGGACAGGGCTTCTCAGACCCCAGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCG	in-frame	DVRGAPAEDPVFTILAPE|gFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMS	.
TALL036	POLR2J	ATAD2	-/-	-/-	7:102478809	8:123380675	splice-site	splice-site	translocation	upstream	downstream	0	1	0	1052	185	low	.	.	.	GCAACGGCGGCGGGAGCATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAAGA|TGGGTCATCAGTTAAGGAAGTTGAAACCTACCACCGGACACGTGCTTTAAGATCgTTGAGAAA...AGTTTTGAGAAGAATGTGGAAATAACGGAGCAACTTGCTAATGGCAGGCATTTTACAAG___GCAGTTGGCCAGACAGCAGGCTGAT[a]AAAAAAAAAGAAGAGCACAGAGAAG___ACAAAGTGATTCCAG	out-of-frame	MNAPPAFESFLLFEGEK|mghqlrklkpttghvl*	.
TALL036	ITGAE	PPIE	-/-	+/+	17:3801111	1:39752910	splice-site	splice-site	translocation	upstream	upstream	0	1	0	70	391	low	.	.	.	GCAAGGATGTGGCTCTTCCACACTCTGCTCTGCATAGCCA|GTCTACTATCCATGGCCAACTCTGGCCCAAACACCAATGGCTCTCAGTTCTTCCTGACATGTGACAAGACAGACTGGCTGGATGGCAAGCATG...CCCTCCGCTCTTGACCCTGCATATCCAGGAAGGAACTGCCAGCCTCAGAGGAGGCAGCACCGAGGGTGCCTGTTTGAAGCAAGCAGCATTTGGGATATGTGCCCTTCCTCAGGGTCTGCTTGGAGCAGCTCCT	in-frame	MWLFHTLLCIA|sLLSMANSGPNTNGSQFFLTCDKTDWLDGKH	.
TALL036	TBCD	CDK2AP1	+/+	-/-	17:82870380	12:123267282	splice-site	splice-site	translocation	downstream	downstream	0	1	0	322	572	low	.	.	duplicates(1)	CGCGTGCCTATGAGCCTCAGGAGCTGAAGCCCTTTGTGACTGCAATCTCGAG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGACTACGGGCCACCGTCCCTAGGCTACACCCAG___GGAACTGGGAACAGCCAGGTGCCCCAAAGCAAATACGCGGAGCTGCT	out-of-frame	RAYEPQELKPFVTAISs|wecplafhqhgnvftvppaaq*	.
TALL036	R3HDM4	TCF3	-/-	-/-	19:913087	19:1624000	splice-site	splice-site	duplication	upstream	downstream	0	1	0	329	504	low	.	.	.	GCGGCGGCGGCGGCGACAGCGTGCGAGCCATGGTCGCGCTGGAGAACCCCGAGTGCGGCCCGGAGGCGGCGGAGGGCACCCCGGGCGGGCGGCGGCTGCT|ACACGCAGCCCAAGAAGGTCCGGAAGGTCCCG...AAGACCCCCAGCAGCACCTATCCCGCCCCCTTCTACGTGGCAG___ATGGCAGCCTGCACCCCTCAGCCGAGCTCTGGAGTCCCCCGGGCCAGGCGGGCTTCGGGCCCATGCTGGGTGGGGGCTCATCCCCGCTGC	out-of-frame	MVALENPECGPEAAEGTPGGRRLl|haaqegpegp	.
TALL036	WDR1	KLHL24	-/-	+/+	4:10097711	3:183650296	splice-site	splice-site	translocation	upstream	upstream	0	1	0	1620	209	low	.	.	.	CGGGAAGCGATGATAACTGCGCGGCATTCTTTGAGGGACCCCCATTCAAGTTCAAGTTCACAATTGGC|CCACATAAAGAAGATCCCTAATAGTCATTTCTCAACAATTATATAGTCAACTGATGTAACAATGGTACTAATATTGGGACGCAGACTAAACAGAGAGGATCTTGGGGTGCGTGATTCCCCAGCAACTAAGCGAAAAGTTTTT	out-of-frame	GSDDNCAAFFEGPPFKFKFTIG|phkedp*	.
TALL036	CCT2	NUP107	+/+	+/+	12:69586344	12:68733452	splice-site	splice-site	duplication	downstream	upstream	0	1	0	1124	393	low	.	.	.	GAGGGGATTCACTTGTGTGCGGAACTCCTCGGAACCATG___GCGTCCCTTTCCCTTGCACCTGTTAACATCTTTAAGGCAGGAGCTGATGAAGAGAGAGCAGAGACAGCTCGTCTG|CATCAAAAAAGCACGAAGC...TGGTATTTGGAAAGGGCATTTGGATGCCCTAACTGCTGATGTGAAGGAGAAAATGTATAACGTCTTGTTGTTTGTTGATGGAGGGTGGATGGTGGATGTTAGAGAG___GATGCCAAAGAAGACCATGAAAGAAC	out-of-frame	MASLSLAPVNIFKAGADEERAETARL|hqkstk	.
TALL036	DAZAP1	SUMO3	+/+	-/-	19:1407802	21:44814104	splice-site	splice-site	translocation	downstream	downstream	0	1	0	1026	1008	low	.	.	.	CCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|GAGGGTGTGAAGACAGAGAATGACCACATCAACCTGAAGGTGGCCGGGCAGGACGGCTCCGTGGTGCAGTTCAAGATCAAGAGGCACACGCCGCTGAGCAAGCTGATGAAGGCCTACTGCGAGAGGCAG___GGCTTGTCAATGAGGCAGATCAGATTCAGGTTCGACGGGCAGCCAATCAATGAAACTGACACgCCAG	out-of-frame	MNNSGADEIg|rv*	.
TALL036	GLMN	TSPAN7	-/-	+/+	1:92297404	X:38666121	splice-site	splice-site	translocation	upstream	upstream	1	0	0	49	651	low	.	.	.	GGAGAGGCGAGGGTTCTGGCCG___ATTTTAGCATCGAAACTAGGAGAAATAAGAATGGCTGTAGAGGAACTTCAGTCTATAATAAAGAGATGT___CAAATCCTAGAAGAGCAAGACTTTAAAGAAGAGGATTTTGGCCTATTTCAGTTAGCTGGGCAAAGATGCATAGAAGAAGGGCACACAGACCAGCTATTAGAAATTATTCAAAATGAAAAGAATAAG|ATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGG	in-frame	MAVEELQSIIKRCQILEEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQNEKNK|ITGVILLAVGV	.
TALL036	RUFY3	GRSF1	+/+	-/-	4:70705294	4:70836314	splice-site	splice-site	inversion	downstream	downstream	0	1	0	185	493	low	.	.	.	GCGGCGGCGGCGGCAGCAGCGGCAGCGGCAAGCACC|GAGTCCAAAACTACTTACCTGGAAGACCTTCCACCACCCCCTGAGTATGAATTGGCCCCGTCCAAGTTAGAAGAGGAAGTGGATGATGTCTTTCTC...ATTGAAATGGAGTCAGAGtAGGATGTGCAGAAAGCCTTAGAGAAGCtCCGCATGTACATGGGCCAGCGGTATGTGGAAG___TATATGAGATAAACAATGAAGATGTGGATGCCTTAATGAAGAGCTTGCAGGcCA	out-of-frame	GGGGSSGSGKH|rvqnylpgrpsttp*	.
TALL036	GLMN	RP5-972B16.2	-/-	+/+	1:92297404	X:38666121	splice-site	splice-site	translocation	upstream	upstream	1	0	0	49	651	low	.	.	.	GGAGAGGCGAGGGTTCTGGCCG___ATTTTAGCATCGAAACTAGGAGAAATAAGAATGGCTGTAGAGGAACTTCAGTCTATAATAAAGAGATGT___CAAATCCTAGAAGAGCAAGACTTTAAAGAAGAGGATTTTGGCCTATTTCAGTTAGCTGGGCAAAGATGCATAGAAGAAGGGCACACAGACCAGCTATTAGAAATTATTCAAAATGAAAAGAATAAG|ATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGG	in-frame	MAVEELQSIIKRCQILEEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQNEKNK|ITGVILLAVGV	.
TALL036	CLIP1	RSRC2	-/-	-/-	12:122377389	12:122508447	splice-site	splice-site	duplication	upstream	downstream	0	1	0	65	1532	low	.	.	.	GTGAATCTATCTCCAACCTTTCAGAGGCTGGCTCAATCAAGAAAGGAGAAAGAGAGCTCAAAATCGGAGACAGAGTATTG|CTGCAGCTACTGGAGGTTCTGTTCTCAATGTTGCTGCCCTGTTGGCATCAGG...GCTGAAATATGGGAAAAATTGAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGGAAATTGATGGGTATTAAG___AGTGAAGATGAAGCTGGATGTAGCTCAGTTGATGAAGAAAGTTACAAGACTCTGAAG	out-of-frame	ESISNLSEAGSIKKGERELKIGDRVL|lqllevlfsmllpcwhq	.
TALL036	ELOVL5	UBB	-/-	+/+	6:53348815	17:16381904	splice-site	splice-site	translocation	upstream	upstream	0	1	0	970	22039	low	.	.	.	CGCCGCCGCCGCCTTGCTGCTGCTCAAAGCTGCTGCCGCCCCTTGGGCTAAAAGGT|CAAAATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAA...AGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACC___C	.	.	.
TALL037	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	11	11	9	322	172	high	.	.	duplicates(41),low_entropy(6),mismappers(9),mismatches(5)	ATTCCAGCTTCCTTTTTAACATAGGCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___AC	.	.	.
TALL037	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	7	10	78	172	high	.	.	duplicates(13),low_entropy(1),mismappers(10),mismatches(3)	AAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGAC...CAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAtTCTCTCGATTCAGTGCCACCCCTGCCCTTTACATTTTAtCTCCCTTCAACCCTATTAGAAAATTAGCTATTAAGATTTTGGTACATTC___TTT	.	.	.
TALL037	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	11	1	1	136	172	high	.	.	duplicates(51),low_entropy(1),mismappers(30),mismatches(6)	AATTCCAGCTTCCTTTTTAACATAGGCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___...GCAAAAATGAAGACGATGATGGCCAACACCAAG___...CTGAAGACTGGCGTGGTCTGTCTGTCTTCACCCTCCAGAGGATAGAGGACCTG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCCTGCCCTTTACATTTTAACTCCCTTCAACCCTATTAGAAAATTAGCTATTAAGATTTTG	.	.	.
TALL037	AC013463.2	SCN2A	+/+	+/+	2:165091299	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	3	343	172	low	.	.	duplicates(7),mismappers(3),mismatches(1)	G___GCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAG	.	.	.
TALL037	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165313620	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	2	322	261	low	.	.	duplicates(6),mismappers(2),mismatches(1)	ATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CCAGTGTCCTGAAGGATACATCTGTGTGAAGGCTGGTAGAAACCCCAACTATGGCTACACGAG	.	.	.
TALL037	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	10	15	6	152	72	medium	.	.	duplicates(30),low_entropy(3),mismatches(1)	CCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___...AAGCTTATAGCTTCATTGCAC...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAG	.	.	.
TALL037	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	2	2	31	38	medium	.	.	duplicates(10),mismatches(2)	CCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC?GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCG...CCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCC	.	.	.
TALL037	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	5	1	0	350	63	medium	.	.	duplicates(9),mismappers(3)	AATTACCAGATCTCCGTCAAGTGCAGTAACCAGTTCAAGTTGGAAGTGTGTCTTTTGAATGCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGG...GAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAG	.	.	.
TALL037	XG	TOMM22P2(12810),RPS4Y1(458)	+/+	./+	X:2774739	Y:2841028	splice-site	intergenic	translocation	downstream	upstream	3	0	2	2711	282	medium	.	.	duplicates(5)	CTGAGGTTCTTGCATCCTGAAGCAAACCATGGAGAGCTGGTGGGGACTTCCCTGTCTTGCGTTCCTGTGTTTTCTAATGCACGCCCGAG___GTCAAAGAGACTTTGATTTGGCAGATGCCCTTGATGACCCTG___AACCCACCAAGAAGCCAAACTCAG|GTTTTACGACATGGACAGAGCTGTGCAGCCATCATCACGAGCTAATCCAAAGCAAG___GACTTTTGCTAAATATTTTGAAGGTCGGCGAAAGATAAGTTTAAGAGTGTAAACTGCGTCCTCCCAGCTCAGCCAACTTGACGGGGGGTAGGCACAACAAAAAGTCCTGCGGCATAACTGACACCTG	out-of-frame	MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNS|gfttwtelcshhheliqskdfc*	.
TALL037	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	1	6	51	medium	.	.	duplicates(1)	GGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGaCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCG...GCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCG	.	.	.
TALL037	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	5	115	436	low	.	.	duplicates(9)	CCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL037	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	5	1	1	42	18	low	.	.	duplicates(4),mismappers(1)	TTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGG...AGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAgTCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAGTCCATCC	.	.	.
TALL037	GFRA4	ATRN	-/-	+/-	20:3663354	20:3649255	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	4	2	1	460	82	low	.	.	duplicates(7),low_entropy(4)	AGACAGCTGGGTTTTCACTGTGCTCCTGCTCCAGAGGCACTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|GCTCTCTTGTGACGCGCAACACTGCCAGATGACAACCAATTCCTTCTTGGAAACAGGCTgCGAGCCCAGCGCCTCTTACTCCCTGCCATTCCCTTTTTCTGCCCTGAGGCCGGAGAAAGCTGTTTGCTGTCGGTTGCAAAGGAGAAGCAGGTGGATTCAGCGGCTTCCCCACCGCTGGAGCAGAAT	out-of-frame	MVRCLGPALLLLLLL|gslvtrntar*	.
TALL037	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	5	0	133	21	low	.	.	duplicates(9),low_entropy(2)	GTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCC	.	.	.
TALL037	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	0	156	175	low	.	.	duplicates(7),low_entropy(1)	ATTACATAAAAG___TGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAAC...GTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTATCTCTGTTTCTGGGGTTTTTGCAGTGACTTTTTCTGTGGTATTTGCATACGTAGCAGcTATAACCCAAG	in-frame	it*kWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPK	.
TALL037	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	135	175	low	.	.	duplicates(2)	AAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACC...CTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG	out-of-frame	LQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL037	TTTY15	USP9Y	+/+	+/+	Y:12690328	Y:12707762	exon	intron	deletion/read-through	downstream	upstream	0	0	4	19	10	low	.	.	duplicates(3),mismappers(1),mismatches(1)	GAAAACCTAAAGTATTTGCCGTTGGTGATTCAAGG___GAATCAAACTTGACGTATGGAGCCAAGAAAGCCCTTGGAAAAACTGGCCTCATATTTTGTGTACACAGTCCCTGTACAGGGTTTCTGACCTGTG___TTC...|...GGAGTCTCACTCTGTCGCCCAGACTAGAGTGCAGTTGTGTGATCTCAGCTCACTGCAAGCTCTGTCTCCCAGGTTCACACCATCCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACAACAG___GTATTAAATTTTC	.	.	.
TALL037	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29505970	exon	5'UTR	deletion/read-through	upstream	downstream	2	1	1	21	15	low	.	.	duplicates(4),low_entropy(1),mismappers(1)	CTGACTCTTCCCCTGAGGTTATAAATTATTTAGGAAATAAAGCATGTGAGTGCTACATCTCAATTGCCGATTGGGCTGCTGTGCAGGAATGGCAGAACGCTATCCATGACTTGAAAAAGAGTACCAGTAGCAC...AGCAATTAGAATTGTTACCAGGAGAAAATATCAATCTACTTGCTGGAGGGTCAAAAG[a]AAAAAATAG___ACATGAAAAAACTGCTTCGTAACATGTGAAGTCCAGATCCAAGGGAACCTCAGAAATCCATTGA...ATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTTCAGGCACAGAACTGTATATCCAATAATAGTGAAATGGATCCCACTAATTATGACAGAAATGATGATACATTTAAATGACTTGG...GTGAGTGAGTGCAGACAGATGGGGCCTGGTGCCCTTGAGCAGTTCCCGGGTCTCAGCTGCCACACATCTCATAGCGGGTGATGCTGGGGGAAGCTTACGCAGTCACAGTACTGGCTTCTTCCTCTTTTTCTTT	.	.	.
TALL037	PIGM	HERC2	-/-	-/+	1:160030845	15:28121835	CDS	intron	translocation/5'-5'	upstream	upstream	0	0	3	120	8	low	.	.	duplicates(1)	ACACACCTACTTTTATCACCTGACTAGGCGGGATATCCGTCACAACTTTTCTCCGTACTTCTACATGCTGTATTTGACTGCAGAGAGCAAGTGGAGTTTTTCCCTGGGAATTGCTGCATTCCTGCCACAGC...|...GCCTGCCATACAGCAGCCACGGGCCAGGGAGCACCGCGGAGCCAGCCGGACCTTGGATCGCCACTGCCTGCCATACAGCAGCCACGGGCCAGGGAGCACCGCGGAGCCAGCCGGACCTTGGATCGCCACTGCCTGCCATACAGCAGCCACGGGCCAGGGAGCACCGCGGAGCCAGCCGGACCTTGGATCGCCACTGCCTGCCATACAGCAGCCACG	.	.	.
TALL037	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	144	13	low	.	.	duplicates(1)	CTATGGCGGTCCTTCTCCTCCTCCACTCTGCAACACCCAACTCTTTGAGAGCTTTCTCTTGAGCATATTTGGCCCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAG___GACAAGGTGGCGAGGCTTGC...CCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGG___GGACCAGGTTCTTCGAGTCCTGGCCAAAGATGAaAAGCAG	out-of-frame	PTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalswqqlwak*	.
TALL037	CPA4	CPA5	+/+	+/+	7:130322761	7:130346393	3'UTR	splice-site	deletion/read-through	downstream	upstream	0	1	1	133	13	low	.	.	duplicates(2),mismappers(1)	TATGGCTTCCTCCTGCCAGCTAACCAGATCATCCCCACTGCAGAGGAGACGTGGCTGGGGCTGAAGACCATCATGGAGCATGTGCGGGACAACCTCTACTAGGCGATGGCTCTGCTCTGTCTACATTTATTTG...CACACGTGCACGCACTGAGGCCATTGTTAAAGGAGCTCTTTCCTACCTGT|GCTGGGCTTTCCAGCCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCAC	.	.	.
TALL037	CPA4	CPA5	+/+	+/+	7:130312122	7:130346393	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	144	13	low	.	.	duplicates(3)	CTATGGCGGTCCTTCTCCTCCTCCACTCTGCAACACCCAACTCTTTGAGAGCTTTCTCTTGAGCATATTTGGCCCTCCCTCATGTGTGCATGACGTCTCCCTTCTCAGGATAG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GCTGGGCTTTCCAGCCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCG	out-of-frame	mavllllhsatpnslrafs*aylalphvcmtspfsg*DKVARLAAKALASVSGTEYQVGPTCTTV|cwafqplgavls*	.
TALL037	CEP152	RP11-227D13.5(19796),CEP152(30076)	-/-	./-	15:48717018	15:48682852	splice-site	intergenic	deletion/read-through	upstream	downstream	0	3	0	17	9	low	.	.	duplicates(3)	CAAGGATAAACCTGATACCCATGGCAGTAGAAAGCCTACACTTACCCACTCAGATGCTCATCAATGGAGGAGAGACTTATGCCTGGAGGAACTTGGAAATCAAACTCA|ATTCTGTCTTCTGTGCCATGTGGCCATTACTGAAGAACTGAGGAGGGGTGGCGTTGGCAATTCAAGATGGTCTTTCCTACCCTCTTCAGTGCCTCTTTCAGTGATATGAAGTTAAAACCAG___GCAATCACCAGTCATGGA	.	.	.
TALL037	TIMM23B	AGAP6	+/+	+/+	10:49955060	10:49991676	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	2	140	192	low	.	.	duplicates(1)	ACCACTCGGTTTGCTGCGATACCATGGAAGGAGGCGGGGGAAGCGGCGACAAAACCACAGGGGTATTGGCCGGCTTTTTCGGAGCCGGCGAAGCAGGTTACTCGCACGCGGATTTGGCTGGCGTCCCGC___TA...GCCTGGTCCAAACCAGGAAATGTACA___GATTTTGAATATGGTGACTAGGCAAGGGGCACTTTGGGCTAATACTCTAGGTTCTCTGG|CTTTGGAGTTTAACCCTTCTGCCAATCCAGAGGCAAGCACAATATTCC...TCAAACAGATG___TTGTAGAAATAAGAAGAAGCAACTGTACAAACCAT___aTATCTGCTGTGCGTTTCAGTCAACAATACAGCTTGTGTTCGACAATATcCCTTGAT	in-frame	AWSKPGNVQILNMVTRQGALWANTLGSL|aLEFNPSANPEASTIF	.
TALL037	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87036400	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	0	2	120	9	low	.	.	duplicates(1)	CAAAAATCTCTCTGCTTCCTTTCCAATGGAAGAATCTTCAATCAACTACACATTTAAAACACCAGAAAAGG___AGCCTCCATTATGGCATGCTGAATTTACCAAAGAAGAATTGGTTCAGAAGCTCAGTTCCACC...ACCAGTGCAGTCCTTATGGAGCAAATTAAG___CTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTTTCTATCAACACCACGAGAGAAACACACCCTCCAGCCTGGGTCCCAGAATGAGGCAG___CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTG	out-of-frame	TSAVLMEQIKLLKSEIRRLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|gfyqhherntpsslgprmrqptgllqyvcelsldiqgqcqplqpl	.
TALL037	GXYLT2	PPP4R2	+/+	+/+	3:72967719	3:73059037	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	2	196	227	low	.	.	duplicates(5)	GTTGTACCCTCTGTACCAGAAGTACAAGAAcGCCATCACGTGGGGAGACCAGGATTTATTAAATATTATTTTTTATTTCAACCCAG___AGTGTCTCTATGTATTCCCCTGCCAGTGGAACTACCGTCCCGATCACTGCATGTACGGAAGCAACTGCAGAGAGGCTGAGCATGAAGGTGTGTCTGTTCTGCAT...CAACGTTCAGAGCACTCTATGAAGCAATACGGGAT|TATCCCTTTTACTATTCAGCGACTATGTGAATTGTTAACAGATCCAAGGAGAAACTATACAGGAACAGACAAATTTCTCAGAGGAGTAGAAAAG___AATGTGATGGTTGTTAGCTGTGTTTATCCTTCTTCAGA___GAAAAACAATTCCAATAGTTTAAATCGAATGAATGGTGTTATGTTTCCTGGAAATTCACCAAGCTATACTGAGAG___G	out-of-frame	TFRALYEAIRD|ypfyysatm*	.
TALL037	TMEM182	AC007251.2(69929),AC108051.1(1757)	+/+	./+	2:102798000	2:102965651	splice-site	intergenic	deletion/read-through	downstream	upstream	0	1	1	11	5	low	.	.	duplicates(3)	CTCATATATTGCTGCAG|TAGCAGAGCACGAAGATAATGACGAACTAAGAGAATTCTGAATGAAGGTCTGAAATTTCAAGTTCTCAGCAACCTTTCCTGAG___TCCTCATTTGCAGGTGTATTGTTGATTCAAAACTGTTAACTACTGGTGGCCTTTCCACTGGGAAGATGATCATG	out-of-frame	SYIAA|vaehedndelref*	.
TALL037	FECH	Y_RNA(89581),RP11-715C4.1(161843)	-/-	./-	18:57549143	18:78633769	3'UTR	intergenic	duplication	upstream	downstream	0	0	2	8	6	low	.	.	.	ATTAAATGTGAGGAGCTTTTTTAATACAGGAAAAGAAACATGTCATCCACTTGAGTTAATAGTTTTCCTACGTTGATGACAGCCCTCATGAGTAGCATCCACATTTTTAAAATTTCAAATTGGTTTTTCTACT...|...AGGACTAAGGCTGTAACAGTAACTCACAgTGCTTCCTGTATACACGTAGGcCTAAGGCTGTAACAGTAACTCACATTGCTTCCTGTATACACGTAGGACTAAGGCTGTAACAGTAACTCACATTGCTTCCTG	.	.	.
TALL037	DDX47	DDX47	+/+	+/+	12:12829494	12:12826871	CDS	intron	duplication	downstream	upstream	0	2	0	204	27	low	.	.	.	GCCCGAATG___GAGTTAAGGGAGCATGGAGAAAAGAAGAAACGCTCGCGAGAGGATGCTGGAGATAATGATGACACAGAGGGT|CCTCAGTCTCCTGAATGGCTGGGATTACAGGCACATGCCACCACGGTTGGCT...AACGCGTCGCTGAAGCCCAAAGGTTTGCCCGAATG___GAGTTAAGGGAGCATGGAGAAAAGAAGAAACGCTCGCGAGAGGATGCTGGAGATAATGATGACACAG	out-of-frame	ARMELREHGEKKKRSREDAGDNDDTEG|pqspewlglqahattvg	.
TALL037	EEF1A1P6	DNAH11	-/-	+/-	7:22511804	7:21884765	exon	intron	deletion/5'-5'	upstream	downstream	0	0	2	1164	3	low	.	.	mismappers(1),mismatches(3)	CTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTG...|...GGGCAAATCCCCA	.	.	.
TALL037	ACTR3C	AC092666.1(84781),ACTR3C(79142)	-/-	./-	7:150249038	7:150164774	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	2	17	1	low	.	.	.	CTGAAATATTCTTTCACCCGGAG___TTTGCCAACCCAGACTCTATGGAGTCCATCTCAGATGTTGTTGATGAAGTAATACAGAACTGCCCCATCGATGTGCGGCGTCCGCTGTATAAG___ATGGAACAAATTCCACT...|...TATTtgAGAAATTTGAGAGATGATAAAAAAGAAGAAACAAACAAAATATTGGCTGATTTCTGAAATGAGCTCATCTCCTGGCCTGAAGTATGACATCTG	.	.	.
TALL037	CRIPAK	RP11-236B18.2(1847),LINC00502(38929)	+/+	./-	4:1395697	10:91008237	CDS	intergenic	translocation	downstream	downstream	2	0	0	45	47	low	.	.	.	GGAGTGCCCGCCTGCTCACACACATGCCGATGTGGAGTGCCCGCCTGCTCACACGTGCCCATGTGGAGTGCCCGCCTGCTCACACGTGCCCATGTGGAGTGCCCGCCTGCTCAC...GTGCCCGCCTGCTCACACGTGCCCATGTGGAGTGCCTGCCTGCTCACACACGTGCCCATGTGGAGTGCCCGCCT|GATGTGGTAGAAGGAGTATTCCCGGAGGGTAAACTCTGGCTAAAAGTGTAA	out-of-frame	CPPAHTCPCGVPACSHTCPCGVPA|*	.
TALL037	MTA3	HAAO	+/+	-/+	2:42722980	2:42776263	CDS	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	100	1	low	.	.	duplicates(3),mismappers(1)	CTGAAAAGCAAAAGCACTAGGAAGCCTTTGGCATGTATCATTGGGTATTTAG___AGATCCATCCTGCAAAGAAACCTAATGTAATTCGATCTACACCAAGCCTGCAAACCCCAACTACCAAGCGGATGCTAACAACTCCAAATCAC...|...GAGTTTCACTCTTGTTGCCCAGGCTGGAATGCAATGGTATGATCTCGACTCACTGCAACCTCTGCCTCCTGGGTTCAAGAGATTCTCC	.	.	.
TALL037	LINC01573	EXOC2	+/+	-/-	9:136547836	6:549188	intron	CDS	translocation	downstream	downstream	0	0	2	25	64	low	.	.	duplicates(1)	CCGGGGGCCAGTCCTCAGCATTTTGCGGAGGGGCGGCCTGGGAGGGGAGGAGGGGATCCCTGGATAGGGGGTCTCCCCTGGTCTGCCCCAGCTGTGCCGACAGCACCTCCACCTTGGGCCTCCATCCTCTACC...|...AAAAAATCACACAG___GTTAGCATGGCCTCATTGAAAGAACTAGATCAAAGACTCTTTGAAAATTACATCGAGTTGAAAGCAGATCCCATCGTTGGCTCCTTAGAACCTGGAATTTATGCAGG	.	.	.
TALL037	SPAG9	MBTD1	-/-	-/-	17:51047375	17:51193510	splice-site	splice-site	duplication	upstream	downstream	0	2	0	34	94	low	.	.	duplicates(1)	CAAAGACACACTGAG___ATGATCCATAATTATATGGAACATTTAGAAAGAACAAAACTTCATCAGCTCTCAGGGAGTGATCAACTAGAATCCACAGCTCATAGTAGAATTAG|GTTACACAAAACTTCCTTTTAAATGGTTTGACTACCTCAGGGAAACTGGCTCCATTGCAGCACCAGTAAAACTATTTAATAAG___GATGTTCCAAATCACGGATTTCGTGTAGGAATGAAATTAGAAGCAGTAGATCTCAT	out-of-frame	QRHTEMIHNYMEHLERTKLHQLSGSDQLESTAHSRIr|lhktsf*	.
TALL037	SNHG1	CPT1A	-/-	-/-	11:62852656	11:68761687	splice-site	splice-site	duplication	upstream	downstream	0	2	0	3380	330	low	.	.	duplicates(2)	G___GAAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTTACAG___GTCTGAGCAAATAAGGTGTATAAAAAATG___GAATCTGTCTTGGAGGACATCAGAAG|GTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCTCTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGTCTAAATATCTCGCTGTGGAGTCCCCT	.	.	.
TALL037	TPD52	GPR180	-/-	+/+	8:80042619	13:94625967	splice-site	splice-site	translocation	upstream	upstream	1	0	0	67	74	low	.	.	.	CTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGC___TTACAAGA...TTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCTGGAAGATGTAAA___AAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGG|GCTGTATCTTGTGGTTTTTATGCCATCCAGTTCTTG	in-frame	SSVGSVITKKLEDVKNSPTFKSFEEKVENLK|gCILWFLCHPVL	.
TALL037	AGPAT2	LZTS2	-/-	+/+	9:136687178	10:101002495	splice-site	splice-site	translocation	upstream	upstream	1	0	0	102	15	low	.	.	.	CGGGGGAGAAGCGGGAGCGGGAGCGGGAGCGAGCTGGCGGCGCCGTCGGGCGCCGGGCCGGGCCATGGAGCTGTGGCCGTGTCTGGCCGCGGCGCTGCTGTTGCTGCTGCTGCTGGTGCAGCTGAGCCGCGCG...CGCCGTGGCCTCGCTCGTCTGCCTGCTGCGCCACGGCGGCCGGACGGTGGAGAACATG|AGGTCGCCTGCGAGGCCGCTGGCCAGGCCTGAGCCTCTGCCACCATGGCCATTGTGCAGACTCTGCCAGTGCCAC	out-of-frame	AVASLVCLLRHGGRTVENM|rsparplarpeplppwplcrlcqc	.
TALL037	KIAA1429	GATAD2B	-/-	-/-	8:94553385	1:153813452	splice-site	splice-site	translocation	upstream	downstream	0	1	0	37	98	low	.	.	.	GCAAACATGGCGGTGGACTCGGCGATGGAGCTGTTATTTTTAGATACTTTTAAACACCCGAGCGCTGAG|GCAAAAGCTGTGCCTCACTTCTGCGGGTTGAACCCTTTGTATGTGCCCAGTGCCaCACAGATTTCACCCCTCACTGGAAGCAAGAAAAGAATGGTAAGATTCTATGTGAGCAGTGTATGACCTCC	out-of-frame	MAVDSAMELLFLDTFKHPSAE|akavphfcglnplyvpsatqispltgskkrmvrfyvssv*	.
TALL037	RP11-26J3.4	GPR180	-/-	+/+	8:80042619	13:94625967	splice-site	splice-site	translocation	upstream	upstream	1	0	0	67	74	low	.	.	.	CTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGC___TTACAAGA...TTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCTGGAAGATGTAAA___AAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGG|GCTGTATCTTGTGGTTTTTATGCCATCCAGTTCTTG	in-frame	SSVGSVITKKLEDVKNSPTFKSFEEKVENLK|gCILWFLCHPVL	.
TALL037	KLF12	PIBF1	-/-	+/+	13:73994990	13:72854057	splice-site	splice-site	inversion	upstream	upstream	1	0	0	107	210	low	.	.	duplicates(1)	CGGGCTGCGAGGGAGGAGAAGCGGCGTCCTGCAACCCCCTCGGCTGGGCCCCGGGGTAATTCGATGCGGGCCTGGCGAGGCTCCCCACACTAGACCGGGGCTCGCAACTCGGCAGCCTCCACCCACCGGCCC...GGATCAATGTGACTCTAAGAACAAATGGATGAATGAATATCCATATGAAGAGAAAAACAATAAAG|AAATCTCCGAGAAGCAAGGGATAATGCTGTGGCTGAAAAGGAACGAGCAGTGATGGCTGAAAAG	out-of-frame	MNIHMKRKTIK|ksprskg*	.
TALL037	KLF12	PIBF1	-/-	+/+	13:73943981	13:72998822	splice-site	splice-site	inversion	upstream	upstream	0	1	0	95	107	low	.	.	.	CTTTGAGAACAGAATGTTAATGCTTGATGGGATGCCGGCAGTCAGAGTCAAAACAGAGCTTTTGGAATCTGAACAAGGG|GAATTGGCAGCAATGAAACAGATTCTCGTTAAGATGCATAGTAAACATTCTG...CATGAAGACAATATATTTACACCTAAACCAACACTCTTT___ACTAAAAAAGAAGCACCTGAGTGGTCTAAGAAACAAAAGATGAAGACCTAGTGTTTTGGATGGGAAGCACCTGTAGACCATTATATACTCCTG	in-frame	MPAVRVKTELLESEQG|ELAAMKQILVKMHSKHS	.
TALL037	AKT3	SDCCAG8	-/-	+/+	1:243613671	1:243378721	splice-site	splice-site	inversion	upstream	upstream	1	0	0	53	75	low	.	.	duplicates(1)	GGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG|GAAATAGAGAAATTGAGAATAGAACTGGATGAAAGCAAACAACACTTGGAACAGGAGCAGCAGAAGGCAGCCCTGGCCAGAGAGGAGTG	in-frame	AHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGE|EIEKLRIELDESKQHLEQEQQKAALAREE	.
TALL037	TARDBP	PRPF38B	+/+	+/+	1:11022177	1:108696041	splice-site	splice-site	deletion	downstream	upstream	0	1	0	677	389	low	.	.	.	TTAAAGGAATCAGCGTTCAT|AGGTTCGAGGTGTTGGAACAGGAGGAATTGTTTCTACAGCATTTTGCCTGTTATACAAATTATTTACCCTGAAGTTAACTCGAAAGCAAGTGATGGGTCTTATAACACACAC...GTCAACAAGGGTAATAATTTGTTTTCTTCTGATTACTCTCATATTTTTATTATCTTTTATTTATTGGTGGTTTAATGTCTTCAAGAACTTCCTGTAGTTAAATTTATTTCAGTGAGATACTTTTGGAATTAAT	out-of-frame	KGISVH|rfevleqeelflqhfacytnylp*	.
TALL037	CCDC138	TAPT1	+/+	-/-	2:108816105	4:16176228	splice-site	splice-site	translocation	downstream	downstream	0	1	0	238	60	low	.	.	.	AGAATCTGGAATGGATGGTAAAAAACCACAACTCAAATTTGCTTCCCAGAGAAATGATATTCAGGAGAAGTGTGTAAAG|ATCATCTCTGGGTGTTGTTTCCAGATGTCTGTATGGTAATTGCATCAGAAATTG...TTTAAGTTTCTAAAAATTATTACACTATTGAAAGTATTCTGTTTTAATATTAGGCAATGATAATTCCATATTCTTGGGGTAGAAGTATAGACCAGCCAGTAGTCGAAGTCACAGcGTCACTAACTCAAAATC	out-of-frame	ESGMDGKKPQLKFASQRNDIQEKCVK|iisgccfqmsvw*	.
TALL038	RNPEPL1	ANKMY1	+/+	-/+	2:240574628	2:240497043	splice-site	intron	duplication/5'-5'	downstream	upstream	10	19	8	157	103	high	.	.	duplicates(38),inconsistently_clipped(2),mismatches(1)	AAGTGCtCCTACTCTGCCGTCGTCAAG___GCGCCATCGGGGGTGCAGGTGCTGATGAGTGCCACCCGGAGTGCATACATGGAGGAAGAAGGCGTCTTCCACTTCCACATGGAGCACCCCGTGCCCGCCTACCTCGTGGCCCTGGTGGCCGGAGACCTCAAGCCGGCAGACATCGGGCCCAG___...GTTGGTTCGGCAACGCTGTCACCAACGCCACGTGGGAAGAGATGTGGCTGAGCGAGGGCCTGGCCACCTATGCCCAGCGCCGTATCACCACCGAGACCTACG___GTGCTGCCTTCACCTGCCTGGAGACTGCCTTCCGCCTGGACGCCCTGCACCGGCAGATGAAGCTTCTGGGAGAGGACAGCCCGGTCAGCAAACTGCAGGTCAAGCTGGAGCCAG|TAATTCTGAGTGCACCACTTCCTGGCCATCTTGGAAGCTGAGGATAAGAATGGAGCCGCCACCTCCTCGCCATCTTGGAAGCTGAGCATAAGAATGGAGCCGCCACCTCCTCGCCATCTTGGAAGCTGAGCATAAGAATGGAGCCGCCACCTCCTCGCCATCTTGGAAGCTGAGGATAAGAATGGAGCTGCCACCTCCTCCCCATCTTGGAAGCTGAGCATAAGAATGGTGCCGCCACCTCCTGGCCATCTTGGAAGCACA___GCTCCCCTTCGCCCTCCACTGGGAGTGGAAGCTCCCTGAG	out-of-frame	WFGNAVTNATWEEMWLSEGLATYAQRRITTETYGAAFTCLETAFRLDALHRQMKLLGEDSPVSKLQVKLEP|vilsaplpghlgs*	.
TALL038	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	26	14	189	83	medium	.	.	duplicates(45),low_entropy(1),mismappers(1)	CCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTAC...CCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGGG	.	.	.
TALL038	NAA16	NAA16	+/+	+/+	13:41376074	13:41373462	3'UTR	intron	duplication	downstream	upstream	1	2	3	304	66	medium	.	.	duplicates(2)	ATTATAATTTCTTACTAAGCTAAGTTGTATACAACCCCACTGTATTATTTTCTTTAGATTCTGATTTCAGGATCTGTGCTTTGATTCCTTGTCTGTTTTATCGTATATTTGCTTGCTTTTTAATTAAAGCACATCAGTTTTAAAGTGTTAACTATATGTT...CCCAGACTGGCGGATCACCTG|TGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCATAAAGGGTTTTCAGTAGGTTTTTTTTTTTTCAAAGGACAGATCAAAAACAAAAAATCCAAATGTTTTTGTTTTTATAGTGTCTAATCATAGTAATCTTCC	.	.	.
TALL038	HADHB	HADHB	+/.	+/.	2:26260328	2:26263043	intron	intron	duplication	upstream	downstream	2	0	2	41	39	medium	.	.	duplicates(3)	.	.	.	.
TALL038	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	1	12	18	medium	.	.	duplicates(2)	CCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGgCA	.	.	.
TALL038	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	17	36	medium	.	.	duplicates(6)	GCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCaCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCC	.	.	.
TALL038	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	1	1	0	230	54	medium	.	.	duplicates(3),mismappers(2)	TTTTGAATGCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGaCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGG...CTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGG...CCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATG	.	.	.
TALL038	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	6	2	84	315	low	.	.	duplicates(10),low_entropy(1)	TCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGgTGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCCATGCCAGGGCCAAGACTGGGACCAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL038	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	6	315	low	.	.	duplicates(1),read_through(2)	GTTCCGGTCCGGCTTTTCAGGCCGGACGGGTGCCTGCCCCTCAGGTGCGAGTTTGTGCGGTAAAGAACACACCCCGGAGATGTGGACACGGCCGCCCCAGGAGGGTCCTTGTTTGGAG___GTGGAAATCAACG...AGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___AGATGCAGTCTCACCCTGTTGCCCACaCTGGCCTGGAACTCCTGAGCTCAAAAGATCCCTCCGCCTTGACCTTCCAAAGTGCTGGGATTACAAG	out-of-frame	GQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL038	CDKN2A	MTAP(17355),CDKN2A-AS1(16835)	-/-	./-	9:21994186	9:21950094	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	8	66	44	low	.	.	duplicates(4)	TAAGGGGGCAGGAGTGGCGCTGCTCACCTCTGGTGCCAAAGGGCGGCGCAGCGGCTGCCGAGCTCGGCCCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCT...|...CCATTCAGTATGATGTTGTCTGTGGATTTGTCATACATGGCTCTAATTATTTTCAGGT...___GTTTCGTTATCAGGATGATGCTGGCCTCACAGAAGGAGTTGGGGAGGAGTCCCTCTTCCTCAATTTTTTGGAATAGCTTCATTATTAATGGCACCAGCTATTCTGTCTACATCTGGTAGAATTTGG	.	.	.
TALL038	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	2	337	154	low	.	.	duplicates(9),mismatches(1)	ATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTT[t]CAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTG...GCTGTTATCTCTGTTTCTGGGGTTTTTGCAGTGACTTTTTCTGTGGTATTTGCATACGTAGCAGATATAACCCAAGAGCATGAAAGAAGTATGGCTTATGGACTG___GTTTCAGCAACATTTGCTGCAAGTTTAG	out-of-frame	FGLMGVYIYDGELVSKNGFFsgi*ptdldsscssgtwrpcnsccy*vcr*yfkricnlfidniinidllflasrfcanq|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDV	.
TALL038	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	433	154	low	.	.	duplicates(5),low_entropy(1)	CTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAG	in-frame	LMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKI	.
TALL038	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	429	154	low	.	.	duplicates(3)	GGGCTCTCAATATGTTTATGTAAAATGTTATGGAAATTAAACTTCAATTTTATTTTTCTTCTTATTTAGTGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTC...GTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTC	out-of-frame	FSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL038	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21904258	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	4	0	0	64	100	low	.	.	duplicates(13),low_entropy(1)	CCGAGtTCGGCCCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAACACACAGGCAGCTGGATGTTGAGAGGAGCACATCAGCAGGCACCAGCACACTGGCAGGCCACTGACCA	out-of-frame	MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg*	.
TALL038	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	0	3	1	20	9	low	.	.	duplicates(5)	GAACAATGATGAAACATCCATTTTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAACTGTGAGACATGCACTTGCTACGAAACAGAAATTTCATGTTGCACCCT___TGTTTC	.	.	.
TALL038	PTPN22	RSBN1	-/-	-/-	1:113825142	1:113798036	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	3	332	101	low	.	.	duplicates(3)	GGAAGCTG___GAGAATTCTCACCAAATGTTCCCAAATCCTTATCCTCAGCTGTGAAGGTAAAAATTGGAACATCACTGGAATGGGGTGGAACATCTGAACCAAAGAAATTTGATGACTCTGTGATACTTAGACC...GCCCAATCTATAGAAACATATTCTACTAGCTATCCTGACACCATGGAAAATTCAACATCTTCAAAACAGACACTGAAGACTCCTGGAAAAAGTTTCACAAGGAGTAAG___AGTTTGAAAATTTTGCGAAACATGAAAAAGA|AAACACCAGATGAAAATGGTAAAACCCAG...AAGAAAATAAAGAAGAAAAAGAAAAAGAAACACCGAGAAGACATGCGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGACCCGCATCAGTAAAGAAATTCTCACCCAAGGACAAATAAATAGCACTTCAG	in-frame	AQSIETYSTSYPDTMENSTSSKQTLKTPGKSFTRSKSLKILRNMKK|kTPDENGKT	.
TALL038	RMND5A	AC093616.4	+/+	+/+	2:86740969	2:87716673	CDS	exon	deletion	downstream	upstream	0	0	3	216	12	low	.	.	duplicates(1)	GCTGCACAAGTTCTCgGGCTACGGGCAGCTGTGCGAGCGCGGCCTGGAGGAGCTCATCGACTACACCGGCGGtCTCAAGCACcAGATCCTGCAGAGCCACG___GCCAAGATGCTGAATTATCAGGGACACTTTCACTTGTTTTGAC...|...AATTTATCACTGTCGTGAaCAGCCTGCCTCAGACTGGCCAGAAGCTGTCTGTCTCTTGAtTGGACGTCAGGATCTTTCCAAGCAGGCCTGCGAAGGAAACTTACCCAAAGGGAAGTCT___ATTGCTCCAATTGTGTCAGCGAACTATGGCTCTTCCTGTAGGACGAGGAATGTTTACCTTGTTTTCGTACCATCCTGTTCCAAC	.	.	.
TALL038	NAA15	RAB33B	+/+	+/+	4:139406180	4:139466317	intron	intron	deletion/read-through	downstream	upstream	0	0	2	8	3	low	.	.	duplicates(3),mismappers(1)	GCCGAATTT...|...ACAACCATTGCTAATATTTTGGTATATTTCCTTTTCGTGTcCTTTTTATTTTTTATCTTGTGAATATAATTTGCTTAAAACATTATAAGTCATTTTTCATTGATGAAGTGATGCTTGAACATCTGAGTTAgAG	.	.	.
TALL038	MRPS22	LINC00954(10322),TTC32(1274)	+/+	./-	3:139351044	2:19895369	CDS	intergenic	translocation	downstream	downstream	0	0	2	223	16	low	.	.	duplicates(1)	GTTTATTTCCCAAAAGAAGGTCGTAAAATTTTGACACCAATAATTTTCAAGGAAGAAAATCTTAGG___ACTATGTATAGCCAGGACAGGCATGTTGATGTCCTCAATCTCTGCTTTGCCCAGTTTGAGCCAGATTC...|...GAAAGCTTTAAGCCATTCCACCCAGAGAAGCAAATGCTTAATGTTTAATTTTATTTTCTCTTGACTCATATTCTCTTTACTCTTGACTGGGATCAGATGGAATATGAAAAGGAAAAATTGTTTAACATTTTCA	.	.	.
TALL038	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511462	7:23389114	exon	intron	deletion	downstream	upstream	0	0	2	42	0	low	.	.	duplicates(2),mismappers(1),mismatches(5)	.	.	.	.
TALL038	HIP1	GTF2IP1	-/-	-/-	7:75621318	7:75202602	intron	exon	deletion	upstream	downstream	0	0	2	4	496	low	.	.	duplicates(4),mismatches(1)	TCCTGCCCCTGACTTCC...|...TGGAATGTCAGAATTACCAAGCTACGGAAGCAAGTGGAAGAGATTTTTAATTTGAAATTTG___CTCAAGCTCTTGGACTCACCGAGGCAGTAAAAGTACCATATCCTGTGTTTGAATCAAACCCGG	.	.	.
TALL038	EEF1A1P13	TRIO	-/-	+/-	5:14652602	5:14456417	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	54	0	low	.	.	duplicates(7),low_entropy(1),mismappers(1),mismatches(6)	GAAACAACTAATTGTcGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAAC...|...GGTGACAACATGCTG	.	.	.
TALL038	HELLPAR	PRKXP1	+/+	-/-	12:102202894	15:100556407	exon	intron	translocation	downstream	downstream	0	0	2	2	18	low	.	.	.	CTACAATTGACTTGTCTCTTTTCCTGTTAATGGACTCTTGAATTGTATCCAGTTTTTGGCTATTACGAATAACACTATCTACATTCTTGCACAAGTCTTTTTGTGGACATGTGTTTTTATTTCTCTTGGGTA...|...GAAGTCATCCGCCCGTCCCTCATCTGCGTCCTGAAGGAATCATCCACCCGTCCCTCATCTGCG	.	.	.
TALL038	SRD5A3-AS1	UNC50	-/-	+/+	4:55363930	2:98612842	3'UTR	intron	translocation	upstream	upstream	0	0	2	9	56	low	.	.	duplicates(2)	GAAGGCAACAGGGTCAGCATTTCTCTTCTGGGATTAATCCAAAGTTTTGTTTTTCTGTACTGTTAAGCAAAGTATTAAATCCCATCTAACATCTTTCTTTTTGGTAGTAAGGAAGAAATGGGCCAAATGAAGTC...|...GTACTGTAGTCTTTTAAGTGTACAATAGCACTATGGCTCTAAAAAACAATGTACAGACTAATTTAAAATGCTTTATTGCTTAAAAATGCTGACACAGAGACATGAAGTGGGCATATGCTGCTGGAAAAATGGC	.	.	.
TALL038	DAZAP1	CSNK1G2	+/+	+/+	19:1407802	19:1969508	splice-site	splice-site	deletion	downstream	upstream	1	1	0	497	357	low	.	.	duplicates(2)	CGGCTGTGGGGAGGGCGACGGAGCGGGTGACCTTCCGGAGGCGGGAGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|CTGTGAGCCGTGAGCTTTGAGGCGGTGGGATGTGTCAGCAGAATGTCTCCTGCCC...CGCCCGCCCACCGGCCGCAGTGATGTTCTAGCCACAGAGGAGCCAAGACCTCAGGTTTCCAGAGACTTGGGATTTGCACGGCAGCAGAGTCACCtTGGAGAGGCCAGGGTATCACAAACTTATGGATTTTGAC	out-of-frame	MNNSGADEIg|cep*	.
TALL038	RLF	PPIE	+/+	+/+	1:40161636	1:39748903	splice-site	splice-site	duplication	downstream	upstream	0	1	0	25	422	low	.	.	duplicates(3)	GTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AGAATTTCCGCTGCCTGTGCACTCATGAAAAGGGCTTTGGCTTTAAGGGAAGCAGCTTCCACCGCATCATCCCCCAGTTCATGTGCCAGGGCGGTGATTTCACAAACCACAATGGCACTGGGGGCAAGTCCATCTATGGGAAGAAGTTCGATGATGAAAACTTTATCCTCAAG	out-of-frame	VSSLNYCRSFCQ|risaacalmkralalreaastasspsscaravisqttmalgaspsmgrssmmktlss	.
TALL038	SKIL	ABCD3	+/+	+/+	3:170361427	1:94458605	splice-site	splice-site	translocation	downstream	upstream	1	0	0	94	136	low	.	.	.	CCCAGTTAAAGGAAACTGGCAGTGCCTTTGAAGTGGAGCATGAATGCCTAGGCAAATGTCAGGGTTTATTTGCACCCCAGTTTTATGTTCAGCCTGATGCTCCGTGTATTCAgTGTCTGGAGTGTTGTGGAAT...GAACCAAAAATACTTAGGAACACCTGAAGAAAAGAAACTGAAGATAATTTTAGAAGAAATGAAGGAGAAGTTTAGCATGAGAAGTGGAAAGAGAAATCAATCCA|AGTAAGAAAAGTGGAAAACCACCATTAC	out-of-frame	NQKYLGTPEEKKLKIILEEMKEKFSMRSGKRNQS|k*	.
TALL038	RASA2	NAA50	+/+	-/-	3:141610066	3:113724092	splice-site	splice-site	inversion	downstream	downstream	1	0	0	290	261	low	.	.	duplicates(3)	CTTGTGGAACTATTGCAGTCTATCAAGGACCACAGAAAGAGCCTGATGATTATTCTAACTTTGTAATCGAGGATTCTGTAACAACCTTTAAGACAATTCAGCAAATAAAAAGCATAATTGAGAAGCTGGATGAACCTCATGAAAAATATAGGAAGAAAAGATCCAGTAGTGCAAAATATGGGAGCAA|CCGGATCGAGCTGGGAGATGTGAC	in-frame	CGTIAVYQGPQKEPDDYSNFVIEDSVTTFKTIQQIKSIIEKLDEPHEKYRKKRSSSAKYGSn|RIELGDV	.
TALL038	MAFK	MAD1L1	+/+	-/-	7:1530898	7:1898390	splice-site	splice-site	inversion	downstream	downstream	0	1	0	191	79	low	.	.	duplicates(1)	CCGAGCGCCAGGCGGCGGCGGCGGCCGAGGGGAGCGCGACAGTGAGCGCCGGCGCGAGGACAGCGCGTGCCCGCGAGGAGCCGCCGCGCGCCCGCGCCCTCCGCGCGACGCCAG|AGCTGAAGAAGCAGGTGG...ACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCC	.	.	.
TALL038	ZMYM2	NAF1	+/+	-/-	13:20031433	4:163133258	splice-site	splice-site	translocation	downstream	downstream	1	0	0	482	162	low	.	.	.	CAATACCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAATTCCAGTTGTGTGGCTAAATTTCAG___GCTCTAAGTATGCAGTCATCTCCAAATGGCCAGTTTGTAGCGCCAAGTGATATTCAGTTGAAATGCAACTACTGCAAAAATTCCTTTTGTTCAAAACCAGAAATCCTGGAATGGG|AGGCCTTAGATTTTAGTGATGATGAAAAAGAGAAGGAAGCCAAACAGAGGAAAAAATCTCAGATTCAAG	in-frame	QYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEW|eALDFSDDEKEKEAKQRKKSQIQ	.
TALL038	TBCD	FOXK2	+/+	+/+	17:82911789	17:82601303	splice-site	splice-site	duplication	downstream	upstream	0	1	0	454	485	low	.	.	duplicates(3)	TCATCTTTCTGGGCTTTGAGAGATTCTCAAAGGCTTCTGTGACCCAGAG___CTCTATGATCGTCAGTTATACAG___GGGTCTGGGAGGACAGCTCATGAGACAAGCAG|CCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAAGCGCCACAACGGTGACCAGCtGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAAGACGGCGAG	in-frame	hlsgl*eilkgfcdpeLYDRQLYRGLGGQLMRQA|aAASPLHMLATHASASASLPTKRHNGDQlEQPELKRIKTEDG	.
TALL038	TBCD	FOXK2	+/+	+/+	17:82772507	17:82601303	splice-site	splice-site	duplication	downstream	upstream	1	0	0	103	485	low	.	.	.	ATTTCTTCGTTTATTTCCTCATGAAGTTGCCGATGTAGAGCCTGTTTTAGATTTGGTCACAATTCAGAATCCCAAGGACCATGAA___GCTTGGGAAACCCGCTACATGCTTTTGCTCTGtCTCTCCGTGACCTGC...AGTCCTACTTGATTGTCAGTGACAAGGCCCGAGATGCAGCTGCTGTCCTTGTGTCCAG|CCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAAGCGCCAC	out-of-frame	SYLIVSDKARDAAAVLVSs|rgesfahvgntririglpahkap	.
TALL038	CLPTM1L	NDUFS6	-/-	+/+	5:1331802	5:1814340	splice-site	splice-site	inversion	upstream	upstream	1	0	0	208	1136	low	.	.	.	CTTATACTTCCTGGCGCTGACCTTCTTTGTCGCAGCGTTCCAT___CTTCTCTTTGATTTCCTGGCCTTTAAAAATGACATCAGTTTCTGGAAGAAGAAGAAGAGCATGATCGGCATGTCCACCAAGG|TGAATGAAAACTTTGCCATTGATTTGATAGCAG	in-frame	LYFLALTFFVAAFHLLFDFLAFKNDISFWKKKKSMIGMSTK|vNENFAIDLIA	.
TALL038	UVSSA	CTBP1	+/+	-/-	4:1355245	4:1216205	splice-site	splice-site	inversion	downstream	downstream	0	1	0	56	470	low	.	.	.	GGGACCCACGGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCGCAGG|GTCGCGTGGGGCAGGCAGT...GGAGGGCCGGATCCGCGGCGCGGCCCTGGATGTGCACGAGTCGGAACCCTTCAG___CTTTAGCCAGGGCCCTCTGAAGGATGCACCCAACCTCATCTGCACCCCCCATGCTGCATGGTACAGCGAGCAGGCATCC	out-of-frame	GTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGERRR|vawgrq	.
TALL038	UVSSA	CTBP1	+/+	-/-	4:1366431	4:1228343	splice-site	splice-site	inversion	downstream	downstream	1	0	0	44	405	low	.	.	duplicates(1)	CTCAG___AGGGCCTGAAGGTGCAGGAGAACGAGGACAACCTTGCTCTCATCCACGCCGCCCGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAG___CGCTTCACCCGCGTC...GAGAAGGAGGGGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTATG|GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCC	out-of-frame	EKEGYEPHIPDHLRPEY|gpergcggpdvphhhshqggpgevqs	.
TALL038	UVSSA	MAEA	+/+	+/+	4:1355245	4:1327627	splice-site	splice-site	duplication	downstream	upstream	0	1	0	56	81	low	.	.	duplicates(4)	AGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|AGCTGCCTGGAGTTCAGCCTCAGAATCCAGGAGTTCATTGAACTCATCCGGCAGAATAAGAGACTGGACGCTGTGAG___TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAGAAGTCTTCCACTTCTCACAAGCCGAG	in-frame	RKYKELDIEPEGGERhR|SCLEFSLRIQEFIELIRQNKRLDAVslcflsvkmikscarepkksstshkp	.
TALL038	UVSSA	MAEA	+/+	+/+	4:1366431	4:1339074	splice-site	splice-site	duplication	downstream	upstream	1	0	0	44	202	low	.	.	duplicates(3)	CTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG___ACAGAAGCCCTGGGGGATGCGGAGGAAGATGAGGACGATGAGGACTTTGTGGAGGTCCCTGAGAAGGAGGGGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTATG|TCTCTGCTTTCTATCCtTCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAGAAGTCTTCCACTTCTCACAAGCCGAG	out-of-frame	ELELVLRKYKELDIEPEGGERhRTEALGDAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEY|vsafypsr*	.
TALL038	DDX5	BTF3	-/-	+/+	17:64503996	5:73504346	splice-site	splice-site	translocation	upstream	upstream	0	1	0	9274	7065	low	.	.	duplicates(1)	ATTCAAGCTCAGGGATGGCCAGTTGCTCTAAGTGGATTGGATATGGTTGGAGTGGCACAGACTGGATCTGG|GCaGTGGATGGAAAAGCACCACTTGCTACTGGAGAGGATGATGATGATGAAGTTCCAG...AATTGAGTCAACTTCTGAAGATAAAACCTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACTGCTTTTTAAGAAATTTTTGTTTATGGATCTGATAAAATCTAGATCTCTAATATTTTTAAGCCCAAG	out-of-frame	IQAQGWPVALSGLDMVGVAQTGSg|qwmekhhlllermmmmkf	.
TALL039	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	23	21	9	98	101	high	.	.	duplicates(26),low_entropy(3),mismatches(1)	CTGCGGTACCCTGTGCTGGTCACCCCAGTTCGGGTCGCCATCTCTCTGGTCTTAATTTGGGTCATCTCCATTACCCTGTCCTTTCTGTCTATCCACCTGGGGTGGAACAGCAGGAACGAGACCAGCAAGGGC...CTGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGG...GTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTCTGGGCCCGAGTGGGCTGAATCCCATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGACGGTGGGACAGACGGGGATGCGTGCACATGTGTGTGCATGGGTGCATACGTGTAGGGACGTGCATGACCTCTGAGCAAGGCAGAGGGTATTGAAGAAAGCATTGGCCTCTCACTCCCTCATGGGTTCTGCAGGATGAAGGAAAGGAAAGGAAAAGACAGAGAAAGGAAGGAAATAGCTTTTCATGAGCACCTACTGTGTACCAGGTGCTTCCCTGGC	out-of-frame	WKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL039	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	7	9	6	61	77	high	.	.	duplicates(11),low_entropy(3)	CTGCTTTCTCCTGCCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...TTTTATTTGCATCTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCG...___...CGCTG...___...CGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCC...AATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGC	.	.	.
TALL039	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	5	3	180	734	medium	.	.	duplicates(6),low_entropy(1)	AGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG___...ACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL039	SERF1B	SMN2	+/+	+/+	5:70026515	5:70065965	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	3	180	561	low	.	.	duplicates(2)	GCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQs|ml*	.
TALL039	PTP4A1	PNRC1	+/+	+/+	6:63572719	6:89083753	splice-site	splice-site	deletion	downstream	upstream	0	2	1	445	766	medium	.	.	duplicates(1)	CGCCGCCACCGCCGCTCCGCCACGACCACCGCCGCCTCCTGCCCTGCAGCCACCGCCACCGCCTGTGTCGCCGCCGCCTCGGGACCGGCTGTATGATTAGGCCACAATCTTCAATGAGTAAACATATTCCT|GTTTTAAAATCAAAGATGGGAAAATCGGAGAAAATTGCCCTTCCCCATGGCCAGCTTGTTC...AAACAGACAGAAAAGCAAATATAACTTGCCACTAACCAAGATCACCTCTGCAAAAAGAAATGAAAACAACTTTTGGCAGGATTCTGTTTCATCTGACAGAATTCAGAAGCAGGAAAAAAAGCCTTTTAAAAATACCGAGAACATTAAAAATTCGCATTTGAAG...GATGGGAAGCACTGTTGAAAATTCCAACCAAAACAGGGAGCTGATGGCAGTACACTTAAAAACcCTCCTCAAAGTTCAAACTTAGATTTCAGATTTCAGTATGTGTGTAAAACATAATTTTTCCCATATCCC	.	.	.
TALL039	BCL11A	SLC2A4RG	-/-	+/+	2:60553216	20:63740377	splice-site	splice-site	translocation	upstream	upstream	1	0	1	126	65	medium	.	.	duplicates(2)	AATTCATCTTCCCTGCGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAAAAGGCACTGATGAAGATATTTTCTCTGGAGTCTCCTTCTTTCTAACCCGGCTCTCCCGATGTGAACCGAGCCGTCGTCCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCCCCGCcGCCCACCAcGTCTCGCCGC...CCCCAGCACTTAAGCAAACGGGAATTCTCGC|GGCTCTTCCGTGGGCGGCGGCTTCGCGGGCTTGGAGTTCGCGCGGCCGCAGGAGTCGGAGCCGCGGGCCTCGGACCTGGGGGCCCCCCGGACGTGGACGGGG	out-of-frame	PQHLSKREFS|rlfrgrrlrglgvraaagvgaaglgpggppdvdg	.
TALL039	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	10	0	0	528	81	low	.	.	duplicates(11),mismappers(3),mismatches(1)	AAAAAAGCAACAGAAGCAAATGAGAGTGCCTGGGAGTGGTCATTGTGGGGCCTTCCCGTTTGTGTGACCCAGGTCATGTCCCTCCCTAAGCCCTGGTCTCTCTTGCCTCCTGCAGGGCTGGTGAATTACC...GCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAG...GCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGC	.	.	.
TALL039	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	3	4	2	48	17	low	.	.	duplicates(1),low_entropy(1)	CTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCG...ACATATGGAGTCAGACCTTTGTTTAAAGCAATGACAGAAGATGGATTTTTGGCTGTATGTTCAGAAGCTAAAG___GTCTTGTTACATTGAAGCACTCCGCGACTCCCTTTTTAAAAGTGGAGCCTTTTCTTCC	.	.	.
TALL039	TIMM23B	AGAP6	+/+	+/+	10:49970414	10:49987293	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	5	47	101	low	.	.	duplicates(3),mismatches(1)	CCGGGCTGCCCAGTCTGGGAAGTGAGGAGCGCCTTTTCCCGGCTGCCATCCCGTCTAGGAAGTGAGGAGCGTCTCGGCCCGGCCACCCATCGTCTGAGATGAGGGGAGCGCCTCTGCCCCGCCGCCCCGTCTG...|...CAGCCATGTGAAACTGAGTCAGTTAAACCTCTTTCCTTTAAAAATTACCCAACCTCAGGTATTTCTTTATCAGTGTGAAAACAGACTGCTATACTTTCTGATAATCATGCTTAAGCAATTGGGGAATTCAGAC	.	.	.
TALL039	TIMM23B	AGAP6	+/+	+/+	10:49958480	10:49989308	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	241	221	low	.	.	duplicates(3)	CTTAACACAGTAGCAGCTGGAACCATGACAGGCATGTTGTATAAATGTACAG|CTTTGGAGTTTAACCTTTCTGCCAATCCAGAGTCAAGCACAATATTCCAGAGGAACTCTCAAACAGAAG___CTTTGGAGTTT...ATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGAACTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG___GTTTCCACCGTGCACATTATGAAGAAAAGAAATGGA	in-frame	LNTVAAGTMTGMLYKCT|aLEFNLSANPESSTIFQRNSQTEALE	.
TALL039	PTGER4(3028),TTC33(17712)	TTC33	./.	-/.	5:40696763	5:40740484	intergenic	intron	deletion/read-through	downstream	upstream	0	4	0	16	11	low	.	.	duplicates(1),mismatches(1)	.	.	.	.
TALL039	EEF1A1P6	DNAH11	-/-	+/-	7:22511064	7:21844135	exon	intron	deletion/5'-5'	upstream	downstream	0	0	4	8669	0	low	.	.	mismappers(1),mismatches(6)	GTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCA...|...CCATGGCTGTG	.	.	.
TALL039	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21828097	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	1	1	21	12	low	.	.	duplicates(4)	CGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|TCTCCATCTTCTGACCCAACTGCTTTCTTGAAAGAGCCAGTATGTGAAACATCTACATTTAAGACATGTGAGTAAAAGATCTGGGAAATGCAACAGCGTATAGTCATACTGTTTAAGTAACAGATTAACCCAAGGCTCAGTGCCCAATTCAGACTTTACAGTATCATCTGTAATACTTTATACATCTGGATCATCCTGAA	out-of-frame	RLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|vsif*	.
TALL039	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853406	18:48101645	exon	intron	deletion/read-through	downstream	upstream	0	0	3	28	0	low	.	.	duplicates(1),mismappers(1),mismatches(3)	...CGAGTAGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCAC|...ATCAAGTAGAT	.	.	.
TALL039	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	110	61	low	.	.	duplicates(2)	CTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCGAGGATTTAGCTAGCTGGTGACGCCGGAGCACGAAGTTGTACAGGTAGCCAGCAG	out-of-frame	LGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
TALL039	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31583149	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	63	3	low	.	.	duplicates(2)	GGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___CTGGCAGGCT	.	.	.
TALL039	EEF1A1P6	CDCA7L(26033),RAPGEF5(146121)	-/-	./-	7:22511589	7:21972117	exon	intergenic	deletion	upstream	downstream	0	0	3	2981	0	low	.	.	.	CATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGaGACTTtATCAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCC...|...GCCTCTTCCGG	.	.	.
TALL039	NPIPB4	SMG1P4	-/.	-/.	16:21868190	16:21894921	intron	intron	deletion/read-through	downstream	upstream	0	0	2	52	1	low	.	.	duplicates(1),low_entropy(2),mismappers(1),mismatches(1)	.	.	.	.
TALL039	PFKFB3	RP11-563J2.2	+/+	+/+	10:6228218	10:6319087	splice-site	intron	deletion/read-through	downstream	upstream	1	0	1	24	7	low	.	.	duplicates(1),mismappers(1)	GCTGGAGCGGCAGGAGAATGTGCTGGTCATCTGCCACCAGGCCGTCCTGCGCTGCCTGCTTGCCTACTTCCTGGATAAGAGTGCAG___AGGAGATGCCCTACCTGAAATGCCCTCTTCACACCGTCCTGAAACTG...CCGGAGGTGCCCACGCAGCTGCCTGGACAA___CCTTTGCTAGGGCAAGCCTGTCT|ATGCTAGAGATTCAGCAGTAAACAAAATGAACTAAAAATAGGACTACCATTTGATCACCAATCCTGCTATGCAGTAT	out-of-frame	PEVPTQLPGQPLLGQACl|c*	.
TALL039	CTD-2337A12.1	CAST	+/+	+/+	5:96334307	5:96758680	intron	intron	deletion	downstream	upstream	0	0	2	3	5	low	.	.	duplicates(2)	GCCTATCACA...|...AAAGCCCCTCAAAGAAGAGCTTACTAACCAGAGCATGTTATTCTCTGTACCCCTGTAAAAGCACCGTGCTGCTCAGTCACCTCATCCCGTGACCTTCCTCTCATCGTCTTCCATACAGACCACATCACAGC	.	.	.
TALL039	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	1	0	22	6	low	.	.	duplicates(1),mismappers(1)	GCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAG...TCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGC	out-of-frame	QGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL039	SNRNP27	APPL2	+/.	-/.	2:69904706	12:105198042	3'UTR	intron	translocation	upstream	upstream	0	0	2	147	8	low	.	.	.	.	.	.	.
TALL039	SMARCAD1	SMARCAD1	+/.	+/.	4:94282377	4:94283548	intron	intron	duplication	upstream	downstream	0	2	0	0	4	low	.	.	.	.	.	.	.
TALL039	CACNA1C	FKBP4	+/+	+/+	12:2688229	12:2795142	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	8	354	low	.	.	mismappers(1),mismatches(3)	GAAAGAGATC...|...GACAGCCGAGGAGATGAAGGCGACCGAGAGCGGGGCGCAGTCGGCGCCGCTGCCCATGGAGGGAGTGGACATCAGCCCCAAACAGGACGAAGGCGTGCTGAAG___GTCATCAAGAGAGAGGGCACAGGTACAGAG	.	.	.
TALL039	CMIP	TXNL4A	+/+	-/-	16:81699801	18:79973856	splice-site	splice-site	translocation	downstream	downstream	2	0	0	150	1014	low	.	.	.	CCAGGCAAGAG___GTCCACTCATGCCTGCTGAGCGTGCGGGCCGGCAAAGATGGCTGGTTCCAGCTCTACAGCCCCGGAGGGGTGGCCTGCGACGATGACGGGGAGCTGTTCGCCAGCATG___GTGCACATCCTCAT...ATTCCTGCTCTCCCTGGCAGAAAACAAGCTGGGTCCCTGCATGCTCCTGGCACTGAGGGGGAACCAGACCATGGTGGAG|GAACAAGCACATCATGATTGACTTGGGGACTGGCAACAACAACAAGATTAACTG	out-of-frame	FLLSLAENKLGPCMLLALRGNQTMVE|eqahhd*	.
TALL039	RUNX1	MRPS6	-/-	+/+	21:34892925	21:34102835	splice-site	splice-site	inversion	upstream	upstream	1	0	1	186	92	low	.	.	duplicates(1)	GGACGAATCACACTGAATGCAAACCACAGGGTTTCGCAGCGTG___GTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAG___AATGCATACTTGGAATGAATCCTTCTAGAGACGTCCACG|GTTGTTTACATTCAGAGCTCTATCAATAAGAGGAATACATATTAC	out-of-frame	MASDSIFESFPSYPQCFMRECILGMNPSRDVH|gclhselyq*	.
TALL039	ZBTB25	CHURC1-FNTB	-/-	+/+	14:64502901	14:64923991	splice-site	splice-site	inversion	upstream	upstream	1	0	0	26	775	low	.	.	.	CTGGAACCTGACGGCACCTAGCATGTTTCAACAGTTAGCGCCCGCATCACCCCAAGGGATTAAATTTGGCATTCTTTCTCTTGAGACTCAAGTCCTGGCAGAGCTGTTGATCCTCTCACAAGATTCTGTCAT|GGTAATACCTGCCTGGAGAATGGATCTTTCTTACTGAACTTTACAGGCTGTGCAGTGTGCAGTAAGCGGGATTTTATGCTGATCACAAACAAATCCTTGAAAGAAGAAGATGGAGAAG	.	.	.
TALL039	MAD1L1	CHST12	-/-	+/+	7:2149152	7:2432563	splice-site	splice-site	inversion	upstream	upstream	0	1	0	95	75	low	.	.	.	CTGGACCAGACCATGGGCCTGAGCATCAG___GACTCCAGAAGACCTTTCCAGATTCGTGGTTGAGCTGCAGCAGAGGGAGCTTGCCTTGAAGGACAAGAACAGCGCCGTCACCAGCAG|GTTCCCAGCAGGATGCC...GAAGCTGAAGTGAGAGGCCCGGAGAGGGCCCAGCCCGCCCGGGGCAGGATGACCAAGGCCCGGCTGTTCCGGCTGTGGCTGGTGCTGGGGTCGGTGTTCATGATCCTGCTGATCATCGTGTACTGGGACAGCG	out-of-frame	LDQTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSr|fpagc	.
TALL039	MAD1L1	CHST12	-/-	+/+	7:2213212	7:2432563	splice-site	splice-site	inversion	upstream	upstream	1	0	0	114	75	low	.	.	.	GGCTCCCGGGCTCTTGGCCTTATCCCTAGGGTGTGTGGCTATTTGAGCGACTCTTTGTGGCACTGCCAGGGAGATGAGAGAGACCAACGGGCTGCTCCAGGAAGAGCTGGAAGGGCTGCAGAGGAAGCTGGGG...GAGGCTGCTGGCCAAGCTGCAAAGCTGGGAGAGACTGGACCAGACCATGGGCCTGAGCATCAG|GTTCCCAGCAGGATGCCCCGGCTCTGCAGGAAGCTGAAGTGAGAGGCCCGGAGAGGGCCCAGCCCGCCCG	out-of-frame	RLLAKLQSWERLDQTMGLSIr|fpagcpgsags*	.
TALL039	PTP4A1	JARID2	+/+	+/+	6:63572719	6:15517161	splice-site	splice-site	duplication	downstream	upstream	1	0	0	445	104	low	.	.	.	CCCGCCGCCGCCTGCATCGCCGCCACCGCCGCTCCGCCACGACCACCGCCGCCTCCTGCCCTGCAGCCACCGCCACCGCCTGTGTCGCCGCCGCtTCGGGACCGGCTGTATGATTAGGCCACAATCTTCAATGAGTAAACATATTCCT|GTGGTACAAGAGAACGAAAACGTCGTGTTCTGTCTGGAGTGTGCTCTGCGCCACGTGGAGAAACAGAAG	.	.	.
TALL039	SMAD4	MEX3C	+/+	-/-	18:51030623	18:51177576	splice-site	splice-site	inversion	downstream	downstream	0	1	0	66	89	low	.	.	.	GCCCGGTGCGTCCGCGGACCAGCAGCGCGGGAGAGCGGACTCCCCTCGCCACCGCCCGAGCCCAG|GTTGTAAAATTAAAGCACTGAGAGCCAAGACAAACACGTATATCAAGACTCCTGTTCGTGGTGAAGAGCCCATTTTTGTTGTCACTGGAAGGAAAGAAGATGTTGCCATGGCCAAAAGAG	.	.	.
TALL039	TFRC	ARRDC2	-/-	+/+	3:196082043	19:18008711	splice-site	splice-site	translocation	upstream	upstream	0	1	0	125	199	low	.	.	duplicates(1)	GGGATATCGGGTGGCGGCTCGGGACGGAGGACGCGCTAGT|ATACCGGGGAGACCACGACGCTGCCTCCTGGGCGCCATGAGTTCCTGTTCAGCTTCCAGCTGCCCCC___GACCCTGGTGACATCCTTCGAGGGC...GGGTCCCAGCACGCCGGGCAAGGAAGGTGTTCACTGTCATCGAGCCTGTGGACATCAACACGCCAGCCCTGCTG___GCACCTCAAGCGGGGGCTCGGGAAAAGGTTGCCCGATCCTGGTACTGTAACCGTGGC	.	.	.
TALL039	SMEK2	SRSF7	-/-	-/-	2:55615453	2:38748655	splice-site	splice-site	deletion	upstream	downstream	0	1	0	243	4226	low	.	.	.	GGATCACTACTCTTGGAATCAAAGATAAATCCAAATACTGCATATCAGAAACAAC|AGGTCACGGTCTAGATCACATTCTCGATCCAGAGGAAGGCGATACTCTCGCTCACGCAGCAGGAGCAGGGGACGAAG___GTCAAGGTCAGCATCTCCTCGACGATCAAGATCTATCTCTCTTCGTAGATCAAGATCAGCTTCACTCAGAAGATCT	out-of-frame	GSLLLESKINPNTAYQKQ|qvtv*	.
TALL040	DNM2	CARM1	+/+	+/+	19:10820089	19:10908039	splice-site	splice-site	deletion/read-through	downstream	upstream	22	26	12	314	113	high	.	.	duplicates(22),low_entropy(4),mismappers(5)	TTCCTACCCCCGGTTGCGAGAGGAGACAGAGCGAATCGTCACCACTTACATCCGGGAACGGGAGGGGAGAACGAAGGACCAG___ATTCTTCTGCTGATCGACATTGAGCAGTCCTACATCAACACGAACCATGAGGACTTCATCGGGTTTGCCAA___TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGAGCCATCCCCAATCAG___GGGGAGATCCTG___GTGATCCGCAGGGGCTGGCTGACCATCAACAACATCAGCCTGATGAAAGGCGGCTCCAAGGAGTACTGGTTTGTGCTGACTGCCGAGTCACTGTCCTGGTACAAGGATGAGGAG___GAGAAAGAGAAGAAGTACATGCTGCCTCTGGACAACCTCAAGATCCGTGATGTGGAGAAGGGCTTCATGTCCAACAAGCACGTCTTCGCCATCTTCAACACGGAGCAGAG|ATTTCTGTTCCTTCTACAACATCCTGAAAACCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGCGAGCGGACGGAGGAGTCTTCTGCCGTGCAGTACTTCCAG___TTTTATGGCTACCTGTCCCAGCAGCAGAACATGATGCAGGACTACGTGCGGACAGGCACCTACCAGCGCGCCATCCTGCAAAACCACACCGACTTCAAGGACAAG___ATCGTTCTTGATGTTGGCTGTGGCTCTGGGATCCTGTCGTTTTTTGCCGCCCAAGCTGGAGCACGGAAAATCTACGCGGTGGAGGCCAGCACCATGGCCCAGCACGCTGAG___GTCTTGGTGAAGAGTAACAACCTGACGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCATCTCGGAGCCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAGCTACCTCCACGCCAAGAAGTACCTGAAGCCCAGCG___GAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTG___GTACCAGCCATCTTTCCAT	out-of-frame	SYPRLREETERIVTTYIREREGRTKDQILLLIDIEQSYINTNHEDFIGFANAQQRSTQLNKKRAIPNQGEILVIRRGWLTINNISLMKGGSKEYWFVLTAESLSWYKDEEEKEKKYMLPLDNLKIRDVEKGFMSNKHVFAIFNTEQr|flfllqhpenlpgphpgavcvqradggvfcravlpvlwlpvpaaehdaglradrhlparhpakphrlqgqdrs*	.
TALL040	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	14	9	5	45	60	high	.	.	duplicates(7),low_entropy(2)	CTGTCTATCCACCTGGGGTGGAACAGCAGGAACGAGACCAGCAAGGGCAATCATACCACCTCTAAGTGCAAAGTCCAGGTCAATGAAGTGTACGGGCTGGTGGATGGGCTGGTCACCTTCTACCTCCCGCTAC...GGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACG	out-of-frame	GDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL040	MON1B	CTD-2300H10.2(65533),MON1B(20005)	+/+	./+	16:77191633	16:77170830	splice-site	intergenic	duplication	downstream	upstream	7	7	7	90	30	high	.	.	duplicates(9),inconsistently_clipped(1)	CGCCAACCACTG___...GGGGAAGTAATGGTATCCGGCCAATTGAGATTCGGAGTTAAAACAG___GGATGTGCAGATGGAGGTCGGAGGAGACACTGCTGCCCCGGCCCCCGGGGGCGCGGAGGACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGAAGGTGGAGGGGTTCACGCGGTCCCGCCGGATCCCGAAGACGAGGGCCTGGAGGAAACAG|GGATGCTGAGCTGCTGCAGGAAGCTCTTGAACATCAAGTTATGCCAGCAGAAAAAGACATCAGATTGGAAGAATGTGG...___GCAGATGAGCTGGTCTCAGAAATACTCAAGTCTCAAAATCTTTGGAACATATGCTTCCATATCAG___CAATTTTCAAGTTTGCCATACTTCTACCCAAAGATTCCACTGGCTTCCTGCCACCATCCTTCAGTCTAAAACTGTATCATGCTG	out-of-frame	MEVGGDTAAPAPGGAEDLEDTQFPSEEAREGGGVHAVPPDPEDEGLEET|gmlsccrkllniklcqqkktsdwknv	.
TALL040	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	12	1	53	53	high	.	.	duplicates(5),low_entropy(1),mismappers(3),mismatches(5)	AGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAG...GCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGG	.	.	.
TALL040	WDR7	NETO1	+/+	-/-	18:56816144	18:72783906	splice-site	splice-site	inversion	downstream	downstream	2	2	1	19	29	high	.	.	duplicates(1)	CTCCAACTTCCAGTAATATTGTGCAAGGACAGATTAAACAAG___CTGGAGTCACATCAGAAGCCGCGCAGACTATCACCACGGCTCCTGATGCCTCAGGGCCTGAAGCAAAAGTCCAGGAGGAAGAGCATGACCTTGTTGACGATGACATCACCACTG|ATTTACTTACGATTCTTGGACTATGAGATGCAGAATTCAAATGAGTGCAAGAGGAATTTTGTGGCTGTGTATGATGGAAGCAGTTCCGTGGAGGATTTGAAAGCTAAGTTCTGTAGCACTGTGGCTAATGATGTCATGCTACGCACGGGTCTTGGGGTGATCCGCATGTGGGCAGATGAGGGCAGTCGAAACAGCCGATTTCAGATGCTCTTCACATCCTTTCAAGAAC___CTCCTTGTGAAGGCAACACATTCTTC	out-of-frame	PTSSNIVQGQIKQAGVTSEAAQTITTAPDASGPEAKVQEEEHDLVDDDITT|dlltilgl*	.
TALL040	FOXN3	RN7SL714P(128274),RP11-1082A3.1(17194)	-/-	./+	14:89280950	14:98479938	splice-site	intergenic	inversion	upstream	upstream	2	1	1	61	8	high	.	.	mismappers(1)	CAGTGAAGGATATCTACAACTGGATCTTGGAACATTTTCCGTATTTTGCAAATGCACCTACTGGGTGGAAAAACTCAGTGAGACACAATTTATCATTGAATAAGTGTTTTAAGAAAGTGGACAAAGAGAGG...GTCAG___AGTATTGGGAAAGGGTCGTTGTGGTGCATAGACCCAGAGTATAGACAAAATCTAATTCAGGCTTTGAAAAAGACACCTTATCACCCACACCCACACGTGTTCAATACACCTCCCACCTGTCCTCAGGCATATCAAAG___CACATCAGGTCCACCCATCTGGCCGGGCAGTACCTTCTTCAAGAGAAATGGAGCCCTTCTCCAAG|GGATACCTTTTCCAGATTTTCTCAACCTATGCAACATTTATCTGAGAAATGGAGAGTGACTGAAGACAAGCACCAAGCATTATTCATCTACATCTTACCATGATTCATTTACATCTTACCATGTGCCTAATACAGAGTGGATGCTAACAAAACTGCATGGAAGCTGACAAGATATGAG	out-of-frame	QSIGKGSLWCIDPEYRQNLIQALKKTPYHPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFFKRNGALLQ|gipfpdflnlcniylrnge*	.
TALL040	FOXN3	RP11-1082A3.1(27386),C14orf177(169429)	-/-	./+	14:89280950	14:98542184	splice-site	intergenic	inversion	upstream	upstream	1	1	2	61	380	high	.	.	duplicates(1)	CAG___AGTATTGGGAAAGGGTCGTTGTGGTGCATAGACCCAGAGTATAGACAAAATCTAATTCAGGCTTTGAAAAAGACACCTTATCACCCACACCCACACGTGTTCAATACACCTCCCACCTGTCCTCAGGCATATCAAAG___CACATCAGGTCCACCCATCTGGCCGGGCAGTACCTTCTTCAAGAGAAATGGAGCCCTTCTCCAAG|ATAGACCTGTTTCCACTTCAAAAGGATGACCTGCGATTCAACAGCGGCCCAGCCCACATGTGGTCCTTGAGCTGAGCATCCaGGAACCAGAAGGAGATACTGTGTCCCCAGACAGAAAGGTACCCAAGATCCTGCAGAAGAGAGCACGTGAGGGTCAAGGCTGGGACAGCAATAACCTTTCCTCATCACCTGCCTGCACCCTTCCATGTTAACATACTGTGAACCGAGCAGAAGTGACAAAACCAATCCATCACCCCAGAGCCAACACAAAGAGGAATAGAGAGGTTAACAGAAATTGATGACATCCCCGCTGG	out-of-frame	QSIGKGSLWCIDPEYRQNLIQALKKTPYHPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFFKRNGALLQ|drpvstskg*	.
TALL040	FOXN3	AL163953.3	-/-	+/+	14:89280950	14:53687199	splice-site	splice-site	inversion	upstream	upstream	2	0	1	61	4	high	.	.	.	AAGAGCTGACCAACCTGAACTGGCTGCACGAGAGCAAGAACTTGCTGAAGAGCTTTGGGGAGTCGGTCCTCAGGAGTGTCAGCCCCGTCCAGGACCTGGACGATGACACCCCCCCATCCCCTGCCCACTCTG...GACAAAGAGAGGAGTCAG___...CAAAATCTAATTCAGGCTTTGAAAAAGACACCTTATCACCCACACCCACACGTGTTCAATACACCTCCCACCTGTCCTCAGGC...___CACATCAGGTCCACCCATCTGGCCGGGCAGTACCTTCTTCAAGAGAAATGGAGCCCTTCTCCAAG|CTTGGGGCCAGTCATCATCTTAAAGGCTCTGTGGCAGCTTGGACTTGAAGTAGGGTGCACCCGGAATTGACCAATACAAACAGTGGACTGCACTGGATTCTTCTTGTGCCCTGTCTCATATCCTCTTGTCCCACCTTTTCATAACAGCCATTGCCAT	out-of-frame	HIRSTHLAGQYLLQEKWSPSPs|lgpviilkalwqlglevgctrn*	.
TALL040	LCP2	RP11-1082A3.1(39119),C14orf177(157696)	-/-	./+	5:170270341	14:98553917	intron	intergenic	translocation	upstream	upstream	28	16	40	127	92	medium	.	.	duplicates(30)	CAGAAATGGCAATTAACTAGTATCATCACAAATGCTCCAGGCCTTTAGTCTTTCTCATGGTGATGCCTGGAGCAAAAAATGTGTTTACTCAAGACAGAGaCTATTCCGGgACCTTCTATT...CAGGCACATCGAGGGCCACAGAGCCTCTACAAACTGCACTGTCCCTATCACTGTGTGGGCAGGAAGAAGACGATTATGAAAGTCCCAATGATGACCAGGATGGGGAGGATGATGGAGACTATGAGTCCCCC...GCCTTTCCCCAACTCCAACTCCATGTACATCGGTAAGGGCCCGTTTCtGGATTTTCTGGCCCGAGCAGCCCAAAGGCAAGCTCGCCACTGCTGCATGGAAGGCTGATGCCCCAGCTTGCCCATGTAGCAGAAAGCTCTGGGTCTCGATATCTGCTCGGCTTCTTAACAGCTATGTGGCTTTGTACAAGTAACTCTGTCTCTCTGGGCCTCAATTTCCTCATCTGTGAAATAGGATAATAAATGTACAGACCACATAGGTTTCCTGTGAGGACTACTAAGACTGCAACCAATTCTTGCCTATGGTGGCTGATATCAGCATTGAACTACCACCTAAGGCTATTTGGCAGTTTCAACTCATTCTGCAGTTTACTCAGGTACTCCAAGAGTACTTTCCTGTTCCTCCCCATCgT|AAGAGCATCAGAAAAAATCCACCCTTGATCTTCAGAGACTCAGCCCTATGTGTCTCCCATGCTGCTATGTGACTTCAGGCTACAAAATGCAACTTCCACATGAGTCAAACTCTATGTCTCTACCCGGGGTCAACCCAGCCACGGAATAGGCCCACTTCAGCGGTTCTATGAGAAATAAATGAGTGCAAGGGCAGAGTGTTGTTGTAAAAGATATTTATACTCAAATGCCTTTTGGTATAACCTGCTCTCCAGTGCCCACTCCCCCTCATCACCCTGCACATGGCTACATCACACTTGCACTTTACCTGCTGGACACCTG	out-of-frame	PFPNSNSMYIgkgpfldflaraaqrqarhccmeg*cpslpm*qkalgldicsas*qlcgfvqvtlslwasisssvk*dnkctdhigfl*gllrlqpilaygg*yqh*ttt*gylavsthsavysgtprvlscssps|*	.
TALL040	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	10	9	71	38	medium	.	.	duplicates(11),low_entropy(1),mismatches(1)	CCAGGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCG...GCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAG?GGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGG...___...GAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAG...___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGGG	.	.	.
TALL040	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	8	3	207	487	medium	.	.	duplicates(4)	GCCGGCCATGCCGGCGGCTGTTGTCGGGCCTCCAGCGGGCGGGGCCGTTGGCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAGCTAATAATATAGAACAgAATGCTCAAGAG___AATGAAAATGAAAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL040	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	10	3	0	395	113	medium	.	.	duplicates(11),mismappers(1)	GTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTC	.	.	.
TALL040	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482902	17:4483881	intron	intron	duplication	upstream	downstream	0	6	5	182	121	medium	.	.	duplicates(4)	.	.	.	.
TALL040	RP5-1112D6.4	KIAA1919(2163),RP5-1112D6.4(4602)	+/+	./+	6:111278714	6:111273330	exon	intergenic	duplication	downstream	upstream	5	4	1	160	115	medium	.	.	duplicates(6)	ATCCAGTTCTGTGTCCAAGCACTCTATGAATCTTTACCCTTGTTGAAGAAATACTCAGAGACAGAAGCATTTAGAAAAGGAAAAGTTTACCTGCAAAGAGAGCAAGAGAATGACTGGCTTGCCTAATAAAAAAC___...CTTGAATTCCCATGTGTTGTTGGAGGGACCTGGTGGGAGGTAACTAAATCATGGGGGCAAGTCTTTCCCGTGCTGTTCTTGTGATAGTGAGGAAGTCTCACGAGATCTTTTGGTTATTATAAGAGGGAGTTTTCCTGCACAAGCCCTCATTTTGCCTGCTGCCATCTATATAAGATGTGATTTGCTGCTCCTTGCCTTCCGCCATGATTGTGAAGCCTCCCCAGCCATGTGGAACT|AGATGGGGTCTCACTGTGTTGACTAGGCTGGTTTTGAATTCCTGGCCTCAGGCGATCCTCCCGTCTCAGCCTCCCAAACTGCTGGGATTACAG___GTCCTGGGATGGATGGCCTGGTTCATCTGCATCAGAACTGGAAAAACAAAATCAC	.	.	.
TALL040	RARS2	RP11-156F23.2(10405),RN7SKP209(2367)	-/-	./-	6:87514428	6:87080866	CDS	intergenic	deletion	upstream	downstream	2	2	3	176	17	medium	.	.	duplicates(3),low_entropy(1)	CCACAGTCTGTTTCAATTCTTCAGCATCTTCTCAG___GTTCGACGAGGTGCTTTATAAATCATCTCAGGACTTTCAACCCAGGCATATCGTCAGTTACCTTCTAACTTTAAG___TCATCTTGCAGCTGTGGCACACAAAACACTACAAATAAAAGATAGTCCTCCTGAAGTGGCTGGG___GCCAGACTTCATCTTTTCAAAGCTGTCCGTTCTGTCCTAGCCAATGGAATGAAACTTCTTGGAATAACACCT|CCCCTTCCAGACTGAGAGTTGGAACATGTGGCACCATCTTCATTTGACAATTGGATAAACAGAAGTACAAAGCTTTGGTTGTATAGGAACAAAGAATGTGTATAGGAAAAGTGAGCATCTCCATTTCTGAGCTGCTTCTTTCTAATTCCAACTTCCTTCCAAATCTATGACGTTTTCACTTTATCTACAAAGAACTATTTCCCCATGGACACTAACAGAAAACaCTCCTTGAGATTTGCCCAGGTTGAAAACCC	out-of-frame	PQSVSILQHLLRFDEVLYKSSQDFQPRHIVSYLLTLSHLAAVAHKTLQIKDSPPEVAGARLHLFKAVRSVLANGMKLLGITP|plpd*	.
TALL040	NBEA	RP11-467L19.16(3015),NBEAP1(11175)	+/+	./-	13:35110978	15:20646463	splice-site	intergenic	translocation	downstream	downstream	0	2	0	7	2	medium	.	.	duplicates(1)	TGACAGTAGTGGCATTACACCTAAAGGATTAG|AGCCAAAGATTCCTGAAGACAGAGCTGATGCgATGTACTCAAGTGGGTCTCTGCCTCTCAGAGGTGGCCTTGgTCTTCAAGTTTCAGCAATTCTGGGAAGCCAAGGACACCTCCATCTCCTCCTCCCTGATCTGCAACTCATCTaAGA...ACTTTGCAGAACACAACATCATCTGGCACATGACCAGCCATGGTGTTTCACTTTCACAATTTCAGCTTCCTTCACTGATTGCAGCATAATCGTGGTTCAGCAGCCTCCAAGACCAGGGCTGATGTGGGCGGCT	out-of-frame	DSSGITPKGL|epkipedradamyssgslplrgglglqvsailgsqghlhlllpdlqli*	.
TALL040	MANBA	MCEE	-/-	-/-	4:102722871	2:71110122	splice-site	splice-site	translocation	upstream	downstream	2	0	0	44	123	medium	.	.	.	GTCACTATTGGGGAAACAGACAATATGTTCAATAGATAT___AGCTTTGATATTACCAACGTGGTCAGGGACGTGAACTCCATTGAGCTGCGTTTCCAGTCAGCGGTGTTGTATGCAGCACAGCAGAGCAAAGCTCACACTCGCTACCAGGTTCCCCCAGACTGCCCTCCACTTGTGCAGAAGGGTGAATGCCATGTCAACTTTGTTCGGAAG|GTGGATAATATTAATGCAGCTGTGATGGATTTG	in-frame	VTIGETDNMFNRYSFDITNVVRDVNSIELRFQSAVLYAAQQSKAHTRYQVPPDCPPLVQKGECHVNFVRK|VDNINAAVMD	.
TALL040	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	19	0	147	41	low	.	.	duplicates(11),low_entropy(2),mismatches(1)	TCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCAC	.	.	.
TALL040	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	6	2	2	22	21	low	.	.	duplicates(9),low_entropy(1),mismappers(1)	CCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTG?TTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___GGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACgGAATCAGGtGCTCTACAAGTGGCACTCAAACAGGC	.	.	.
TALL040	PTPRC	PTPRC(16277),MIR181A1HG(33933)	+/+	./+	1:198742020	1:198773560	CDS	intergenic	deletion/read-through	downstream	upstream	6	4	0	928	68	low	.	.	duplicates(8),low_entropy(2)	GAAGCCATTAGGTCCCGGGCTTTTCTTTGCTGGGAAACTTTTCATGACAACCTCCGTTTCATTACTTGTTGT___...CTCCCTTCCACTTATTTATGTTTCATAGTTTGCTTTAAAAAAATCATCTCAAAGAAAATATTATCTCTTGACTAGAAAAAAGAAAAAGCAACTGGAAGAGAGGTGACTCACATTCAGTTCACCAGCTGGCCAGACCACGGGGTGCCTGAGGATCCTCACTTGCTCCTCAAACTGAGAAGGAGAGTGAATGCCTTCAGCAATTTCTTCAGTGGTCCCATTGTGGTGCA|CTTGTTCTGAAGCCACGGGAACCTTGAGGTTACCTGCAGGGATAAAGAAGGCTCGCACAAGAATTAGATCTTCTCCTGCATCCTCTTTACTCTGCTGTGTCTTTTTGTTGAGACAGAGTCTCTCCCTCT	out-of-frame	lpstylcfivcfkkiiskkilsld*KKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVh|lf*	.
TALL040	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	3	3	0	99	21	low	.	.	duplicates(6),low_entropy(1)	CTGAGAAGCACCATTGATGCCGTGAGTGGGTGGAGATGAGGGGCTGGGGGCCTGGCTCACTCTCCCTGCCCCGCCCCACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAACTGTGAGACATGCACTTGCTACGAAACAGAAATTTCATGTTGCACCCT___TGTTTCTACACCTGTGGGTTATGACAAAG	.	.	.
TALL040	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	1	4	0	50	48	low	.	.	duplicates(1),mismappers(2)	GGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGACTATAAAATTTGCTGCAGCACATTATAATACAGAGATCTTGAAAA___GTATTGATAATGAGTGGAGAAAGACTCAATGCATGCCACGGGAGGTGTGTATAGA	.	.	.
TALL040	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	2	1	142	31	low	.	.	duplicates(5),low_entropy(1),mismappers(5)	GGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGG	out-of-frame	EVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL040	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	intron	deletion/read-through	downstream	upstream	0	4	1	10	9	low	.	.	duplicates(3)	AGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTG...AGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCTCTCTTCTTATGGCTCTGGACACACTGCTGAACTCTGACAGTACAAAGGAAATG___GGTTTTACGTGCAAGATCCAGGCTCTGCGTGATAAGCTGTGG	in-frame	RTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTAD	.
TALL040	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	1	1	26	20	low	.	.	duplicates(2),low_entropy(1)	AGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGG...GAGCgGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAAgTCCAAG___AAAAGaCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAA	.	.	.
TALL040	GSG2	ALOX15(10455),PELP1(17025)	+/+	./+	17:3726567	17:4652749	3'UTR	intergenic	deletion	downstream	upstream	4	0	0	181	7	low	.	.	duplicates(6),low_entropy(1),mismappers(5),mismatches(4)	CTGCGCTTTtAGCACCGAGcaTTACACTcGGGGAACGcGCTCTTAAAGAAAACaAGCCTCAAAAAACTCCACTACACCCcCAATGcGA...GTGGTTTTCTGTGACGTTTCCATGGATGAGGACCTGTTTACCGGTGACGGTGACTACCAGTTTGACATCTACAGGCTCATGAAGAAGGAGAATAACAACCGCTGGGGTGAATATCACCCTTATAGTAATGTGCTCTGGTTACATTACCTGACAGACAAGATGCTGAAACAAATGACCTTCAAGACTAAATGTAACACTCCTGCCATGAAGCAAATTAAGAGAAAAATCCAGGAGTTCCACAGGACAATGCTGAACTTCAGCTCTGCCACTGACTTGCTCTGCCAGCACAGTCTGTTTAAGTAAGCTAAATGTATCTTACTGCCCCGAAATG...CTGGTCTTGAAGCCTCTGGTGCTGTTTCAACCTCCATCCCCACAGGAGGGTGGAACTCCCATTCTCACAGGTTTCCAGTCAGCTTTTCAAACAAGAATTTTGTTTCCAAATGGAAACTGAAATATTTGTTGAAATGTTTAAATTTGCTGATAACAAATGTTCTGAAAGAAGTAAACTAGCCGGGCACAGTGGCGTGCGC|CTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAgAATGGtgTGA	.	.	.
TALL040	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	1	151	163	low	.	.	duplicates(2),low_entropy(1)	GGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCC	out-of-frame	IVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL040	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	156	163	low	.	.	duplicates(3)	GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAA...CCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTATCTCTGTTTCTG	in-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLI	.
TALL040	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	144	163	low	.	.	duplicates(3),mismatches(1)	CTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTT?CTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTG...TTTCTGTGGTATTTGCATACGTAGCAGATATAACCCAAGAGCATGAAAGAAGTATGGCTTATGGACTG___GTTTCAGCAACATTTGCTGCAAGTTTAGTCACCAGTCCTGCAATTGGAGCTTATCTTGGACGAG	out-of-frame	FEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL040	ANKRD36	RP11-734K23.9	+/+	+/+	2:97245640	2:97284044	CDS	splice-site	deletion/read-through	downstream	upstream	1	0	2	325	420	low	.	.	duplicates(1),mismatches(1)	GAAACATTAGCAAAAACGATAGCCTGTTATAGTGGACAGCTTGCTGCTCTGACAGATGAAAACACAACGCTCCGTTCCAAACTGGAGAAGCAAAGAGAGAGCAGGCAAAGACTGGAAACAGAAATGCAATCATACCATTGTAGACTGAATGCTGCTCGATGTGATCATGATCAAAGTCACTCATCAAAAAGAGACCAAGAGCTTGCTTTCCAGGGCACAGTAGATAAATGTCGTCACTTACAGGAAAATTTGAATTCTCATGTTCTGATTCTTTCTCTGCAACTTTCTAAAGCTGAGA|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAGGCAGGCGTGTGTG___TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCAT	out-of-frame	ETLAKTIACYSGQLAALTDENTTLRSKLEKQRESRQRLETEMQSYHCRLNAARCDHDQSHSSKRDQELAFQGTVDKCRHLQENLNSHVLILSLQLSKAE|sdgis*	.
TALL040	PRAMEF17(16142),PRAMEF20(1679)	LRRC38	./.	-/.	1:13408771	1:13503701	intergenic	intron	deletion/read-through	downstream	upstream	0	0	3	10	13	low	.	.	duplicates(1)	.	.	.	.
TALL040	CCDC7	CCDC7	+/+	+/+	10:32481782	10:32685970	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	15	46	low	.	.	duplicates(3),low_entropy(1)	GGGAGGAGCAGTGAAAGAGAAGGGAATGCTAAGAACTGCTGGGAGGATGACA___GAAAGGAAGGGCAAGAAATCCTGGGGCCTGAAGCTCAGGCAGATGAAGCAGGATGTACAG___TAAAAGATGATGAATGCGAGT...AAGCACTTAAAGAAGAACAAAAc___ATTTTGGAATCTCTTTTTAAG___TGGTTTCAGTGGCAGGTCAATCAGATGGAAGAA___GGATAAAGAAAATCGACCAGAAGCAGTGAAAAGTTGTGAAGCTCTGGCACAGAAA...CTCCCTTTATCATTTTTGTAAGGCAAGCCTGATGATGATGAACTCCCTGAGCTTTTGTCAGAGAAAGTATCACTCCTTCATTTTTGTAGACCAACTTTTCTGG|CTCATAATGAAGTACCAAATGAAAGGCTTGTAGTTGAGCATCAAGAATCATTGTCAAAAACCAAATTACAAgTAAAGAAACAAGAAACTTCTACAGAGCAACC...CCAAATGCAAGAAAAGAAAAAAATAACTCCTGGAAGGGAAAGGCGTAATA___CTCGTATTGTAGTACCAAATGAAAATGTGATTTCTGTTCATCAAGATTCAAAGTCAAAACTCCAAATGCAAGAAAAGAAAC	.	.	.
TALL040	MTND4P12	CTD-2410N18.4	-/-	-/-	5:134927093	5:134359113	exon	intron	deletion	upstream	downstream	0	0	3	44	0	low	.	.	mismatches(5)	CATTCTCAACaCCaTGACAAAACAcATAGCCTACCCCTTCCTTGTACTATCCCTaTGAGGCATAATTATAACAAGCTCCATCTGCCTaCGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTaGTAGTAACAGCCATtCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCT...|...GGGTTTTCCC	.	.	.
TALL040	MTND4P12	CDKL3	-/-	-/-	5:134927093	5:134359113	exon	intron	deletion	upstream	downstream	0	0	3	44	0	low	.	.	mismatches(5)	CATTCTCAACaCCaTGACAAAACAcATAGCCTACCCCTTCCTTGTACTATCCCTaTGAGGCATAATTATAACAAGCTCCATCTGCCTaCGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTaGTAGTAACAGCCATtCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCT...|...GGGTTTTCCC	.	.	.
TALL040	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	1	2	0	15	246	low	.	.	duplicates(1)	CCAGATCCAAGGGAACCTCAGAAATCCATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA___AAATGTGGTAAAGaACT...CGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACG...ATCGTCATTCTTCAGGATTGCCCTACTGGCCCTACCTCACAtCTtAAACTTTAAAAAACAGGATGGGCCACCAGCCACCTCCTCCAACTCAACAACATTCTATAACTGATAACTCCCTGAGCCTCAAGACACC	.	.	.
TALL040	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	2	228	120	low	.	.	.	ATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTC...GCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGG...GAGGCAGGAGGACATCAGAGGAAGACACACCAAAGAAAAAGAAGCACAAAGGAGG___GTCTGAGTTCACTGACACCATCCTGTCCGTGCACCCCTCTGATGTGCTGGACATGCCCGTGGACCCAAACGAAC	.	.	.
TALL040	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	1	138	7	low	.	.	.	TTCCTTGATGACAGCACAGCCAgCCAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACCTG	.	.	.
TALL040	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47997739	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	1	138	2	low	.	.	duplicates(1),mismatches(1)	CAAGCACAATATTCCAGAGGAACTCTCAAACAGATG___CTTTGGAGTTTAACCCTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACTCTCAAACAGATG___TTGTAGAAATAAGAAGAAGCAACTGTACAAACCAT___GTATCTACTGAGCGTTTCAGTCAACAATACAGCTCGTGTTCGACAATATTCCTTGATGACAGCACAGCCATCCAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|TTCATGCCGTGGAGGAAGTGGTGAAGGAGGTGGTGGGACATGCCAAGGAGACTGGAGAGAAAG___CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAG	.	.	.
TALL040	PLEKHG1(6242),MTHFD1L(15642)	MTHFD1L	./+	+/+	6:150849907	6:150876090	intergenic	splice-site	deletion/read-through	downstream	upstream	2	0	1	144	51	low	.	.	duplicates(2),low_entropy(1)	GTAACACTCACTGCGAAGGTCTGCAGCTTCACTCCTGAAGTCAGCAAGACCACGAACCCACCGGGAGGAAGAAACTCTGGACACATCTGAACATCTGAAGGAACAAACTCTGGACACACCATCTTTAAGAACTTTAACACTCACCGCAAGGGTCCACGGCTTCATTCTTGAAGTCAGCGAGACCAAGAACCCACCGGAAGGAATCA...GGACACATTTTGGTGACCACGAAGGGACCATTGACTATTGCCAAGCA|AGAAGTCATTCAGAATTCAAAAGAAGTTCTAAGTTTATTGCAAGAAAAAAACCCTGCCTTCAAGCCGGTTCTTGCAATTATCCAG___GCAGGTGACGACAACTTGATGCAGGAAATCAACCAGAATTTGGC	.	.	.
TALL040	BMPR2	NBEAL1	+/.	+/.	2:202526071	2:203190807	intron	exon	deletion	downstream	upstream	0	0	2	1	100	low	.	.	mismappers(1),mismatches(2)	.	.	.	.
TALL040	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	0	1	1	50	48	low	.	.	mismappers(2)	GGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGG...ACATAACAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGACTATAAAATTTGCTGCAGCACATTATAATACAGAGATCTTGAAAA___GTATTGATAATGAGTGGAGAAAGACTCAATGCATGCCACGGGAG	.	.	.
TALL040	EEF1A1P13	TRIO	-/-	+/-	5:14652381	5:14377302	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	12	1	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	CTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGaGTGAAGCTCTTCCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGTGT...|...TTGCACTCCAGCCTAGGCGACAG	.	.	.
TALL040	EEF1A1P6	DNAH11	-/-	+/-	7:22510727	7:21880106	exon	intron	deletion/5'-5'	upstream	downstream	0	0	2	1176	2	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(14)	GCAAAAATGACCCACCAATGGAAGCAGC?GGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTG...GCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGC...|...CTcTCTcTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACCC	.	.	.
TALL040	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87036400	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	0	2	0	56	18	low	.	.	duplicates(2),mismappers(1)	GAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTtAGCCCTGAAGAcAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTTTCTATCAACACCACGAGAGAAACACACCCTCCAGCCTGGGTCCCAGAATGAGGCAG___CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTGGACATTGTGAGGAACATCCAGCTCTGTGGACGTTGGGGGTAAGAGAGCAGG	out-of-frame	SLLPVINTMLQLSPEdKGKLAAVAQ|gfyqhherntpsslgprmrqptgllqyvcelsldiqgqcqplqplghceehpalwtlgvreq	.
TALL040	ZNF302	SPTA1	+/+	-/-	19:34684993	1:158612549	CDS	intron	translocation	downstream	downstream	0	0	2	62	19	low	.	.	duplicates(1)	CAGAGCAtTCACACGGGAGAGAAACCGTATGAATGTATGAACTGTGGAAAGTCTTTTAGTCGTGTGTCCCTTCTCATTCAGCATCTAAGAATTCATACGCAAGAAAAACGCTATGAGTGcCGTATATGTGG...|...ATTCAAAGAGCATTTATTGAATGCTTACTATGTTCCAGGCATGAGGAGTGCAAACTTTAGTAAGAaACAGTCCCTAAATTCAGGTGTAGTGGGGAAGACAGAACTTTACAAGTTAAAAACACTGTAACAGAA	.	.	.
TALL040	PFKFB3	RP11-563J2.2	+/+	+/+	10:6226365	10:6254178	splice-site	intron	deletion/read-through	downstream	upstream	0	1	1	17	1	low	.	.	.	AGGAGATGCCCTACCTGAAATGCCCTCTTCACACCGTCCTGAAACTGACGCCTGTCGCTTATG___GCTGCCGTGTGGAATCCATCTACCTGAACGTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAG___GATGC...GGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGaTcAAGAGTGGAATTCCTGGAAGGGcCCCTGAGCCACCAGTCCAGCCCCCTG...CCATCTGTCTTTCAAGCTCTGCCTCAGAAATGGCAATTCAAGGCTGATTTTCTCCTTGAATGCACTCTCTCTGTGAAAGAGGCTTTTCACCAAGAATGTGGTGCTGGTGTTTCTCTTGCCAATGGGCTAAAC	out-of-frame	EHVASTSAALPSCLPPEVPTQLPGQ|eiksgipgrapeppvqpp	.
TALL040	PPM1A	RNF130	+/+	-/-	14:60249677	5:179967010	splice-site	splice-site	translocation	downstream	downstream	1	0	0	71	865	low	.	.	.	CCTCCTCCGCCCCTTCCCCAGCCTGACCTGGCCCGCCGCTGCAGCGGTGACCCCTCCCCCGGCTGCCGCCGTCGCCGCCGCGGTGACCCCCTCCCCGGCTGCCGCCGCCGCCGCCTCGGCCGACCAGGGACCTGCCCGCCTGCGGCTGCTCCGG|CCGAATTTGCCATGTACTGATAACGTAGCATTCGATATGGAAAGGCTCACCAGAAC	.	.	.
TALL041	TCF7	SPI1	+/+	-/-	5:134116033	11:47375729	splice-site	splice-site	translocation	downstream	downstream	66	38	155	1158	1084	high	.	.	duplicates(133),low_entropy(9),mismatches(3)	CAGGATGAAGGCGAGGAGCAGGACGACAAGAGCCGCGACAGCGCCGCCGGTCCCGAGCGCGACCTGGCCGAGCTCAAGTCGTCGCTCGTGAACGAGTCCGAGGGCGCGGCCGGCGGCGCAGGGATCCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|CCATCAGAAGACCTGGTGCCCTATGACACGGATCTATACCAACGCCAAACGCACGAGTATTACCCCTATCTCAGCAGTGATGGGGAGAGCCATAGCG___ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCaGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCT...___GCCCCCTCCACATCCCGCTTCGCCTCCCTCCAGGACTCCACCCCGGCTCCC	in-frame	QDEGEEQDDKSRDSAAGPERDLAELKSSLVNESEGAAGGAGIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|PSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPrPGLLPGETGSKKKIRLYQFLLDLLRSGDMKDSI	.
TALL041	TCF7	SPI1	+/+	-/-	5:134116033	11:47375732	splice-site	splice-site	translocation	downstream	downstream	28	33	159	1158	1084	high	.	.	duplicates(115),mismatches(3)	CAGGGATCCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___...CAGAATTGGCCAAG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|CAGCCATCAGAAGACCTGGTGCCCTATGACACGGATCTATACCAACGCCAAACGCACGAGTATTACCCCTATCTCAGCAGTGATGGGGAGAGCCATAGCG___ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCaGGCCTGGGCTCCTGCCTGGGGAGACAGGTGGGGCACCTGGCCCTCCACCCTGGCCCCGACCCTGGCCGTGTCTGTGCCCTGaCC...GGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGATGGCGCGCGCGCTGCGCAgCTACGGCAAGACGGGCGAGGTCAAGAAGGTGAAGAAGAAGCTCAC...CCGCCGGGCCCCGCCAGGCCTCCCCGCTGGCCATAGCATTAAGCCCTCGCCtGGCCCGGACACAGG	in-frame	rigqGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|qPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPrPGLLPGETGGAPGPPPWPRPWPCLCPd	.
TALL041	TCF7	SPI1	+/+	-/-	5:134116033	11:47360040	splice-site	splice-site	translocation	downstream	downstream	4	4	95	1158	1682	high	.	.	duplicates(52),mismatches(2)	CAGGGATCCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGG	out-of-frame	GIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|titgtstpttctassrasprttsrssracsprscssstatwswsrctssippwchpipvlatrsptcpgcassthpcpqpspaqmrrrasgraphwrcltar	.
TALL041	TCF7	SPI1	+/+	-/-	5:134116086	11:47375732	splice-site	splice-site	translocation	downstream	downstream	0	4	159	58	1084	medium	.	.	duplicates(78),mismatches(3)	CAGGGATCCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTGGTAAGTGGACCCCGCAGCCAGTGCCGCCCTGTGCTTGCAGCCTCCTTGACCAG|CAGCCATCAGAAGACCTGGTGCCCTATGACACGGATCTATACCAACGCCAAACGCACGAGTATTACCCCTATCTCAGCAGTGATGGGGAGAGCCATAGCG___ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCC...AAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGATGGCGCGCGCGCTGCGCAgCTACGGCAAGACGaGCG	out-of-frame	GIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLvsgprsqcrpvlaaslts|shqktwcpmtriytnakrtsitpisavmgraiatitgtstpttctassrasprttsrssracsprscssstatwswsrctssippwchpipvlatrsptcpgcassthpcpqpspaqmrrrasgra	.
TALL041	TCF7	SPI1	+/+	-/-	5:134116086	11:47375729	splice-site	splice-site	translocation	downstream	downstream	1	0	155	58	1084	medium	.	.	duplicates(75),mismatches(3)	CAGGGATCCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG...GACCCCGCAGCCAGTGCCGCCCTGTGCTTGCAGCCTCCTTGACCAG|CCATCAGAAGACCTGGTGCCCTATGACACGGATCTATACCAACGCCAAACGCACGAGTATTACCCCTATCTCAGCAGTGATGGGGAGAGCCATAGCG___ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAG	out-of-frame	PRSQCRPVLAASLTs|hqktwcpmtriytnakrtsitpisavmgraiatitgtstpttctassrasprttsrssracsprscssstatwsw	.
TALL041	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	7	7	5	62	55	high	.	.	duplicates(17),mismappers(1),mismatches(3)	GAAGAAATCTCCCCCTCGGTACTTCTTGGCTGTTTGG___...GG?GAGAGAGCCTTTTGATCATCTTGCGGGGC?GGGGGGGGAAAGACTGATTTTTTTTTTT?GTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCG	.	.	.
TALL041	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	2	3	5	124	164	high	.	.	duplicates(1)	.	.	.	.
TALL041	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	11	30	13	197	79	medium	.	.	duplicates(28),mismappers(1),mismatches(5)	CCCCACGGCAGTCCGGTGCGCCAAGGGAATGGATTGCCCTACGCCAACACCTGGAGGACTGTGGGTGTAAGGCGTCCAAGAAGAAAGCTCAGATCTGCCTACAGCAG___ACCTCCCAGTGCCAAGTGTATAAGCG...CGGGGCGTCCCTTCTCTTCTCTCCTCCTTGAGCAGGGAGACCATCGGGGTGCAACCTGGTTGGGGCGGGGAGGAGGTGCAGGGCCTGGCCAGAGCGGGCCTGGCCACGGGCAAGGGACAGCGACCCCCGGGCCAGGACAGGTGAGAGCGGCGCAGGCCCGGGCCCGGCGTGGCGGAGGTGCGCGTGAGCGGCCAGCAGAGGGCGCCAGAGAGCCAGGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCC...CCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAG	.	.	.
TALL041	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	6	4	241	435	medium	.	.	duplicates(11),mismatches(2)	GCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCA...TCTGGACCACCA___ATAATTCCCCCACCACCTCCCATATGTCCAGATTCTCTTGATGATGCTGATGCTTTGGGAAGTATGTTAATTTCATGGTACATGAGTGGCTATCATACTGGCTATTATATG___GG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL041	SPNS3	RP13-580F15.2	+/.	-/.	17:4482892	17:4483872	intron	intron	duplication/3'-3'	upstream	downstream	2	3	5	124	164	medium	.	.	duplicates(1)	.	.	.	.
TALL041	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	7	2	0	290	58	medium	.	.	duplicates(2),low_entropy(1),mismappers(2)	CTTTTGAATGCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGA	.	.	.
TALL041	ARHGEF3	CNTNAP2	-/-	+/-	3:56731597	7:147842433	3'UTR	intron	translocation/5'-5'	upstream	downstream	0	1	2	5	22	medium	.	.	.	CTAAAAGAAGCCAAGATAGCAATATCTATCGAGTATCTAACATGATACTCGGTGAAACAAGCAGGTAACTTCCTTCCCCTATGGAGCTTGCATTGTGATGGAGGAGAAAGATGATAAACAAATGAATACTCtAGGTGTTGTTAAGAAAACTTAAAA|TACATGGAATTAAAAATTATATTATTAACATAGAATATGTGGAAATAAATATAACACTGTGATTCACAGAACTGGCTGTACTATCTTATGAATCTGCAACAAATTGTCTGTATCAAAATTTCTTAGTCTGTAAGGGACTAATTGCTTATATGTGTCTCTCACGAAGTTTGGAGATAATGCTCTCCTCTGATCACACAGTTGTTACTTACTACCTATGTGACCTTTGGTAAAGTATTTCACTTGGGTGTTAgTTTCCTTATCTGCAAAATGGGAATAATCATGTATCTAGTTTTTGTGGTTGTGAAG	.	.	.
TALL041	NAA16	NAA16	+/+	+/+	13:41376075	13:41373463	3'UTR	intron	duplication	downstream	upstream	1	1	1	126	17	medium	.	.	duplicates(1)	AAAGCTGAATTGAGATCAGGGTTTCTTTTCCAGGtTGCATTTTAATATACGTATGAAATGAAATATTTGGTTAGGATTTTTAAATGGCATATTCTGTAAGCTTATTTTGTTCTTTACCCGACCTGCCAATTT...CAACCCCACTGTATTATTTTCTTTAGATTCTGATTTCAGGATCTGTGCTTTGATTCCTTGTCTGTTTTATCGTATATTTGCTTGCTTTTTAATTAAAGCACATCAGTTTTAAAGTGTTAACTATATGTTAAC...GCCCAGACTGGCGGATCACCTGA|GGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCATAAAGGGTTTTCAGTAGGTTTTTTTTTTTTCAAAGGACAGATCAAAAACAAAAAATCCAAATGTTTTTGTTTTTATAGTGTCTAATCATAGTAATCTTCC	.	.	.
TALL041	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	3	3	1	89	9	low	.	.	duplicates(5)	CTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGTAAATTATAACAAAACCCAATGGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCCCTGTCATCGAGGGAGTTTTTGTGCTGGTAAAGATGATGACTGCCCTGGTGCAGGGCCCGTGTAGCCCAACATGTCTAGTCCGTGGCGGGCTCTTACTGGGGATGAGGGGCCTCCAGGAGGAGCAGGCCTGGGCACAG	out-of-frame	SAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL041	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	7	0	35	24	low	.	.	duplicates(4)	AAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCAC	.	.	.
TALL041	LATS2(16772),RPS12P23(15999)	SAP18	./+	+/+	13:21078319	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	4	2	1	64	2560	low	.	.	duplicates(5)	AGGGCAGGCCCTGGTAGTCAGCTAGGGAAAGCTCTGCCAACATCGGGATCCTAAACAACAGGAGTTCACTCCTCTCACACTCATGGAGGCTGGAAATCCGGAACCAAGGT___CCTCTCTGGACCtCTGCCTGCAAGCCCGGCCCACACATCTTGGACCCAGGCTGGAGACACAGACAGCCAGGTGgTGATGCCCACGCGCAGCTCCAAGACCCCGGGGAGCCTCCGCCAGGCCGGAACCTGCGCCAGGCTTCTCTGGAACCTTCTCTCCAGGACGCTCTTCTGCGGTTACTGAAAAAGGGAGTCTACATGAATTAATAAGTGAAG|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTTGCAGATCTACACTTG___GATGGATGCAAC?TTGAAAGAACTGACAAGCTTAGTAAAAGAAGTCTACCCAGAAGCTAGAAAGAAGG	.	.	.
TALL041	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	6	0	0	1073	86	low	.	.	duplicates(1)	CCAGAACGAAACCTCAGGAAGCCAAGTCCCCTGAAGCATATGTAGCCCTGAATGACGTGGCCTTTGTTTTGTCTTTTGCATCTAGGTCTCCAGTCATGTTCCATACCCTGTAGCGTTACATGTAAATATAcTC...AGGTGAAATAACTCATCAGTCAGCATCCACTCTAGCCTGAGATTTCACATCACTCCCTTAAGTCTGAAATAACATTCACAAAGATTTCTGCAGGAGCCAAATTTGGTTGGTGGTGTTGTCACAGTGAGGCTCTTTGGGCTGTGCGGCACCT...GTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGC	out-of-frame	vfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqis	.
TALL041	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	1	1	3	20	11	low	.	.	duplicates(2),mismappers(2)	AAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCAC?GAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCC?GCTGCGGTGGCTTATGCCTGT?ATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAACACGGGACTATGAGGATGTGAATGAAGAAG	.	.	.
TALL041	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47995511	splice-site	splice-site	deletion/read-through	upstream	downstream	3	1	1	150	9	low	.	.	duplicates(5)	CGACAATATTCCTTGATGACAGCACAGCCAgCCAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|CCATTGCTGAAGCCATAAAGAAAGCCCAGGAGTCAGGGGACAAAAAGATGAAGGAAATCACCGAGACAGTGACCAACACAGTCACAAATGCCATCACCCATGCAGCAGAAAGTCTGGACAAACTTGGACAGTGAGTGCACCTGCTACCACGGCCCTTCCCCAGTCTCAATAAAAAGCCATGAC	.	.	.
TALL041	CTGLF12P	FAM25C	-/-	-/-	10:48012276	10:47997739	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	1	150	1	low	.	.	duplicates(1)	CGACAATATTCCTTGATGACAGCACAGCCAgCCAGCATTATCTTACAATGACAATAATATC___TGTGACCTTGGAGATACCTCATCATATCACACAAAG___AGATGCAGATAGATCTTTGAGCATACCTGATGAACAGTTACACTCATTTGCG|TTCATGCCGTGGAGGAAGTGGTGAAGGAGGTGGTGGGACATGCCAAGGAGACTGGAGAGAAAG___CCATTGCTGAAGCCATAAAGAAAGCC	.	.	.
TALL041	DNAH11	EEF1A1P6	+/+	-/+	7:21717789	7:22510719	CDS	exon	deletion/5'-5'	downstream	upstream	0	0	5	1	1382	low	.	.	duplicates(1),low_entropy(1),mismatches(3)	TGTGGCCAGTTG...|...CACGAACAGCAAAGCGACCCAAAGGTGGATAGTCTGAGAAGCTCTCAACACACATGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAACGGCGATCAATCTTTTCCTTCAGCTCAGCAAACTTGCATGCAATGTGAGCCGTGTGGCAATCCAATACAGGGGCATAGCCGGcGCTTA	.	.	.
TALL041	TAF4	CDH4	-/-	+/-	20:62005048	20:61571340	exon	intron	deletion/5'-5'	upstream	downstream	0	0	4	5	12	low	.	.	duplicates(2),mismappers(2),mismatches(1)	GTGAGTCTGCAGAGCACAGCCAGTGGGATCCAGGGCATCCAATCCATTGCCTGCACCCTGAAGCCTGTGGAGGCAGAACCCAGGCTTCTCCCTGATTCGATGACAGGCTCCCTGCACCGCAGGGCCTGGCCCGGGCATTTGATGGCAGGTTCCCTGCaCCGC...GCCTGAGCTGCCTGAGGCTCTTCCTGTCCgGTGTGGGTGTTCCTGTTTCGTTGGAGACATGTTTGCATTATAGGCCGCTTCCCCAGGTCCCCACACATGT...|...GTCaTTtTGCACCAACATCAGCCACGCACCTGAGTGTGCCTGAGGATGCCAGGGTCCTCCCAGACATCAAAAGGCTGTGGAAGGACCAGGGTCCAAATTCTGTTTCAGACCACTCCTAAGGGAAACACCACAGAGAACAAAAGACCAATGCATCCTCAAAGCCGGTGTCCCTGGAGGAAGAGGCTGGACACAGG	.	.	.
TALL041	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	1	102	223	low	.	.	duplicates(5),mismappers(1),mismatches(1)	GTGCATTTTCCCATTTTTTTCAACAGGAATGTCTAGAGACATTATTCCTGTTTTGCCACTGTATTTTTGGTGAATGTGTAGTAAGTAACTGGCCTCTTTAGTATCACAAAGCTGGATGAAGAAAATGTGGTAC...GGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___GGACTCTGAGATCATGCAAGAAAAGCAGAAGGCAGCTAATGAGAAGAAGTCTATGCAGACAAGAGAAAAGTGATGACTGGCTATTTGGAAAACCTGGGTGCTACTGC...AATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAGGTATTACTTGGCTTATGGCAGCATAACTCCTATCTCTGCCTTTGTCTTTGTGGTCTTCTTTTCTGTCTTCTTCCCTTCTTTTTATGAGGACTTTT	.	.	.
TALL041	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	2	1	1	234	24	low	.	.	duplicates(3),low_entropy(1)	GCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL041	EEF1A1P13	TRIO	-/-	+/-	5:14652189	5:14398658	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	21	0	low	.	.	low_entropy(1),mismatches(4)	GAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCCACACGGCTCAcATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTG...|...TTTTGCGATT	.	.	.
TALL041	ABI3	PHOSPHO1(5482),FLJ40194(11991)	+/+	./+	17:49220287	17:49236248	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	3	272	39	low	.	.	duplicates(1),mismappers(2),mismatches(1)	CTGGCCTCGGCCGG___CAGCGCCGAAGGTGTCGGTGGGGCCCCCACGCCCAAGGGGCAGGCAGCACCTCCAGCCCCACCTCTCCCCAGCTCCTTGGACCCACCTCCTCCACCAGCAGCCGTCGAGGTGTTCCAGC...|...TAAGCAAAACATCACAAGACCTGCTCTAGAGAAAGTGTTCCTGCCTCCTGCTAGGCAAGGTGATGCCCTAGGGGAAAGGAAGGAGGAGAAAG___ATGGGGTTTCGCCATGTTGCCCAGGATGATCTTGAACTCCCAGGCTCCTCCTACCTTGGCCTCCCAAAGTGCTGAGATTACAG...___ATACCCACAACAGGTGAAGGAGAGAAAGCAGTCCCACAGAC	.	.	.
TALL041	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31579204	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	2	155	14	low	.	.	duplicates(1)	CCAAGTTTGAGGAG___TTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|GATGTATGCATGGAGGTCGTATCTATCCAGTCTTGGGAACGTACTGGGACAACTGTAACCGTTG___CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGC...GTTAATAACAATGACATCTACCAGGTCACTCCTGTCTACCGCCTCGGCTCCAAC___GACAAGGAGATCATGAAGGAGCTGATGGAGAATGGCCCTGTCCAAG___CCCTCATGGAGGTGCATGAGGACTTCTTCCTAT	.	.	.
TALL041	LINC01225	TINAGL1	+/+	+/+	1:31540885	1:31583149	exon	splice-site	deletion/read-through	downstream	upstream	0	2	1	72	30	low	.	.	duplicates(5)	CAGCAGTTGAGCTGGTTCACCTTGGAATCTGACTCTGACAAGCAAAAGGAAGCAGAGTCTGATCATCTTTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___ACAGTGCTGAACCCAGGGGAGGTGCTTCCCACAGCCTTCGAGGCCTCTGAGAAGTGGCCCAACCTGATTCATGAGCCTCTTGACCAAGGCAACTGTGCAG...CAGAACCTGCTGTCTTGTGACACCCACCAGCAGCAGGGCTGCCGCGGTGGGCGTCTCGATGGTGCCTGGTGGTTCCTGCGTCGCCGAGG___GGTGGTGTCTGACCACTGCTACCCCTTCTCGGGCCGTGAACGAG	.	.	.
TALL041	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31583149	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	155	30	low	.	.	low_entropy(1)	GTTAGAGTGTGGGAAGTGTGACATGTAACTGAATCGGATGATGGCAACTTTCACTGGGCAGTGAAAG___TTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CACCTGCCAGGAGAACAGGCAGTG...GGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___...GGATGAGGGCATTCGCTACCGCCTGGGCACCATCCGCCCATCTTCCTCG...___ACAGTGCTGAACCCAGGGGAGGTGCTTCCCACAGCCTTCGAGGCCTCTGAGAAGTGGCCCAACCTGATTCATGAGCCTCTTGACCAAGGCAACTGTGCAG	.	.	.
TALL041	SYNJ1	AL162151.3(11154),AL162151.4(173791)	-/-	./+	21:32641962	14:98984625	CDS	intergenic	translocation	upstream	upstream	0	0	2	1	3	low	.	.	duplicates(1)	CAGCAACGCCGCTGCCGCAGAAAGACCCCGCCCAGtCCTTGGAGCCCAAGCGGCCGCCGCCGCCCCGCCCGGTCGCCCCTCCCACACGCCCGGCTCCCCCACAGAGACCTCCTCCGCCTTCAG___GACGC...|...GACTGAAACCAGCTCTAAGGATCCCCTAAAACACTGTTCTCTCTTTTGCCCCCGCGTGTCTCAAAGGGGTCCTCCATGGACGAGGTGACCCAGAGATGCAGCCATGGAGGGTAGAGCAAGAAGTGCAGCCTCA	.	.	.
TALL041	AC012501.2	GALNT13	-/+	+/+	2:153510977	2:153732769	intron	intron	deletion/read-through/3'-3'	downstream	upstream	0	1	1	15	24	low	.	.	duplicates(2),mismatches(1)	GGTTGGCGtGGTAGGAAGCAGACAGGAGAGCtGTGGTGTAGGTTTCAACTGAAGAAAATGTTTCTAGAAGGAAAGAGTTACCCAGCAAATACAAGCAGAAGGAGAGAGTGGGCCACTCTGTGGTATCTCGCAATGGAGCAGcCACTGTTGGACAAGAGCAGATTCACTGGAGAG|GTAACAAGTTGGAAGACTTTGGATCTCAAGAAAAGTGGATTTTGCCTCTACCGTAGAGATAG___ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAG	.	.	.
TALL041	CTD-2152M20.2	GOLPH3	-/-	-/-	5:32106124	5:32143880	splice-site	splice-site	duplication	upstream	downstream	0	2	0	11	180	low	.	.	mismappers(1)	CAAAGCTTCCTCTGTTCACAGCCTCTCACCGTCACTCACACTACCACCTGAGCTCTGCCTCCTGTCAGATCAGCAGCAGCATTAGATTCTCAC___...CCCAGATGGGATGCCTGGTTGCAAGAAAACAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAGAGGCTTGTGGAATGAGACGTAAAAGTCTATTAACAAGAAAG___GTAATCTGTAAGTCAGATGCTCCAACAGGGGATGTTCTTCTTGATGAAGCTCTGAAGCATGTTAAGGAAACTCAGCCTCCAGAAACGG...ACGGGAACGATTAGCTAAAAACCTGGTGGAAAAGGGTGTATTGACAACAGAGAAACAGAACTTCCTACTTTTTGACATGACAACACATCCCCTCACCAATAACAACATTAAGCAGCGCCTCATCAAGAAAGT	.	.	.
TALL041	CTD-2152M20.2	GOLPH3	-/-	-/-	5:32121495	5:32135686	splice-site	splice-site	duplication	upstream	downstream	0	1	0	3	243	low	.	.	.	GCCAGCTATACCCTGAAGCTGTTCAAGTCTTTCTCCCAATTACAGTCTTCATAAGA|GTAATCTGTAAGTCAGATGCTCCAACAGGGGATGTTCTTCTTGATGAAGCTCTGAAGCATGTTAAGGAAACTCAGCC...ATTGACAACAGAGAAACAGAACTTCCTACTTTTTGACATGACAACACATCCCCTCACCAATAACAACATTAAGCAGCGCCTCATCAAGAAAGTACAGGAAGCCGTTCTTGACAAATGGGTGAATGACCCTCAC	.	.	.
TALL041	BMPR1A	KIF20B	+/+	+/+	10:86843510	10:89758706	splice-site	splice-site	deletion	downstream	upstream	0	1	0	6	39	low	.	.	.	AGGAGGAATCAGAAAGTAACCTGCTCCCCACCCTTGGTGTGTAGTCCAGTTAGCAAG|GAAATACTGACAGCCCAGCTGACAGAGAAAGATAGTGACCTTCAAAAGTGGCGAGAAGAACGAGATCAACTGGTTGCAGCTTTAGAAATACAGCTAAAAGCACTGATATCCAGTAATGTACAGAAAGATAATGAAATTGAACAACTAAAAAGGATCATATCAGAGACTTCTAAAATA___GAAACAC	.	.	.
TALL041	BMPR1A	KIF20B	+/+	+/+	10:86838979	10:89758706	splice-site	splice-site	deletion	downstream	upstream	1	0	0	35	39	low	.	.	duplicates(1)	CTGGAGGATGCGTTCCCTGGGGTCCGG___ACTTATGAAAATATGCATCAGTTTAATACTGTCTTGGAATTCATGAGATGGAAGCATAGGTCAAAGCTGTTTGGAGAAAATCAGAAGTACAGTTTTATCTAGCCACATCTTGGAG|GAAATACTGACAGCCCAGCTGACAGAGAAAGATAGTGACCTTCAAAAGTGGCGAGAAGAACGAGATCAACTGGTTGCAGCTTTAGAAATACAGCTAAAAG	.	.	.
TALL041	BMPR1A	KIF20B	+/+	+/+	10:86851791	10:89758706	intron	splice-site	deletion	downstream	upstream	1	0	0	2	39	low	.	.	duplicates(1)	GTTGAACGGGACTCCTCAAGCAGCCTAATGAGTTGGGATTGAGGATTGCATACACAAGGGAACTCGCAGATCAAGTCCTGAAGAGAACATTGTAGTTACTCTGGCAAAGAACAACGAAGACACAAAAGCTGTGCAGAGTAATGGAAGCCTGGAAGGAGTGCCTGTGAAGGGAGAGCGGCTGCACTGACTTTGGTAGAGTTGGAGCATCGTAAGG|GAAATACTGACAGCCCAGCTGACAGAGAAAGATAGTGACCTTCAAAAGTGG	.	.	.
TALL041	IVD	GAK	+/+	-/-	15:40435557	4:876609	splice-site	splice-site	translocation	downstream	downstream	0	1	0	119	469	low	.	.	duplicates(2)	GCGAGACCCGAGGTCAGACGTCCCTGGAGCAGGTGAGCACTGCGAGGGAACTGAGATGCAAGATCCTCCTGCCTGAACTCACACCCCGCGTGCTGCTCCCCC|ATGGCATCCATGAAGATGTTCCAGATTC...ACACGGGGTTTGTGCCTCGGAACGCCACCACTGTGAAATTTGCCAA___GTATGACCTGGACGCGTGTGACATTCAAGAAAAATACCCGGATTTATTTCAAGTGAACCTGGAAGTGGAGGTGGAGCCCAGGGACAG	.	.	.
TALL041	FAU	PSME1	-/-	+/+	11:65120758	14:24138473	splice-site	splice-site	translocation	upstream	upstream	0	1	0	8357	3628	low	.	.	duplicates(1)	CTTGGAG___GTAAAGTCCATGGTTCCCTGGCCCGTGCTGGAAAAGTGAGAGGTCAGACTCCTAAG___GTGGCCAAACAGGAGAAGAAGAAGAAGAAGACAGGTCGGGCTAAGCGGC|t|GGTGATTATCGGCAGCTGGT...GTCATGGAGATCCGCAATGCTTAT___GCTGTGTTATATGACATCATCCTGAAGAACTTCGAGAAGCTCAAGAAGCCCAGGGGAGAAACAAAGGGAATGATCTATTGAGAGCCCTCTCTCCCATTCTGTGATGAGT	out-of-frame	LGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKR|l|viigsw	.
TALL041	TSPAN14	TRDC	+/+	+/+	10:80507374	14:22463774	splice-site	splice-site	translocation	downstream	upstream	0	1	0	159	6997	low	.	.	duplicates(1)	GGAGAATATCTGCTTGCTCAACTTT|ATCACGTAAAACCAAAGGAAACTGAAAACACAAAGCAACCTTCAAAGAGCTGCCATAAACCCAAAG___CCATAGTTCATACCGAGAAGGTGAACATGATGTCCCTCACAGTGCTTGGGCTACGAATGCTGTTTGCAAAGACT	out-of-frame	ENICLLNF|it*	.
TALL042	RP11-680G10.1	GSE1	+/+	+/+	16:85357643	16:85633914	splice-site	splice-site	deletion/read-through	downstream	upstream	12	16	3	103	149	high	.	.	duplicates(7),low_entropy(1)	TCCAGCTCAACGTGAACCCCGCCAGCCGCTTGGGCGAGAAGGAGCCCTTCTTCCCCTTCCTCACCGTGTACCCGCCTGCCCCTCGTGCCAGGCCTGTGGACTCCACCGGCCTGGTGGCTACCTGTGT...GCGGGTGGCCCGGCTGCCCCTGTTCCTATACACCCTGCGAGCAAGCCACAGCCTGTTGGTGGATGACGGACAGCAGCTGATCATCGGTGCTTGCGTGGAGTGTGGGACCCTGGTGTGTGCGGGCCAAGGGCTCACCCGCCAAGGACCCATGAGCTGGAGCTCCCCGGTGGCAGCAGCGACGAAG...GTTTGTGGATCTCTGGAAGCATCTGCAGCCAGCCACCCTCCCACCCGGGAGTCCGAGACCCGGCCACGCGCCCCCACGGAGACCCTGCCCAGAGGCCCCAGGATGGCCCAGGAGCTGAGGCCAGCACAGTGTCTGCAGAGCAGCCGGGAGGAGGACGGACCAGACCTTACTGGTGCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCC...GCCtGCTtCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCC	.	.	.
TALL042	RP11-680G10.1	GSE1	+/+	+/+	16:85357643	16:85648552	splice-site	splice-site	deletion/read-through	downstream	upstream	13	8	2	103	224	high	.	.	duplicates(4)	CCGGCTGCCCCTGTTCCTATACACCCTGCGAGCAAGCCACAGCCTGTTGGTGGATGACGGACAGCAGCTGATCATCGGTGCTTGCGTGGAGTGTGGGACCCTGGTGTGTGCGGGCCAAGGGCTCACCCGCCAAGGACCC...TGGAAGCATCTGCAGCCAGCCACCCTCCCACCCGGGAGTCCGAGACCCGGCCACGCGCCCCCACGGAGACCCTGCCCAGAGGCCCCAGGATGGCCCAGGAGCTGAGGCCAGCACAGTGTCTGCAGAGCAGCCGGGAGGAGGACGGACCAGACCTTACTGGTGCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCC	.	.	.
TALL042	RP11-680G10.1	GSE1	+/+	+/+	16:85357643	16:85654278	splice-site	splice-site	deletion/read-through	downstream	upstream	2	5	1	103	278	medium	.	.	duplicates(3),low_entropy(2),mismatches(2)	TGGCCCGGCTGCCCCTGTTCCTATACACCCTGCGAGCAAGCCACAGCCTGTTGGTGGATGACGGACAGCAGCTGATCATCGGTGCTTGCGTGGAGTGTGGGACCCTGGTGTGTGCGGGCCAAGGGCTCACCCGCCAAGGACCCATGAGCTGGAGCTCCCCGGTGGCAGCAGCGACGAAG...CCGGGAGTCCGAGACCCGGCCACGCGCCCCCACGGAGACCCTGCCCAGAGGCCCCAGGATGGCCCAGGAGCTGAGGCCAGCACAGTGTCTGCAGAGCAGCCGGGAGGAGGACGGACCAGACCTTACTGGTGCAG|GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCGAGGACTACCTGAGAAGCTTCCGGCCCTACCAC...CCCCTTCCCCCACCCGGCCTTCAG___GATGGACGACTCCTACTGCCTGTCTGCCCTGAGGTCCCCGTTCTACCCCATCCCCACCCCCGGCTCCCTGCCCCCACTGCACCCATCAGCGATGCACCTGCACCTC	.	.	.
TALL042	RP11-680G10.1	GSE1	+/+	+/+	16:85357643	16:85654794	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	1	103	327	medium	.	.	duplicates(1),mismatches(1)	GCGTGGAGTGTGGGACCCTGGTGTGTGCGGGCCAAGGGCTCACCCGCCAAGGACCCATGAGCTGGAGCTCCCCGGTGGCAGCAGCGACGAAG...CCGGGAGTCCGAGACCCGGCCACGCGCCCCCACGGAGACCCTGCCCAGAGGCCCCAGGATGGCCCAGGAGCTGAGGCCAGCACAGTGTCTGCAGAGCAGCCGGGAGGAGGACGGACCAGACCTTACTGGTGCAG|CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCGAGGACTACCTGAGAAGCTTCCGGCCCTACCACACCACCGACGACCTCCGCATGTCCTCACTGCCTCCCCTCGGCCTGGACCCGGCCACTGCTGCAGCCTACTACCACCC	.	.	.
TALL042	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	20	1	75	54	high	.	.	duplicates(2)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAG...CCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTC	.	.	.
TALL042	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	1	81	54	low	.	.	duplicates(1)	GCTGGACTCTGCTCAGAGGAACCTGTACAGGGATGTGATGCTGGAGAATTATAGGAACATGGCTTCCCTGG___TGGGACCATTCACCAAACCTGCTCTGATCTCCTGGTTGGAAGCAAGGGAGCCATGGGGCCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCC	out-of-frame	LDSAQRNLYRDVMLENYRNMASLVGPFTKPALISWLEAREPWGLNMQAAQPKGNPVAAPT|gmsrgqfgqgqepldmffwvneisgeityppqkadapavspespqkk	.
TALL042	ZNF445	LINC00694	-/-	-/-	3:44450868	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	66	54	low	.	.	.	GTCCCTGACAGCCCAGCTCCAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAAtCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCC	out-of-frame	SLTAQLQ|vclevsldrdrnl*	.
TALL042	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	10	9	2	59	149	high	.	.	duplicates(3),low_entropy(2),mismatches(1)	CTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGCGGGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTT?TTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCC...CCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCA	.	.	.
TALL042	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	3	2	2	65	30	high	.	.	duplicates(2),low_entropy(1),mismatches(1)	CTGCCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAGtCA	.	.	.
TALL042	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482896	17:4483875	intron	intron	duplication	upstream	downstream	2	2	2	84	74	high	.	.	duplicates(1),inconsistently_clipped(1)	.	.	.	.
TALL042	AC011288.2	AC011288.2(13628),AC005019.3(136578)	+/+	./+	7:13310323	7:13717777	splice-site	intergenic	deletion	downstream	upstream	2	1	0	54	30	high	.	.	duplicates(2),mismappers(2),mismatches(1)	GGACATACCTCTTCCCCTTCTGCCATGATTATAAGTTTCCTGAGTCCTTCCCAGCCATGCAGAACT___ACATGGATTCTCACTATGACACCCAGGCTGGAGTGCAGTGGCACAATCATAGCTGACTACAGCCTCGAATTTCTGGGCTtAAGCAAGGCTTTgATCTCAACCTCCCCAGGAGCTGGGATTACAG___ATGGTGTCAGAAGCGGGGTTCAAAGTAGAGCTTTAATGACCCCCAGAAGTGCTGAGTGAACAAGCAAGGTACCTGCAAGGACCCACTTGTGTCCTTTGATCTCTCAGAGCAGTGG|TTCTAGAGGCTGATAAGTCCAAGCATATGGTGCCAGCATCTGGTGAGGCCTTCTTGCTGTGTAATCTCATGGCAGAAGAGTGGAAGGACAAGTGAGCACATGCAAAAGGG	.	.	.
TALL042	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	20	44	4	129	79	medium	.	.	duplicates(6),low_entropy(1),mismappers(1)	GTGCAGGGCCTGGCCAGAGCGGGCCTGGCCACGGGCAAGGGACAGCGACCCCCGGGCCAGGACAGGTGAGAGCGGCGCAGGCCCGGGCCCGGCGTGGCGGAGGTGCGCGTGAGCGGCCAGCAGAGGGCGCCAGAGAGCCAGGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTG...GGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTG	.	.	.
TALL042	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	7	1	6	412	207	medium	.	.	duplicates(2),mismatches(3),read_through(4)	GGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCCCCCACCACCACCCCCAGCTCCTGAGGTGCTGGCCAGTGCACCCCCACTCCCACCCTCAACCGCGGCCCCTGTAGGCCAAGGCGCC	out-of-frame	MGLGRCIWEVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|gprelllcarpgpga*	.
TALL042	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	2	9	0	433	207	medium	.	.	duplicates(2),mismatches(1)	CCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCcCCGCCCCCACCACCACCCCCAGCTCCTGAGGTGCTGGCCAGTGCACCCCCACTCCCACCCTCAACCGCGGCCCCTGTAGGCCAAGGCGCCAGGCAGGACGACaGCAGCAGCAGCaCGTCTCCTTCAGGTGGGAGCAGCTCTTTGAGGCCACCTGATTTCTGGCGTGCTCAGTGCACTCGGGTGGATTTTCTGTGGGTTTGTTAAGT	out-of-frame	MGLGRCIWE|gprelllcarpgpga*	.
TALL042	IL9R	WASH6P	+/+	+/+	X:156007607	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	4	0	6	250	207	medium	.	.	duplicates(1),mismatches(3),read_through(4)	CCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCC...CTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___CAGGCCCAGCACAGGGATCACATTGTCGGGGTGACCTGGCTTATACTTGAAGCCTTTGAGCTGGACCCTGGCTTTATCCATGAGG...GCCAGCCTGTGTGCTTCCAGGCTCCCCAGAGACAAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG___GGTGAAGAGAATCTTCTACCAGAACGTGCCCTCTCCAGCGATGTTCTTCCAGCCCCTCTACAGTGTACACAATGGGAACTTCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCCCCCACCACCACCCCCAGCTCCTGAGGTGCTGGCCAGTGCACCCCCACTCCCACCCTCAACCGCGGCCCCTGTAGGCCAAGG	out-of-frame	QPVCFQAPQRQGPLIPPWGWPGNTLVAVSIFLLLTGPTYLLFKLSPRVKRIFYQNVPSPAMFFQPLYSVHNGNFQ|vpenyfyvpdlgqvpeidvpsylpdlpgiandlmyiadlgpgiapsapgtipelptfhtevaeplkadlqdgvltppppppppppapevlasapplppstaapvgq	.
TALL042	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	8	1	1	54	90	medium	.	.	duplicates(7),low_entropy(1),mismappers(8),mismatches(2)	GCCCACTGTGCACTCCATCATCAGCAAAATGATCATTAATGAGGAGCTGATG___GCCTCCCTGGACCAGCCAACACAGACAGTGGTGATGCACCGCACTGAGCCCACTGCCCAGCAGAACCTGGCTCTGCAGCTGGCCGAGAAGCTGGGCAGCCTGGTGGAGAACAACGAACGGGTGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACATTCTCTTCTGC	out-of-frame	PTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTFNILF	.
TALL042	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	7	1	91	349	medium	.	.	duplicates(2)	GAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL042	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	18	349	low	.	.	duplicates(1),read_through(7)	GCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCC...GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCC	out-of-frame	GNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL042	ZNF704	TMC1(6130),LINC01474(29247)	-/.	./.	8:80864875	9:72842481	intron	intergenic	translocation	upstream	upstream	1	2	4	5	16	medium	.	.	duplicates(1)	.	.	.	.
TALL042	ITM2C	PTMA	+/+	+/+	2:230865145	2:231711348	splice-site	splice-site	deletion	downstream	upstream	5	2	0	1311	9852	medium	.	.	duplicates(7),low_entropy(1),mismatches(7)	GGCAGAGACCGAGGCTGCACCGGCAGAGGCTGCGGGGCGGACGCGCGGGCCGGCGCAGCCATGGTGAAGATTAGCTTCCAGCCCGCCGTGGCTGGCATCAAGGGCGACAAGGCTGACAAGGCGTCGGCGTCGGCCCCTGCGCCGGCCTCGGCCACCGAGATCCTGCTGACGCCGGCTAGG|GACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCT___...GGAAAATGGGGAGC...___GTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGC...___GATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAG...AGAGAGGCCCGCCCGCCCACCGTGGGCAGTGCCACCCGCAGATGACACGCGCTCTCCACCACCCAACCCAAACCATGAGAATTTGCAACAGGGGAGGAAAAAAGAACCAAAACTTCCAAGGCCCTGCTTTTTT	in-frame	MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR|DLKEKKEVVEEAENGRDAPANGNA	.
TALL042	SPNS3	RP13-580F15.2	+/.	-/.	17:4482896	17:4483875	intron	intron	duplication/3'-3'	upstream	downstream	2	2	2	84	74	medium	.	.	duplicates(1),inconsistently_clipped(1)	.	.	.	.
TALL042	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	1	0	464	45	medium	.	.	mismappers(1)	GCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGG	.	.	.
TALL042	AC009960.3(15122),FAM117B(170)	FAM117B	./-	+/+	2:202635018	2:202635613	intergenic	CDS	inversion	upstream	upstream	1	1	1	38	14	medium	.	.	.	GTTTTGTTGTTGTTGGGCTGCAGGGGGAGGATTCTCGAGGCCGGAGGGCAGGCCCCCCAAGACGGGGTGACGAAGCCGGACTCCGGGGTGCAGGGGGAGACCGGGCCGGGGCAGGCAGCAACGAGGTGGTGCA|GCCGCCGCCGCTGCTGGGCACCGTGTCGTCGCCCAGCTCGTCGCCaACCCACCTGTGGACCGGCGAGGTGAGCGCGGCCC...GCTCGCCGGAGAAGAGGAGCCCCAGCGCCCCGGTTTGCAAAGCAG___GTGACAAAACACGACAGCCTTCTTCAAGCCCCTCCAGTATTATCCGACGCACTTCCTCCCTGGATACTCTTGCTGCACCGTATCTTGCTGGACACTGGCCTCGGGATAGCC	.	.	.
TALL042	PCNT	PTTG1IP	+/+	-/-	21:46367139	21:44851627	splice-site	splice-site	inversion	downstream	downstream	0	2	1	290	5733	medium	.	.	.	CTGTGCGGGACCACCTGCGAACCGAAGcGAGCACAGAGCTCGCCGGAACCGTGGCTCACGAGCTGCAGGGAGTGCACCAG|GCCTGTTTAAAGAAGAAAACCCGTATGCTAGATTTGAAAACAACTAAAGCGCTCCAGCACATCAGTCCCGACGCTTCCTGTGAGGTGCACGCTCCGCAGCCCAGCCCAGCCGGGAGACCACGTGGCCATTGCGGTCTCCTGACCTTGGCCAGTGAACCTGCC...GGTTTGGGtTTTTTTATACTCTgCTCAGTTTGTGAAACGCTAACTGCACACGAAGCCGCCTGACGGCACCCAGCGCTGTGGCTGTCATTCTCCCAGGGCAGAACCCTGCGTTTCTCTCTGTCCACTAACAAGC	in-frame	VRDHLRTEaSTELAGTVAHELQGVHQ|ACLKKKTRMLDLKTTKALQHISPDASCEVHAPQPSPAGRPRGHCGLLTLASEP	.
TALL042	PCNT	PTTG1IP	+/+	-/-	21:46349820	21:44851627	splice-site	splice-site	inversion	downstream	downstream	1	0	0	333	5733	low	.	.	.	C___GGGCCCTTAGGAACCTGGAGAGTCATCATCAAGCAGCCATTGAGAAGTTACGTGAAGACCTGCAGTCCGAGCACGGCCGGTGTTTAGAAGACTTGGAGTTCAAGTTCAAAGAGAGCGAGAAAGAAAAACAGCTGGAG|GCCTGTTTAAAGAAGAAAACCCGTATGCTAGATTTGAAAACAACTAAAGCGCTCCAGCACATCAGTCCCGA	in-frame	RALRNLESHHQAAIEKLREDLQSEHGRCLEDLEFKFKESEKEKQLE|ACLKKKTRMLDLKTTKALQHISP	.
TALL042	PTTG1IP	PCNT	-/-	+/+	21:44873502	21:46438164	splice-site	splice-site	inversion	upstream	upstream	1	0	0	1326	508	low	.	.	duplicates(1)	CGGAGTTGTAACGCTCCACTGACTGATAGAGCGACCGGCCGACCATGGCGCCCGGAGTGGCCCGCGGGCCGACGCCGTACTGGAGGTTGCGCCTCGGTGGCGCCGCGCTGCTCCTGCTGCTCATCCCGGTGGCCGCCGCGCAGGAGCCTCCCGGAGCTG|AAAAAAATGGCAGCAGAGCTGCAGTTCCAGTTTGTGGACGTCCTGCTGAAAGACAATGTTTC	out-of-frame	MAPGVARGPTPYWRLRLGGAALLLLLIPVAAAQEPPGA|ekngsraavpvcgrpaerqc	.
TALL042	AQP4-AS1	KCTD1	+/-	-/-	18:26701619	18:26629237	intron	splice-site	deletion/read-through/3'-3'	upstream	downstream	0	1	21	15	13	low	.	.	duplicates(4),mismappers(2)	GGAGAGACGAAGAGAGTGTATGT|CTCCCGTCACTAGCTTTTTCTCCTCAAGCCTGCACTGCACACCAACTGGGAtGGAGGGTGCAGATGAATAAAGGCAAATCCATCACCAA...TTTTTAAATCTACCTATGACCTGAAATCTCCTGCTTTGAGCTGTCCCACCCTTCCAGATTGAACCAAT___ACCCTCGATTGTAGACAGCCCATGTTGACTCAAAATAAAGACCACATCTCCC	.	.	.
TALL042	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	6	1	0	14	10	low	.	.	duplicates(1)	CTGAAAGCTCCCAAGAGTACGTTACTCTTCAAGG___TATAAGCCATGTAGAACTGAATGTTATGATGCATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACTAATGTTGG___TCAGATACTCAATATGGCTG...___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACG	out-of-frame	PVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkw	.
TALL042	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	6	1	41	24	low	.	.	duplicates(2),low_entropy(2)	AGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCG	.	.	.
TALL042	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	3	1	21	10	low	.	.	low_entropy(1),mismatches(1)	AGTGTCAtTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGG...GTCCATCCTGGCTAACACgGTGAAAgCCCATCTCTACTAAAAATACAAAAGCAAAATTAGCTGGGCGTGGTGGCAGGCACCTCTgGTCCCgGATATTCGGGAGGCTGAGGTGGGAAAATGGCGTGAgCCCGGG...GCACATGAGGTCAGCGCCTAAAGAG___TCTGTAAAATCGGATGGACCGCCAATCGGAGAATGAGAGCTGCCCAGCCTGGTCTTACATTCTTTCAATTAATTCATAAACAGGGGGATATGCAGGGAGCCGAAGGCC	.	.	.
TALL042	KLRB1	DDX12P(1504),RP11-726G1.1(17819)	-/-	./-	12:9598046	12:9449733	splice-site	intergenic	deletion/read-through	upstream	downstream	4	3	0	3586	13	low	.	.	duplicates(1),mismatches(1)	ATTGGCAGCAACTCCGAGAGAAATGCTTGTTATTTTCTCACACTGTCAACCCTTGGAATAACAGTCTAGCTGATTGTTCCACCAAAGAATCCAGCCTGCTGCTTATTCGAGATAAGGATGAATTG___ATACACACACAGAACCTGATACGTGACAAAGCAATTCTGTTTTGGATTGGATTAAATTTTTCATTATCAGAAAAGAACTGGAAGTGGATAAACGGCTCTTTTTTAAATTCTAATGA|GTCTGCACTGCCTTTACGAGCTGTAACACTCACTGTAAATGTCTGCAGCTTCACTCCTGAAGCTAGTGAGAGCACGAACCCACCGGGGTGAACGAGCAACTCCAGTACACGCCGTCTTAAAAGCTGTAACgCTCAGGCGAAGGTCTGCAGCTTCACTCCTGAGCCAGCAAGACCACAAACCCACCAGAAGGAAAAAACTCCGAACCTATTGGAACATCtGAGGGAACAAACTCCAGACACACCGCCTTTATAAAACTAACACCGTGAGGGTCTGTAGCTTCTGTCTTGCGTTAGTGAGACCAAGAACTCATCAATTCTGG	out-of-frame	WQQLREKCLLFSHTVNPWNNSLADCSTKESSLLLIRDKDELIHTQNLIRDKAILFWIGLNFSLSEKNWKWINGSFLNSNe|salplravtltvnvcsftpeasestnppg*	.
TALL042	AC013463.2	SCN2A	+/+	+/+	2:165130204	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	2	114	17	low	.	.	mismappers(2),mismatches(1)	CAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCT...AACAGGAACGCAAGGgTGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGA	.	.	.
TALL042	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	2	44	17	low	.	.	duplicates(1),mismappers(2)	GTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCT	.	.	.
TALL042	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	2	16	17	low	.	.	duplicates(2),mismappers(2),mismatches(1)	AAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG___GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCT	.	.	.
TALL042	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	2	1	0	9	17	low	.	.	duplicates(2),mismappers(6)	CCTG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAG	.	.	.
TALL042	LZTFL1	SLC6A20	-/-	-/-	3:45826255	3:45782229	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	6	559	9	low	.	.	duplicates(2),mismappers(2)	AGAAAACCAGAAGTCACTGGAGGAGAATCTGGCGACAGCCAAGCACGATCTACTCAGGGTTCAGGAGCAGCTGCACATGGCTGAAAAG___...AGAATGACCAAATCAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGG...|...CCtCAGGTAGTTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCG___GGGTCGCCAGC	.	.	.
TALL042	ADCYAP1	RP11-78F17.1	+/+	+/+	18:907790	18:1159179	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	1	867	38	low	.	.	duplicates(2),mismatches(1)	GGGAGAAGAGACAATTCTCAGCGGAGGACTTTTATCACCTGTGAAAATCCGCGCGAGCCCCTTACTTTGGATCCTCGCCGAGCTGGGGAGGAACTTGCACTGACCACACCTTCTGTCCCCGGCCACCCCGCAGGCCAGAGGAAGAGGCGTACGGCGAGGACGGAAACCCGCTGCCAGACTTCG?TGGCTCGGAGCCGCCGGGCGCAGGGAGCCCCGCCTCCGCGCCGCGCGCCGCCGCCGCCTGGTACCGCCCGGCCGGGAGAAG|GGAAAACATGCTGCTTCTTCAAAGACTCCAATTTCAGATGGCAAAATGCATGGAAGCTGAGATGGACCTTCTGGAGTTTTCGATAAACCACTGTAGCTCAGTCAGAGGTCCAATTATGATGATACCCACACAGCCC	out-of-frame	ekrqfsaedfyhl*ksarapyfgsspswggtctdhtfcprpprRPEEEAYGEDGNPLPDF?GSEPPGAGSPASAPRAAAAWYRPAGRr|enmlllqrlqfqmakcmeaemdllefsinhcssvrgpimmiptq	.
TALL042	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	71	18	low	.	.	duplicates(1)	CTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTT___AAGCAACTGGAAGGAACCCCAACTAAGCTATTGTTGGAAGCGTCCAT	out-of-frame	LEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL042	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	intron	deletion/read-through	downstream	upstream	0	4	0	14	10	low	.	.	low_entropy(1)	GTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCTCTCTTCTTATGGCTCTGGACACACTGCTGAACTCTGACAGTACAAAGGAA	in-frame	LFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEENITTENSCSLLMALDTLLNSDSTK	.
TALL042	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	13	3	low	.	.	.	CTAAAAGCAAGGAGCCAGCAAGTCTAGCAAACATGCAAGCCCTGCCCCAGCTTTTCTCCCAACACTCAGCTCTTCTCCCAACACAAGAGCTTTTGGAGGTCACTTCTGGGGCCTTTGCTAAGCAGGCCACTCC...CACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___TGTTTCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAGGACTGCAAGTATATCGTGGTGGAGAAGAAGGACCCAAAAAAGACCTGTTCT	.	.	.
TALL042	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	0	4	0	23	202	low	.	.	duplicates(1)	CAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTC...GCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAAGACGTCATTACTCTACGGAGACATGTGGAAACAAAAGTTAGAGCTAAAATCCGTAAGAGGAAG	.	.	.
TALL042	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528951	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	20	202	low	.	.	.	CTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGG...ATTCAGTGGGTTCAAAATTGAGTTTGTCCTTTCTGCTTCATTAGTTTAAGCTGTATAATTCCTTTCCCTTCCTACATTCTTGTTTTCA[t]TTTTTTCGGAGGAAGAGGAGTTGCTAGTACTGGCATTGGTTTTC	.	.	.
TALL042	CABYRP1(44898),CACNA2D3(28856)	CACNA2D3	./+	+/+	3:54093691	3:54123513	intergenic	splice-site	deletion/read-through	downstream	upstream	0	2	1	10	9	low	.	.	duplicates(5),mismappers(2)	GGACATAAGACAGTGAACATGAAGAGAGCTGATCTTTCTACAAGAGCTGAATGCTTTGGAAACACTGAACAGTAATCACTGAAAAATGCCATGGAATTAG|GGTGAAGCTCTGGGCCTCGGCTTTTGGTGGGGAGATAAAATCCATTGCTGCTAAGTACTCCGGTTCCCAGCTTCTGCAAAAG___AAATACAAAGAGTATGAGAAAGACGTTGCCATAGAAGAAATTGATGGCCTCCAACTGGTAAAGAAGCTGGCAAAGAACAT...ACATGAATTTGATGCAGACTTACAG___TATGAATACTTCAATGCTGTGCTGATAAATGAAAGGGACAAAGACGGGAATTTTTTGGAGCTGGGAAAGGAATTCATCTTAGCCCCAAATGACCATTTTAATAATTTG	.	.	.
TALL042	AL589822.1(43523),AGAP7P(2332)	AC244230.1	./+	+/+	10:46107289	10:46337259	intergenic	CDS	deletion/read-through	downstream	upstream	0	1	2	14	19	low	.	.	.	CTCACTGTCTTTTTCTCTCTCCCTATCCTCCGCTCATTTTTTGCAAGCAAGAATTCTCCCTTTGATTTATTTTTCTCCTAGAGAGACATGTTGGGCCGCGGTTCTCTTCATCCACCCATCCCTCCGTTCATGACATATTGCTCCATTATCTTCTTGGGCTGGCTGCTAGG|CGTCAGCCTCGAGTTTGACCAGCAGCAGGGGTCGGTGTGTCCCTCTGAATCTGAGATCT...GCACCACGTTCGTGACCGGGAGATGCCTGAAG___CTTTGGAGTTTAACCTTTCTGCCAATCCAGAGGCAAGCACAATATTACAGAGGAACTCTCAAACAGATG___CTTTGGAGTTTAACCCTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACTCTCAAACAGATG___TTGTAGAAAT	.	.	.
TALL042	OGFOD3	UTS2R(3482),RP13-20L14.1(2042)	-/-	./-	17:82392381	17:82379068	3'UTR	intergenic	deletion/read-through	upstream	downstream	1	2	0	59	22	low	.	.	.	CCTACACCGCGTGGAGAAGGTCCACTGGGGCACCCGTTACGCCATCACCATCGCCTTCAGCTGCAACCCCGACCATGGCATCGAGGACCCAGCGTTCCCGTAGCCAGCAGCCGGGCCAAG|GGGTTTCCCGCAGCCCACACTCACATGCACACGCGTGCCCGTGCCACCCTTTTCTTCACGTTACCCAGCCCTGCCCTGAAGCTCTGCCTTTCCAGGGAATTCTGTCCTCATCGGCCCCGTGCTGACATCCGTGGAGGACACACGTGGTTGTAGATGCCTGCATGGTCACCTCCAGCAACTGTGCCTCACATCATGGGGGCTACCCGCCCTCTCCAAACCCAG	out-of-frame	LHRVEKVHWGTRYAITIAFSCNPDHGIEDPAFP*paagpr|gfpqptltctrvpvppfssrypalp*	.
TALL042	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	17	6	low	.	.	.	GATCCCACAGG___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGACTATAAAATTTGCTGCAGC	.	.	.
TALL042	POLR3K	WASH4P	-/-	-/-	16:51558	16:17750	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	143	105	low	.	.	.	CCGGGAGTTGGAGCCTGCGGAGTTCGAGACCATGCTGCTGTTCTGCCCCGGCTGCGGGAACGGGCTGATCGTGGAGGAGGGACAACGCTGCCACCGCTTCGCCTGCAACACGTGCCCCTAtGTGCACAACATC...CGGAAGTACCCAAAACTGAAAGAAGTGGATGATGTGCTTGGTGGAGCAGCTGCCTGGGAGAATGTTGACTCTACTGCAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCGCCTGCAGGAATATGGCTCCATCTTCACCGACGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCC	out-of-frame	RKYPKLKEVDDVLGGAAAWENVDSTA|gvlqcqvpcsrapagiwlhlhrrpgpwpaetpp	.
TALL042	POLR3K	Z84812.4	-/-	-/-	16:51558	16:17750	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	143	105	low	.	.	.	CCGGGAGTTGGAGCCTGCGGAGTTCGAGACCATGCTGCTGTTCTGCCCCGGCTGCGGGAACGGGCTGATCGTGGAGGAGGGACAACGCTGCCACCGCTTCGCCTGCAACACGTGCCCCTAtGTGCACAACATC...CGGAAGTACCCAAAACTGAAAGAAGTGGATGATGTGCTTGGTGGAGCAGCTGCCTGGGAGAATGTTGACTCTACTGCAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCGCCTGCAGGAATATGGCTCCATCTTCACCGACGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCC	out-of-frame	RKYPKLKEVDDVLGGAAAWENVDSTA|gvlqcqvpcsrapagiwlhlhrrpgpwpaetpp	.
TALL042	C5orf56	IRF1(33892),IL5(16754)	+/+	./+	5:132475683	5:132524690	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	3	321	1	low	.	.	mismappers(1)	GAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG___CCTG...|...AGCCTGAGTGACAGAAATCACAAGATCAGCTCACGATAAAGCCAAGCACTGGAGAAAATTTCACTTTTTTCAGAATGTTCTTCATGCATTTCATCTTATGTCTTCCTGCGGTACCGCAGCCTACCATTCCCAGCATGTGACCTTGGGCAAGTTCCTTGGCCTCTCTAATTCCCAC	.	.	.
TALL042	RP3-492J12.2	ZNF831	+/+	+/+	20:59146374	20:59190984	exon	5'UTR	deletion/read-through	downstream	upstream	0	2	1	7	15	low	.	.	mismappers(1)	CGAGCCCACACCAGGGCAGGCTGCACACCTACCCCCGGTGTCCCTCTGCCACCCCCGCCGCCCCAGCAACCCCGACACCCACCACCCTCCACACACACAATTTTTCTTTTTTTAAATTTCC...GGACGAGCAGGGAGAATGCTCCTGCCTCATCGGAGCCACCGGTTTTCGGGAGAGAGCGGCAGCCCCCACCTGCCTGTGGACTGAGCACTTAAAG|GTTTTCCAGCATTGTGGGCCATCCAGATGATGCGGAATGGAGGTTCCAGAACCCACCTGCCCTGCCCCTCCTGCGAGGGACCAGCCAGCTCCCACTCCTGGCCCTCCAGGGGCCCCAGGTGGCCAGGCCTCACCTCACCTGACCCTGGGCCCTGTCCTTCTGCCGCCAGAGCAGGGCCTGGCCCCCCCCACTGTGTTCCTGAAGGCCCTGCCCATCCCACTGTACCACACGGTGCCTCCCGG...GACGGTGAACATCGTGGGCACTCTGCCTGTCCTGTCGCCGGGCCTGGGCCCCACGCTGGGCAGCCCAGGCAAGGTGCGGAATGCGGGCAAGTACCTGTGTCCGCACTGTGGTCGCGACTGCCTGAAGCCCAG	.	.	.
TALL042	CMTR1	CCDC167(576),RP1-153P14.8(6850)	+/+	./+	6:37479255	6:37500498	splice-site	intergenic	deletion/read-through	downstream	upstream	0	1	2	148	2	low	.	.	duplicates(2),low_entropy(1)	GTGAAGGAGGTGTACAGACTGGAAGAGATGGAGAAGATTTTTGTCAG___...ACATCGTCAGGACAGTGAATG___AGCCCTGGACTATGGGATTCAGCAAAAGCTTCAAGAAGAAGTTCTTCTACAACAAGAAAACCAAGGACTCTACTTTTGACCTCCCTGCAGACTCCATTGCCCCATTTCA|GCTTGGCCTCACACACAGTATTTTACATTGTTGTAATCGTACTATACTGTACACCATAGACCCACGGCCTTTGAAATGTTTTGACTGTGACCCTACGATAAAAAAATGTATTTTATACCATGGCCCAGTTACCCATGAAACCAAAACCAAAGTTTCACAGTAAGTACCTTTACCTCCTGTAATGCACTCTGTTATTTTGTATTCTTG	out-of-frame	IVRTVNEPWTMGFSKSFKKKFFYNKKTKDSTFDLPADSIAPFq|lglthsilhccnrtilytidprplkcfdcdptikkcilyhgpvthetktkvsq*	.
TALL042	IRF1	C5orf56	-/-	+/-	5:132486557	5:132449666	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	1	2	0	282	337	low	.	.	.	GTCCAGCCGAGATGCTAAGAGCAAGGCCAAGAGGAAG___TCATGTGGGGATTCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCTCCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGGCTACATGCAGGACTTGGAGGTGGAGCAGGCCCTGACTCCAG|GCTACAAACTCTGGCACCTGCAAAAAACAAGGAAAGTAAATGATTGAAGCAGGGCACTGAAGGTGGGCCTTTGAACAACGCAAGCCTGGATGGAAGTTGAAAGATGAGAGCCCATCTGTG___GAATTCTTTGGACCTTCTGGATATAAGCCCCAGTCGTCTGTCGGATATGTTACAGAGAATATCCTCTCCTCTTCCAGTCTCTGGCTCGCCT	out-of-frame	SSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALTP|gyklwhlqktrkvnd*	.
TALL042	KIAA1211	AASDH	+/+	-/+	4:56327800	4:56355296	CDS	CDS	deletion/read-through/5'-5'	downstream	upstream	2	1	0	67	39	low	.	.	mismappers(1)	CAGAGAAAGTGGAAACTGCTCAGCCGCTGTGGATAACGTTAGCACTGCAAAAGCAAAAGGGGTTTCGGGAGCAGCAGGCGACGCGGGAGGAGAGAAAGCAAGCCAGAGAGGCCAAACAGGCAGAAAAGCTCTC...CTCCGACTCGGCTCCCCCAGCGCCGCTGGTAAAAGAAGTCACCAAGAGGTTTTCCACCCCGGATGCTGCCCCCGTGTCAACAGAACCAGCCTGGCTGGCTTTGGCCAAAAGGAAAGCAAAGGCTTGGAGCGACTGTCCACAGATTATTAA|CTTCTGAGAACTGTCAATGATGGAAACGCTTCACCACCAAGGGCTAATACTCGAAGAGAAGTAGTGGCTGACAAAACAGTTGACTTGATAAGCTGAG	out-of-frame	SDSAPPAPLVKEVTKRFSTPDAAPVSTEPAWLALAKRKAKAWSDCPQIIn|f*	.
TALL042	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31583149	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	111	38	low	.	.	duplicates(1)	TTGATTG___CAGTTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___CTGGCAGGCTGGGAACCACAGCGCCTTCTGGGGCATGACCCTGGATGAGGGCATTCGCTACCGCCTGGGCACCATCCGCCCATCTTCCTCGGTCATGAACATGCATGAAATTTAT___ACAGTGCTGAACCCAGGGGAGGTGCTTCCCACAGCCTTCGAG	.	.	.
TALL042	RUNX3	CLIC4(28966),RUNX3(26221)	-/-	./-	1:24919240	1:24873290	splice-site	intergenic	deletion/read-through	upstream	downstream	0	3	0	500	9	low	.	.	mismappers(1)	TTCACCCTGACCATCACTGTGTTCACCAACCCCACCCAAGTGGCGACCTACCACCGAGCCATCAAGGTGACCGTGGACGGACCCCGGGAGCCCAGAC|TTGCTTGGAACACTGAACCAGGAGTCAAGACCAAGAGATGGGTTCTAGGTGTGGATTTGACGCTGTGTGACCTTGG___CCCAGGCAACAGAGGCACAGAGAGATGGAGCGGCTTGCCCAAGGCTACACGGCCAGCCAGA	out-of-frame	FTLTITVFTNPTQVATYHRAIKVTVDGPREPR|lawntepgvktkrwvlgvdltlcdlgpgnrgterwsglpkatrpa	.
TALL042	AMER1	ARHGEF9(125035),HNRNPDP1(109996)	-/-	./-	X:64193384	X:63934309	5'UTR	intergenic	deletion/read-through	upstream	downstream	0	0	2	0	3	low	.	.	.	GCCGCGGCGACGGCGGCAGCAGCTGCGGTGGCGGCGCTCTCAGCCGTGGCAGCCGAGGCTGCAGCCCGGCCCAGGGCGGCTCAGCGGACAATAACCGGGCTAGGAACCTGACCGGGCTGG___A...|...ACTAACTCTCTCTCAGAGATGCTGCCCAATGGTTATGTGACTCAAGTCATCCCAGACCACCCTGAGGTAGAAAGCCTGACCAGAGAGGTAGGGCTGGAGGAATTGGAGAAATCTGAGCAGTATGACCAGAGT	.	.	.
TALL042	ZFAT	RP11-513H8.1(132488),ZFAT(24853)	-/-	./-	8:134509619	8:134452935	splice-site	intergenic	deletion/read-through	upstream	downstream	1	1	0	17	2	low	.	.	.	CTGGACCCCACGGCCGTGAACATCCTGCAGCAGATCATTGAGCTGGGCGCCGAGACCCATGACGCCACTGCCCTTGCCTCGGTGGTTGCCATGGCACCAGGGACGGTGACTGTGGTTAAGCAG|GTCACCCAGTCATCAGTATCCTGCTGTGATCCTGACAGACACCAATGGCCATGCCCACTGCCACACCTTCC...CACCCCTGCTTCCTTTCCCTTTTTGCCTTCAGAGGTCACCTCTTTTGGATAAATCAAAGTGTCTCCTTTGAACCAGAAGTACCTTTGATTCTCCTTTGCCTAGTTCTGCCTGGCAGAAGCAGCCTTGTTTGGC	out-of-frame	LDPTAVNILQQIIELGAETHDATALASVVAMAPGTVTVVKQ|vtqssvsccdpdrhqwpcplphl	.
TALL042	TPCN2	RP11-554A11.9	+/+	+/+	11:69135532	11:69159446	intron	splice-site	deletion/read-through	downstream	upstream	2	0	0	17	17	low	.	.	mismappers(1)	TGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GAGGCCG...GGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAAC...GTGGTGGACAGACTCTCCATGCCCCGATGAAGTT|GACTTGCTGTGCTCAGATCCTCCATTCAAGAGAGCTACAGACACGGGGGTGCTGGTGAGCAGGAGCCGAGACCATCTGGGGTGGGACCGACCAAGAGTTTGAGGTGTCCAG...___CAAGAAGTCTGGCATTTGGCATTCCCAGGCTGTGGCGTGACAGC	.	.	.
TALL042	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	8	241	low	.	.	duplicates(2),mismappers(1)	CTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGC...GGTGTCCAGTCAGGGACGCCCATCACCAATGATCTCTTCAGCCAAGCCCTACAGCATGCCCTTCAGGCCTCTGGGCAGCCCAGCCTTCAG___AGCCAGTGGCAGCCCCAGCTGCAGCAGCTACGTGACATGGGC	.	.	.
TALL042	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74458896	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	8	248	low	.	.	.	CCGAGTACAGCCATGGAGACCACT|GGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCACCTGGCGGTGAAGCTGGCTGACCAGCCACTTACTCCAAAGTCTATTCTTCGGTTGCC...GGGCTATAGTATTTCATTTCTGAAGCAGCTTATTGCTGGCAAACTCCAGGAGTCTGTTCCAGACCCTGAGCTGATTG___ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGC	.	.	.
TALL042	CCDC18	RP4-717I23.3	+/+	-/+	1:93216746	1:93322306	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	0	2	0	43	5	low	.	.	duplicates(1),mismappers(1)	CAACTTTTAACTCTTGAGAAACAGCTGGAAGAAAAGATAGTTGCTTATTCCTCTATTGCTGCAAAAAATGCAGAACTAGAACAGGAGCTTATG|AATGTTGCTGTGAACTAGATGTGAATTTATGAAGGTGATGAAAATAGCAATTAAGCTAAGAACTACTTCTGGCAG___CTTGAATATGAGCTTTCCAAAAGCATCAGCACTGTTTGTCTTATGTTGGATCCTTATCTCCCAGCATGGTGCCTGG...TTTTGTGTGTATGTGGAGGGTGGAGAGTTATAGTTGAGTAGTTTCCAAACTAATGTTCATCTAGCTATTTGTGGAATCGTAAAGATTTTGTCTATTAGAGGCATGAGCCACCGCGCCCAGCCTATGCTCCCT	out-of-frame	QLLTLEKQLEEKIVAYSSIAAKNAELEQELM|nvavn*	.
TALL042	VTI1A	RP11-57H14.5(15007),RP11-57H14.3(41274)	+/+	./+	10:112815919	10:112847461	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	0	2	48	5	low	.	.	mismappers(1)	TGACACTCCTAGCCCTCTGGACGTGTCAAGGGCCGTGGTTTGGGAGAGGACATGATGAGTCAGTCACGAGAGCTTCTGTTTGTCACCCGCCTCTTGTTGCTGAAAAGCTCTTCTGTGATGTCTGAGGATAAAAATGCAGCAAAAAGCAGGGGATGGAGTCAGTGACCCCGTCCAGCAAGCCAGCCCTGTTCCTACACAGGCCTCATGAATATAGTCATCAACCTGCCTGAGTGCTTTCATTGTAAAG|TCTGACAAGCAAAG	.	.	.
TALL042	UBE2Q2	ETFA	+/+	-/-	15:75883424	15:76295737	splice-site	splice-site	inversion	downstream	downstream	0	1	1	114	322	low	.	.	duplicates(1)	CTTTTaAGGATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGG|GCCTCATTGCTACGATTTCAGAGTACCCTGGTAATAGCTGAGCATGCAAATGATTCCCTAGCACCCATTACTTTAAATACCATTACTGCAGCCACACGCCTTGGAGGTGAAGTGTCCTGCTTAGTAGCTGGAACCAAATGTGACAAG___GTGGCACAAGATCTCTGTAAAGTAGCAGGCATAGCAAAAGTTCTGGTGGCTCAGCATGATGTGTACAAAGGCCTACTTCCAG___AGGAACTGACACCATTGATTTTGGCAACTCAG	out-of-frame	fkDNFPFDPPFVRVVLPVLSGg|phcydfrvpw*	.
TALL042	STK38	BAZ2B	-/-	-/-	6:36521734	2:159332686	splice-site	splice-site	translocation	upstream	downstream	0	2	0	167	174	low	.	.	duplicates(1)	CGGGACATGTGTATGCAATGAAAATACTCCGTAAAGCAGATATGCTTGAAAAAGAGCAG|TACTGCCAAATCTGTCGAAAGGGAGATAATGAAGAACTGCTTCTTCTTTGTGATGGCTGTGACAAAGGCTGTCATACCTACTGCCATAGACCCAAGATTACAACAATCCCAGATGGAGACTGGTTTTGTCCAGCTTGCATTGCTA...ACAAGTAGTTCACTAAAAAGAGGAAACAAAGACCTCAAGAAAAGAAAAATGGAGGAAAACACTTCTATTAACTTGTCAAAACAAGAAAGTTTTACTTCAGTTAAGAAACCTAAAAGAGATGACTCCAAG	in-frame	GHVYAMKILRKADMLEKEQ|YCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIA	.
TALL042	C15orf39	SIN3A	+/+	-/-	15:75202059	15:75430408	splice-site	splice-site	inversion	downstream	downstream	1	1	0	106	198	low	.	.	duplicates(2)	GGTTGCTCCGGGCTTGGTGCTCACTGCGACTTCCCGCGCAGGGCCCGGTCGGACTAGGACCCGCGGCCTGAGAGACGCTGGAGGATGCGGACGCGGAGGCCGCCTGGGGTAGCGGCGGCGGGAGTCCTGGCGCTCTGCAG|GTTTTGTAGTGCATCCCTGAGCATGAGCACAGAATGAAGCGGCGTTTGGATGACCAGGAGTCACCGGTGTATGCAGCCCAGCAGCGTCGGATCCCTG...AGCTCCGGCAGTCATGGGCCCGCTATAGCAGCAGTTCATAGCAGCCATCATCACCCAACAGCGGTGCAGCCCCACGGAGGCCAGGTGGTCCAGAGTCATGCTCATCCAGCCCCACCAGTTGCACCAGTGCAGG	.	.	.
TALL042	SPRED2	B3GNT2	-/-	+/+	2:65431962	2:62222212	splice-site	splice-site	inversion	upstream	upstream	1	1	0	92	390	low	.	.	duplicates(1)	GCTTCCCCTTCTGCTGCGGCGCCCTCTTCATCTCTAGCCGCCCCCCCTCCCCAAATCAGGCGATCTCCGGAGATGTGAAGAAGGGGGGCGAGCGGACAGGAAGATGAAGGGAGCAAAGCTGCCCGCCGCGGGACAGGCGTCTAGGTGAACAAGAAAATGACCGAAGAAACACACCCAGACGA|ATATGAGAAATGAGTGTTGGACGTCGAAGAATAAAGTTGTTGGGTATCCTGATGATGGCAAATGTCTTCATTTATTTTATTATGGAAGTCTCCAAAAGCAGTAGCCAAGAAAAAAATGGAAAAGGGGAAGTAATAATACCCAAAGAGAAGTTCTGGAAGATATCTACCCCTCCCGAG	out-of-frame	MTEETHPDe|yek*	.
TALL042	RORB	DAZAP1	+/+	+/+	9:74497983	19:1428842	splice-site	splice-site	translocation	downstream	upstream	0	2	0	478	1158	low	.	.	duplicates(2)	GGCTCTCCGGGGTTCGGGCTGGGAGCAGCTTCATGACTACGCGGAGCGGGAGAGCGGCCACACCATGCGAG|GTGGAAGTTAAACGAGCTGAGCCTCGGGACAGCAAGAGCCAAGCGCCGGGACAGCCAGGTGCCAGCCAGTGGGGGAGCCGGGTTGTGCCCAACGCTGCCAATGGCTGGGCAGGCCAGCCCCCGCCCACGTGGCAGCAAGGATATGGCCCGCAAG___GAATGTGGGTGCCGGCAGGACAGGCGATTG___GTGGCTATGGACCGCCCCCTGCAGGAAGAGGAGCCCCCCCGCCACCCCCACCGTTC	out-of-frame	MR|ggs*	.
TALL042	BCL7A	CCDC92	+/+	-/-	12:122022183	12:123944364	splice-site	splice-site	inversion	downstream	downstream	0	2	0	611	28	low	.	.	.	CCGGGCCAAAGATGATATCAAGAGGGTCATGGCGGCGATCGAGAAAGTGCGCAAATG|TATTTTTCAGTGCTGTACAAGCGTCTTGAATTACTCTGGTAGCTTTTCCAGAAAGACCCATGACTTCACCACATTTC...G___GTCCTCTGGATGTCAGCATGGCAGCCACAAACCTGGAGAACCAGCTGCACAGCGCACAGAAGAACCTCCTGTTCCTTCAGCGGGAGCATGCCAGCACGCTCAAGGGGCTGCACTCCGAGATCAGGCGGCTGC	out-of-frame	RAKDDIKRVMAAIEKVRKc|ifqcctsvlnysgsfsrkthdfttf	.
TALL042	PPP1CB	FOSL2	+/+	+/+	2:28752176	2:28404107	splice-site	splice-site	duplication	downstream	upstream	0	2	0	663	206	low	.	.	duplicates(1)	GGGAAGGAGAGTCTGTGCCGACAAGATGGCGGACGGGGAGCTGAACGTGGACAGCCTCATCACCCGGCTGCTGGAGG|AAATTCCGGGTAGATATGCCTGGCTCAGGCAGTGCATTCATCCCCACCATCAACGCCATCACGACCAGCCAGGACCTGCAGTGGATGGTGCAGCCCACAGTGATCACCTCCATGTCCAACCCATACCCTCGCTCGCACCCCTACAGCCCCCTGCCGGGCCTGGCCTCTGTCCCTGGACACATGGCCCTCCCAAGACCTGGCGTGATCAAGACCATTGGCACCACCGTGGGCCGCAGGAGGAGAGATGAGCA	out-of-frame	MADGELNVDSLITRLLE|eipgryawlrqcihphhqrhhdqpgpavdgaahsdhlhvqpipslaplqppagpglcpwthgppktwrdqdhwhhrgpqeer*	.
TALL042	PFKP	KEAP1	+/+	-/-	10:3120044	19:10500080	splice-site	splice-site	translocation	downstream	downstream	0	1	1	1364	272	low	.	.	.	CGCTACTGTGTCCAACAATGTGCCGGGTTCCGATTTCAGCATCGGGGCAGACACCGCCCTGAACACTATCACCGAC|GTCCCTGAGTGCCAGAGGTGGTGGTGTTGCTTATCTTCTGGAACCCCATGCAGCCAGATCCCAGGCCTAGCGGGGCTGGGGCCTGCTGCCGATTCCTGCCCCTGCAGTCACAGTGCCCTGAGGGGGC	out-of-frame	ATVSNNVPGSDFSIGADTALNTITD|vpecqrwwcclssgtpcsqipglaglgpaadscpcshsalrg	.
TALL042	JARID2	PFKP	+/+	+/+	6:15501409	10:3129819	splice-site	splice-site	translocation	downstream	upstream	2	0	0	342	1218	low	.	.	.	ACTGCCAGTACCTACTCTCCTACGACTCCCTGTCCCCAGAGGAGCACCGGCGGCTGGAGAAGGAGGTGCTGATGGAGAAGGAGATCCTGGAGAAGCGCAAGGGGCCGCTGGAAGGCCACACAGAGAACGACCACCACAAGTTCCACCCTCTGCCCCGCTTCGAGCCCAAGAATGGGCTCATCCACGG...CGCTCAGGAAAAAGAAGTGGTCAAGGAAGAGGAGGAGGACAAAGGCGTCCTCAATGACTTCCACAAGTGCATCTATAAG|ACCTGCGACCGCATCAAGCAGTCCGCCAGCGGAACCAAGCGGCGCGTGTTCATCAT	in-frame	AQEKEVVKEEEEDKGVLNDFHKCIYK|TCDRIKQSASGTKRRVFI	.
TALL042	CD99	ZFY	+/+	+/+	X:2720424	Y:2953909	splice-site	splice-site	translocation	downstream	upstream	0	1	1	3704	62	low	.	.	.	CGACCACCGAACCCACCCAAACCGATGCCAAATCCAAACCCCAACCACCCTAGTTCCTCCG|GAGCTGTGACTAATGAGAATTAAAGGCCATGGATGAAGATGAATTTGAATTGCAGCCACAAGAGCCAAACTCATTTTTTGATGGAATAG___GAGCTGATGCTACACACATGGATGGTGATCAGATTGTTGTGGAA...CAGTGCTCAGATATCTTAGAAGAGGCAGATGTATCTGAAAATGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTACCACACTGCACAGTCCCAGATGATGTTT	out-of-frame	RPPNPPKPMPNPNPNHPSSS|gavtnen*	.
TALL042	HERC2	ATP10A	-/-	-/-	15:28130163	15:25727266	splice-site	splice-site	deletion	upstream	downstream	1	0	0	165	61	low	.	.	.	CTGTAAAGTGCCTATGAAG___ATTGATTCTCTTACTGGTCTTGGAGTAGTTAAAGTGGAATGCGGATCCCAGTTTTCTGTTGCCCTTACCAAATCTGGAGCTGTTTATACCTG___GGGCAAAGGCGATTATCACAGG...CAAGGGTTGCAGGGGAAGAAAGTCATCGCCATCGCCACTGGCTCCCTGCACTGTGTGTGCTGCACAGAGGATG|CATACATGACAACGGGAAAAAGGCCGGGCTGTATAAAGAAAACCTGCTGCTGAGGGGCTG	out-of-frame	QGLQGKKVIAIATGSLHCVCCTED|aymttgkrpgcikktcc*	.
TALL042	INPP5A	PPP2R2D	+/+	+/+	10:132726905	10:131955684	splice-site	splice-site	duplication	downstream	upstream	1	0	0	40	269	low	.	.	.	AGAAAAGGCTTCATCCGGACGAGGTGGTGCATTGCAGACTG___TGCCTTTGACTTGGTGAAaATCCATCTTTTCCATGATGCTTCCAATCTGGTCGCCTGGGAAACAAGCCCTTCCGTGTACTCGGGAATCCGGC...CAGCGATTCGAGAAGGTTTCCTACTTTGTATTTGGTGATTTCAACTTCCGGCTGGATTCCAAGTCCGTCGTGGAG|CGCCATCATGACCGGGTCCTATAACAACTTCTTCAGGATGTTTGATAGAGACACGCG	out-of-frame	QRFEKVSYFVFGDFNFRLDSKSVVE|rhhdrvl*	.
TALL042	INPP5A	PPP2R2D	+/+	+/+	10:132697919	10:131955684	splice-site	splice-site	duplication	downstream	upstream	0	1	0	56	269	low	.	.	.	GAAAGGTCGCTGGCAAAGAGATCTACTCGGATACCTTAGAGAGCACGCCCATGCTGGAGAAGGAGAAGTTTCCGCAGGACTACTTCCCCGAG|CGCCATCATGACCGGGTCCTATAACAACTTCTTCAGGATGTTTGATAGAGACACGCGGAGGGATGTGACCCTGGAGGCCTCGAGAGAGAGCAGCAAACCGCGCGCCAGCCTCAAACCCCGGAAGGTGTGTACGGGGGGTAAGCGGAG	out-of-frame	KVAGKEIYSDTLESTPMLEKEKFPQDYFPE|rhhdrvl*	.
TALL042	CUX1	SMO	+/+	+/+	7:101916225	7:129203384	splice-site	splice-site	deletion	downstream	upstream	0	1	0	292	74	low	.	.	.	TGAAAGTGAGCAGTCCAGAAAGCGGCTTATCGAACAGAGCCGGGAGTTCAAGAAGAACACTCCAGAG|GCCTCCGGAATGCCCCCCGCTGCTGGGCAGTGATCCAGCCCCTGCTGTGTGCCGTATACATGCCC...GCGGGGCTGGCCTGACTTCCTGCGCTGCACTCCTGACCGCTTCCCTGAAGGCTGCACG___AATGAGGTGCAGAACATCAAGTTCAACAGTTCAGGCCAGTGCGAAGTGCCCTTGGTTCGGACAGACAACCCCAAG	out-of-frame	ESEQSRKRLIEQSREFKKNTPE|asgmppaagq*	.
TALL042	TTC7B	FOXN3	-/-	-/-	14:90816175	14:89412490	splice-site	splice-site	deletion	upstream	downstream	0	1	0	54	261	low	.	.	duplicates(1)	CGGAGATCGAGCGCTGCCGCTCCGAGTGCCAGTGGGAGCGGATCCCTGAGCTCGTCAAGCAGCTGTCGGCCAAGCTCATCGCCAACG|GAGCCTTCACGTAAATGGGTCCAGTCATGCCTCCCAGTAAGAAGCC...CAGTGTTACGGGGGCAGCGGTTTCTCCAAGGCCCTTCAGGAAGACGATGACCTCGACTTTTCTCTGCCTGACATCCGATTAGAAGAGGGGGCCATGGAAGATGAAGAGCTGACCAACCTGAACTGGCTGCACG	out-of-frame	EIERCRSECQWERIPELVKQLSAKLIAN|gaft*	.
TALL042	TBC1D22A	CERK	+/+	-/-	22:47111603	22:46721015	splice-site	splice-site	inversion	downstream	downstream	0	1	0	51	185	low	.	.	.	GGAAATACTAGAAGAAAAAGATTTTCAA|ATGCCTGCTCTGTGCCTGTATCTGAGATCATCGCCGTTGAGGAAACAGACGTTCACGGGAAACATCAAGGCAGTGGAAAATGGCAGAAAATGGAAAAGCCTTACGCTTTTACAG___TTCACTGTGTAAAGAGAGCACG	out-of-frame	EILEEKDFQ|mpalclylrssplrkqtftgnikavengrkwksltllqftv*	.
TALL042	TBC1D22A	CERK	+/+	-/-	22:46762848	22:46721015	splice-site	splice-site	inversion	downstream	downstream	0	1	0	147	185	low	.	.	.	GGATGAGGAGGGGCCATGGCCAGCGACGGGGCCAGGAAGCAATTCTGGAAGCGCAGCAACAGCAAGCTCCCGGGCAG|ATGCCTGCTCTGTGCCTGTATCTGAGATCATCGCCGTTGAGGAAACAGACGTTCACGGGAAACATCAAGGCAGTGGAAAATGGCAGAAAATGGAAAAGCCTTACGCTTTTACAG___TTCACTGTGTAAAGAGAGCACGACGGCACCGCTGGAAGTGGG	out-of-frame	MASDGARKQFWKRSNSKLPGr|cllcaci*	.
TALL042	UVSSA	DOT1L	+/+	+/+	4:1351833	19:2229783	splice-site	splice-site	translocation	downstream	upstream	0	1	0	30	273	low	.	.	.	GAAGCACTTGGATAAAATTTATCAAGAAAGAGCCAGCCAGGCGGAGAGGGAGATGCA|AGGTAACTAGGATTTCTACCTCAACCGCGAGACCTATGCAAGGACGGTGTGGACCgACTCGCGCCCGCGGCATGGT...TTTTAAAAAGTATAAACAATTCTGACTTATTTTATTCCATCTAAGTGGTAAAAGGCAACTTATTGAGAAATATAAATATCTATATATGAGAGCTCTATATAAAGACACGTGTCTGCAGGGCGGGCCCGCCAG	in-frame	KHLDKIYQERASQAEREMq|GN*	.
TALL042	PNPLA7	DOT1L	-/-	+/+	9:137519917	19:2229785	splice-site	splice-site	translocation	upstream	upstream	0	1	0	43	273	low	.	.	.	GGGAAGGCCAAGAAGCAGGTGTTCTATGGCGAAGAAGAGCGGCTTAAAAAGCCACCGCGGCTCCAGGAGTCCTGTGACTCAG|GTAACTAGGATTTCTACCTCAACCGCGAGACCTATGCAAGGACGGTGTGG...GGACGGCAGAGGCAAGGACGGACGGGAGCTCCACTGTGAATCGGCGGCACGCGCCGCAGGAGGCTGGGACTGGTCCAGTTTGTACTGTCGATAGTTTTAGATAAAGTATTTATCATTTTTTAAAAAGTATAAA	in-frame	GKAKKQVFYGEEERLKKPPRLQESCDS|gN*	.
TALL042	DOT1L	PNPLA7	+/+	-/-	19:2194577	9:137484736	splice-site	splice-site	translocation	downstream	downstream	0	1	0	212	78	low	.	.	.	AGACCATGGACCGCGAGTTCAGGAAGTGGATGAAATGGTATGGAAAAAAGCATGCAGAATACACA|GCCACCAGCTTGGGCTCCCCACGGAGGGCAGCAAGTGGGACTTGGGGAACCCGGCTGTCAACCT...CCGCTGCCCTGGACAG___TcTTCACGAGTACCGGCTGTCCAGCTGGCTGGGGCAGCAGGAGGACACCCACAGGATCGTGCTCTACCAGGCAGATGGCACGCTCACACCCTGGACCCAGCGCTGCGTGCGC	out-of-frame	TMDREFRKWMKWYGKKHAEYT|atslgsprraasgtwgtrlst	.
TALL042	CCR9	TMEM248	+/+	+/+	3:45897646	7:66953226	splice-site	splice-site	translocation	downstream	upstream	0	1	0	71	144	low	.	.	.	CCCTCGCTGGCCCAGGAATCCATCTCCTTCCAGGACCTTAGCCCAGGACTAACACA|GATGACCGTTCATTAATAAATTTGCATCTCATGCACACCAGTTACTTCCTCTTTGTGATGGTGATAACAATGTTTTGCTATGCTGTTATCAAGGGCAGACCTAGCAAATTGCGTCAGAGCAATCCTGAATTTTGTCCCGAGAAG___GTGGCTTTGGCTGAAGCCTAATTCCACAGCTCCTTGTTTTTTGAGAGAGACTGAGAGAACCATA	out-of-frame	PSLAQESISFQDLSPGLTq|mtvh*	.
TALL042	DLEU2	HCFC1	-/-	-/-	13:50125302	X:153964726	splice-site	splice-site	translocation	upstream	downstream	0	1	0	75	244	low	.	.	.	CGTGCCTTTCCGCGCGAGCCCAGAGCTCCGATCCCTGCGCGGGCTCGAGAGCTCGCCCCGAACGGGGGTCTTCCTCCTCCGCCGTTGACAG|CAACCAACCAGTGGTTCATCCCAGCCGTGAGGGGGGACATTC...CGCCTCCTGGTGTTTGGTGGGATGGTGGAGTATGGGAAATACAGCAATGACCTCTACGAACTCCAGGTAAAGCAGCCCCAGGTTCTCACTCTGCCTCCTTGGCCCCATGTGACCTGACGGTAGTGGCTTCAG	.	.	.
TALL042	TRPM7	ZMYM2	-/-	+/+	15:50589592	13:20026612	splice-site	splice-site	translocation	upstream	upstream	0	1	0	131	222	low	.	.	.	GGATTTACAGAGGTTTAAAGAAACATCAAACAAGATAAAAATACTATCC|AAATATGGAAAACTGACAACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGTATAGGTCCTAATGGATATATGGAGCCATATTGTTCAACTGCTTGTATGAACAGTCACAAGACAAAATATGCAAAATCACAAA___GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTT	in-frame	DLQRFKETSNKIKILS|KYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNS	.
TALL042	CKAP5	FNBP4	-/-	-/-	11:46795594	11:47746394	splice-site	splice-site	duplication	upstream	downstream	0	1	0	141	414	low	.	.	.	GGACATTTCTGCACCCAAACCAGGACCTCTAAAAAAGGCACCTGCTGCTAAG|GAAGTAAATGAAGGAATTCAGGCTCTCTCAAATAGTGAGGAGGAGAAGAAAGGGGTGGCAGCATCGCTGCTTGCTCCTTTATTGCCTGAGGGAATAAAAGAAGAAGAAGAGAGATGGAGAAGAAAAGTAATTTGTAAAG	in-frame	DISAPKPGPLKKAPAAK|EVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICK	.
TALL042	SNHG5	CXXC5	-/-	+/+	6:85677424	5:139680364	splice-site	splice-site	translocation	upstream	upstream	1	0	0	1774	406	low	.	.	.	CGAGTAGCCAGTGAAGATAATGAATGTCGAATGTGACTGACTAGCAGCTTCATTTTGAA___TGAGGGTCGCTGTCTGCCCATTGATAGAGGCCAGATTGTCTTGGAAGTTCCAAAGTTGCAACGATTTCT|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGG	.	.	.
TALL042	CLASRP	NUP62	+/+	-/-	19:45040311	19:49909884	splice-site	splice-site	inversion	downstream	downstream	0	1	0	597	224	low	.	.	.	GCGGAAGCTTCGAGGCATGATGGTCGACTACAAGAAGAGGGCGGAGCGGAGACGGGAGTATTATGAAAAGATC|AAATCTTCCCAAGGCTGCAGACACCGACGGATTTGCTTTGGGAGCCAGAGTAGCTGCCGCCACCAGAGTCCGGAGCCATGAGCGGGTTTAATTTTGGAGGCACTGGGGCCCCTACAGGCGGGTTCACGTTTGGCACTGCAAAGACGGC	out-of-frame	RKLRGMMVDYKKRAERRREYYEKI|kssqgcrhrricfgsqsscrhqspep*	.
TALL042	STK17B	SUB1	-/-	+/+	2:196156439	5:32601005	splice-site	splice-site	translocation	upstream	upstream	1	0	0	536	1089	low	.	.	.	CAGGATTGTCGgGCAGAAATTTTACACGAGATTGCTGTGCTTGAATTGGCAAAGTCTTGTCCCCGTGTTATTAATCTTCATGAGGTCTATGAAAATACAAGTGAAATCATTTTGATATTGGAATA|GTATTTCTTTAAATCCAGAACAATGGAGCCAGCTGAAGGAACAGATT	out-of-frame	QDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILE*|yffksrtmepaegtd	.
TALL042	TIAL1	EIF3E	-/-	-/-	10:119596434	8:108217460	splice-site	splice-site	translocation	upstream	downstream	0	1	0	482	2127	low	.	.	.	CCCAACCCTGCCCTCCCCCTTGTCCCGGGATCGCTCCGTCGCACCCACCATGATGGAAGACGACGGGCAGCCCCGGACTCT|ATATCTTAATGCAATTCAGACAATGTGTCCACACATTCTTCGCTATTTGACT...GCAGTCATAACAAACAAGGATGTTCGAAAACGTCGGCAGGTTCTAAAAGATCTAGTTAAAGTTATTCAACAG___GAGTCTTACACATATAAAGACCCAATTACAGAATTTGTTGAATGTTTATATGTTAACTTTG	in-frame	MMEDDGQPRTl|YLNAIQTMCPHILRYL	.
TALL042	PCNT	ZDHHC7	+/+	-/-	21:46324282	16:84996007	splice-site	splice-site	translocation	downstream	downstream	0	1	0	288	59	low	.	.	.	AGTTGAGCAAGAGCAGCGGCGCAGAAAGGTGGAGGCCGGGAGGACGAAG|ATCCGATCACATAGGACAGTATGCACCTTAAGATCCTGAAGAAACGGCACAAAATGTTCAAGTGATGTTTAGAAATAACTTGTGAG___GGTGCGTCAGGGAAATCATGCAGCCATCAGGACACAGGCTCCGGGACGTCGAGCATCATCCTCTCCTGGCTGAAAATGACAACTATGACTCTTCATCGTCCTCCTCC	out-of-frame	VEQEQRRRKVEAGRTK|irshrtvctlrs*	.
TALL042	CCT2	RAP1B	+/+	+/+	12:69585524	12:68654112	splice-site	splice-site	duplication	downstream	upstream	0	1	0	811	1888	low	.	.	.	CGAGCACGAGCTGTGAGGGGATTCACTTGTGTGCGGAACTCCTCGGAACCATG|GAGCAATTTACAGCAATGAGGGATTTATACATGAAAAATGGACAAGGATTTGCATTAGTTTATTCCATCACAGCACAGTCCACATTTAACGATTTACAAGACCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGATGAT___GTTCCAATGATTCTTGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGGAAG	in-frame	M|EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVG	.
TALL042	SCART1	NUBP2	+/+	+/+	10:133454064	16:1787677	splice-site	splice-site	translocation	downstream	upstream	0	1	0	395	206	low	.	.	.	CTGGACCCTGGGACTCGGGCCCCTTCTTCTGAATCTCTGGGCAGTCCCCATTG|CGCTGATAAAGCAGTTTGTGTCCGACGTGGCCTGGGGGGAGCTGGACTACCTGGTGGTGGACACGCCCCCGGGGACCTC...CCAG___GCGGTGTCCGTGGGGGACGTGAGGCGCGAGCTGACCTTCTGTAGGAAGACGGGCTTGCGGGTGATGGGAATCGTGGAGAATATGAGCGGCTTCACCTGCCCACACTGCACG___GAGTGCACCAGCGTCT	.	.	.
TALL042	RPTOR	KPNA2	+/+	+/+	17:80754185	17:68043838	splice-site	splice-site	duplication	downstream	upstream	0	1	0	86	1115	low	.	.	.	CCCGACCTCCCGGCTGACCTATTCACCTCCTGCCTCACCACCCCCATCAAGATCGCCCTGCGCTG|ACTCCTGCCCTAAGAGCCATAGGGAATATTGTCACTGGTACAGATGAACAGACTCAGGTTGTGATTGATGCAGGAGCACTCGCCGTCTTTCCCAGCCTGCTtACCAACCCCAAAACTAACATTCAGAAGGAAGCTACGTGGAC	out-of-frame	PDLPADLFTSCLTTPIKIALR*|llp*	.
TALL042	DENR	BCL7A	+/+	+/+	12:122753807	12:122054805	splice-site	splice-site	duplication	downstream	upstream	1	0	0	609	581	low	.	.	.	GTTGGTTCAGCTGGCGATAGCGGCGGGAGCGGAGCCGGCGGGGCCTGTGCGACCGCCTGG___GTTTGTGAAATGGCTGCTGACATTTtTGAATCCAGCGGGGCTGACTGCAAAGGAGACCCAAGGAACAGTGCCAAGTTAGATGCCGATTACCCACTTCGAGTCCTTTATTGTGGAG|ATGCTTCTGATGAGCAGAATTCACAGTCCTCGATGGAACATTCGATGAACAGCTCAGAGAAAGTAGATCGGCAG	in-frame	MAADIfESSGADCKGDPRNSAKLDADYPLRVLYCG|dASDEQNSQSSMEHSMNSSEKVDR	.
TALL042	SF3A2	NME4	+/+	+/+	19:2236901	16:398990	splice-site	splice-site	translocation	downstream	upstream	0	1	0	1256	428	low	.	.	.	GCCCGCCGTTCGCCAAACGAAGTCGTGGAGGTGGCGAAACGAGGAGGAGATAACGCGGCCTTGGGCTCTG|GAGGGCCCTCCTGGACCCGGGAGCGGACCCTGGTGGCGGTGAAGCCCGATGGCGTGCAACGGCGGCTCGTTGGGGACGTGATCCAGCGCTTTGAGAGGCGGGGCTTCACGCTGGTGGGGATGAAGATGCTGCAG___GCACCAGAGAGCGTCCTTGC	.	.	.
TALL042	PAN3	KTN1	+/+	+/+	13:28139087	14:55667241	splice-site	splice-site	translocation	downstream	upstream	0	1	0	599	425	low	.	.	.	GCGGGGGACTCGATGGACCGCGGCTGGCAA|GAAAGGCAGCAACAGGTGGAAGCTGTTGAGTTGGAGGCTAAAGAAGTTCTCAAAAAATTATTTCCAAAGGTGTCTGTCCCTTCTAATTTG___AGTTATGGTGAATGGTTGCATGGATTTGAAAAAAA[a]GGCAAAAGAATGTATGGC	out-of-frame	GGLDGPRLA|rkaatggsc*	.
TALL042	ANKRD10	ARHGEF7	-/-	+/+	13:110914725	13:111300748	splice-site	splice-site	inversion	upstream	upstream	0	1	0	743	745	low	.	.	.	GCCCACCTGGCCTCTGAGGACTCCTTtTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAG|GTTCACGCAAAGAATCTGCTCCACAAGTTTTGCTTCCAGAAGAAGAGAAAATTATAGTGGAAGAAACTAAAAGTAATGGTCAGACAGTGATAGAAGAAAA___GAGTCTTGTGGATACCGTATATGCATTAAAGGATGAAGTTCAAGAATTAAGACAG___GACA	out-of-frame	AHLASEDSFYGWTPVHWAAHFGK|vhaknllhkfcfqkkrkl*	.
TALL042	ANKRD10	ARHGEF7	-/-	+/+	13:110914725	13:111205289	splice-site	splice-site	inversion	upstream	upstream	0	1	0	743	1010	low	.	.	.	CCACGCTCTGCTCGCTGCTGCAGCAGACACCCCACGCCCACCTGGCCTCTGAGGACTCCTTCTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAG|ACGTTTGATGCAAATGATTTGTATCAGGG...TTGAGAGATTTTGTTACTTAAATATGTTTGGGAAGGATATGAGTGTGTATGGATATATCTGAGAAGATACGTATGCCTCCATTAATGGTGTTAAACAGGGCAAAGGTAGCTGGACTTCGCCTCCGTTGTGCC	in-frame	TLCSLLQQTPHAHLASEDSFYGWTPVHWAAHFGK|TFDANDLYQ	.
TALL042	HMGB2	VEZF1	-/-	-/-	4:173334274	17:57983395	splice-site	splice-site	translocation	upstream	downstream	0	1	0	3479	129	low	.	.	duplicates(1)	GGAAGCGTCTCCGTTGGGTCCGGCCGCTCTGCGGGACTCTGAGGAAAAGCTCGCACC|AGGCCCATGAAGCTTCCCATCACCAACAGCAGGCAGCACAGAACAGCTTGCTGCCCCTCCTGAGCTCTGCCGTGGAGCCCCCTGATCAGAAACCATTGCTTCCAATACCAATAACTCAGAAACCTC	.	.	.
TALL042	RGS1	SPTBN1	+/+	+/+	1:192575929	2:54664453	splice-site	splice-site	translocation	downstream	upstream	0	1	0	4432	1192	low	.	.	.	AAAGGAACCACTCATTCACTTCTAGACGACAAAATGCAAAAAAGGAGGCCAAAGACTTT|ATGGCAGAAACGGTGGACACAAGCGAAATGGTCAACGGCGCTACAGAACAAAGGACGAGCTCTAAAGAGTCCAGCCCCATCCCCTCCCCGACCTCTGATCGTAAAGCCAAGACTGCCCTCCCAGCCCAGAGTGCCGC	out-of-frame	KGTTHSLLDDKMQKRRPKTl|wqkrwtqakwstalqnkgralkspapspprplivkprlpsqprvp	.
TALL042	RGS1	SPTBN1	+/+	+/+	1:192575929	2:54644323	splice-site	splice-site	translocation	downstream	upstream	1	0	0	4432	456	low	.	.	.	CACCATGCGCGCAGCAGCCATCTCCACTCCAAAGTTAGACAAAATGCCAGGAATGTTCTTCTCTGCTAACCCAAAGGAATTGAAAGGAACCACTCATTCACTTCTAGACGACAAAATGCAAAAAAGGAGGCCAAAGACTTT|GAAGGAATGCAGCTCATTTCAGAAAAGCCTGAGACGGA	out-of-frame	MRAAAISTPKLDKMPGMFFSANPKELKGTTHSLLDDKMQKRRPKTl|kecssfqkslrr	.
TALL042	SLC38A1	SLC38A2	-/-	-/-	12:46268526	12:46371379	splice-site	splice-site	duplication	upstream	downstream	0	1	0	81	1203	low	.	.	.	CGGAAGGGCGGACACCTCCACATCGCCTTTTGCCACCTTTCCCTTTATTTCCGGAG|GCCGACTCGCGGGCCGCTGCACCCACCGCCAAGGACAAAAGGAGCCCAGCGCTACTAGCTGCACCCGATTCCTCCCAGTGCTTAGCATGAAGAAGGCCGAAATGGGACGATTCAGTATTTCCCCGGATGAAGACAGCAGCAGCTACAGTTCCAACAGCG	.	.	.
TALL042	SLC38A1	SLC38A2	-/-	-/-	12:46268865	12:46371379	splice-site	splice-site	duplication	upstream	downstream	0	1	0	226	1203	low	.	.	.	GGAAGGGCCACGCGTCCCCCAGTAGGAGAATGACTCCGATTCGTGACCCTCAGCGCCGGTGCATGTCGAT|GCCGACTCGCGGGCCGCTGCACCCACCGCCAAGGACAAAAGGAGCCCAGCGCTACTAGCTGCACCCGATTCCTCCCAGTGCTTAGCATGAAGAAGGCCGAAATGGGACGATTCAGTATTTCCCCGGATGAAGACAGCAGCAGCTACAGTTCCAACAGCGACTTCAACTACTCCTACCCCACCAAGCAAGCTGC	.	.	.
TALL042	FAM207A	PTTG1IP	+/+	-/-	21:44943837	21:44851627	splice-site	splice-site	inversion	downstream	downstream	1	0	0	98	5733	low	.	.	.	GCTCCGCCGGGAAGATGGGGAAAGTGAGGGGGTTGCGCGCCCGAGTGCACCAGGCTGCCGTGAGGCCGAAAGGGGAGGCCGCCCCCGGCCCCGCGCCCCCTGCCCCGGAGGCGACCCCTCCGCCGGCCTCGGC...GACGTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTCGAGTGCACGGAGCGTCCCTTCCATCAGGAGAG|GCCTGTTTAAAGAAGAAAACCCGTATGCTAGATTTGAAAACAACTAAAGCGCTC	out-of-frame	DVRSVTSVRRGEAGSSARSVPSIRR|glfkeenpyarfenn*	.
TALL042	FAM207A	PTTG1IP	+/+	-/-	21:44943792	21:44851627	splice-site	splice-site	inversion	downstream	downstream	1	0	0	173	5733	low	.	.	.	CGAAAGGGGAGGCCGCCCCCGGCCCCGCGCCCCCTGCCCCGGAGGCGACCCCTCCGCCGGCCTCGGCCGCGGGGAAG___GACTGGGCGTTCATCAACACCAACATCTTTGCCAGGACCAAGATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAG|GCCTGTTTAAAGAAGAAAACCCGTATGCTAGATTTGAAAACAACTAAAGCGCTCCAGCACATCAGTCCCG	out-of-frame	KGEAAPGPAPPAPEATPPPASAAGKDWAFINTNIFARTKIDPSALVQKLELDVRSVTSVRR|glfkeenpyarfenn*	.
TALL044	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	23	34	5	2117	526	high	.	.	duplicates(28),low_entropy(7),mismappers(3),mismatches(5)	GTTTGCTCTGGAATTTTCTGATTCTTTGATGTTGCAAGGTGAAATAACTCATCAGTCAGCATCCACTCTAGCCTGAGATTTCACATCACTCCCTTAAGTCTGAAATAACATTCACAAAGATTTCTGCAGGAGCCAAATTTGGTTGGTGGTGTTGTCACAGTGAGGCTCTTTGGGCTGTGCGGCACCTCATGACCATATTGGCTACACCCATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTTGACCCTGTGAGACCCTAAGGACCCAGCCCTCTCCTAGCCTGTGGACCACATCCCTGTGAGCTCATAAAGG	out-of-frame	llwnflil*cckvk*lisqhpl*peishhslkseitftkisagakfgwwcchsealwavrhlmtilatpivfaasnqtfvfisltl*fqRHYNDEDPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssiclhfdpvrp*	.
TALL044	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	16	27	13	161	148	high	.	.	duplicates(16),low_entropy(3),mismatches(6)	GAAATCTCCCCCTCGGTACTTCTTGGCTGTTTGG___...AG...___...GGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGG	.	.	.
TALL044	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	21	14	4	500	92	high	.	.	duplicates(9),low_entropy(4),mismappers(2)	GCCGTTTCAGGCGAGGGGCGCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATGGGCCACCATGTGCCAGCACCATGCCTCCAAGAGAAAGAGTCATCCCACTGACCTGTGGGGTCTCCTGCCAGACCTGGACCAGCTCACCTGGAGTCAGGGCCTGCTCCACCTCCAAGTCCTGCATGTAGCCTGGAACTGTGTAGCTGCTGTGGTCATCAGGCAGAGTGGAGCTGCTGAGTCCATCAGAGAAGGTATCAGGGCTGGAATCCCCACATGACTGTCGAGGGAGAAAGCAGCTTAGGCCCAGGCCCACCTTAGCATTTCTTCCACTGCTCACCCT	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL044	RP11-421L21.3(44106),SCARNA16(1779)	DPH5	./-	-/-	1:101131374	1:101021765	intergenic	splice-site	deletion/read-through	upstream	downstream	3	11	0	178	235	high	.	.	duplicates(5),low_entropy(1)	GATTAAGCCAAGGCACTGAGCAGGGCTGAGCCTGCAAACTGAAGTCCCTCAGTTCTACGCCTGAGCAAG|GAAGAGTTTTATGGAAGAAAATTGGTTGTTGCTGATAGAGAAGAAGTGGAACAAGAAGCAGATAATATTTTAAAGGATGCTGATATCAGTGATGTTGCATTCCTTGTGGTTGGTGATCCATTTGG___GGCCACAACACACAGTGATCTTGTTCTAAGAGCAACAAAGCTGGGAATTCCTTATAGAGT...___ACACTTGGAGACCAGAAAGCTTCTTTGACAAAGTGAAGAAGAACAGACAAAATGGCA...ACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAA___GGGAAGGAAGATCTATGAACCgCCACGGTATATGAGTGTAAACCAAGCAGCtCAGCAGCTTCTGGAGATTGTTCAAAAT	.	.	.
TALL044	PICALM	MLLT10	-/-	+/+	11:85974708	10:21586294	splice-site	splice-site	translocation	upstream	upstream	0	2	4	112	54	high	.	.	.	AAAGAAGTTAACTGGGGGATCTAACTGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCTGCAACAATG___CCTCCACAAATGGGAAGTGTTCCTGTAATGACGCAACCAACCTTAATATACAGCCAGCCTGTCATGAGACCTCCAAACCCCTTTGGCCCTGTATCAGGAGCACAG|AGATGTGAACTTTGTCCCCATAAGGATGGAGCTTTAAAAAGAACAGATAATGGGG___GTTGGGCCCATGTGGTTTGTGCCCTGTATATTCCAGAGGTACAATTTGCCAATGTTTCCACAATGGAACCAATTGTTTTACAGTCTGTTCCGCATGATCGTTATAATAAG___ACTTGCTACATTTGTGATGAACAAGGAAGAGAAAGCAAA...CGACAGGCTTTCCATGTAACATG___CGCTCAGTTTGCCGGACTGCTTTGTGAAGAAGAAGGTAATGGTGCCGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG___AAAAAGAGCAAACGGG	in-frame	KKLTGGSNWQPKVAPTTAWNAATMPPQMGSVPVMTQPTLIYSQPVMRPPNPFGPVSGAQ|RCELCPHKDGALKRTDNGGWAHVVCALYIPEVQFANVSTMEPIVLQSVPHDRYNKTCYICDEQGRES	.
TALL044	MLLT10	ADD3-AS1	+/+	-/-	10:21538912	10:110065036	splice-site	intron	inversion	downstream	downstream	0	1	1	147	12	high	.	.	mismappers(1)	GGTTTTGCAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG|GGTCTCGCTCTGTCGCCTAGACAAGATCTCAGCTCACTGCAACCTCTGCTTCCCAGGTTCAAGCGATCCTCCCACTTCAGCCTCCTGCATAGCTAGGACTACAG___GTGTGGATTCTGCAATGCTGCACAGAAACCTACTGCAGCCTCAGACCAACAGCAGCAGCAGCAGCGGCGGCGGCGGCAGCAGCAGCAGCA---TTAGCAGCAGCAGCTTCTCTCAATGCTGAGTA___TTGAATACAGATAATCATGAGGCCCAAGAC	out-of-frame	FCRKCESQERAARV|glalsprqdlsslqpllprfkrsshfsllhs*	.
TALL044	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	5	21	3	67	44	medium	.	.	duplicates(7),low_entropy(2)	CGGGGAGGAGGTGCAGGGCCTGGCCAGAGCGGGCCTGGCCACGGGCAAGGGACAGCGACCCCCGGGCCAGGACAGGTGAGAGCGGCGCAGGCCCGGGCCCGGCGTGGCGGAGGTGCGCGTGAGCGGCC...CGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCC...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATAC...ATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGGGTAGAGATACAT	.	.	.
TALL044	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	3	6	2	23	23	medium	.	.	duplicates(4),low_entropy(4),mismatches(1)	GGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTCTGGGC...GGGACAGACGGGGATGCGTGCACATGTGTGTGCATGGGTGCATACGTGTAGGGACGTGCATGACCTCTGAGCAAGGCAGAGGGTATTGAAGAAAGCATTGGCCTCTCACTCCCTCATGGGTTC	out-of-frame	DDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL044	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	6	3	0	299	37	medium	.	.	duplicates(4),low_entropy(2),mismappers(3),mismatches(1)	CAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCA	.	.	.
TALL044	ADD3	MLLT10	+/+	+/-	10:110117623	10:21557345	intron	intron	inversion/3'-3'	downstream	downstream	1	0	5	13	12	medium	.	.	duplicates(2)	CCTATATCTCA___GTAAGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTATCTTTTTCTGAAGCTACAGCCTCCAATTTGGTATAATTTTCCATTCCTGTGTTGCTTTTTCTGAGCTTTCTTTGGCTTTTCTGACAGTTCTTAGCTTTTAGCACAGGACAGAATAAGAAGGTATGGATGGAAAAACATTTACTAGTGAACAGTGAAGGGAATTTGAACTATGTTGTTTTAGGGAAAAGCTTTAGAGAATAGCGTAATTGAAGAGACTAATAAATGAGTTGG|c|CcTGGATCTTTTATGTTAAGAGTCACTGAAGAACAAAATGGACAGTGTCCATGATGAAAGTGTTATATCAAATACAGATTTCATAAACTATTACTTATAATAACTGAGTTATAACTCAATCATTAAGCACAAGGGGAAAAATAACAACACAGTAGGCATTTGAAGAAGTGAATCAACTAGTTTTATTTTTTCAGGAAGTTTAACAGCGAAGAGGAAAAGACAAAAGGGC	out-of-frame	YISVRISKEQDHIIIIPRGLSFSEATASNLv*fsipvllflsflwlf*qflafstgqnkkvwmekhllvnsegnlnyvvlgksfre*rn*rd**msw|pwifyvksh*	.
TALL044	C16orf59	CCNF	+/+	+/+	16:2462475	16:2458157	CDS	3'UTR	duplication	downstream	upstream	1	2	0	36	34	medium	.	.	.	ATGCAGACAGCTGTATCCTTGCTGGGCTTGTGGGAGCCCTGGGGGCCTCTAGCTCTGAACCTGGCAGGTTTGCAGAGCAGCCCCAGGAGGGGCTGGCGTGGGATGGCCAGGGCCACTCCCCAGGCCCCGTTCT...GCAGAGGGGCTTTGGCTGCAGGGAAGTTTTCCTGACCCATATCCAGTCAGGCGGGCCCCAGCCCAGGCTCAGTGCTGTGGAGGTGGAGGCGGAGGCGGGGCGCCTGC|GGAACGGGCTGACCACAACACACCCTGCTGCCATCCACTTCTGTTTACTCTGCAAATGTAAGAAAGAACCACTTGGCCAGAAGTGTCCCCC...TTTTTTTTGGAGACAGTTTTGCTCTTGTCTCCCCGGCTGGAG...CGCCTCCCGGcTACTCCTGCCTCAGCCTCCTGGGTAGCTGGGATTACAAGCACCCAACCACGCCCAGCTAATTTTTGTATTTTCGGTAGAGACGGGATTTCACCATGTTGGCCAG	out-of-frame	qrgfgcrevflthiqSGGPQPRLSAVEVEAEAGRL|rnglttthpaaihfcllckckkeplgqkcp	.
TALL044	HLA-J	HLA-A(1798),HLA-W(8914)	+/+	./+	6:30009177	6:29947682	splice-site	intergenic	duplication	downstream	upstream	0	3	0	1047	173	medium	.	.	duplicates(1)	CAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAA|AAGCCTGATAcGGCTAAAGAATGAATGGAATTACTCCAGACTTGACCAAGTAGGAGTCCTGATTGCAGCTGCCATGCTGGCTGGATATCACTGCCTGGGGAGATTAATAAGGCCTCAGGCACATGGCAAGCAGCTGTGGATTTG___CTTGCATCAGGGCTACCTTAACTCCTCAACCTTCTATAAATATCACCTTAAGAGAC	.	.	.
TALL044	C5orf56	RAD50	+/+	+/+	5:132449689	5:132556332	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	1	0	500	9	medium	.	.	duplicates(2),mismappers(2),mismatches(1)	CCGTTTCAGGCGAGGGGCGCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ATATCTATTGCTGGGAGCACTGATCGGAATGGATTACCTCTACATTCTTCATATTTGCAGACTGCTTTTAGTTTTAGTTCCCAGACTTTTGGTCTTAAAGACGC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|diycweh*	.
TALL044	CDKN2A	CDKN2A	-/-	-/-	9:21970902	9:21971208	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	18	27	7	648	601	low	.	.	duplicates(13),same_gene(4),small_insert_size(3)	TGGGCAGCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCCAACTGCGCCGAtCCCGCCACTCTCACCCGACCCGTGCACGACGCTGCCCGGGAGGGCTTCCTGGACACGCTGGTGGTGCTGCACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCCTGGGGCCGTCTGCCCGTGGACCTGGCTGAGGAGCTGGGCCATCGCGATGTCGCACGGTACCTGCGCGCGGCTGCGGGGGGCACCAGAGGCAGTAACCATGCCCGCATAGATGCCGCGGAAGGTCCCTCAG|GTCATGATGATGGGCAGCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTCACCCGACCCGTGCACGACGCTGCCCGGGAGGGCTTCCTGGACACGCTGGTGGTGCTGCACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCCTGGGGCCGTCTGCCCGTGGACCTGGCTGAGGAGCTGGGCCATCGCGATGTCGCACGGTACCTGCGCGCGGCTGCGGGGGGCACCAGAGGCAGTAACCATGCCCGCATAGATGCCGCGGAAGGTCCC	in-frame	GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS|gHDDGQRPSGGAAAAPRRGAQLRRPRHSHPTRARRCPGGLPGHAGGAAPGRGAAGRARCLGPSARGPG*	.
TALL044	LZTFL1	SLC6A20	-/-	-/-	3:45826252	3:45782219	3'UTR	CDS	deletion/read-through	upstream	downstream	0	3	19	1153	187	low	.	.	duplicates(13),inconsistently_clipped(1),low_entropy(1),mismappers(30)	GAAAACCAGAAGTCACTGGAGGAGAATCTGGCGACAGCCAAGCACGATCTACTCAGGGTTCAGGAGCAGCTGCACATGGCTGAAAAG___GAATTAGAAAAGAAATTTCAGCAAACAGCAGCTTATCGAAACATGAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGGtA|g|TTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCG___GCGGAGTTTCGCTCTTATTGCCCAGGCTG...___GGGTCGCCAGCGTGGTGGTCTCTTTCTTCCTCTCCATGTACTACAACGTCATCAACGCCTGGGCCTTCTGGTAC...___GATCCCCTGCCGTGGTCTGTCTGCCCACTGAATGGTAACCACACGGGCTACGATGAGGAGTGccAGAAGGCGTCCTCCACACAGTACTTCTGGTACAGGAAAACCCTCAATATCTCGCCG	out-of-frame	ENQKSLEENLATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED*n*rfpleattckhtssltsg|s|FLVPYIIMLIVEGMPLLYLELAVGQRMRQGSIGAWRTISPYLSGVggvslllpr	.
TALL044	PXDN(28539),MYT1L(15722)	PXDN	./-	-/-	2:1773391	2:1693134	intergenic	splice-site	deletion/read-through	upstream	downstream	8	1	0	441	159	low	.	.	duplicates(3)	CTAGGACCGGCCTAGGGGCATAGGAATTCCAGTTTCTACGACTGCTTTAGGGGAGGCTGAGGAGTGAGAGAGGAGAATGAGAGACCACAGCCTAGCGTCAGAGCCTTTCAGCATCCTGCAACTCAAAGAACACCACAGCCAAGGCGTGTACCTTGGGGTATCATGCTCTGAGCCCCAACATC...AAAG___...TTAAGTGTCTGCCACTGGGCTAGAAG___...AAAT...___...GTCAGATATCAATCAG___AAGTATGTTCCTGGTCCTAGCAGCAACAAAGACAACGAAGAAGCTGATGGGTTGGCCTCAGAAGGATCTAGAGCATCAG|AGATCTTCGCTTTAACAGAATCAGAGAGATCCAACCTGGGGCATTCAGGCGGCTGAGGAACTTGAACACATT___GCTTCTCAATAATAATCAGATCAAGAG	.	.	.
TALL044	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	6	0	31	9	low	.	.	duplicates(2)	AAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCC...CCCGTGGCCAGGCTCTGCTGGCCGCATCTGCCTGGCCCCATCTACCTTCCCTGGAAGCACAGGACTCACCCCAGGGGTCTCACAGGAACATGCCCAGTGCTTTCAAACCCAGTAAAATTTTACTTAGATTTTG	.	.	.
TALL044	ANKRD36	RP11-734K23.9	+/+	+/+	2:97245640	2:97284044	CDS	splice-site	deletion/read-through	downstream	upstream	0	3	3	76	204	low	.	.	duplicates(1),mismatches(1)	TGAAAACACAACGCTCCGTTCCAAACTGGAGAAGCAAAGAGAGAGCAGGCAAAGACTGGAAACAGAAATGCAATCATACCATTGTAGACTGAATGCTGCTCGATGTGATCATGATCAAAGTCACTCATCAAA...GGGCACAGTAGATAAATGTCGTCACTTACAGGAAAATTTGAATTCTCATGTTCTGATTCTTTCTCTGCAACTTTCTAAAGCTGAGA|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAGGCAGGCGTGTGTGGTAACACATAGGAACTGAGGGAGAGGACATTTCAAGATGGTGGGGATGCCATACAACAGGACTATGTGATGaTTTTTGGCTGTGTCCATAGGAAGTCACAACAGG	out-of-frame	GTVDKCRHLQENLNSHVLILSLQLSKAE|sdgis*	.
TALL044	C21orf33	AP001056.1(6534),AP001057.1(18303)	+/+	./+	21:44140342	21:44182987	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	2	440	12	low	.	.	duplicates(2),mismatches(2)	CAACCTCAGTGCAGCCAACCATGATGCTGCCATCTTTCCAGGAGGCTTTGGAGCGGCTAAAAACCT___...CAGGAATAGACCCTGGTTGTGAGGCTGTCTGAGGAGGCCTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG|CTCCTGTTCCATCCGCATCTATTTCATCTATTTCATCTGACTCCTCACCACCTCCTGTTCCATTCCTGTCTATTTCATCTGACGTCTCACCAGCTCCTGTTCCATTCCCGTCTATTTCATCTGATGTCTCACCAGCTCCTGTTCCATCCTTGTCTATTTCATCTGATTTCTCACCAGCTCCTGTTCCATC	out-of-frame	gidpgceav*ggllspgRSTFAVDGKDCKVNKEVERVLKEFHQAGKPIg|scsiriyfiyfi*	.
TALL044	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	108	321	low	.	.	.	CAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTT	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL044	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	0	1	5	6	low	.	.	duplicates(1),mismappers(1)	G___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAGTCCATCCTGGCTAACACgGTGAAAACCCgTCTCTACTAAAAATACAAAAGCAAAATTAGCcGG	.	.	.
TALL044	RNA5SP382(10399),KLHL33(3314)	TEP1	./-	-/-	14:20425497	14:20408463	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	9	65	low	.	.	duplicates(2),mismatches(1)	TTCATCTTTCTACAGGAACTGATTGGCGTGAAAACTGGCTCTTACCCTAAAAATTTCTCTTCTTCTGGCTTTAGAGATAGCACACTCTCCTGGATGGACCTTCTCTTATTTCTCCAATCCAAAATCCAGTAAGCCAGATCAAAGTGTCCAGGGGGGTGTGGCTTCATCCTTGGAGCTGATAGCCAAGGATCCACAG|GCATATACAAGCTGAGTTTCAGCCATGGAAAAACTCCATGGGCATGTGTCTGCCCATCCAGACATCCTCTCCTTGGAGAACCGGTGCCTGGCTATGCTCCCTGACTTACAGCCCTTGGAGAAACTACATCAGCATGTATCTAC...ATCCTCTCCTTGAAGAACCAGTGCCTAGCCACGCTTCCTGACCTGAAGACCATGGAAAAACCACATGGATATGTGTCTGCCCACCCAGACATCCTCTCCTTGGAGAACCAGTGCCTGGCCACACTTTC	.	.	.
TALL044	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	10	156	low	.	.	duplicates(1),low_entropy(1),mismappers(1)	CACGCACCAGCCGGAACCACAGGGTACTGCGCTGGACTCCTGGAGCCATGCCAGGGGCCAAGGTTAGGCCCATGGTCATGAGATGCTCCCAGAGACCACCTCAGGATGGGGGCTTCCTTCCTGACTTCAGCAC...CTCACCTCAAGAGGTGaCTCCCGAGCCTCCTGGGAGGGAAGGGGCCATGGCAGTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCAGCCTGCTCTTCCTGGTGGCCCATCTCGCCCTCCAGATCTGCCTGCATAcTGTGCCCCGC	.	.	.
TALL044	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	3	1	0	11	7	low	.	.	duplicates(1)	CAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCA...GAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAG	out-of-frame	RTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmas	.
TALL044	RP11-977G19.5(2946),RNF41(8945)	NABP2	./+	+/+	12:56193230	12:56223584	intergenic	splice-site	deletion/read-through	downstream	upstream	0	1	2	7	4	low	.	.	duplicates(2)	GGGAGTAGTCTATTGAAACATCATTGCAGATCCAGTTAGAGCCAAG___GTTCTCATATTTAAATATCTGGAGAGCCAAGACCAGAATTGACCAGCAGAGGGCAACCAACAACTATGTcGTGAAGGGAAGAAGGCTCCATGGTTTACAAAATGGAGGATCTGGACCAAGAAGGGAAATATGGCAGAG|GTTCCATTTCTTCCAAGAAGGGTGAGCCTGCCTTTTGTCTCTGGTGTAAATGCCACTTTTCCCAGAGACCTTGACCAAGCTGGGTAGTGCATTAAAGATGAGAACCCCAAATCAGGAACAAAGATAACG___TGGGGTGCCGAGGCTCAGGCAGCATGACGACGGAGACCTTTGTGAAGGATATCAAGCCTGGG...ACGACAGCAACCCTTCAGCTTCCCAGCCTACCACTGGACCCTCTGCTGCCTCTCCAG___CCTCTGAGAACCAGAATGGGAATGGACTGAGTGCCCCACCAGGTCCCGGTGGTGGCCCACATCCCCCTCATACTCC	.	.	.
TALL044	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	1	1	39	17	low	.	.	duplicates(3),low_entropy(1),mismappers(3)	GGGGAAGATCATCgTTTCCAGTGGTAGCTTGACCTGAGATGATACCTGACCACCACTTCTGGGAAGGCCCAGAATAGACAGAAGAGAGAGAACATACTAGAGTTGCTAGCCCCTAAGAGTTGAACGAAATGGG...GTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGC...ATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGC	out-of-frame	FLDQSQKVLYKEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL044	CD1B(791),CD1E(21374)	CD1E	./+	+/+	1:158332322	1:158354377	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	1	10	78	low	.	.	.	GGAAAAAATGACAATTGCTGCTAGCATGTGACCTTCTCTTCAGGAGCTCTTGGCCTATGGAGTTTTGAGTAACAAATATTCATGACATAAACAGAACTCTAGGAGCTATGCTATGTGCACCTCCAGCCTAAGTCAAAGATAACTTTTTGG|CTCCCCAGGCTCTACAATCCTATCATCTAGCAGCAGAGGAGCAGCTGTCCTTCCGCATGCTCCAAACTTCCTCCTTTGCCAACCACAGCTGGGCACACAGTGAGGGCTCAGGATGGCTGGGTGACCTGCAG	.	.	.
TALL044	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	0	1	26	3	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	GCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GAAAACAAACAACCTGATTTTAAAATGGC	out-of-frame	RSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL044	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	3	0	0	11	7	low	.	.	.	GGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAG	out-of-frame	ESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprv	.
TALL044	CTC-281F24.3	SLC13A5	+/+	-/+	17:6657783	17:6684558	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	0	1	2	38	15	low	.	.	duplicates(1)	CCGGAGCCGGGGACGAGGTCAGGTTCCCTTGTTACCGCTGGGTGGAGGgCaACGGCGTCCTGAGCCTGCCTGAAGGCACCA___GGGCGAGAAGAGGaGCTCACCAAAAGTCACTGGCCAAGCCCTCCTCTGGCCTTCTAGGCCGTACTGTGGGCGACGACCCTCGAGGCCTGTTCCAGAAACACCAGGAAGAGGAGCTGGAAGAGAGAAGGAAGTTGTACCG|GGTTGCTGCAAAGATCGAACGAGATAACTAGTGGcTTCAACAGGGACAGGAAGGCCTGG...CATTCATCCACCTCCCTGGGCTCCCCACACTGCAGAAAACCAGAGACAAGTCAGCAGCACAGTGGAGCTTTCCGCGGGAGACAGAGCATTTAATGAGAGCAAGAGCTGGACAGTGTGGcCAGG	.	.	.
TALL044	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	72	74	low	.	.	duplicates(1)	CAGGAATTGCTCAAGCACATAAGCACCTTGAAGTGTGTTACTAAGATACAAGAAACAGGTTTGCTTTTGCCTATTCCAGCATGGTGTACCTCTCTTAGGATACCTTTTAGCACAGGTAGCAGAATACCAGCC...CGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAG...GGGGCATTGGCCTAGCCCTGGGCCGTGGGTATCACTCAGTGTCTTGCAGTAGGTGTTGATACTTTTGAAGCCACATTGTTTCTTGGGTTCTTACACATCTTTATATCATGTTTTTATAACCATCACCCTTTC	.	.	.
TALL044	FAM155B	ARG2	+/+	+/-	X:69531768	14:67634008	3'UTR	intron	translocation/5'-5'	downstream	downstream	2	0	0	18	5	low	.	.	.	TAGTGAGTGAATGGGAGGGCGGGCCTGGAGCTGCGTGAGAGTGAAACCAAGAAGCGGATGGGGAAGGGAGAGCTGGCCTTGGTCAGCTTAGGGATGAATGGAGAAGGAATCATTCATGGGCCTCGGCTAGGTC...CCAGTTTTCTCATTTATTACAGCCTATCCCCCAACCCTACCCCTGTG|GTAGGATGTCAGGCAGAGAAAGTGGCAGCCCAGCCCAGTGCTAATTGCTATGAACCAGATGTACAAAGGGTGTGGCGGGAACAGAG	.	.	.
TALL044	CH507-9B2.3	ICOSLG(20954),CH507-9B2.8(11838)	-/-	./-	21:5121711	21:5061620	splice-site	intergenic	deletion/read-through	upstream	downstream	1	1	0	155	4	low	.	.	mismatches(2)	CGTGGCAAAATCACAGACCTGGCCAACCTCAGTGCAGCCAACCATGATGCTGCCATCTTTCCAGGAGGCTTTGGAGCGGCTAAAAcCCT___...TTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG|AGACAGTGTCTCACTGTGGACGTCCAGCCTCTGGAACTGTGAGAGGTACATGTCTGTTATGTAGGCTGCCCAGGCTGTGGAACTGTGTCATAGTGGCCTGAGTGACTTAAGCACCTGCCTGTAGGCCAGGACTGTGGCTCCACAGCCCAGC	out-of-frame	lspgRSTFAVDGKDCKVNKEVERVLKEFHQAGKPIg|dsvslwtsslwncerymsvm*	.
TALL044	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	82	83	low	.	.	duplicates(1),low_entropy(2)	GGGATTTTAAAATGTGGTGGACCAATCATTCTTTTAGTCTGTGCATTTTCCCATTTTTTTCAACAGGAATGTCTAGAGACATTATTCCTGTTTTGCCACTGTATTTTTGGTGAATGTGTAGTAAGTAACTGGC...AAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAGGTACG	.	.	.
TALL044	BCAR3	GCNT4	-/.	-/.	1:93750764	5:75027967	intron	3'UTR	translocation	upstream	downstream	2	0	0	4	102	low	.	.	.	.	.	.	.
TALL044	SNX4	RPS12(5661),HMGB1P13(44993)	-/-	./-	3:125453920	6:132823225	CDS	intergenic	translocation	upstream	downstream	2	0	0	144	5	low	.	.	.	AAAAGAGTATCTTTTTTATGCAGAAGCATTGCG___GGCTGTGTGCAGGAAACATGAACTTATGCAGTATGACTTGGAGATGGCTGCTCAGGACTTAGCATCCAAGAAGCAGCAGTGTGAGGAACTGGTAACTGGG...CTTTGAAGGGAATGACTACC|CCTGCTTCTTACCTTGTCTTCCTGTTTTTCACTGACCTGTCCCTCAGCTGGCATCAGTTTCTTACTGCCCTCTGCTGGCTAGGCATGAATTCATTCGTTTTAAGCAGTTTT	out-of-frame	LKGMTT|pasylvflfftdlslswhqfltalcwlgmnsfvlss	.
TALL044	RP11-347P5.1	RP11-347P5.1	+/+	+/+	2:196153972	2:196151530	exon	intron	duplication	downstream	upstream	0	2	0	28	32	low	.	.	.	CGAAAAGTTAAGAAGATAATATTGGCCAGGAGCGGTGGCT|CAAgGGTAAGTATTTTTTATGACCAACTTTAATTTGCTCAAAATGCAGCACTGAAAACTTAGTATGTCCAATTAGATAATACCTTCCTTCCAGAAGTTTTTTAAAAAGATTTTTAATATGTATAGCTATATTTTATTTAATTCTACAAATATGCTTTAAAG	.	.	.
TALL044	DIP2C	ZMYND11(6657),DIP2C(12896)	-/-	./-	10:275175	10:261294	3'UTR	intergenic	deletion/read-through	upstream	downstream	0	1	1	8	9	low	.	.	duplicates(2)	GGGCTTCAGGCCAGGCACTGACTATGAAACATTAGCTGCAGTGTGCAGGACAGCTTTGAGGTCCAG|GTGTTTGGTTCCTCTGTGTTCACTTCCTTTCTCAAGAACGGCTCTGCCTGTTCTTCTTCCTGCTCCTCCTTCCTCTTTGGTTCCACGTGAAAGGATCTGGAGGGGACATCTCATGCCTCAGACACCTTAATGAGCGCAGGAAAAG	.	.	.
TALL044	ATP5I	ZNF718	-/-	+/+	4:673303	4:160912	splice-site	splice-site	inversion	upstream	upstream	0	1	1	1037	70	low	.	.	duplicates(2)	CAAGATGGTGCCACCGGTGCAGGTCTCTCCGCTCATCAAG___ATTACCTAAAACCTCGGGCAGAAGAGGAGAGGAGGATAGCAGCAGAAGAGAAGAAGAAGCAGGATGAACTGAAACGGATTGCCAGAGAATTGGCAGAAG|CTGTGTGTTCTCATTTCACCCAAAACCTTTGGACAGTGCAGGGCATAGAAGATTCATTCCACAAACTTATACCAAAAGGACATGAGAAACGTGGACATGAGAATTTAAGAAAAACTTGTAAAAGTATAAATGAGTGTAAGGTGCAG...GCTTATTAACTACCCAGAAAAAAA[a]CAATTCAATCTAATATATGTGTCAAAGTTTTTCATAAATTTTCAAATTCAAACAAAGATAAGATAAGATATACTGGAGATAAAACCTTTAAATGTAAAGAATGTGGCA	out-of-frame	MVPPVQVSPLIKIT*NLGQKRRGG*QQKRRRSRMN*NGLPENWQK|lcvlispktfgqcra*	.
TALL044	USP10	KLHL36	+/+	+/+	16:84700111	16:84650852	splice-site	splice-site	duplication	downstream	upstream	0	2	0	127	38	low	.	.	duplicates(1)	GGGGAAGCAGCGTGAGCAGCCGGAGGATCGCGGAGTCCCAATGAAACGGGCAGCCATGGCCCTCCACAGCCCGCAG|GGCTGAAATCTCTTTAATGATGGAGGGAAGCAGGCAGACGCGAGTGTCTCGGCCATACAAGATCAGCGAATCATCAAAG___GTATACCGCTGGGCCGACCACTCAAGCACGGTGCTGCAGCGGCTGAACGAGCAGCGTCTCCGCGGGCTCTTCTGCGACGTCGTCCTGGTGGCCGATGAGCAGCGTGTGCCAGCCCATCGCAACCTGCTGGCCGTGTGCAGCGACTACTTCAACTCCATGTTCACCATCG	out-of-frame	MALHSPQ|g*	.
TALL044	ERCC3	FAM221A	-/-	+/+	2:127292612	7:23698190	splice-site	splice-site	translocation	upstream	upstream	1	0	0	132	52	low	.	.	duplicates(1)	GCCATATCTTCTTGGAAGCCTTCTCTCCAGTTTACAAATATGCCCAAGACTTCTTGGTGGCTATTGCAGAGCCAGTGTGCCGACCAACCCATGTGCATGAGTACAAACTAACTGCCTACTCCTTGTATGCAGC...CAGCGTTGGGCTGCAAACCAGTGACATCACCGAGTACCTCAGGAAGCTCAGCAAGACTGGAGTCCCTGATGGAATTATGCAGTTTATTA|AGGTGTACCTTCAGTTGAATTTTTAGAATCTCCCATTACGGCAG	out-of-frame	SVGLQTSDITEYLRKLSKTGVPDGIMQFI|kvylqlnf*	.
TALL044	CNOT2	AC025263.3	+/+	+/+	12:70278274	12:69825323	splice-site	splice-site	duplication	downstream	upstream	1	0	0	285	10	low	.	.	.	AGAAAATTCATGCG___AGGGAGACGTGGTGGGCGGTCCTTCCTGTGACACGACCCTTGAGTGACAGTTCTATTTGATTGCCTCCGGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGATGGACATACATTATCTGAGAAAAGAAACTACCAG|TTTTATAATCACATTTGAAAACTCAACCATCTTTCTGGGCACAATTTGATGGCTGAAGATATGCTTCACTCCAATAAAAAGAAAATGAAGATTTTTC	out-of-frame	MVRTDGHTLSEKRNYQ|fynhi*	.
TALL044	C10orf32	GBF1	+/+	+/+	10:102862932	10:102362475	splice-site	splice-site	duplication	downstream	upstream	0	1	0	107	64	low	.	.	.	GTTGAATCATCTGTTGAAATAGAATGACAT|AATGCCTTCCCTGTGTCTGGTCAACTCTATACAACACACCTACTATCTCTTGATGCCCTATTGACAGTGATTGACAGCACCGAGGCCCACTGCCAGGCTAA...ACCAAGCTGTGAGATAGTAGATGGCACCCGAGAAGCTAGCAATA___CTGACAAAAAGTTTGCCCGGAAGCCACCCCGATTTTCCTGTCTCCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAGAAG	out-of-frame	LNHLLK*ndi|mpslclvnsiqhtyyllmpy*	.
TALL044	ZNF337	CARHSP1	-/-	-/-	20:25696761	16:8859336	splice-site	splice-site	translocation	upstream	downstream	0	1	0	25	476	low	.	.	.	GCAGAGCGTTCCAGATCCCTGGGCGTCAGCGAGCCGTGAGATGCGTGGTCCACCATCGGTGACCTCACCGCCTCGGTTCGCCCTCAGCCGCCC|GGTCAGCCATGTCATCTGAGCCTCCC...GCGCTCACCATCCCCTCTGCGGGGCAACGTGGTCCCAAGCCCACTGCCCACTCGCCGGACGAGGACCTTCTCGGCGTGAGTCTGGAGCAGGCTGGGGACGCGTTCTCAGATGGATCTCTTGCCTGAGGCCAG	.	.	.
TALL044	ARHGAP15	GTDC1	+/+	-/-	2:143250600	2:143952073	splice-site	splice-site	inversion	downstream	downstream	0	1	0	466	23	low	.	.	.	CAGAAAGTGTGGATTTGTGTGGAGCACACATTGAATGGGCCAAGGAAAAATCGAGCAGAAAGAATGTCTTTCAG|CTGAATATCTGTATTCTACACCTGAACAGCTTTCAAAAAGGCTCCAGAATTTCTGCA...CCGTTTTCTTGGGCAGCCCTACATGGTAAATTCAGGTCTCTGCTTACAACAGAACCTAGGGAAGATTTGTGACAGATGGGGCTAAGTCACAAACTTGCAGCCTAAGGCAGAATCTGAAGAACTTTCCAGAGTG	out-of-frame	ESVDLCGAHIEWAKEKSSRKNVFQ|lnicilhlnsfqkgsris	.
TALL044	HNRNPH3	NAF1	+/+	-/-	10:68337333	4:163129348	splice-site	splice-site	translocation	downstream	downstream	0	1	0	1166	42	low	.	.	duplicates(1)	GTACGACTTCGTGGACTACCATTTGGTTGCAGCAAAGAGGAAATAGTTCAGTTCTTTCAAG|GTGAAGATTTTACTGAAGTACATCAGAATTGGAATGCTCATAGCTCTGCTTCAGAGCATGCAAAAGGATATC...AGAGAATTCACACGAGGATTTTCCAGGGCCAGATACCCTCGATCTTGCCATGGCAGGCCTCCACCTCAGCATTTCTATAACTCAGAACATATGGTATCTCAGGAGACTTCAGGATTTCCTTCTCAGAGACAAA	in-frame	VRLRGLPFGCSKEEIVQFFQ|gEDFTEVHQNWNAHSSASEHAKGY	.
TALL044	CDK6	AC002454.1	-/-	+/+	7:92671426	7:92854909	splice-site	splice-site	inversion	upstream	upstream	1	0	0	296	1768	low	.	.	.	CCCGCATCTATAGTTTCCAGATGGCTCTAACCTCAGTG___GTCGTCACGCTGTGGTACAGAGCACCCGAAGTCTTGCTCCAGTCCAGCTACGCCACCCCCGTGGATCTCTGGAGTGTTGGCTGCATATTTGCAGAAATGTTTCGTAGAAA|TCCACCCCTGGCTGGTTTCTGCTTCCACCTGCTGATCTCACAGAGGTGAGGTGATAACAGTGATGAAACAAAATCTTCAAACCACAGCACA___CACTGCAAGCTATTTGGCA	out-of-frame	RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRn|pplagfcfhllisqr*	.
TALL044	CDK6	AC002454.1	-/-	+/+	7:92833091	7:92854909	splice-site	splice-site	inversion	upstream	upstream	0	1	0	600	1768	low	.	.	.	GGGCATGCCGCTCTCCACCATCCGCGAGGTGGCGGTGCTGAGGCACCTGGAGACCTTCGAGCACCCCAACGTGGTCAG|TCCACCCCTGGCTGGTTTCTGCTTCCACCTGCTGATCTCACAGAGGTGAGGTGAT...CAGAAACTCTCTTACAGAATATTTCCACAGCTGGCTTTCATCACTTCTTGATAGGTACCTAAATATTTCAGTTTTTTCCACTTTATTTTCCTTTAACAATAACTGCTGCCCAATTAAATAATTCATCTTTTCC	out-of-frame	GMPLSTIREVAVLRHLETFEHPNVVs|pplagfcfhllisqr*	.
TALL045	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	8	97	1	303	161	high	.	.	duplicates(7),low_entropy(3),mismappers(1),mismatches(6)	ACTGTGCAAACCCTGACTGTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCA...TCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCACCTTCCTGAGCCACCCG	.	.	.
TALL045	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	88	161	low	.	.	.	CTCTGATCTCCTGGTTGGAAGCAAGGGAGCCATGGGGCCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCG	out-of-frame	LISWLEAREPWGLNMQAAQPKGNPVAAPT|gmsrgqfgqgqepldmffwvneis	.
TALL045	PTEN	MED6P1(19732),RP11-129G17.2(189574)	+/+	./+	10:87925557	10:88069555	splice-site	intergenic	deletion/read-through	downstream	upstream	53	26	11	756	149	high	.	.	duplicates(10),low_entropy(6),mismappers(8),mismatches(8)	T___...CCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCT___ATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAG___GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT|TTCTGGAGGCCAGAAGCCTGACATCAGTTTCACAGAGTCAAAATCAAGGTGTTGGCAGGATACTCTACAGTCCCTCTGGAGACTTTAG___GTTGGAAATATTTTTGCAATACCACTGAATCCTCCAGTTTTTACCCCTTACGATGGGAAGTGAATACAGTATGAAAAGGGAGTGGGACATgTGAG...___...GTGAAGTACACATCGTTTTACTCCGG...___...AGA...___...TTTGAGAACTTTCAGCTCTGTAGTGTC...___GCTGGAGTGCAGTGGCGTGATCGTGGCTCACTGCAACCTTTACCTCCCGGGTTCAAGCAACTCTCCTGCCTCAGCCTCCCAACTCTAGGACTACAG___C	out-of-frame	MTAIIKEIVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNl|sggqkpdisftesksrcwqdtlqslwrl*	.
TALL045	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	9	9	1	51	88	high	.	.	duplicates(2),low_entropy(2),mismappers(1),mismatches(7)	TCTTTTATTTACGAGAAGAAATCTCCCCCTCGGTACTTCTTGGCTGTTTGG___...GGGGGGG?AA???????T?TTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAG	.	.	.
TALL045	PTEN	RNLS	+/+	-/+	10:87925557	10:88370079	splice-site	intron	deletion/5'-5'	downstream	upstream	11	6	0	756	152	high	.	.	low_entropy(1),mismatches(3)	CAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCT___ATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAG___GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT|CTTCTTCTAGGAAAGCACTCTGAAGCCAAGTTGAAACATTATACTCTCAGGCAGTAGTAGAGATCAACCTCTTAAAACCAAATCCATGGGCCCAGGAGTATG___GAAAAGAGTTCAATAAAATGGCCTTAACTGGTATAAGAAGTTACAATTGTTAAAA...AGCAAAAGAGAAAGAAAATGAAAAAGTTGTCCTGGCTCATCTCTGGAAAGACATGATATTTCATAACCTCAAGGTGTTTGCTTCTGACCTATAACTTCAATTATAGACCAGGTTATCCAAAAG	out-of-frame	AIIKEIVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNl|ff*	.
TALL045	RNF216	UNC93B2	-/-	-/+	7:5641154	7:6858058	splice-site	intron	inversion/5'-5'	upstream	upstream	0	2	2	176	24	high	.	.	.	CTCATCAAATCTGAAGGCTGCAACCGCATGTCTTGCCGCTGTGGTGCCCAGATGTGCTACCTCTGTCGAGTTTCTATTAATGGATATGACCATTTCTGCCAACATCCCCGCTCACCAGGAGCCCCTTGCCAGGAGTGTTCAAGATGCTCTCTCTGGACCGATCCCACT|GTGTGCAGTGCCAAGCTTGCAGGCGCTGTTTCTCCTCCTCAGCCGGGACTAGAGAGATCCAACTGTTTGCAGCTGCCAACTCTGCAAATCAAACCTGAAGCTAAGCATGGAGAGGGGGGCTTCCTTTCCG___TGCCCACAGCTATACTCAC...___GTGTAACGAATTAACCTGGcGACATACTGGAGTAAGGTGGGCCCTTCACACCATGTGACTGGTATCCTTAAAAGAAGAAGAGACTCAGAGGGAAGA	out-of-frame	LIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAPCQECSRCSLWTDPT|vcsaklagavsppqpglersnclqlptlqikpeakhgeggflsvptail	.
TALL045	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	8	13	3	53	32	medium	.	.	.	GTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG___GCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAG	.	.	.
TALL045	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	11	6	0	2163	369	medium	.	.	.	GCCAAATTTGGTTGGTGGTGTTGTCACAGTGAGGCTCTTTGGGCTGTGCGGCACCTCATGACCATATTGGCTACACCCATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTTGACCCTGTGAGACCCTAAGGACCCA	out-of-frame	akfgwwcchsealwavrhlmtilatpivfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssiclhfdpvrp*	.
TALL045	FRDAP(110396),RNA5SP388(7129)	NRXN3	./.	+/.	14:78170674	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	5	6	0	15	16	medium	.	.	low_entropy(1),mismappers(1)	.	.	.	.
TALL045	LMO2(580),CAPRIN1(158814)	TRAC	./-	+/+	11:33892869	14:22547506	intergenic	splice-site	translocation	upstream	upstream	3	4	0	184	9813	medium	.	.	duplicates(1)	CCGGTGAGCTGTCACCTCGGAATTGGGCCTTGCCCAGCAGACAGACATGCATGCGGGGGAGGTAGCTGACAGACAGGGGCGCATGGGGAAGCAGCCATTCCAGAGAACTGCAACAGCAGATTGCAAACCAGGACTTCAGGACTCAGAGGGGGACAAGGAAAGGAGAGCCTATAGTGGCCCCAAAGtCCAGGGTCAGAGGCAGGGCCAGGAGAGCAGCTGAtAAGAGCTTTATG|ATATCCAGAACCCTGACCCTGCCGTGTACCAGCTGAGAGACTCTAAATCCAGTGACAAGTCTGTCTGCCTATTCACCGATTTTGATTCTCAAACAAATGTGTCACAAAGTAAGGATTCTGATGTGTATATCACAGACAAAACTGTGCTAGACATGAGGTCTATGGACTTCAAGAGCAACAGTGCTGTGG	.	.	.
TALL045	TRAV13-1	BCL11B	+/+	-/-	14:21869361	14:99242374	CDS	intron	inversion	downstream	downstream	1	3	1	122	27	medium	.	.	duplicates(1)	CAGAGACCCAACCTGAAGACTCGGCTGTCTACTTCTGTGCAGCA|ACTCGTAACCCTCCCAACCTGACGGGCCTCTCCGCCTGTCGCTGTACCCAGCCCACATGGTTTGCGAGAAAAGGTAGGGAAGCAGGGGGACAAGATCATGCAACGCCCATGTAAATATTGTCTGTATGAACTGGGTCTTCCATCTTTTGTTAGTGGCAGCTCGT	out-of-frame	ETQPEDSAVYFCAA|trnppnltglsacrctqptwfarkgreaggqdhatpm*	.
TALL045	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	12	128	medium	.	.	duplicates(1),low_entropy(2),mismappers(1)	GCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGA	.	.	.
TALL045	EIF1B-AS1	SRBD1	-/-	-/-	3:40301237	2:45477075	splice-site	splice-site	translocation	upstream	downstream	0	2	0	17	59	medium	.	.	.	TGAGCCTACAACTGCGCTATCTTCCCTGGATTTTTCTTCACCTTTTCgTTACTCATGAGCCAG|TTTCCATAGCAAGGCGTGTACAAGATCCATTAGCTGAGCTAGTGAAAATTGAGCCAAAGCACATTGGAGTTGGAATGTATCAG___CATGACGTATCCCAGACTTTACTCAAGGCAACACTGGACAGTGTTGTAGAAGAATGTGTCAG	.	.	.
TALL045	DTX2P1-UPK3BP1-PMS2P11	ABCB10	+/+	-/-	7:77015855	1:229518875	splice-site	splice-site	translocation	downstream	downstream	0	2	0	116	93	medium	.	.	.	ATAAGGAATTTCAAAGGAATATTAAGAAG|AATCCCAAAATTCTTCTCCTAGATGAAGCAACCAG___TGCGCTGGATGCCGAAAATGAGTACCTTGTTCAAGAAGCTCTAGATCGACTGATGGATGGAAGAACGGTGTTAGTTATTGCCCATCGTCTGTCCACCATTAAGAATGCTAATATGGTTGCTGTTCTTGACCAAGGAAAAATTACTGAATATGGAA	.	.	.
TALL045	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	3	6	0	151	15	low	.	.	low_entropy(8),mismatches(1)	GGCCACGCTGCCTGCATCTCGTGCTGGGGACCTGCATGCGCCAGCACCAGGGCTTGGACTGGATCTTACTCAGTCCATGGTGCCCAGCCTCTGCCCCAACATGCCCTCTGCATGTGACCGTCATGCCCTGGATGGAGCCACTCCTGGCTCACCCCACCTGCACTGCACTGTCCCCAGAGAGCCACCCCTCCACCCACTCAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATC	.	.	.
TALL045	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	7	2	0	19	18	low	.	.	duplicates(1),mismappers(1),mismatches(2)	GGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGA...AGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCgGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAGT	.	.	.
TALL045	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	5	3	0	60	31	low	.	.	mismappers(6)	GCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAG	out-of-frame	PDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL045	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	6	1	49	25	low	.	.	duplicates(1),low_entropy(2),mismatches(1)	TCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTC	.	.	.
TALL045	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	7	0	0	364	55	low	.	.	duplicates(1),low_entropy(1),mismatches(8)	AAACA___...CTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAAT	.	.	.
TALL045	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606353	intergenic	intron	deletion/read-through	downstream	upstream	0	6	0	45	45	low	.	.	duplicates(2),mismatches(1)	.	.	.	.
TALL045	IL10RB	IL10RB(10951),AP000295.10(1306)	+/+	./+	21:33288261	21:33308185	splice-site	intergenic	deletion/read-through	downstream	upstream	4	1	0	304	6	low	.	.	.	TGAGCCTGTCTGTGAGCAAACAACCCATGACG___AAACGGTCCCCTCCTGGATGGTGGCCGTCATCCTCATGGCCTCGGTCTTCATGGTCTGCCTGGCACTCCTCGGCTGCTTCGCCTTGCTGTGGTGCGTTTACAAGAAGACAAAGTACGCCTTCTCCCCTAGGAATTCTCTTCCACAGCACCTGAAAGAG|CTCTCTGGCATCAATTTTTCCACTTCTCAGAAACACTTTGGCCCACAAATTCCCAAAGGAACCTTGTTCTTCATTCTGGAAAACACGATGCCAACATATCAGAATAAAGGACAGATAGGAGCTTTTGCTTCAAAGTGAATCACTTCATGGATGTTAAAGTGTCCTGAAAGATTCTAAACTTCACAACTTTT	out-of-frame	EPVCEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE|lsginfstsqkhfgpqipkgtlffilentmptyqnkgqigafask*	.
TALL045	KCNJ12	PDLIM1P2(4881),RP11-728E14.3(6193)	+/+	./+	17:21419513	17:21450320	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	4	0	9	6	low	.	.	.	CCTGATTATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|GGTGTATGAAGAAAGGGCTTCAGCAGAAACAGAGGCTGAAGCCTGCGTGCTGGGGGCCGAGAGGCCAGAGGAGAATGTGATGAGACATAGAATTGGTAGTGCAGGAAGTTGGAAGATCAAGTACCGTGATGTTGGTGCTGGCTGCTTGTGTTAAACTGCCTAGGTTTTAATCTACGGTAATTTTCGCCCACCTGTGGGGCTCCCCTGGTGCCC	.	.	.
TALL045	PTGER4(3028),TTC33(17712)	TTC33	./.	-/.	5:40696763	5:40740484	intergenic	intron	deletion/read-through	downstream	upstream	0	4	0	16	16	low	.	.	.	.	.	.	.
TALL045	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	1	0	26	4	low	.	.	.	GATGGAGTTCTTATGGATCTTGGGTGTTCCTCCATGCAACTTGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___G	out-of-frame	DGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL045	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	132	278	low	.	.	mismatches(1)	GCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL045	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	37	278	low	.	.	duplicates(1),read_through(14)	CGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAG	out-of-frame	RELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL045	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	4	0	0	511	211	low	.	.	mismatches(1)	AGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCC	out-of-frame	LDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|gprelllcarpgpga*	.
TALL045	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	447	211	low	.	.	.	CCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCG	out-of-frame	MGLGRCIWE|gprelllcarpgpga*	.
TALL045	IL9R	WASH6P	+/+	+/+	X:156004565	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	665	211	low	.	.	read_through(1)	GGAGTACCTGCCCCGGAGACACG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTCCCAGAGAACTACTTCTATGTGCC	out-of-frame	EYLPRRHVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|vpenyfyv	.
TALL045	IL9R	WASH6P	+/+	+/+	X:156006188	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	511	145	low	.	.	.	CTCCTGTTCAAGCTGTCGCCCAG|GTGTTCTCCAGTGCCAcGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCC...CAGAAGAGGGACTTGGGGGTCTTCCCAGCAACATCAGCTCTGTCAGCTCCTTGCTGCTTTTCAACACCACCGAGAACCT___GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCT	out-of-frame	LLFKLSPr|cspvprtllqstcrnmapssraprtlacrdap	.
TALL045	IL9R	WASH6P	+/+	+/+	X:156007607	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	356	211	low	.	.	read_through(1)	GCCAGCCTGTGTGCTTCCAGGCTCCCCAGAGACAAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG___GGTGAAGAGAATCTTCTACCAGAACGTGCCCTCTCCAGCGATGTTCTTCCAGCCCCTCTACAGTGTACACAATGGGAACTTCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGAC...GGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCC	out-of-frame	QPVCFQAPQRQGPLIPPWGWPGNTLVAVSIFLLLTGPTYLLFKLSPRVKRIFYQNVPSPAMFFQPLYSVHNGNFQ|vpenyfyvpdlgqvpeidvpsylpdlpgian	.
TALL045	CD226(20087),RTTN(21903)	CD226	./-	-/-	18:69981890	18:69947433	intergenic	splice-site	deletion/read-through	upstream	downstream	2	0	1	3	10	low	.	.	.	GTTAAAGGTCTGTCTCCTACCTACTTAGAGCTAAGGGCATAGATCAAGTCAATGCAAGTATTCAATTAAAAAGAAAATGACTGCAGATCTGTTTCTATTTAATACTTAGAGAATTGTAGGTTCTAGGTACTCTGAAACAGCCACTAATTTCATTCCCTTGGCTTACCTATTCCCTTGGATATAG|AACCAGCCTTTCAAACAGTTTCCAGAGATGGATTATCCTACTTTACTTTTG	.	.	.
TALL045	TMEM182	TMEM182(15973),AC007251.2(13473)	+/+	./+	2:102798000	2:102859866	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	21	4	low	.	.	duplicates(1),mismatches(1)	TA___TTTACCGTGGTTTCTGGGCAGTCCTGATGCTCCTGGGGGTAGTTGCTGTAGTCATCGCAAGCTTTTTGATCATCTGTGCAGCCCCCTTCGCCAGCCATTTTCTCTACAAAGCTGGGGGAGGCTCATATATTGCTGCAG|TTTCTGTGGGTCAAGAGTGTGGAAGTGGCTAAGCAGAATGAGTCCAGCTCAGAATCCCATGAGTCTGCTAATCAAGCTATTTTCTGGGGTTGCAATCATCTGAAGGCCCAGCTGGGGCTAAAGAACGCACTTTGCAGCTCGCTTTTTGCCTGGC	out-of-frame	IYRGFWAVLMLLGVVAVVIASFLIICAAPFASHFLYKAGGGSYIAA|vsvgqecgsg*	.
TALL045	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	6	3	low	.	.	.	CCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCG	out-of-frame	GYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggp	.
TALL045	HEPACAM	ROBO4	-/-	-/-	11:124922388	11:124898476	splice-site	exon	deletion/read-through	upstream	downstream	0	3	0	38	3	low	.	.	.	AG___ACACCCTCCCTCGAAGTGGTGAGCAGGAACGGAAGAACCCCATGGCACTCTATATCCTGAAGGACAAG|AGAAGGAAACTGACTTGCCCAAGTTCTCCACAGAAGCTTATTTCATCCATCTCTGAGCTGAATATGGACACACCCTGTG___GAGGCATGGCTCAGGACTCCCCGCCCCA...CCAGCCACCTCCCACCATCCGCTGGTTGCTGAATGGGCAGCCCCTGAGCATGGTGCCCCCAGACCCACACCACCTCCTGCCTGATGGGACCCTTCTGCTGCTACAGCCCCCTGCCCGGGGACA	in-frame	DTLPRSGEQERKNPMALYILKDK|rrkltcpsspqklissiselnmdtpcGGMAQDSPP	.
TALL045	CTC-281F24.3	SLC13A5	+/+	-/+	17:6657783	17:6689876	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	2	1	0	51	7	low	.	.	mismatches(1)	GGCGTCCTGAGCCTGCCTGAAGGCACCA___...CTTCTAGGCCGTACTGTGGGCGACGACCCTCGAGGCCTGTTCCAGAAACACCAGGAAGAGGAGCTGGAAGAGAGAAGGAAGTTGTACCG|TCTACAGAGGCTTTTCATAGCCCTCATCTTACTTGGCCATCAGCACAGCTCTCGGAAGAAAGAACTGAAGGGCCATGTTCAGA	.	.	.
TALL045	AC104073.2	RP11-460N20.5(3207),AC104073.2(37089)	-/-	./-	7:65140628	7:65103439	CDS	intergenic	deletion/read-through	upstream	downstream	2	1	0	9	19	low	.	.	.	GCAAAAGCCGCGGTGTGGGGGCAGAAAGCCGCAGCGGGAGAAAGTCTCACTCCAAATTCCCTTGCTTCAGTAAGCTTCTCTAGGCCAATGTTCCTTCGGCATTACCCATTTTCTTC|ATGGACACATGTTCAGGGCTTGTGTGGAGGAGTTGTGGGTGAGGACaAAAGTCGACTTGGAGACAA	out-of-frame	AKAAVWGQKAAAGESLTPNSLASVSFSRPMFLRHYPFSs|wthvqglcggvvgedksrlgd	.
TALL045	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	84	105	low	.	.	mismatches(3)	TCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAG	.	.	.
TALL045	AC133528.2	ING5	+/+	+/+	2:241690653	2:241709216	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	84	116	low	.	.	.	CTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGA	.	.	.
TALL045	KLRB1	RP11-705C15.2	-/.	+/.	12:9607802	12:9633425	CDS	exon	deletion/read-through/3'-3'	downstream	upstream	1	2	0	143	38	low	.	.	mismatches(1)	.	.	.	.
TALL045	MAD1L1	INTS1	-/-	-/-	7:1966862	7:1498542	intron	CDS	deletion	upstream	downstream	0	0	2	1	334	low	.	.	mismappers(1),mismatches(1)	TCGTGTTCC...|...GCGCGCACAAGGACAACCTGGGCACCACCATCAAGTTGGTGATCTTCAATGAGCTCTCCAGCGCCCGGAACCCGAACAACATGCAGGTCCTCTATACCGCACTGCAGCACAGCTCAGAGCTGGCGCCCAAG___TTCCTGGCCATGGTGTTCCAGGACCTGC	.	.	.
TALL045	MKRN2	EPHA5	+/+	-/-	3:12582591	4:65667675	3'UTR	intron	translocation	downstream	downstream	2	0	0	219	11	low	.	.	duplicates(1)	TATAGTTACACCcCAAGCCCCTCAGGGGTAACAACTAACAAACACCCAAACTGTTTGGATTGATTGCTTTAAAAAACAAACCTGGCTCTTACCTTTGATCTTTTCTTCCCCA|GGAGGAAGAGGCAGAAGGAAAGAGAAGGAAGGAGAAATAGCGCCG	.	.	.
TALL045	ERVK3-1	GCNT4(11483),LINC01336(5337)	+/+	./+	19:58314996	5:75042382	exon	intergenic	translocation	downstream	upstream	2	0	0	757	16	low	.	.	.	TGAAATTACCTTTATTCAATTAATGCAAAAACAAAAGGGGAGATGTTGGAGGCCGAAGGAATGAGGGTCGTGACCAACTCAGTATACCACTGGAGGCTCTGTGAGCAAACAGCAAACTGTTCTC...TGGCGAACTGACAAACTCTGTCTGCCGCCAGAAGGAATGCTGGGGGCAGTCATGTCCCAGG|TgCCCCTCAGAAATTTTTGGAAGCATTTATTTTGGTATTATATGGCTAACTCCATATTTTTCA	.	.	.
TALL045	TP53I3	ANKRA2	-/.	-/.	2:24083088	5:73557677	CDS	intron	translocation	downstream	upstream	0	0	2	178	6	low	.	.	.	.	.	.	.
TALL045	WARS	RXFP1	-/-	+/+	14:100360660	4:158324791	CDS	intron	translocation	upstream	upstream	0	0	2	0	4	low	.	.	duplicates(1)	AGGGAACCCAGCACCTACCAGTAATCATGGCCCAGATGCCACAGAAGCTGAAGAGGATTTTGTGGACCCATGGACAGTACAGACAAGCAGTGCAAAAGGCATAGACTACGATAAGCTCATTG___TTC...|...ATAGAGAGCTCAATCAAGTCTTTTTTTTCCTGGTTTTTTATTTTTTATTATGTTTTAATATGTGCCTTTGTACCAACAGCAAAAGTAAGAAGCAGCCAGTAAGAAGGGTTTTTTGTTTTTT	.	.	.
TALL045	AC010642.1	GCNT4(11483),LINC01336(5337)	+/+	./+	19:58314996	5:75042382	3'UTR	intergenic	translocation	downstream	upstream	2	0	0	757	16	low	.	.	.	TGAAATTACCTTTATTCAATTAATGCAAAAACAAAAGGGGAGATGTTGGAGGCCGAAGGAATGAGGGTCGTGACCAACTCAGTATACCACTGGAGGCTCTGTGAGCAAACAGCAAACTGTTCTC...TGGCGAACTGACAAACTCTGTCTGCCGCCAGAAGGAATGCTGGGGGCAGTCATGTCCCAGG|TgCCCCTCAGAAATTTTTGGAAGCATTTATTTTGGTATTATATGGCTAACTCCATATTTTTCA	.	.	.
TALL045	BRIP1	BRIP1	-/-	-/-	17:61793597	17:61801474	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	1	1	0	37	25	low	.	.	.	GCCTCATTAA___TTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAG|GGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTG...AGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGT___ATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTG	in-frame	LINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQ|GKSCYFYHGVHKISDQHTLQTFQGMCKA	.
TALL045	IPO7	MRPL1	+/+	+/+	11:9384847	4:77883242	splice-site	splice-site	translocation	downstream	upstream	2	0	0	80	204	low	.	.	.	CCCGAGCCCCGGGTTTGACCGAGTCCGCGCTGCGATGGACCCCAACACCATTATCGAGGCCCTGCGGGGCACcATGGACCCAGCCCTGCGTGAGGCCGCGGAGCGCCAGCTCAATGAA|GTCTGCAAAGAAAACAAAAAAAGGTGCTAAAGAAAAAACACCAGATGAGAAAAAAGATGAAATAGAAA	out-of-frame	MDPNTIIEALRGTMDPALREAAERQLNE|vckenkkrc*	.
TALL045	MACF1	FAM214A	+/+	-/-	1:39460794	15:52601165	splice-site	splice-site	translocation	downstream	downstream	2	0	0	575	106	low	.	.	.	CTTGGATCGGCTGGAGGAG___TTGAAAGAATTTGCCAACTTTGACTTTGATGTCTGGAGGAAAAAGTATATGCGTTGGATGAATCACAAAAAGTCTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAGGATGGGAAGATAACACGTCAGGAGTTTATCGATGGCATTTTAGtATCCA|GTTCCTCAAAGAAAAACACAATCAGGTTGCTTTGATCTGGAT	out-of-frame	LDRLEELKEFANFDFDVWRKKYMRWMNHKKSRVMDFFRRIDKDQDGKITRQEFIDGILvS|ssskkntirll*	.
TALL045	RFC4	NOP56	-/-	+/+	3:186791725	20:2657929	splice-site	splice-site	translocation	upstream	upstream	2	0	0	397	1157	low	.	.	.	ATTCAACAGCAGCGATTACTAGACATTGCCAAGAAGGAAAATGTCAAAATTAGTGATGAG___GGAATAGCTTATCTTGTTAAAGTGTCAGAAGGAGACTTAAGAAAAGCCATTACATTTCTTCAAAGCGCTACTCGATTAACAGGTGGAAAGGAGATCACAGAGAAAGTGATTACAGACATTGCtGGG|GAGATGAGTGAAAAACCCAAAAAGAAGAAAAAGCAAAAGCCCCAG	in-frame	IQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAG|EMSEKPKKKKKQKP	.
TALL045	TLN1	TIA1	-/-	-/-	9:35716390	2:70216994	splice-site	splice-site	translocation	upstream	downstream	0	2	0	339	852	low	.	.	.	TCTTAAGTGCTGCCAAGATCCTAGCTGATGCCACAGCCAAGATGGTAGAGGCTGCCAAG|GATGCTGAAAACGCCATTCAACAGATGGGTGGCCAGTGGCTTGGTGGAAGACAAATCAGAACTAACTGGGCAACCCGAAAGCCTCCCGCTCCAAAGAGTACATATGAGTGTAGGTGTATTGGAGAAGAAAAGGAAATGTGGAATTTTGGAGAAAAATACGCTA	in-frame	LSAAKILADATAKMVEAAK|DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYECRCIGEEKEMWNFGEKYA	.
TALL045	SLC12A7	CLPTM1L	-/-	-/-	5:1086903	5:1318453	splice-site	splice-site	duplication	upstream	downstream	2	0	0	132	670	low	.	.	.	GGAGAGCCGGCGGCGGGAGGCCAAG___CTGGCGGGTCCTACTACATGATATCGCGCTCGCTGGGACCCGAGTTTGGAGGCGCTGTCGGCCTCTGCTTCTACCTGGGCACGACGTTTGCAGGGGCCATGTATATTTTGGGGACCATCGAGATTTTTCTG|GCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGGCCACGCGGGCGCCC	in-frame	ESRRREAKLAGPTT*YRARWDPSLEALSASASTWARRLQGPCIFWGPSRFFw|LYPVDKRRVNEFGESYEEKATRA	.
TALL045	SLC4A7	LIMD2	-/-	-/-	3:27484079	17:63699395	splice-site	splice-site	translocation	upstream	downstream	0	2	0	28	418	low	.	.	.	GCAGTACCGTAGCGGCCGTCACGGGCTGGCCGGCCGGCCATGGAGGCTGATGGGGCCGGCGAGCAGATGAGACCGCTACTCACCCGG|GCTGGGGCCGGGCTGGCGGGGCCCTCCCGACTGACTTCCCCTTGCAGAACCCAGCGGGTGCCGCTTCTCCACCCGAGGCTTCCACCTCCAACGAGCCATGTTCCAGGCTGCAGGAGCCGCCCAGGCCACCCCCTCTCAT___GACGC	out-of-frame	MRPLLTR|agaglagpsrltspcrtqrvpllhprlppptshvpgcrsrpghpls*	.
TALL045	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89133136	splice-site	splice-site	inversion	upstream	upstream	1	0	0	210	1895	low	.	.	duplicates(1)	GCAGCCGCCCCTGAGTCGTGGAGGCGGGGACCAAGCTGGAAGGAGCAGCGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GTGACCCCAGGGTTTGAAGAAAAGGAGGGGGAGCTGCTGGTGAGGGGACCCTaCGTG	.	.	.
TALL046	PTEN	MED6P1(8171),RP11-129G17.2(201135)	+/+	./+	10:87925557	10:88057994	splice-site	intergenic	deletion/read-through	downstream	upstream	126	49	16	589	475	high	.	.	duplicates(41),low_entropy(2),mismappers(3),mismatches(14)	CGCCGGAGAGTTGGTCTCTCCCCTTCTACTGCCTCCAACACGGCGGCGGCGGCGGC-GGCACATCCAGGGACCCGGGCCGGTTTTAAACCTCCCGTcCGCCGCCGCCGCACCCCCCGTGGCCCGGGCTCCGG...CGCCGCTGCCAGGCCTCTGGCTGCTGAGGAGAAGCAGGCCCAGTCGCTGCAACCATCCAGCAGCCGCCGCAGCAGCCATTACCCGGCTGCGGTCCAGAGCCAAGCGGCGGCAGAGCGAGGGGCATCAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGAAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCT___ATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAG___GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT|ATGCCgTTTGGAGTAGCTACTTTGAGGACAAGAGACAAAAAGCCTGAGGAGAAAGTCACCATGAAGGAAACAGAAAGAcTAAACAGCATGCGTGATCTTTGATTCAGAGTCCCCATCTCACCCTGGACTGCCTTCCTTTGGAATTCCCTTGTGGAAAAAAAAATTAAACTCTTATTTGGTTAAATcATT___GTGACATCTGAGCTGAGACTTGAATGAAGAAAAGCTGTCCATGTAAAGATCTGGGAGCAGAAGGATCCAGGCAGAGGAAATGGAAAGTACAAGGGGCTGGATGAGAGAACAAGCTTGGCTTGTTCG...___GTTGGAAATATTTTTGCAATACCACTGAATCCTCCAGTTTTTACCCCTTACGATGGGA	out-of-frame	MTAIIKEIVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNl|crle*	.
TALL046	PTEN	SNORD74(21548),MED6P1(31892)	+/+	./+	10:87925557	10:88016243	splice-site	intergenic	deletion/read-through	downstream	upstream	90	72	29	589	389	high	.	.	duplicates(38),low_entropy(20),mismappers(5),mismatches(2)	GGAAGCCGTGGGCTCGGGCGGGAGCCGGCTGAGGCGCGGCGGCGGCGGCGGCACCTCCCGCTCCTGGAGCGGaGGGGAGAAGCGGCGGCGGCGGCGGCCGCGGCGGCTGC...GCTGGGAACGCCGGAGAGTTGGTCTCTCCCCTTCTACTGCCTCCAACACGGCGGCGGCGGCGGC-GGCACATCCAGGGACCCGGGCCGGTTTTAAACCTCCCGTcCGCCGCCGCCGCACCCCCCGTGGCCCGGGCTCCGGAGGCCGCCGGCGGAGGCAGCCGTTCGGAGGATTATTCGTCTTCTCCCCATTCCGCTGCCGCCGCTGCCAGGCCTCTGGCTGCTGAGGAGAAGCAGGCCCAGTCGCTGCAACCATCCAGCAGCCGCCGCAGCAGCCATTACCCGGCTGCGGTCCAGAGCCAAGCGGCGGCAGAGCGAGGGGCATCAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGAAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCT___ATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAG___GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT|TGGGCAGATGTATGCAAACCTATCCTAAAGTTCAAGGAAGCTGAGAGGCCGAAGAAAGAGGCTGACAAATCTAGTTTCTCAGAAAGAAACCTTTAACAGGGATTTAGGAACAGAAGCCATGTCTGGGTCTCAGACAGGGCAGGATGAGATG___ATGCCgTTTGGAGTAGCTACTTTGAGGACAAGAGACAAAAAGCCTGAGGAGAAAGTCACCATGAAGGAAACAGAAAGAcTAAACAGCATGCGTGATCTTTGATTCAGAGTCCCCATCTCACCCTGGACTGCC	out-of-frame	MTAIIKEIVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNl|gqmyanls*	.
TALL046	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	45	0	156	91	high	.	.	duplicates(9)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCACCTTCCTGAGCCACCCGTGGCCAGGCTCTGC	.	.	.
TALL046	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	16	5	58	77	high	.	.	duplicates(5),low_entropy(3),mismatches(2)	CTTGGCTGTTTGG___...GCCAGGGCCAAG___...GCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTT...___...GTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTT?TTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTgCCCGCCACTCAA___CCTCCAGCGGCCCG	.	.	.
TALL046	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	5	12	0	61	46	high	.	.	duplicates(3),low_entropy(2),mismappers(1)	CGCTGATTGGTCGGCACACCAATACGTAACGGCGACCGTGCGCGGCTCTCTAGCACCACCCCCGCTCCCTGACTGGCGAGGTTTCTGACCAGTCAGCAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAG...GCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGGGGCGGCGCCGCGAGAGACTTAAAGGGCCG...CGGGTGCCCACCACCGAGCTGTGCAGACCTCCCGGGCCCGCCCCGGCCCCCGCGCCCGCCTCGGTTACAGCGGAGCTGCCCGGCGACGGCCGCATGGTGCAGCTGAGTCCTCCCGCGCTGGCTGCCCCCGCC	.	.	.
TALL046	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	0	5	0	61	59	low	.	.	duplicates(1)	CAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGG...CCGGGCCCGCCCCGGCCCCCGCGCCCGCCTCGGTTACAGCGGAGCTGCCCGGCGACGGCCGCATGGTGCAGCTGAGTCCTCCCGCGCTGGCTGCCCCCGCCGCCCCCGGCCGCGCGCTGCTCTACAGCCT	.	.	.
TALL046	STIL	TAL1	-/-	-/-	1:47314036	1:47224098	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	61	92	low	.	.	duplicates(3),low_entropy(2)	CGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGG...CCGGACAAGAAGCTCAGCAAGAATGAGATCCTCCGCCTGGCCATGAAGTATATCAACTTCTTGGCCAAGCTGCTCAATGACCAGGAGGAGGAGGGCACCCAGCGGGCCAAGACTGGCAAGGACCCTGTGGTGG	.	.	.
TALL046	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	2	1	1	14	21	high	.	.	duplicates(2)	.	.	.	.
TALL046	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	10	28	12	99	52	medium	.	.	duplicates(5),low_entropy(3)	CCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTG...AACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAAgCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTG	.	.	.
TALL046	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	8	2	150	445	medium	.	.	.	AAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG___...GTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL046	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	2	10	0	17	52	medium	.	.	duplicates(1),low_entropy(1),mismatches(1)	CTGAGTCCGTGGCGCCGGCGCTGAGCGGGCCCCCGCCGCCCGCGCACTCCCGAGGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGCAGCAACAATGGCAAACGTGCATCTGCCAGTGGCCAGCAGCCAGCTGCATCCCGTTACCTGCCTCGTGAGGTGCCTCCACGCTTCCGCCAGCAAGAACAGAAGCAGCTATTAAAGAGAGGCCAGCCATTGCCTACGGGGACTCTAACCAGTGTGAGCCCAACCCAGGGTGCTGGGCCTGCAGGGGTAAGCCCACCTCCCCTACCTGGAGCCGGAACACAGCATC	.	.	.
TALL046	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	3	3	3	12	118	medium	.	.	duplicates(1)	CTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGG?CAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGG	.	.	.
TALL046	SPNS3	RP13-580F15.2	+/.	-/.	17:4482892	17:4483872	intron	intron	duplication/3'-3'	upstream	downstream	2	1	1	14	21	medium	.	.	duplicates(2)	.	.	.	.
TALL046	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	4	5	0	50	24	low	.	.	duplicates(1),low_entropy(1),mismappers(2)	GTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACG...TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAACACGGGACTATGAG	out-of-frame	FLDQSQKVLYKEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL046	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	4	2	42	20	low	.	.	duplicates(2),low_entropy(2)	CCGGCGGCCAACATGATGGAGAACCGGCCGCTGCCCGCCCTGCAGGTGCCCGAGCCGCAGGGTGCGCCCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAG	.	.	.
TALL046	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	3	3	2	42	10	low	.	.	duplicates(1)	GCTTGGACTGGATCTTACTCAGTCCATGGTGCCCAGCCTCTGCCCCAACATGCCCTCTGCATGTGACCGTCATGCCCTGGATGGAGCCACTCCTGGCTCACCCCACCTGCACTGCACTGTCCCCAGAGAGCCACCCCTCCACCCACTCAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAACTGCAGCATATAGTATCATGAGCTAATAAACAATTCCTGCTTTAAG	.	.	.
TALL046	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	2	3	29	9	low	.	.	duplicates(2)	GTTCTTATGGATCTTGGGTGTTCCTCCATGCAACTTGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAAT	out-of-frame	VLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL046	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	3	3	1	134	39	low	.	.	duplicates(1),low_entropy(1)	AGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTGCAGCT?CTGA...___CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGG...ACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTATCTCTGTTTCTGGGGTTTTTGCAGTGACTTTTTCTGTGGTATTTGCATACGTAGCAGATATAACCC...CAAGTTTAGTCACCAGTCCTGCAATTGGAGCTTATCTTGGACGAGTATATGGGGACAGCTTGGTGGTGGTCTTAGCTACAGCAATAGCTTTGCTAGATATTTGTTTTATCCTTGTTGCTGTGCCAGAGTCGTT	out-of-frame	KILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|maiciqfilm*	.
TALL046	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	134	279	low	.	.	.	AAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTG...CATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTATCTCTGTTTCTGGGGTTTTTGCAGTGACTTTTTCTGTGGTATTTGCATACGTAGCAGATATAACCCAAGAGCATGAAAG	in-frame	KQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDV	.
TALL046	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	106	279	low	.	.	duplicates(1),mismatches(1)	CTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCC...GACCCTTTTGCG___TgCTTAAAAAAAGTCaGCCAAGATTCCATtGTGCTGCTGATCTGCATTACAGTGTTTCTCTCCTACCTcCCGGAGGCAGGCCAATATTtCAGCTTTTTTTTA	out-of-frame	LVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL046	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21904258	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	6	0	0	14	20	low	.	.	low_entropy(2)	GCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAACACACAGGCAGCTGGATGTTGAGAGGAGCACATCAGCAGGC	out-of-frame	MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg*	.
TALL046	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	3	206	136	low	.	.	duplicates(2),read_through(1)	CTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___...AGCCTGTGTGCTTCCAGGCTCCCCAGAGACAAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCGGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCC	out-of-frame	PVCFQAPQRQGPLIPPWGWPGNTLVAVSIFLLLTGPTYLLFKLSPr|sqrttsmcqtwarclrlmfhptcltcpalpttsctlptwapalpplplapfrncppstlr*	.
TALL046	IL9R	WASH6P	+/+	+/+	X:156007607	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	3	156	136	low	.	.	duplicates(2),read_through(1)	CTGGCTTATACTTGAAGCCTTTGAGCTGGACCCTGGCTTTATCCATGAGGCCAGGCTGCGTGTCCAGATGGCCACACTGGAGGATGATGTGGTAGAGGAGGAGCGTTATACAGGCCAGTGGAGTGAGTGGAGCCAGCCTGTGTGCTTCCAGGCTCCCCAGAGACAAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG___GcTGAAGAGAATCTTCTACCAGAACGTGCCCTCTCCAGCGATGTTCTTCCAGCCCCTCTACAGTGTACACAATGGGAACTTCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCC?GCATTGCCAACGACCTCATGTACA?TGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCGGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCC	out-of-frame	WLILEAFELDPGFIHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIPPWGWPGNTLVAVSIFLLLTGPTYLLFKLSPRlKRIFYQNVPSPAMFFQPLYSVHNGNFQ|vpenyfyvpdlgqvpeidvpsylpdlp?iandlmy?adlgpgiapsapgtipelptfhtevaeplkadlqdgvltpppp	.
TALL046	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	191	136	low	.	.	.	CAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGAC...GCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCCCC	out-of-frame	MPQTCDGTGQMHLGr|sqrttsmcqtwarclrlmfhptcltcpalpt	.
TALL046	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	191	163	low	.	.	read_through(1)	ATGGGACTGGGCAGATGCATCTGGGAAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCC	out-of-frame	GTGQMHLGr|cspvpstllqstcrnmapssraprtlacrda	.
TALL046	IL9R	WASH6P	+/+	+/+	X:156004565	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	239	136	low	.	.	read_through(2)	CCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTC...CCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCCCCCACCACCACCCCCAGCTCCTGAGGTGCTGGCCAGTGCACCCCCACTCCCACCCTCAACCGC	out-of-frame	PALEPMTTLLSYELAFKKQEEAWE|vpenyfyvpdlgqvpeidvpsylpdlpgiand	.
TALL046	IRF1	C5orf56	-/-	+/-	5:132486557	5:132449666	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	2	3	0	180	107	low	.	.	duplicates(4)	CAGATATCGAGGAGGTGAAAGACCAGAGCAGGAACAAGGGCAGCTCAGCTGTGCGAGTGTACCGGATGCTTCCACCTCTCACCAAGAACCAGAGAAAAG___TCATGTGGGGATTCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCTCCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGGCTACATGCAGGACTTGGAGGTGGAGCAGGCCCTGACTCCAG|GCTACAAACTCTGGCACCTGCAAAAAACAAGGAAAGTAAATGATTGAAGCAGGGCACTGAAGGTGGGCCTTTG...AAGCCTGGATGGAAGTTGAAAGATGAGAGCCCATCTGTG___GAATTCTTTGGACCTTCTGGATATAAGCCCCAGTCGTCTGTCGGATATGTTACAGAGAATATCCTCTCCTCTTCCAGTCTCTGGCTCGCCTTTC...ACACTCTCAACATGGACCTCCTAACTGCTCTCGAGGATGGACAGCTGGCCTCAAGGGAACACTGCAAAGTGGCTCTAGGAAGAAGCCACTGTCCCTCCAGACCATAAAAATGGCTACCAAGGGCAGAGCCAGC	out-of-frame	DIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKVMWGFQP*YLL*WTQQLHSA**PQQLHSSRLHAGLGGGAGPDSr|lqtlapaknkesk*	.
TALL046	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	2	0	29	9	low	.	.	duplicates(1),low_entropy(1)	CCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAAC...CATGGCACGTTACATAGTGGTtCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAACACGGGACTATGAGGATGTGAATGAAGAAGATCTCCTGGAATAGAGG	.	.	.
TALL046	EEF1A1P24	SLC25A38	+/+	+/+	3:39359905	3:39389495	exon	splice-site	deletion/read-through	downstream	upstream	2	3	0	20	296	low	.	.	duplicates(2)	GAAGTCTGATGATGCTGCCATCATTGACATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCATACTAAACACCTCTGGGTCGCTTTGCTGTTTGTGATATGAGAC...GCCGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTTGCCCAGAAAG|TTACATCCGGTGATCAAGGCTTTCCTGTGTGGCTCCATCAGTGGGACCTGCTCTACCCTCCTTTTCCAACCTCTGGATCTCCTTAAAACACGCCTaCAAACCCTCCAGCCCTCAGATCATGG___GTCTAG	.	.	.
TALL046	ANKRD36	ANKRD36	+/+	+/+	2:97224879	2:97179738	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	0	4	0	126	54	low	.	.	duplicates(1)	GGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG|TGTCTTCTCAGAAACAACCAGCTGAGAAG___GCTACAAGTGACGACAAAGATTCTGTTTCAAATATAGCCACAGAAATAAAGGAGGGACCAATATCTGGGACAG___TGTCTTCTCAGAAACAACCAGCTGAGAAG___GCTACAAGTGACGAGAAAGATTCTGTTTCAAATATAGCCACAGAAATAAAGAAGGGACAACAATCTGGGACAG___TGTCTCCTCAGAAACAATCGGCCTGGAAG___GTTATATTTAAAAAGAAAGTTTCTCTTTTGAATATTGCCACAAGAATAATGGGTGGTGGGAAATCTGGAA	out-of-frame	GEQKRLEEYENNQPQ|cllrnnqlrrlqvttkilfqi*	.
TALL046	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	0	0	590	34	low	.	.	duplicates(2),mismappers(2)	CACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAA	.	.	.
TALL046	EEF1A1P6	DNAH11	-/-	+/-	7:22510524	7:21727889	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	4	2071	1	low	.	.	mismatches(3)	AAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAAcGGTCTCAGAACTGTTTGTTTCAATTGGCCATTTAAGTT...|...CTGCAGGAGAAA	.	.	.
TALL046	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	13	7	low	.	.	duplicates(1),low_entropy(1)	CAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAACTGTGAGAC...ACAACTGCCAAAGAATCTTCAAGAAGGAGGACTGCAAGTATATCGTGGTGGAGAAGAAGGACCC[a]AAAAAAGACCTGTTCTGTCAGTGAATGGATAATCTAATGTGCTTCTAGTAGGCACAGGGCTCCCAGGC	.	.	.
TALL046	PRKAR1B	PDGFA	-/-	-/-	7:550341	7:517490	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	0	3	223	11	low	.	.	.	CG___GGGAGATTGCACTGCTGCTGAACCGGCCCCGGGCGGCCACTGTCGTGGCCCGGGGGCCCCTCAAGTGTGTGAAGCTGGACCGGCCCCGCTTCGAGCGTGTGCTGGGGCCCTGCTCTGAGATCCTCAAGAGG...CAGCTCCCCAGTGTGGTGGCCGTGCCCTGCTCGTCTGTGTCGGGGGCCCGGGAGCCGCTGTGTGAG|GAAGCCGAGATCCCCCGCGAGGTGATCGAGAGGCTGGCCCGCAGTCAGATCCA	.	.	.
TALL046	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	1	3	1	low	.	.	.	CCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCG...CACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAG...ACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCT	out-of-frame	HKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwgl	.
TALL046	MCM9	RP11-210H10__A.1(8230),MCM9(21792)	-/-	./-	6:118826147	6:118791650	splice-site	intergenic	deletion/read-through	upstream	downstream	1	0	2	24	1	low	.	.	.	CTGGGATCGTATCATTTCCTCCTTTATCTTAGAAAATAAAG___GTTACCCAAGCAAATCAGAGAAGCTCTGGAGCATGGAAAAGATGAAAACCTATTTCTGCCTCATAAGGAATCTGCAGCCCACACTGTCTGAT...CTCATGCTCGCCTGATGTTTCGTGATACTGTAACTCTGGAAGACGCTATTACGGTGGTGTCAGTCATGGAGTCCTCAATGCAG___GGAGGTGCACTGCTAGGAGGTGTGAATGCCCTCCACACTTCCTTTCCTG...CAGTACCAGAGACAGTGTGAACTTATTCTGGAAAAGCTAGAGCTGCAGAGCCTCTTGAGTGAAGAGCTTAGAAGACTTGAAAG|GCATGTGAGAACAGACTAATACACAATGCGAAGACACAGGAAGAAGACAG	out-of-frame	QYQRQCELILEKLELQSLLSEELRRLEr|hvrtd*	.
TALL046	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528417	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	1	47	101	low	.	.	duplicates(1)	CCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTC	.	.	.
TALL046	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	37	82	low	.	.	duplicates(1)	GTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTG...CGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTC...AG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTAgATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCG	.	.	.
TALL046	SLC25A53	H2BFM(19424),LL0XNC01-240C2.1(664)	-/-	./-	X:104156878	X:104061878	splice-site	intergenic	deletion/read-through	upstream	downstream	1	1	0	24	32	low	.	.	mismatches(1)	GCTTAAGTGAGGGCGGCGGATGGGCGAAGGTCCGGTGACTGCGACTGTCGCTGCTTTCTGAGGCCACAGGAAAGGGGCCGTCGGTCGCCGCCATGACAGCGAGCGAGGCGGAG|AAACCTTCCTTCCTTCCAGATGTGTGTCAGTAGAATTACAGAGTGTCCACGGAAACAGCTCATGCCCTAGTGTACAGTGGTGCAGCCAATGAGTGACCTGAAGTCTATGAGCAACACTCATTGTCCCAATGTGGGACGAGTGACC	.	.	.
TALL046	DNAJC17	RMDN3	-/-	-/-	15:40773727	15:40745259	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	62	92	low	.	.	.	TGAAGATTTCCTGGTTGGAGGGACAGCCCCAGGATGCCGTGGGCCGCAGCCACTCAGGACTGTCAAAG|TTACACAACAGCCAATGCGGAGTCTGACAATGAGCGGGACTCTGACAAAGAAAGTGAGGACGGGGAAGATGAAGTGAGCTGTGAGACTGTGAAGATGGGGAGAAAGGATTCTCTTGACTTGGAGGAAGAGGCAGCTTCAGGTGCCTCCAGTGCCCTGGAGGCTGGAGGTTCCTCAGGCTTGGAGGATGTGCTGCCCCTCCTGCAGCAGGCCGACGAG	out-of-frame	KISWLEGQPQDAVGRSHSGLSK|lhnsqcgv*	.
TALL046	FBXL19	DLG1-AS1(134680),AC128709.3(6634)	+/+	./-	16:30930163	3:197438427	CDS	intergenic	translocation	downstream	downstream	0	0	2	121	7	low	.	.	.	GAAAAAG___GTGAAAGGAGGCCGAGAGAGGCACCTGAAGAAG___AAACCAAAGCCGCCTTTGGCCTCTGCAGAGGGCCCAGCGGTGCCGTCCCCGTCCCCGCAGAGGGAGAAGCTAGAGCGTTTCAAGCGGATGT...|...GCAGGGCTCCACTCTAACCCCAGACACAGATTATGAAGAGCCAGCAGGGCTCCACTCTAACCCCAGACACGGATTATGAAGAGCCAGCAGGGCTCCACTGTAAC	.	.	.
TALL046	TTC33	AC108105.1(192656),SNORA63(141892)	-/-	./-	5:40746797	5:40513071	intron	intergenic	deletion/read-through	upstream	downstream	0	0	2	62	16	low	.	.	.	GTTGACAACGATGAAGGGAACTGGCTTCATGCCATTAAACGTAGGAAAGAAATTCTTCTTGAAGGCTGTGCTGAGAAAAGTAAACAGCTGAAGGATGAAGGAGCCAGTaTGGCTGAAAATAAAAGG...|...AGGAGACCTTAAGATAGAAAAACTGCCAGGAGGGACCTGTAGGTCTGCTTTCTCCACTCATGTTTGGAGAACACGTCTCCAAAGAAATTCATCTGAACTTGATGCAG...AATGTCAGCTACAGAAATGCCCCAACTGATGAATTTCGTCATGAAGCAGAGCCTCAGAGCAAAAGCACATCAGCTAAGCATGCCCCAGTATGAGTGGCTGAGTATGCCATATTAGTCTTTCATAGTCTAC	.	.	.
TALL046	ING5	CDCA4	+/+	-/-	2:241712071	14:105011935	splice-site	splice-site	translocation	downstream	downstream	1	1	0	202	242	low	.	.	.	CTGAAGGACAAGATGGAGGGCAGTGATTTTGAAAGCTCCGGAGGGCGAGGGTTAAAAA___GCCGGGGTCAGAAAGAAAAAAGAGGGTCCCGGGGCCGAGGCAGGAGGACATCAGAGGAAGACACACCAAAGAAAAAGAAGCACAAAGGAGG|GACACAATGTTTGCACGAGGACTGAAGAGGAAATGTGTTGGCCACGAGGAAGACGTGGAGGGAGCCCTGGCCGGCTTGAAGACAGTGTCCTCATACAGCCTGCAGCGGCAGTCGCTCCTGGACATGTCTCTGGTGAAGTTGCAGCTTTGCCACATGCTTGTGGAGCCCAACCTGTGCCGCTCAGTCCTCATTGCCAA	out-of-frame	LKDKMEGSDFESSGGRGLKSRGQKEKRGSRGRGRRTSEEDTPKKKKHKGg|tqclhed*	.
TALL046	CBFA2T3	ACSF3	-/-	+/+	16:88898078	16:89145267	splice-site	splice-site	inversion	upstream	upstream	0	1	1	194	546	low	.	.	.	CCCCAGCATGCCGCCCCCACCGCCTGCCGCATCCCAGGGGGCCACACGCCCCCCCTCCTTCACGCCACACACAC___ATCGAGAGGACGGGCCTGCGACGCTGCCCCACGGCCGTTTTCATGGCTGCTTAAAATGGTCTATGGTCTGTCTCT|GGGACACCGTGGTGTTTAAGGATGGCCAGTACTGGATCCGAGGCCGGACCTCAGTGGACATCATCAAGACTGGAGGCTACAAGGTCAGCGCCCTGGAGGTGGAGTGGCACCTGCTGGCCCACCCCAGCATCACAG___ATGTGGCTGTGATTGGAGTTCCGGATATGACATGGGGC	in-frame	PSMPPPPPAASQGATRPPSFTPHTHREDGPATLPHGRFHGCLKWSMVCL|wDTVVFKDGQYWIRGRTSVDIIKTGGYKVSALEVEWHLLAHPSITDVAVIGVPDMTW	.
TALL046	HIVEP3	CTPS1	-/-	+/+	1:41628749	1:40983278	splice-site	splice-site	inversion	upstream	upstream	0	1	0	54	153	low	.	.	.	GGCGCCTAGGTGGAGGGTGGCTGCCGTAGGAGTGGACATGAATGCTGGCTTTCAGAGAGAACAGCGTTTCAGTTTTGGTCATCGGAAGTGGTGCCTTCAGCACAG|GTCAAAGAGTAAAATGAAGTACATTCTGGTTACTGGTGGTGTTATATCAGGAATTGGAAAAGGAATCATTGCCAGCAGTGTGGGCACAATACTCAAGTCATGTGGTTTACATGTAACTTCAATCAAAATTGACCCCTACATTAACAT	.	.	.
TALL046	TBC1D22A	C22orf34	+/+	-/-	22:47037198	22:49416928	splice-site	splice-site	inversion	downstream	downstream	1	0	0	92	16	low	.	.	duplicates(1)	TGATG___AGCAAGTGCACCGGCACCTGGACCAACACGAAGTGAGATACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCATCCGCCTGTGGGACACCTACCAG|AACCTGTGGCATATTCC	out-of-frame	DEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQ|nlwhi	.
TALL046	PQLC1	NFATC1	-/-	+/+	18:79950724	18:79410403	splice-site	splice-site	inversion	upstream	upstream	1	0	0	65	63	low	.	.	.	CGAGGCCGCAGGAGCGCGCGGAGCGGCGATGAGCAGGCGGCtGGTGGCCCGCGGGGCGCGGAGCCCGTGACAGCCTCGGCCAGGCGGGCGCTGCGATGGAGGCCGAGGGCCTGGACTGGCTCCTGGTGCCACT...CAGGACGCAGAACGCCGACGGCTTCTCCACCTACGTGTGCCTGGTGCTGCTGGTGGCCAACATTTTGCGGATACTCTTCTG|AACACTATGGCTATGCATCCTCCAACGTCAGCCCCGCCCTGCCGCTCCCCAC	out-of-frame	RTQNADGFSTYVCLVLLVANILRILF*|tlwlcilqrqprpaap	.
TALL046	PQLC1	NFATC1	-/-	+/+	18:79933969	18:79410403	splice-site	splice-site	inversion	upstream	upstream	0	1	0	31	63	low	.	.	duplicates(1)	AGCTGCAGATAGCAAGGATGAAGAAGTCAAGGTTGCCCCCAGGCGGTCCTTCCTGG|AACACTATGGCTATGCATCCTCCAACGTCAGCCCCGCCCTGCCGCTCCCCACGGCGCACTCCACCCTGCCGGCCCCGTGCCACAACCTTCAGACCTCCACACCGGGCATCATCCCGCCGGCGGATCACCCCTCG	in-frame	AADSKDEEVKVAPRRSFL|eHYGYASSNVSPALPLPTAHSTLPAPCHNLQTSTPGIIPPADHP	.
TALL046	PLEKHM2	SATB1	+/+	-/-	1:15684618	3:18420991	splice-site	splice-site	translocation	downstream	downstream	0	1	0	144	205	low	.	.	.	GGCGGCGGTGGCGGTGGCGGTGGCGGCGACGGTGGCAGCGCCATGGAGCCGGGGGAGGTGAAGGACCGGATCCTGGAGAACATCTCGCTGTCGGTGAAGAAG|GTGATCTTTAGACAGTGACTGAGTATGGATC...CATTGAATATGATTGCAAGGAGGAGCATGCAGAATTTGTGCTGGTGAGAAAGGATATGCTTTTCAACCAGCTGATCGAAATGGCATTGCTGTCTCTAGGTTATTCACATAGCTCTGCTGCCCAGGCCAAAG	out-of-frame	MEPGEVKDRILENISLSVKK|vifrq*	.
TALL046	SATB1	PLEKHM2	-/-	+/+	3:18415111	1:15716237	splice-site	splice-site	translocation	upstream	upstream	1	0	0	325	194	low	.	.	.	GTATCATGTGGTCACATTGAAAATTCAGTTACACAG___TTGCCCCAAACTAGAAGACTTGCCTCCCGAACAATGGTCGCACACCACAGTGAGGAATGCTCTGAAGGACTTACTGAAAGATATGAATCAGAGTTC...AGGAGTGCCCCCTTTCACAG|TTGCAGAGCTATTTTGCTGCATGTGAGGATGAGATCCCTGCCATCCGGAACCATGACAAGGTCCTACAGCGTCTGTGTGAGCACCTGGACCACGCCCTGCTGTACGG___ACTGCA	in-frame	ECPLSQ|LQSYFAACEDEIPAIRNHDKVLQRLCEHLDHALLYGL	.
TALL046	ZMYM2	PITPNC1	+/+	+/+	13:20036907	17:67578184	splice-site	splice-site	translocation	downstream	upstream	1	0	0	314	208	low	.	.	.	AGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG___GCTGCAAATTATTATACAAACAGGATTTTGCCAGACGTTTAGGATTGAGATGTGTTACTTGCAACTATTGTTCTC...GGAGCAACTAAAGAACTCGATGGTGTTGTGAGAGATTTCTGCAGTGAAGATTGCTGTAAAAAA[a]TTTCAGGATTGGTACTACA|AGTGTTCCTTTCTGCCGAAATTCTCCATTCATATAGAAACCAAGTATGAG	out-of-frame	GATKELDGVVRDFCSEDCCKKisglvlq|vflsaeilhsyrnqv*	.
TALL046	BSG	LINC01089	+/+	-/-	19:571579	12:121796242	splice-site	splice-site	translocation	downstream	downstream	0	1	0	69	351	low	.	.	.	CCACAATGAAGCAGTCGGACGCGTCTCCCCAAGAAAG|GAATTCCTGGTGcCTGGAAGGGGGgGTGACTCAGGCCCTCAACCTCTAGCAG___AGTGCCTTGGCTCCCTCCTGTCGTCCTtGGGAACCTCGGCCCC...GCCAGGCCTAGTGTGCCAGCCAGCGCTCAGCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCATTGCACTGCTTCCCCTAAGACTGTGACCTCCTGGAAGGCTGGAGCACAACTGCCTCTCAATAAACGTG	out-of-frame	MKQSDASPQEr|nswcleggvtqalnl*	.
TALL046	TRIM24	ZC3HAV1	+/+	-/-	7:138460912	7:139047853	splice-site	splice-site	inversion	downstream	downstream	0	1	0	282	326	low	.	.	.	CCGCCACCCGTCCCTGCCCCCGGCTCGCCGGTCAGCGGCTCGTCGCCGTTCGCCACCCAAG|GAATTTACTTTGCAAAAGATGCCATCTATTCCCACAAAAATTGCCCGTATGATGCCAAAAACGTCGTTATGTTTGTAGCCCAAGTTCTGGTTGGAAAGTTTACTGAAGGAAATATAACGTACACGAG	in-frame	PPPVPAPGSPVSGSSPFATQ|gIYFAKDAIYSHKNCPYDAKNVVMFVAQVLVGKFTEGNITYT	.
TALL046	ZMYM2	PSPC1	+/+	-/-	13:19960026	13:19709599	splice-site	splice-site	inversion	downstream	downstream	0	1	0	196	315	low	.	.	duplicates(1)	GAATCGCCTTCAGCCCTGTCTGGTGCATCCTTGGCAGAAAGTGAGGAGGAAAACACCCCCATT|AGAGAACAGGAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAG___ATGCGTTTAGCCCAGCCCCTGCTGGTAACCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAG	.	.	.
TALL046	RAB35	NUCKS1	-/-	-/-	12:120103826	1:205729621	splice-site	splice-site	translocation	upstream	downstream	0	1	0	109	968	low	.	.	.	GGCAGGAGCGCTTCCGCACCATCACCTCCAC|AAATAGGAAGGTTGTTGATTACTCACAGTTTCAGGAATCTGATGATGCAG___ATGAAGATTATGGAAGAGATTCGGGCCCTCCCACTAAGAAAATTCGAT...AAGATAG___TGAGGACTCAGAAGACAAAGATGTGAAGACCAAGAAGGATGATTCTCACTCAGCAG___AGGATAGTGAAGATGAAAAAGAAGATCATAAAAATGTGCGCCAACAACGGCAGGCGGCATCTAAAGCAG	in-frame	QERFRTITSt|NRKVVDYSQFQESDDADEDYGRDSGPPTKKIR	.
TALL046	PNN	PPIG	+/+	+/+	14:39179246	2:169630774	splice-site	splice-site	translocation	downstream	upstream	1	0	0	1553	276	low	.	.	duplicates(1)	CGGCGAATATTTGGCTTGTTGATGGGTACCCTTCAAAAATTTAAACAAGAATCCACTGTTGCTACTGAAAGG___CAAAAGCGGCGCCAGGAAATTGAACAAAAACTTGAAGTTCAGGCAGAAGAAGAGAGAAAGC...CAGACAGAACTGCGGCTTTTGGAACAGAAAGTTGAGCTTGCGCAGCTG|TTAAGAAAGAAGAAAAGAAAAGGCATAAATCATCATCATCTTCCTCCTCCTCATCTAGTGACTCAGATAGCTCAAGTGATTCTCA	out-of-frame	QTELRLLEQKVELAQL|lrkkkrkginhhhlppphlvtqiaqvil	.
TALL046	HMGB2	BRPF3	-/-	+/+	4:173334274	6:36200295	splice-site	splice-site	translocation	upstream	upstream	0	1	0	6209	36	low	.	.	.	CCGGAGCCCCGTGAGGGAAGCGTCTCCGTTGGGTCCGGCCGCTCTGCGGGACTCTGAGGAAAAGCTCGCACC|AGGCCTGTCCCCTCAGTTCCCAGGTGCCATGAGGAAGCCTCGTCGGAAGTCCCGGCAGA...GGATATCACCGAATGCAATAGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGGCAAGTCCAAGAAACCCTCATCCAAGGGCAAAAAGAAGGAATCCTGCTCCAAGCATGCATCTGGTACTTCCTTCCAC	.	.	.
TALL047	CIC	CIC	+/+	+/+	19:42291466	19:42290233	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	47	44	9	261	215	high	.	.	duplicates(8),mismatches(6)	AG___...AGTGGCCCCAATGGGCCAGTACCCCTGGGCATCCTG...___...AACCAGGTGCCCTGGGCAAGGCTGGGGGAATCACCCAGGTACAGTACATCCTGCCCACGCTGCCCCAGCAGCTTCAGGTGGCACCTGCCCCAGCACCAGCCCCTGGGACCAAGGCAGCGGCTCCCAGCGGCCCTGCACCCACCACCAGCATCCGTTTCACCCTCCCACCGGGCACTTCCACCAACGGCAAAGTCCTGGCTGCCACTGCACCCACTCCTGGCATCCCCATCCTGCAGTCTGTACCCTCCGCCCCACCCCCCAAAG|GGCTTTGGTCGGAAGGTGTTTTCACCTGTGATCCGTTCCTCCTTTACCCACTGCCGCCCCCCACTGGACCCTGAGCCCCCAGGGCCCCCGGATCCTCCTGTAGCCTTTGGCAAAGGCTATGGTTCCGCCCCATCCTCCTCTGCGTCCTCGCCTGCTTCCTCCTCAGCCTCGGCAGCCACCTCCTTCTCACTGGGCTCAGGAACCTTCAAGGCCCAGGAGTCTGGTCAGGGCAGCACAGCGGGCCCCCTACGGCCCCCACCCCCTGGGGCTGGGGGTCCAGCGACACCTTCCAAG...CCCGAAAGTGTGGGTGGCCTGGAGCCACCAGGCCCCTCAGTCATCGCGGCCCCTCCCAGCGGAGGAGGAAACATCCTGCAGACACTGGTGCTGCCCCCAAACAAGGAGGAGCAAGAGGGCGGCGG	out-of-frame	PGALGKAGGITQVQYILPTLPQQLQVAPAPAPAPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPK|glwsegvftcdpfllyplppptgp*	.
TALL047	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	9	8	0	60	90	high	.	.	duplicates(1),low_entropy(3),mismatches(4)	CTGaCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCC	.	.	.
TALL047	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	9	1	42	90	high	.	.	duplicates(2),low_entropy(1),mismatches(5)	AATTACCTCATTGTGGATCTGCCAGGGCCAAG___...TTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCT...GCCACCAACCACAGCcCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAA	.	.	.
TALL047	ASXL2	LINC01317	-/-	+/+	2:25759482	2:34061019	splice-site	splice-site	inversion	upstream	upstream	0	4	2	37	15	high	.	.	mismappers(2),mismatches(2)	CAAACTCCAGCTTTTCTTCCTtAtTTtAAtTGGAAAATACTTTACTAGGCTTGGGGAAGAAGTCATTCCAGAGATCTGAGAGACTCCATACCA___GACAAATGAAAAGAACTAAATGTGCTGACATTGACGTTGAGACACCGGACTCCATTCTGGTTAATACAAATCTGCGAGCACTGATCAACAAGCACACATTTTCAGTCCTTCCTGGAGATTGCCAGCAACGACTGCTTTTACTACTCCCAGAGGTAGATCGACAG|TGTGTGTGGTATCTAGATGAGATGCATGGTGATGACTGGAGACTGGGCGTGATGAATGACTTAGGAAACCTCTGGAGGGTGCCTGCTTTGTGGCCATAAACCACTGTGCCCATGTGGAAAACACTGCAGTCCTGGGGCAGAAGATAAACTTCATGCTTGAaAAAAAAAAAAAAAACAACCAAAAG___AGGTGAATCACTTCAAAGAGAAGGACCAGATTCTCATGGACCCCACTGC	out-of-frame	NSSFSSlf*lENTLLGLGKKSFQRSERLHTRQMKRTKCADIDVETPDSILVNTNLRALINKHTFSVLPGDCQQRLLLLLPEVDRQ|cvwyldemhgddwrlgvmndlgnlwrvpalwp*	.
TALL047	TLX1NB	RP11-236B18.5	-/-	-/-	10:101126960	10:90997828	splice-site	intron	deletion	upstream	downstream	0	4	1	64	33	high	.	.	.	AGAAAACCAAGGCACTGAAAGCTGGAAAGGGGCAGACCAGACGCAAACACTGCTTTCTTGACTCCACTCACTACAAGCTGCTTCCTTAAGCCTAAACTTGGCTCTTGCCTCACAGGACTATCTTGCAGGAACCTAG|GAGAAATTTGGATACAGAGACAGATGCACACAGAGGGAAGATGATGGGAAGGGACACGGGGAGAAGATGGTCATCCCCATGCCAAGGAAGGAGGCCTGGAACAAATTCCCCTTCACAGCACTCAGAAGAAACCAGCCCTGCTGACACTTCGAGTTCAGACTTTTAGCTTCCAGAACTGTGAG	.	.	.
TALL047	TLX1NB	LINC00502	-/-	+/-	10:101126960	10:91056366	splice-site	intron	deletion/5'-5'	upstream	downstream	1	2	0	64	20	high	.	.	.	ACCAAGGCACTGAAAGCTGGAAAGGGGCAGACCAGACGCAAACACTGCTTTCTTGACTCCACTCACTACAAGCTGCTTCCTTAAGCCTAAACTTGGCTCTTGCCTCACAGGACTATCTTGCAGGAACCTAG|GGACTGGAAGAGGTAATTTTTCTCAGAAAGAAGCAAACATTAATATGTGTTGGGCACTGTCTGATGGCTTGGCTCTAAGTCCAGGGCAGTTGCCCTTGTCTTCTAAGTACTGTACAGAGCGAAAAGGCTTACCAAAATCCA	.	.	.
TALL047	CD1B	CD1C(1408),CD1B(32913)	-/-	./-	1:158329852	1:158295038	splice-site	intergenic	deletion/read-through	upstream	downstream	4	11	0	4404	33	medium	.	.	duplicates(1),low_entropy(2),mismatches(1)	AGGAGGATTGGATTTCCTGAGTGTCAAGAATGCTTCATGTGTGCCTTCCCCAGAAGGTGGCAGCAGGGCACAGAAATTCTGTGCACTAATCATACAATATCAAGGTATCATGGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|GTCACAGGGTGACTAAGGGTGCAGGAGAGTCACCTAGGGCCTCCTGGTGCCAAGGAAATGAGCAATGGAAGCAGGACCCAAGCTGG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCTGGGCAATGGAATGTGTGGTGTTGGAAGCATTAGCCAGCTCCAGTC	out-of-frame	GGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQRQ|ghrvtkgagespraswcqgneqwkqdpswercncpis*	.
TALL047	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	10	2	41	23	medium	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(2)	TCCTTtTTtCCCAAATGCtGGCAGAGCtCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTG...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAG	.	.	.
TALL047	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	9	3	0	218	60	medium	.	.	duplicates(1),low_entropy(2),mismappers(5),mismatches(2)	TTTCAAACA___GGCTGGTGAATTACCAGATCTCCGTCAAGTGCAGTAACCAGTTCAAGTTGGAAGTGTGTCTTTTGAATGCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCT...AACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGAAA	.	.	.
TALL047	TLX1NB	RP11-236B18.2(6581),LINC00502(34195)	-/-	./-	10:101126960	10:91012971	splice-site	intergenic	deletion	upstream	downstream	4	0	0	64	9	medium	.	.	inconsistently_clipped(1)	ATTTACTCCAAATTTCAAGTCCAGCTTTTTAGAAAGTAGAAGACTGTCTACTCCCCAGGTATGGAGCCCAGGCCCTGAGGCAGGACG___ATGAGAAAACCAAGGCACTGAAAGCTGGAAAGGGGCAGACCAGACGCAAACACTGCTTTCTTGACTCCACTCACTACAAGCTGCTTCCTTAAGCCTAAACTTGGCTCTTGCCTCACAGGACTATCTTGCAGGAACCTAG|ATGGGACCGCTGAGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTACGTTATG___GTAACTTTGGGCTACcTtATGATGGCCCAGATGTCTCTGATCCTGTAGTGTGGTGCCCTAG	.	.	.
TALL047	CNIH3	SCFD2	+/+	-/-	1:224435187	4:52885866	splice-site	splice-site	translocation	downstream	downstream	0	2	0	6	96	medium	.	.	.	GGGATGGCAGAGTTGGCGTGCGTGCGTGAGTCCACCAGTGTGGCATGGGCATGTAAGGTGCGCGGAGGGACTGCACCTTCTCCATCAGGTGCAGAAG|GTGAGCCGGCCTCATCCTAGTGACTACCCCCTCCTGATCCTCTTTGTGGTAGGTGGGGTCACAGTCTCTGAAGTGAAAATGGTCAAAGATCTTGTGGCATCGTTGAAGCCAGGAACCCAG___GTAATCGTGCTGTCCACACGACTCCT	.	.	.
TALL047	RP11-554D15.1	EEF1A1	+/-	-/-	6:74234129	6:73519473	intron	CDS	deletion/3'-3'	upstream	downstream	0	0	19	0	65535	low	.	.	duplicates(223),inconsistently_clipped(1),low_entropy(55),mismappers(22),mismatches(76)	ACTTGGATATAC|TGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGGACATCTCAG___GCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTAC...ACTCCTGAGG	.	.	.
TALL047	RP11-403P17.6	CMTM2	-/.	+/.	16:66565982	16:66579720	exon	CDS	deletion/read-through/3'-3'	downstream	upstream	6	4	0	868	259	low	.	.	.	.	.	.	.
TALL047	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	3	5	0	11	12	low	.	.	low_entropy(2)	GGGGAGACGTGGTGAGCAGTAGCCAGCAGCTGGTGTGCCGTGGACGCCGCTGACCGCCGCGCGCCCGAACCGGGTGTCCACATGAGTGCCTCTCCCAGCAGATCCAG...CAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGC	.	.	.
TALL047	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	5	0	277	492	low	.	.	mismatches(1)	CCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGcAAATAGAGAGGAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL047	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	15	492	low	.	.	read_through(13)	TGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGA...CAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAA	out-of-frame	QEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL047	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	3	0	11	9	low	.	.	mismatches(1)	CTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGG	.	.	.
TALL047	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	254	141	low	.	.	duplicates(1)	AGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCcCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCT...ACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCA	.	.	.
TALL047	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	38	40	low	.	.	.	GGAAACCCTCGGCCAATCAGAGAGGGCTGGGGCGGCGCCTGCTAGAAGGCTTAGCACTGCAGGGCTCTGGGCGGGAAGGCTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGCAAGAGAGAAAGTGAATACGCTGATATAAGAAGCAAG___AAACCTTCCTTCCTTCCAGATGTGTGTCAGTAGAATTACAGAGTGTCCACGGAAACAGCTCATGCCCTAGTGTACAGT	.	.	.
TALL047	DNAH14	H3F3A	+/.	+/.	1:225364321	1:226071159	intron	intron	deletion	downstream	upstream	0	0	3	1	69	low	.	.	low_entropy(1),mismappers(2),mismatches(4)	.	.	.	.
TALL047	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	1	84	191	low	.	.	duplicates(1)	CCTCTTTAGTATCACAAAGCTGGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAAC...AACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG	.	.	.
TALL047	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	2	1	0	5	5	low	.	.	mismappers(1)	AGAAGGATTAAAAGAAGTAGCAATCTATATTTTAAGAAGAGATTACTGTAATTTCTTTCAGAAG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAG	out-of-frame	EGLKEVAIYILRRDYCNFFQKPVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprv	.
TALL047	RP11-286B14.1	EEF1A1P11	+/.	+/.	1:95703056	1:96447401	intron	exon	deletion	downstream	upstream	0	0	3	0	14	low	.	.	mismatches(5)	.	.	.	.
TALL047	NCALD	YWHAZ	-/-	-/-	8:101727168	8:100948702	intron	CDS	deletion	upstream	downstream	0	0	3	0	2842	low	.	.	mismappers(1),mismatches(4)	ATGGTATTCTT...|...CAAGTATTGAACAAAAGACGGAAGGTGCTGAG[a]AAAAAACAGCAGATGGCTCGAGAATACAGAGAGAAAATTGAGACGGAGCTAAGAGATATCTGCAATGATGTACTG___TCTCTTTTGGAAAAG	.	.	.
TALL047	EEF1A1P13	ANKH	-/-	-/-	5:14652670	5:14712741	exon	intron	deletion/read-through	downstream	upstream	0	0	3	405	16	low	.	.	mismappers(2),mismatches(6)	...GGATGGCAATGCCAGTGGAACCAcGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTAcTGTTCCTGTTGGCCGAGTGGAGACTGGTgTTCTCAAACCCG|...CACGAGACT	.	.	.
TALL047	RPL6P27	LAMA1	-/.	-/.	18:6463011	18:6965256	exon	intron	deletion	downstream	upstream	0	0	3	205	0	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	.	.	.	.
TALL047	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	1	0	29	4	low	.	.	mismatches(1)	CACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCaCTTGCACCTCCATC	.	.	.
TALL047	EEF1A1P6	FAM126A	-/.	-/.	7:22511606	7:22955449	exon	intron	deletion	downstream	upstream	0	0	3	22970	1	low	.	.	mismappers(1),mismatches(5)	.	.	.	.
TALL047	RP11-556K13.1	OLFM3	-/-	-/-	1:101786798	1:101829518	exon	intron	deletion/read-through	downstream	upstream	0	0	3	5	1	low	.	.	mismatches(3)	...ACCTACCATTGCGCTGTGTAACACAGATTCTCCTCTGcGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAgCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTCGGGAAGTTCTG...CCCGTGAACACCCATGGGAGGTCATGCCTGATCTGTACTTCGACAGAGATCCTGAAGAGATTGAAAAAGAAGAGCAGGCaGCTGCTGAGAAGGCAGTGACCAAGGAGGAATTTCAGGGTGAATG|...CACTGAAGAAAAT	.	.	.
TALL047	SPIDR	MCM4	+/+	+/+	8:47634275	8:47977041	intron	3'UTR	deletion/read-through	downstream	upstream	0	0	2	2	1255	low	.	.	low_entropy(3),mismappers(2),mismatches(8)	GAGTTCAAGACCAGCCTGGCCAAGATGGTGAA...|...GGATCATGAGGTCAGGAGTTCAAGACCAGCCTgGCCAAGATGGTGAAACCCCGTCTCTAGTAAAGATAACAAAAAATTAGCTGGGCTTGATGGCATGCGCCTGTAATCCCAGCTACTCGGGAG	.	.	.
TALL047	EIF3E	TMEM74	-/.	-/.	8:108292433	8:108673820	intron	intron	deletion/read-through	downstream	upstream	0	0	2	12	1	low	.	.	mismappers(1)	.	.	.	.
TALL047	KLF10	NCALD	-/-	-/-	8:102649114	8:102123213	3'UTR	intron	deletion	upstream	downstream	0	0	2	301	1	low	.	.	.	CTTATGTCATCAGTAAAGTACCTTTATGTTATGAGGATATAATGTGTGCTTTATTGAATTAGAAAATTAGTGACCATTATTCACAGGTGGACAAATGTTGATGTTGTCCTGTTAATTTATAGGC...|...AGCTCGCTCAAAGT	.	.	.
TALL047	CLSTN2	SLC25A36	+/.	+/.	3:140198750	3:140954117	intron	intron	deletion	downstream	upstream	0	0	2	1	2	low	.	.	.	.	.	.	.
TALL047	TOP2B	AC133680.1	-/-	+/-	3:25598404	3:25125326	CDS	intron	deletion/5'-5'	upstream	downstream	0	0	2	2152	1	low	.	.	mismappers(1)	CAGGAAAACATCCAAAACAACAAGCAAG___AAACCGAAGAAGACATCTTTTGATCAGGATTCAGATGTGGACATCTTCCCCTCAGACTTCCCTACTGAGCCACC...|...TCCCAGGCAAAT	.	.	.
TALL047	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	1	0	41	6	low	.	.	mismappers(1),mismatches(2)	CACAATCGACACATCATCACAGCACTGCCTTTTATCCTGGG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGT	out-of-frame	tidtssqhcllswGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL047	KIAA2018	ZBTB20	-/.	-/.	3:113654128	3:114479719	3'UTR	intron	deletion	downstream	upstream	0	0	2	9	1	low	.	.	.	.	.	.	.
TALL047	KCNIP1	NPM1	+/+	+/+	5:170687875	5:171392767	intron	CDS	deletion	downstream	upstream	0	0	2	0	17178	low	.	.	low_entropy(1),mismappers(2),mismatches(2)	ATATAGTAAC...|...GTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAG___AAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGATGATGATGAAaAGGATGATGAaGAAGA	.	.	.
TALL047	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	815	90	low	.	.	low_entropy(1),mismappers(1)	CTGGCTCCCTACCTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCG	out-of-frame	GSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqis	.
TALL047	SLC39A9	NAP1L1	+/+	-/-	14:69424202	12:76074239	splice-site	splice-site	translocation	downstream	downstream	0	2	0	65	6554	low	.	.	.	CTGGCCTTCTCTGTGGAACTGCTCTGGCAGTCATCGTGCCTGAAGGAGTACATGCCCTTTATGAAGATATTCTTGAGG|ATATTTGGAGTTCTTACAACATGGCAGACATTGACAA___CAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGAAGTAGAAGAAGAGGAAACTGGTGAAGAAACAAAACTCAAAG___C	in-frame	GLLCGTALAVIVPEGVHALYEDILE|diwssynMADIDNKEQSELDQDLDDVEEVEEEETGEETKLK	.
TALL047	DNA2	HNRNPH3	-/-	+/+	10:68468123	10:68341174	splice-site	splice-site	inversion	upstream	upstream	2	0	0	38	2680	low	.	.	.	TTAGGAATGACTG___GTGTTCTGTTCCAGTAGAGCCAGGAGATATCATTCATTTGGAGGGAGACTGCACATCTGACACTTGGATAATAGATAAAGATTTTGGATATTTGATTCTGTATCCAGACATGCTGATTTCTGGCACCAGCATAGCCAGTAGTATTCGATGTATGAGAAGAGCTGTCCTGAGTGAAACTTTTAGG|TTCTTCTCACCACTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGA	in-frame	RNDWCSVPVEPGDIIHLEGDCTSDTWIIDKDFGYLILYPDMLISGTSIASSIRCMRRAVLSETFR|FFSPLNPIRVHIDIGADGRATGEADV	.
TALL048	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	4	93	4	339	226	high	.	.	duplicates(13),low_entropy(4),mismatches(1)	CCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCACCTTCCTG	.	.	.
TALL048	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	5	3	0	498	226	low	.	.	low_entropy(1)	GCTGGACTCTGCTCAGAGGAACCTGTACAGGGATGTGATGCTGGAGAATTATAGGAACATGGCTTCCCTGG___TGGGACCATTCACCAAACCTGCTCTGATCTCCTGGTTGGAAGCAAGGGAGCCATGGGGCCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCC...AGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCA...CCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCACCTTCCTGAG	out-of-frame	LDSAQRNLYRDVMLENYRNMASLVGPFTKPALISWLEAREPWGLNMQAAQPKGNPVAAPT|gmsrgqfgqgqepldmffwvneisgeityppqkadapavspespqkkp	.
TALL048	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	12	22	4	101	57	high	.	.	duplicates(4),mismatches(3)	CCGCACTGCTCACTCCCGCGCAGTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACC...TTTTCCTCCAAACGTAGGCCTTCTCCGCGCTGAAGTTTTCCCCAGCAGCGTAATACT___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAGGTCTGTGTGATAAAAGAAGAGCCTTG...___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCC	out-of-frame	fsskrrpspr*sfpqqrntIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL048	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	5	7	1	101	85	high	.	.	duplicates(2),mismatches(1)	CCCGCGCAGTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGgTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGGAGATCTATTTGGAATGTATCTAACTCCAAAGAAACCATCAGAG...GTTCCCAAACATCTAAAGAAGAGTTTTAGTCTAAGTGGAATGGCTGGAGAGTATGGGAAGAGTTCTTTCCTACTCcGTCCAAACACAAGCCTCTGTGACATTTATCAAAGAAATGCAGCCCTTTAAATCTGGG	out-of-frame	MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDs|vpfdeknkphsdstaeikektsvfwppdicylclkn*	.
TALL048	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	3	5	5	101	22	medium	.	.	duplicates(1),low_entropy(1),mismatches(2)	CTGGCACCACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCC...___TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAAC	out-of-frame	GTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL048	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	4	23	4	95	65	high	.	.	duplicates(2),low_entropy(1)	GGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGGGGCGGCGCCGCGAGAGACTTAAAGGGCCGCGACGCGGCGACGGCCGAAGCGCGCCATCGGGTGCCCACCACCGAGCTGTGCAGACCTCCCGGGCCCGCCCCGGCCCCCGCGCCCGCCTCGGTTACAGCGGAGCTGCCCGGCGACGGCCGCATGGTGCAGCTGAGTCCTCCCGCG...CGCTGCTCTACAGCCTCAGCCAGCCGCTGGCCTCTCTCGGCAG___CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTAC	.	.	.
TALL048	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	3	12	1	95	88	high	.	.	.	GTTTCTGACCAGTCAGCAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGGGGCGGCGCCGCGAGAGACTTAAAGGGCCGCGACGCGGCGACGGCCGAAGCGCGCCATCGGGTGCCC...GCCCGCCTCGGTTACAGCGGAGCTGCCCGGCGACGGCCGCATGGTGCAGCTGAGTCCTCCCGCGCTGGCTGCCCCCGCCGCCCCCGGCCGCGCGCTGCTCTACAGCCTCAGCCAGCCGCTGGCCTCTCTCGGCAG___CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCC	.	.	.
TALL048	STIL	TAL1	-/-	-/-	1:47314036	1:47224098	splice-site	splice-site	deletion/read-through	upstream	downstream	2	10	0	95	130	high	.	.	duplicates(3)	GGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAGCAGAATGTGAACGGGGCCTTTGCCGAGCTCCGCAAGCTGATCCCCACACATCCCCCGGACAAGAAGCTCAGCAAGAATGAGATCCTCCGCCTGGCCATGAAGTATATCAtCTTCTTGGCCAAGCTGCTCAATGACCAGGAGGAGGAGGGCACCCAGCG	.	.	.
TALL048	CLN8	ARHGEF10	+/+	+/+	8:1771597	8:1857960	splice-site	splice-site	deletion/read-through	downstream	upstream	12	4	3	91	27	high	.	.	duplicates(1),low_entropy(1)	CCCAG___ATTGAAGATGGATACGTGACAATCCCAGGGACCGCTGCACTGACTTCATTTCCTTAGACAAGACACAGTGTAGGGCCCGGCCCGTGTTGGCCCCAGGACTCCTTTGGAATATAGCTGTGGACAATGA...CGTCTTTGTGGTCTGCCACCAGCTGTCCTCTTCCCTGAATGCCACTTACCGTTCTTTGGTGGCCAGAGAGAAGGTCTTCTGGGACCTGGCGGCCACGCGTGCAGTCTTTGGTGTTCAGAGCACAGCCGCAGGCCTGTGGGCTCTGCTGGGGGACCCTGTGCTGCATGCCGACAAGGCGCGTGGCCAGCAGAACTGGTGCTGGTTTCACATCACGACAGCAACGGGATTCTTTTGCTTTGAAAATGTTGCAGTCCACCTGTCCAACTTGATCTTCCGGACATTTGACTTGTTTCTGGTTATCCACCATCTCTTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGTTGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAG|AAAATGAAATGAAATATGATACCAATAATAATGAAGAGGAAGAGGGAGAACAGTTCGATTTTGACAGTGGAGATGAAATCCCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGGAGGTGCTGGAGCCAGTGAAGCCCCTGCACCCACAG___GAGGTGAGGATGGAGCTGGAGCAGAAACC	out-of-frame	VFVVCHQLSSSLNATYRSLVAREKVFWDLAATRAVFGVQSTAAGLWALLGDPVLHADKARGQQNWCWFHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLK|kmk*	.
TALL048	CLN8	ARHGEF10	+/+	+/+	8:1771597	8:1843353	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	3	91	5	low	.	.	mismatches(1)	CTGGTTTCACATCACGACAGCAACGGGATTCTTTTGCTTTGAAAATGTTGCAGTCCACCTGTCCAACTTGATCTTCCGGACATTTGACTTGTTTCTGGTTATCCACCATCTCTTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGTTGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAG|GAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGACCAGCGAGAGCCCCTGCCTCCCGCTCCTGCAG___AAAATGAAATGAAATATGATACCAATAATAATGAAGAGGAAGAGGGAGAACAGTTCGATTTTGACAGTGGAGATGAAATCCCAGAAGCGGAC	out-of-frame	WFHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLK|ellpltelreasgaaawtsespclpllqkmk*	.
TALL048	ZNF37A	RP11-508N22.13(9343),RP11-508N22.6(1934)	+/+	./+	10:38096632	10:38159636	splice-site	intergenic	deletion/read-through	downstream	upstream	11	4	0	58	23	high	.	.	duplicates(1),low_entropy(1),mismatches(1)	CTGCCATATGGCTCCAGGTTTGTTTTTCTCCCCGGCACTCTGACGGGGAGGGCTCCCGGCATCTCCTGGCGTCCGGGTAGAGGACGCGGAGG___ATGCTGAGCTGCTGGCGCACTGCAGCACAACTAGAGATGTACGGATGCCCCCATCTTGATCTTACAGAATCAGAGGTACAGCCGCGAGAAAG___AGTCAAGAACAGACAGAGTCGCTTGAGGACTCAGGAGGGTGTTTGCTGCGTTGACAACAGA___CTACACCCTCACAGTTTGCTCTGCTCTTCCAACACCAGTGGAAGATGATCACATCCCAG|GTTGTATCAACTGTTGGGGTGATCAGACCCAACACCAGGCCATGGGGTCTATGAAGTCTGGCGGCATCAAAGGAATGAGGAAAGACAAGTTAAGAGAGAAAGTGGGACCAGGGGGCCAATGCTAGTATGGAGGCTGCGAAGGCCCCAAGCTCTGGGAGCCCACACTGTTTATTGGTGATCAAAGAAACAGTTGGTGAGGATGTGGGGGTTGAAAG	out-of-frame	MITSQ|vvstvgvirpntrpwgl*	.
TALL048	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	4	11	0	35	97	high	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(2)	GAGCCGGCTCCCCAGCCTGCTTTCTCCTGCCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...G...___...CC...___...ATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGC	.	.	.
TALL048	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	7	4	2	155	15	high	.	.	duplicates(2),mismatches(3)	GCTGAAGAGCACCATCCAGACGGCCGAGGCGCTGCGGCTGCCCTACGAGCAGTGGAAGGCGCTCAATGAGATCGACGCG___TCCTACCAGGACCTGGTCCAGCGCTTGGAGCCAGTGATCATGGAGCTGGAGCGGCAGGAGAATGTGCTGGTCATCTGCCACCAGGCCGTCCTGCGCTGCCTGCTTGCCTACTTCC...AGATGCCCTACCTGAAATGCCCTCTTCACACCGTCCTGAAACTGACGCCTGTCGCTTATG___GCTGCCGTGTGGAATCCATCTACCTGAACGTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAG?TAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGACCAATTAACCTGAGCTGCTGAGGACTCTGAGAAGCTTCCCTTATGCTGTGGTTATGTGGGATTTCCC	out-of-frame	MPYLKCPLHTVLKLTPVAYGCRVESIYLNVESVCTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|e?ksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
TALL048	PAK6	SERF2	+/+	+/+	15:40253289	15:43800060	splice-site	3'UTR	deletion	downstream	upstream	2	5	1	24	90	high	.	.	duplicates(1)	GGCCCGGCTCCCACGACCTCTTCGAGCGTTCCTGGGCTTCCCGCTCCGCAG___...GGCCTGCGGAGGACTGGCCCAGCAAGGTCCCAGGTCTTCCCTCTCCTCAGCGCCTAAGAGAGAGGCCCAGTGCGGGTGAGGAGTCGCGAGGAAGAGGCGGAAGGCGCCGGAAG|CCCATTGGACTGCCACTGTGTTGGGGCTGAGCACCCGGTCCCGGGCAGAATGGAGACGTCCGGAAGAGAACACTGACCTCCAGGTTGCG___CTTCTAGAACTGGAGCAGAAAGAAGGTGTGGCCCAGGGCCAGCCCCGCCTCCTCCCCGGGCGGAAGCTGTGTCAGTTGCCGGAAGTCGGCGTGAGGTGGGGCTTATGCGGCGG...GAGACCAGTGGACCAGAGCGGCCTCCGGAGAAGCCACGGAAACATGACAGCGGTGCGGCGGACTTGGAGCGGGTCACCGACTATGCAGAGGAGAAGGAGATCCAGAGTTCCAATCTGGAGACG___GCCATGTCTG	.	.	.
TALL048	PAK6	SERF2	+/+	+/+	15:40253289	15:43800495	splice-site	splice-site	deletion	downstream	upstream	2	0	0	24	132	low	.	.	duplicates(1)	CGGAGGGCGGGCCCGGCTCCCACGACCTCTTCGAGCGTTCCTGGGCTTCCCGCTCCGCAG___GCCTGCGGAGGACTGGCCCAGCAAGGTCCCAGGTCTTCCCTCTCCTCAGCGCCTAAGAGAGAGGCCCAGTGCGGGTGAGGAGTCGCGAGGAAGAGGCGGAAGGCGCCGGAAG|CTTCTAGAACTGGAGCAGAAAGAAGGTGTGGCCCAGGGCCAGCCCCGCCTCCTCC	.	.	.
TALL048	UVSSA	CTBP1	+/+	-/-	4:1366431	4:1241519	splice-site	splice-site	inversion	downstream	downstream	1	2	4	103	162	high	.	.	duplicates(1)	TGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCGCAGG___ACAGAAGCCCTGGGGGATGCGGAGGAAGATGAGGACGATGAGGACTTTGTGGAGGTCCCTGAGAAGGAGGGGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTATG|TAAGACTTTGACCCCGACGCAGGCTTCAGTGATTGCCGCGGATCAGAAGCC...AGATAAAAAGCTTTGAAAAGTCGAATTCATGGTCGTGGAAGCTGAGCCCATATTAAGAGATGTCAG___GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCATTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCCATCCTGAAGGACGTGGCCACTGTGGCCTTCTGCGACGC	out-of-frame	KAELELVLRKYKELDIEPEGGERRRTEALGDAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEY|vrl*	.
TALL048	UVSSA	CTBP1	+/+	-/-	4:1355245	4:1238337	splice-site	splice-site	inversion	downstream	downstream	0	2	4	100	458	high	.	.	.	CTCTGCTCAG___AGGGCCTGAAGGTGCAGGAGAACGAGGACAACCTTGCTCTCATCCACGCCGCCCGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAG___CGCTTCACCCGCGTCGGGACCCACGGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCGCAGG|GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCATTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCCATCCTGAAGGACGTGGCCACTGTGGCCTTCTGCGACGCGCAGTCCACGCAGGAGATCCATGAGAAG___GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGG	out-of-frame	LCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQRFTRVGTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGERRR|asdlrs*	.
TALL048	UVSSA	CTBP1	+/+	-/-	4:1366431	4:1228343	splice-site	splice-site	inversion	downstream	downstream	0	1	3	103	492	medium	.	.	duplicates(1)	GAGGACGATGAGGACTTTGTGGAGGTCCCTGAGAAGGAGGGGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTATG|GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGC	out-of-frame	EDDEDFVEVPEKEGYEPHIPDHLRPEY|gpergcggpdvphhhshqggpgevqspphhrpdwqwf*	.
TALL048	CTBP1	UVSSA	-/-	+/+	4:1228199	4:1348090	splice-site	splice-site	inversion	upstream	upstream	0	1	0	503	99	low	.	.	.	ACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG|ATATGGATCAGAAACTTTC...CAGGAGAACCCCGACTAAATCCTGAGAAAATGAAGGAACTGAAGAAAATTTGCAA___GTCTTCAGAGGAGCAGCTGAGCCGCGCCTACCGCCTGCTGATAGCACAGCTGACCCAGGAGCACGCCGAGATCCG	in-frame	HTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDL|dMDQKL	.
TALL048	NOC4L	FBRSL1	+/+	+/+	12:132145665	12:132548003	splice-site	splice-site	deletion	downstream	upstream	2	1	3	128	156	high	.	.	duplicates(2),mismappers(1),mismatches(1)	GGGGAGAGCTGTTTGTGGGCCAGCTGCCCTCTGAGGAGATGGTCATGACAG___GGTCCCAGGGAGCCACACGGAAGTACAAGGTGTGGATGAGACACCGCTATCACAGCTGCTGCAATCGCTTGGGAGAGCTCCTGGGCCACCCCTCCTTTCAGGTCAAG|TGTGACAGCGAGAGCGGCCCGGACGACAAG___GCATCCGTGGGCTCTGAGAAGCTCTTTGCGCCGGGAACCGATAAAG___GCCCAGCGCTTGAGAAGTCGGAGGCCAAGGCCGGGCCGGTGCCCAAGGTGTCAGGCCTGGAGCGCAGCCGCGAGCTCAGCGCCGAGAGCTTCCTGCCCACTGCCAG	in-frame	GELFVGQLPSEEMVMTGSQGATRKYKVWMRHRYHSCCNRLGELLGHPSFQVK|CDSESGPDDKASVGSEKLFAPGTDKGPALEKSEAKAGPVPKVSGLERSRELSAESFLPTA	.
TALL048	FBRSL1	NOC4L	+/+	+/+	12:132508350	12:132151258	splice-site	splice-site	duplication	downstream	upstream	1	0	0	200	216	low	.	.	.	CGGAAACCTGCCCCCCTGCGGAGCCCAGTGAGAACAGGCGGCCCCTGGAGGCAGGCAGCCCCGGGCAGGACCTCGAACCCGCCTGCGATGGGGCGAGAAAGGTCCCACTGCAGCCCTCCAAGCAG|GGAGTACCCTGACTTCTACCGGAAGCTCTACGGCCTCTTGGACCCCTCT	out-of-frame	ETCPPAEPSENRRPLEAGSPGQDLEPACDGARKVPLQPSKQ|gvp*	.
TALL048	PAK6	SERF2	+/+	+/+	15:40253289	15:43800060	splice-site	3'UTR	deletion	downstream	upstream	0	5	1	24	90	high	.	.	duplicates(1)	GGCCCGGCTCCCACGACCTCTTCGAGCGTTCCTGGGCTTCCCGCTCCGCAG___GCCTGCGGAGGACTGGCCCAGCAAGGTCCCAGGTCTTCCCTCTCCTCAGCGCCTAAGAGAGAGGCCCAGTGCGGGTGAGGAGTCGCGAGGAAGAGGCGGAAGGCGCCGGAAG|CCCATTGGACTGCCACTGTGTTGGGGCTGAGCACCCGGTCCCGGGCAGAATGGAGACGTCCGGAAGAGAACACTGACCTCCAGGTTGCG___CTTCTAGAACTGGAGCAGAAAGAAGGTGTGGCCCAGGGCCAGCCCCGCCTCCTCCCCGGGCGGAAGCTGTGTCAGTTGCCGGAAGTCGGCGTGAGGTGGGGCTTATGCGGCGG...GAGACCAGTGGACCAGAGCGGCCTCCGGAGAAGCCACGGAAACATGACAGCGGTGCGGCGGACTTGGAGCGGGTCACCGACTATGCAGAGGAGAAGGAGATCCAGAGTTCCAATCTGGAGACG___GCCATGTCTG	.	.	.
TALL048	PAK6	SERF2	+/+	+/+	15:40253289	15:43800495	splice-site	splice-site	deletion	downstream	upstream	2	0	0	24	132	low	.	.	duplicates(1)	CGGAGGGCGGGCCCGGCTCCCACGACCTCTTCGAGCGTTCCTGGGCTTCCCGCTCCGCAG___GCCTGCGGAGGACTGGCCCAGCAAGGTCCCAGGTCTTCCCTCTCCTCAGCGCCTAAGAGAGAGGCCCAGTGCGGGTGAGGAGTCGCGAGGAAGAGGCGGAAGGCGCCGGAAG|CTTCTAGAACTGGAGCAGAAAGAAGGTGTGGCCCAGGGCCAGCCCCGCCTCCTCC	.	.	.
TALL048	PAK6	HYPK	+/+	+/+	15:40253289	15:43800060	splice-site	UTR	deletion	downstream	upstream	2	1	0	24	90	high	.	.	.	CGGGCGCCCGCCCGGCGCGGGGCATTCGCGTCCCCGAGAGGGCGCAGCAGTGGGGCCTGCGAGCTGGGGCCGGGTGGCCGCGCCGGGTCGGAGTGTGGCTGGAGAGGGGCCGCCCCGGAAGCGGTGCTGCG...CGCGGAGCGGTTCCCAGCGCCTGGACGTCAGCCAGTCGCAACACCCGCGGGAACACTTGCTACATTTGCCATAATGCATTTCTGATCTGTTTCCGCGCAGGCCTGCGGAGGACTGGCCCAGCAAGGTCCCAGGTCTTCCCTCTCCTCAGCGCCTAAGAGAGAGGCCCAGTGCGGGTGAGGAGTCGCGAGGAAGAGGCGGAAGGCGCCGGAAG|CCCATTGGACTGCCACTGTGTTGGGGCTGAGCACCC...GAGACCAGTGGACCAGAGCGGCCTCCGGAGAAGCCACGGAAACATGACAGCGGTGCGGCGGACTTGGAGCGGGTCACCGACTATGCAGAGGAGAAGGAGATCCAGAGTTCCAATCTGGAGACG___GCCATGTCTG	.	.	.
TALL048	PAK6	HYPK	+/+	+/+	15:40253289	15:43800495	splice-site	splice-site	deletion	downstream	upstream	2	0	0	24	132	low	.	.	duplicates(1)	CGGAGGGCGGGCCCGGCTCCCACGACCTCTTCGAGCGTTCCTGGGCTTCCCGCTCCGCAG___GCCTGCGGAGGACTGGCCCAGCAAGGTCCCAGGTCTTCCCTCTCCTCAGCGCCTAAGAGAGAGGCCCAGTGCGGGTGAGGAGTCGCGAGGAAGAGGCGGAAGGCGCCGGAAG|CTTCTAGAACTGGAGCAGAAAGAAGGTGTGGCCCAGGGCCAGCCCCGCCTCCTCC	.	.	.
TALL048	CTDP1	NFATC1	+/+	+/+	18:79718016	18:79433579	splice-site	splice-site	duplication	downstream	upstream	0	1	2	162	112	high	.	.	duplicates(1)	GTTCTTCCCAAGGCCCAGCCTGGCCCCGAGGTTCGGATCTACGACTCCAACACGGGGAAGCTCATCAGGACGGGCGCCCGGGGGCCCCCAGCACCCTCCAGCTCCCTACCCATCCGCCAGGAGCCCTCTTCCTTCAG|CCCGACCCTGCCCGCCCTGGACTGGCAGCTGCCGTCCCACTCAGGCCCGTATGAGCTTCGGATTGAGGTGCAGCCCAAGTCCCACCACCGAGCCCACTACGAGACGGAGGGCAGCCGGGGGGCCGTGAAGGCGTCGGCCGGAG	in-frame	VLPKAQPGPEVRIYDSNTGKLIRTGARGPPAPSSSLPIRQEPSSFs|PTLPALDWQLPSHSGPYELRIEVQPKSHHRAHYETEGSRGAVKASAG	.
TALL048	UVSSA	GAK	+/+	-/-	4:1355245	4:904779	splice-site	splice-site	inversion	downstream	downstream	0	1	2	100	263	high	.	.	.	CCGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAG___CGCTTCACCCGCGTCGGGACCCACGGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCGCAGG|GGCAGCTGGTGGAATTTTTGAAGAAAATGGAATCTCGAGGCCCCCTTTCGTGCGACACGGTTCTGAAGATCTTCTACCAGACGTGCCGCGCCGTGCAGCACATGCACCGGCAGAAGCCGCCCATCATCCACAGGGACCTCAAG___GTTGAGAACTTGTTGCTTAGTAACCAAGGGACCATTAAGCTGTGTGACTTTGGCAGTGCCACGACCATCTCGCACTACCCTGACTACAGCTGGAGCGCCCAGAGGCGAGCCCTGGTGGAGGAAGAGGTGAGCTGAGTGGGGCCTATGCTGGGGGAAGCTGGC	out-of-frame	RDTLKLIRNKFLPAVCSWIQRFTRVGTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGERRR|gswwnf*	.
TALL048	UVSSA	GAK	+/+	-/-	4:1366431	4:904779	splice-site	splice-site	inversion	downstream	downstream	0	1	2	103	263	high	.	.	.	GGACGATGAGGtCTTTGTGGAGGTCCCTGAGAAGGAGGGGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTATG|GGCAGCTGGTGGAATTTTTGAAGAAAATGGAATCTCGAGGCCCCCTTTCGTGCGACACGGTTCTGAAGATCTTCTACCAGACGTGCCGCGCCGTGCAGCACATGCACCGGCAGAAGCCGCCCATCATCCACAGGGACCTCAAG___GTTGAGAACTTGTTGCTTAGTAACCAAGGGACCATTAAGCTGTGTGACTTTGGCAGTGCCACGACCATCTCGCACTACC	in-frame	DDEvFVEVPEKEGYEPHIPDHLRPEY|gQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHY	.
TALL048	UVSSA	GAK	+/+	-/-	4:1355245	4:870904	splice-site	splice-site	inversion	downstream	downstream	1	0	0	100	422	low	.	.	.	CGCACCCCCGTTTCGCAGCGCTTCACCCGCGTCGGGACCCACGGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCGCAGG|GTATGACCTGGACGCGTGTGACATTCAAGAAAAATACCCGGATTTATTTCAAGTGAACCTGGAAGTGGAGGTGGAGCCCAG	out-of-frame	rtpvsqRFTRVGTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGERRR|v*	.
TALL048	ATHL1	IFITM2	+/+	+/+	11:294196	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	23	35	11	15487	1438	medium	.	.	duplicates(8),low_entropy(4),mismappers(5),mismatches(3)	CAG___...CCCCAGGGCCCCGCCATGACCTGG___AGCATGTTTGCTGTGGGCTGGATGGAGCTGAAGGACGCAGTGCGGGCCCGGGGCCTCCTGGACAGGAGCTTTGCCAACATGGCTGAACCCTTCAAG___GTGTGGACGGAGAATGCAGACGGGTCAGGCGCTGTGAACTTCCTGACAGGCATGGGGGGCTTCCTGCAGGCGGTGGTCTTCGGGTGCACGGGGTTCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCTGCCTGGGCTTCATAGCATTCGCcTACTCCGTGAAG___TCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGG...___TCTAGGGACAGGAAGATGGTTGGCGACG...GGATCACGGTGGAgGTCGGGGGAGCAGGGTgGTGGGGCGCCCCC	in-frame	PQGPAMTWSMFAVGWMELKDAVRARGLLDRSFANMAEPFKVWTENADGSGAVNFLTGMGGFLQAVVFGCTGFs|GQPPNYEMLKEEQEVAMLGaPHNPAPPtSTVIHIRSETSVPDHVVWSLFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVT	.
TALL048	ATHL1	IFITM2	+/+	+/+	11:294478	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	12	13754	1438	low	.	.	duplicates(2),mismatches(1)	G___ACGGGTCAGGCGCTGTGAACTTCCTGACAGGCATGGGGGGCTTCCTGCAGGCGGTGGTCTTCGGGTGCACGGGGTTCAG___...CGGGTGTGACCTTTGACCCTGTGTGTCTGTCGGGGATCTCCAGAGTGAGCGTCTCCGGCATCTTCTACCAGGGGAACAAGCTCAACTTCTCTTTTTCCGAGGACTCCGTGACCGTGGAGGTCACAGCTCGAGCAGGGCCCTGGGCTCCTCACCTGGAGGCTGAGCTGTGGCCATCCCAGTCCCGGCTCTCCCTGTTGCCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTGCT...___CTCCGTGCCtGACCATGTCGTCTGGTCCCTGTTCAACACCCTCT	out-of-frame	GVTFDPVCLSGISRVSVSGIFYQGNKLNFSFSEDSVTVEVTARAGPWAPHLEAELWPSQSRLSLLP|aaslpttrcsrrsrkwlcwgrpttllprrpp*	.
TALL048	ATHL1	IFITM2	+/+	+/+	11:290075	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	11901	1438	low	.	.	duplicates(1),low_entropy(2),mismatches(3)	CAG...TGCCCAGTGACCCCCGTCTCTTGGCCACTGTGACCAACGCATACCTGGGCACACGAGTGTTTCACGACACGCTGCACGTGAGCGGCGTGTACAATGGGGCTGGCGGGGACACGCACCGGGCCATGCTGCCCAGCCCCCTCAACGTCCGGCTGGAGGCCCCTGCAGGGATGGGGGAGCAGCTGACCGAGACCTTCGCCCTGGACACCAACACAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAG	out-of-frame	PSDPRLLATVTNAYLGTRVFHDTLHVSGVYNGAGGDTHRAMLPSPLNVRLEAPAGMGEQLTETFALDTNT|aaslpttrcsrrsrkwlcwgrpttllprrpp*	.
TALL048	ATHL1	IFITM2	+/+	+/+	11:292677	11:308231	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	11444	1438	low	.	.	duplicates(1)	CTCCGGCCTAGAGGTTTGCCCTGAGGACATTTACGGAGTCCAGGAGGTCCACGTCAACGGGGCCGTGGTGTTGGCCTTCGAGCTGTACTACCATACCACCCAG|CGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGcGCCCCACAACCCTGCTCCCCCGAcGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTcGTCTGGTCCCTGTTCAACAC	out-of-frame	SGLEVCPEDIYGVQEVHVNGAVVLAFELYYHTTQ|rpasqlrdaqggagsgyaggapqpcspdvhrdphpqrdlra*	.
TALL048	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	16	32	7	167	71	medium	.	.	duplicates(12),low_entropy(3)	CTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG___GCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGG	.	.	.
TALL048	FP236383.8	bP-2189O9.2(105672),MIR3648-1(351)	+/+	./+	21:8391168	21:8986648	exon	intergenic	deletion	downstream	upstream	31	2	0	50	44	medium	.	.	duplicates(8),inconsistently_clipped(1),mismappers(3),mismatches(1)	GCGCGCCCGGCGCTCTGTCCGGCGCGTGACcCCCTCCGCCGCGAGTCGGCTCTCCGCCCGCTCCCGTGCCGAGTCGTGACCGGTGCCGACGACCGCGTTTGCGTGGCACGGGGTCGGGCCCGCCTGGCCCT...GGGCGCGCCGGTCTCCCGGAGCGGGACCGGGTCGGAGGATGGACGAGAATCACGAGCGACGGTGGTGGTGGCGTGTCGGGTTCGTGGCTGCGGTCGCTCCGGGGCCCCCGGTGGCGGGGCCCCGGGGCTCGCGAGGCGGTTCTCGGTGGGGGCCGAGGGCCGTCCGGCGTCCCAGGCGGGGCGCCGCGGGACCGCCCTCGTGTCTGTGGCGGTGGGATCCCGCGGCCGTGTTTTCCTGGTGGCCCGGCCGTGCCTGAG|GTTTCTCCCCGAGCCGCCGCCTCTGCGGaCTCCCGGGTGCCCTT___GCCCGTCTGTGCCCTCTTCCCCGCCCGCCGCCCGCCGATCCTCTTCTTCCCCCCGAGCGGCTCACCGGCTTCACGTCCGTTGGTGGCCCCGCCTGGGACCGAACCCGGC	.	.	.
TALL048	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	8	15	4	249	957	medium	.	.	duplicates(1),mismatches(2)	GGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGT...GCCAGGGCCAAGACTGGGACCAGGAAAG___CCAGGTCTAAAATTCAATGGCCCACCACCGCCACCGCCACCACCACCACCCCACTTACTATCATGCTGGCTGCCTCCATTTCCTTCTGGACCACCA___ATAATTCC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL048	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	74	957	low	.	.	duplicates(7),read_through(31)	CGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACC...___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAAT	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL048	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	1	6	11	42	161	medium	.	.	duplicates(5),low_entropy(6),mismatches(3)	CTGA___AAATGTGGTAAAGTACTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAAGACGTCATTACTCTACGGAGACATGTGGAAACAAAAGTTAGAGCTAAAATCCGTAAGAGGAAGGTGACAACGAAAATC...AATGACGAATGAAACTATTGTTCCTGTTTCACACAGAAGAAAACTGAGGTTAAAAGGG___GTTGGCACTCATCATGAGCCCCTGTTCTCATTCTGCAAATGGTGAAGCTCTCTATTGTCCTGACCCCACAGTTCCTGTCCCATGAC	.	.	.
TALL048	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528951	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	1	4	4	57	161	low	.	.	duplicates(3),low_entropy(1),mismatches(1)	CATTAAGCAGCTTTGAGTCTGGAAAATTTGTCAAATGTACCGAGCAATTAGAATTGTTACCAGGAGAAAATATCAATCTACTTGCTGGAGGGTCAAAAGAAAAAATAG___ACATGAAAAAACTGCTTCGTAACATGTGAAGTCCAGATCCAAGGGAACCTCAGAAATCCATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAAGACGTCATTACTCTACGGAGACATGTGGAAACAAAAGTTAGAGCTAAAATCCGTAAGAGGAAGGTGACAACGAAAATCAACCATCATGACAAAATCAATGGAAAGAGGAAGACCGCCAGAAAACAGTAAGATGTGCCTTGACACAAATACTGTTGTATGAACCAT	.	.	.
TALL048	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528417	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	5	70	161	low	.	.	duplicates(1),mismatches(1)	CAGAAATCCATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA___AAATGTGGTAAAGTACTTGAAGCAAACATCCCGC...ACAGTTTCTAACAGACTTTCAACAGAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAG	.	.	.
TALL048	MLLT11	GABPB2	+/+	+/+	1:151060553	1:151088190	splice-site	splice-site	deletion/read-through	downstream	upstream	5	8	1	446	46	medium	.	.	duplicates(3),mismatches(1)	CAG___GGGGAGAGTGAACTGACAGACTCAGTCACTGAAGAGGGAAAAGGAGTGAGAAGACAAAGCCGTCAAAGCCCCAACAGCTTTGTATTTCTCCAGCCCGGCGCAGACCCCGGAGCTCCCGAGGCACTCCCTCCATCTTTGGAACACGCCAGTAATTGATTGATAACAG|ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAACGTTGATGGCAAATGGCGCCCCATTCACCACAGACTGG___CTTGGAACATCACCCCTCCACCTTGCAGCTCAATATGGTCATTATTCC...___AATGGTGCAGATGTGAATGCCAAGGACATGCTGAAGATGACAGCTTTGCATTGGGCCACAGAGCGCCACCATCGAGATGTCGTAGAGTTACTTATCAAATATGGAGCTGATGTCCATGCTTTCAGC	.	.	.
TALL048	MGMT	RP11-109A6.3(44288),EBF3(21560)	+/+	./+	10:129759341	10:129813723	splice-site	intergenic	deletion/read-through	downstream	upstream	6	3	2	244	10	medium	.	.	duplicates(1)	CGACGCCCGCAGGTCCTCGCGGTGCGCACCGTTTGCGACTTG___GTACTTGGAAAAATGGACAAGGATTGTGAAATGAAACGCACCACACTGGACAGCCCTTTGGGGAAGCTGGAGCTGTCTGGTTGTGAGCAGGGTCTGCACGAAATAAAGCTCCTGGGC...GCAGCTGA___TGCCGTGGAGGTCCCAGCCCCCGCTGCGGTTCTCGGAGGTCCGGAGCCCCTGATGCAGTGCACAGCCTGGCTGAATGCCTATTTCCACCAGCCCGAGGCTATCGAAGAGTTCCCCGTGCCGGCTCTTCACCATCCCGTTTTCCAGCAAG___AGTCGTTCACCAGACAGGTGTTATGGAAGCTGCTGAAGGTTGTGAAATTCGGAGAAGTGATTTCTTACCAGCAATTAGCAGCCCTGGCAGGCAACCCCAAAGCCGCGCGAGCAGTGGGAGGAGCAATGAGAGGCAATCCT|GTCTTGGAAGAAACCATCACACCGAGGTCATTTCTGAGCACAGCGTGGAAGCTCCTATGTTTGCAGGaAg___GTGCCATCTGCAAACCAGGCA...TTgCAGATTGATTCCTTGGAGTGGAATTAGTAAAAAGGATATGAATATTTTTAGTCTCTTGATATGTcAGACTGATTTCCAGAAGGCTTGTACCAATTTACTCTTCTAC...CATTATTTTAATTTGATATGTATTTTTAAATGAGGTTGAATATAATTTCCCAAGCTTATTGATCACTTTTATTGTTCCCTTGTGAATGGACTGTAAATTTGCCTCTTTTTTCTTTAGGGTGTTCATTGAGTG	out-of-frame	AADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNP|vleetitprsflstawkllclqegaickpg	.
TALL048	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	6	2	60	44	medium	.	.	duplicates(6),low_entropy(6),mismappers(1)	GCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG	.	.	.
TALL048	AC114730.2	RTP5	+/+	+/+	2:241844478	2:241871714	splice-site	splice-site	deletion/read-through	downstream	upstream	4	2	4	67	245	medium	.	.	mismatches(1)	CCCGGGGCCAGCCGGGGACGGAAAAAGTGAGTGCGCGGCGGCGCGGGGCGGCCTGACGGGAAGGCGGGAGGCGAAGTGCTGACTGCGCCGCGGTCTCTCAGCCGCCAACACACCGCGGACGCCCGGGGACAGCGACCGCTTCCTCCCTCCCCGCCCGCCTTGTCTCTTTTT|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGTGCAGGCTGTGCCCCGCACCCGGGGACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCTGGTCTTGCACATCCTGCAGGACTGCTACGGGGATaGCCC...CCATCACCTTCCCCTTCATCTTTACTGATGTCAAGGATGCCGTTGCTGAGGTGGCTGAAGGCAACGGGAAGGAAGGAGGCGGCCAGGGCCTCGTCCCAGTGGGTCACGACGCCCTGCCAGAGACCAATGCTGG	.	.	.
TALL048	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	5	2	0	171	27	medium	.	.	mismappers(1)	GAAAGCGGTCGTGGCCAGGACTGGCGCAGCTGCCGTTTCAGGCGAGGGGCGCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL048	C5orf56	RAD50	+/+	+/+	5:132449689	5:132556332	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	1	4	171	12	medium	.	.	duplicates(1),low_entropy(2),mismappers(2)	GCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTG...AGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ATATCTATTGCTGGGAGCACTGATCGGAATGGATTACCTCTACATTCTTCATATTTGCAGACTGCTTTTAGTTTTAGTTCCCAGACTTTTGGTCTTAAAGACGCCTTTACACTAAAAAATTACGGGGGACCTCAAAGAGCGT___ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAGATTCGTCTGCAATTTCG...GTGCTAAATAATGTCATTTTCTGTCATCAAGAAGATTCTAATTGGCCTTTAAGTGAAGGAAAGGCTTTGAAGCAAAAGTTTGATGAGATTTTTTCAGCAACAAG___ATACATTAAAGCCTTAGAAACACTTCG	out-of-frame	FVAYWRKTHQ|diycweh*	.
TALL048	MRPL23	CD81	+/+	+/+	11:1952855	11:2390412	splice-site	splice-site	deletion	downstream	upstream	3	3	0	451	992	medium	.	.	duplicates(1),low_entropy(1),mismatches(1)	CGCGGAATGTGGT___GTACCCCCTGTACCGGCTGGGTGGCCCACAACTTCGGGTGTTCCGAACCAACTTCTTCATTCAGCTGGTGCGGCCCGGTGTGGCCCAGCCCGAGGACACCGTGCAGTTCCGGATCCCCATGGA___...AGGAATTACCTCGAGGGCATCTATAACGTGCCCGTGGCTGCTGTGCGGACACGGGTGCAGCATG___GCTCTAACAAGAGAAGAGATCACAGAAACGTGAGGATCAAGAAGCCGGACTACAAGGTCGCCTACGTGCAGCTG|CTGGCTGGAGGCGTGATCCTGGGTGTGGCCCTGTGGCTCCGCCATGACCCGCAGACCACCAACCTCCTGTATCTGGAGCTGGGAGACAAGCCCGCGCCCAACACCTTCTATGTAG___GCATCTACATCCTCATCGCTGTGGGCGCTGTCATGATGTTCGTTGGCTTCCTGGGCTGCTACGGGGCCATCCAGGAATCCCAGTGCCTGCTGGGGACG___TTCTTCACCTGCCTGGTCATCCTGTTTGCCTGTGAGGTGGCCGCCGGCATCTGGGGCTTTGTCAACAAGGACCAG___ATCGCCAAGGATGTGAAGC	in-frame	RNYLEGIYNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQL|LAGGVILGVALWLRHDPQTTNLLYLELGDKPAPNTFYVGIYILIAVGAVMMFVGFLGCYGAIQESQCLLGTFFTCLVILFACEVAAGIWGFVNKDQIAKDVK	.
TALL048	RP11-325K4.3	DOK4(3500),CCDC102A(21351)	+/+	./+	16:56940401	16:57490827	splice-site	intergenic	deletion	downstream	upstream	5	0	0	236	9	medium	.	.	duplicates(1),low_entropy(1),mismappers(13),mismatches(7)	GAAAACCAGCCTGCCAATCAGAATGCTGCTCCTCAAGTGGTTGTTAATCCTGGAGCCAATCAAAATTTGCGGATGAATGCACAAGGTGGCCCTATTGTGGAAGAAGATGATGAAATAAATCGAGATTGGTTGGATTGGACCTATTCAGCAGCTACATTTTCTGTTTTTCTCAGTATCCTCTACTTCTACTCCTCCCTGAGCAGATTCCTCATGGTCATGGGGGCCACCGTTGTTATGTACCTGTAAGCAGATGGTTTCTCTAATATAAATTACACTACACTGTGTTCACACTAAGCAGATTTTGCTCTTTTTGTTTCTTGTTTTTTTTGAGATGGAGTCTCGCTCTGTCATTCAGGCTGGAGTACAATGGCACAATCACTGCAATCTCCGCTTCCCAG|GTTCGAGCGATTCTCCTGCCTCAGCCTCC	.	.	.
TALL048	STIL	RP1-18D14.7	-/-	+/-	1:47314036	1:47229771	splice-site	exon	deletion/read-through/5'-5'	upstream	downstream	0	2	3	95	12	medium	.	.	duplicates(1)	CGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GCCCGGGACTATCCCTTCGCGGTGTAGCGGCAGCCGGAGACCTGGCTGAGGAGGCAACCGCGTAGACACCTCCCTGCTTAGAAAACAAACACTGAACCAGA	.	.	.
TALL048	MTAP	UBA52P6	+/+	+/+	9:21818202	9:22012128	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	1	2	101	9	medium	.	.	.	AATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|CGAGGCAGCCGAGCTGCAGACACAGAGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACAAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACGTCCAGAAACAGCCCACCCCGCACCTGGTGCTGC	out-of-frame	IGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDs|eaaelqtqrcrsl*	.
TALL048	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	1	7	92	medium	.	.	.	GCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA___GAAGGAAAATACATGTAC...AAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCT	.	.	.
TALL048	ZNF37A	RP11-508N22.12(2333),RP11-508N22.13(3236)	+/+	./+	10:38096632	10:38146732	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	2	58	2	medium	.	.	.	TGTGAAGGCATCATGCGGAGGGAAGAGCTTAGCAGCCAAGTGGAGGACAGCACCCTCCATGCCTGGATTCGTTACTCGCTCGTTCTAGATGCTGAGCTGCTGGCGCACTGCAGCACAACTAGAGATGTACGGATGCCCCCATCTTGATCTTACAGAATCAGAGGTACAGCCGCGAGAAAG___AGTCAAGAACAGACAGAGTCGCTTGAGGACTCAGGAGGGTGTTTGCTGCGTTGACAACAGA___CTACACCCTCACAGTTTGCTCTGCTCTTCCAACACCAGTGGAAGATGATCACATCCCAG|GCTCCACAAGGCTGACTTCAGGACCTGGGCCTGCATGGATTTGTGCCG...GAGGAATGAAGACAAAGACAAAGACACAGAAATAAAGTGCAAAGTGGGAATCGGGGATAACAGCCTTCAGAGATGAGAGCCACAAACAGAGTTTGACCCACATGTTTATTGACAGCAAGCCAGTGATAAGCATTGTTTCTATAGGTTATAGATTAGCTAAAAGCATTCCTTACGGGAAACAAAGCATTTTTAGCGAGGA	out-of-frame	MITSQ|apqg*	.
TALL048	SMCR8	SMCR8	+/+	+/+	17:18325805	17:18318660	3'UTR	intron	duplication	downstream	upstream	2	0	2	169	15	medium	.	.	duplicates(1)	CACACCCTCAAGGGTGGTTCAGAAGGTCCTGAAACCTAAGGCAAAAGGCTGCTGGGGCATGAACAGAACAGACCGTCTCAGGGGCAGCCATGTAAGTGGCAAGCAGGGCTGGTCTCCCTCAAGGTGGTTCTTC...TTTATATTTGGGTTAAAAACTAACTTTTCAATGTGGCAGTTTCAAAGGATTACTTGATGCAAAGTATGTTTCCTTTCAAAGGGATCTTGACGTGGTACCAGGACTGAGTCcTGATTTGGGCAGAGGCAGTTAACACTGGGAAGCCCTGCCCCTCCCTATGCCCCCTTCACTCCGGGGAACTGAAACCTACTCTGAGTCTCACATCTCTAAACCTCAGTGCTGAGACCTATGCAGTGGGACTAATCTCATCAAGAATTTTCAGTTGAGGCCGGGCGCAGTGGCTCACGCCTGTAA|TCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCGGAAAGTTTTTAAAATCATGGATTCCTGAGTCACAAGCCCTCGAGGTTCTGATTCGGTTGGTGTGAGGTAAGACATGGAATTTATCTGTCGC	.	.	.
TALL048	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1065478	splice-site	splice-site	inversion	downstream	downstream	0	2	2	120	250	medium	.	.	duplicates(1)	CGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|AACATACGGTCCCTAATGAGCACAGAGAAGACCAAGGGCTTCTGCCAGCTGGTGGTCTCGTCCAGCCTGCGGGATGGCATGTCCCACCTGATCCAGTCGGCCGGCCTGGGCGGCCTGAAGCACAACACGGTGCTCATGGCCTGGCCCGCATCCTGGAAGCAGGAGGACAACCCCTTCTCCTGGAAGAACTTTGTGG___ACACCGTCCGCGACACCACCGCCGCGCACCAGGCTCTGCTGGTGGCC	in-frame	RKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|NIRSLMSTEKTKGFCQLVVSSSLRDGMSHLIQSAGLGGLKHNTVLMAWPASWKQEDNPFSWKNFVDTVRDTTAAHQALLV	.
TALL048	CBFA2T3	ACSF3	-/-	+/+	16:88901504	16:89112092	splice-site	splice-site	inversion	upstream	upstream	0	1	2	326	322	medium	.	.	duplicates(1)	AAGGCCTCAGCGATGCCGGACTCCCCAGCGGAGGTGAAGACGCAGCCCCGGTCCACACCCCCCAGCATGCCGCCCCCACCGCCTGCCGCATCCCAGGGGGCCACACGCCCCCCCTCCTTCACGCCACACACAC|GTTTGGGAAAAGTTCTTAAGTTCTGAAACGCCGCGGATCAATGTCTTTATGGCAGTGCCTACAATATACACCAAGCTGATGGAGTACTACGACAGGCATTTTACCCAGCCGC...GCAGTTTGTGAAGAAAAAATTAG___GTTCCGTGGGGACCCCACTGCCTGGAGTACAGGTGCGCATTGTCTCAGAAAACCCACAGAGGGAAGCCTGCTCCTACACCATCCACGCAGAGGGAGACGAGAGGGGGA	out-of-frame	KASAMPDSPAEVKTQPRSTPPSMPPPPPAASQGATRPPSFTPHT|rlgkvlkf*	.
TALL048	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89120801	splice-site	splice-site	inversion	upstream	upstream	0	1	1	324	546	medium	.	.	duplicates(1)	CGCGGGGTGGCCGGAGCCGAGTCCCCGGCATGGCCCAGGCGGCCGCCCCGCGCGCCCCAGCCCCGCCGCGCGCCTGAGCCCGGTGCGGCGCCAGAAGACAGCGCGCAGCCGCCCCTGAGTCGTGGAGGCGGGG...AGCGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GTTCCGTGGGGACCCCACTGCCTGGAGTACAGGTGCGCATTGTCTCAGAAAACCCACAGAGGGAAGCCTGCTCCTACACCATCCACGCAGAGGGAGACGAGAGGGGGACCAAG___GTGACCCCAGGGTTTGAAGAAAAGGAGGGGGAGCTGCTGGTGAGGGGACCCTCCGTGTTTCGAG	.	.	.
TALL048	ACSF3	CBFA2T3	+/+	-/-	16:89133262	16:88892485	splice-site	splice-site	inversion	downstream	downstream	1	0	0	821	384	low	.	.	.	TGAGTTCAGCCCTCAGCAG___GTGACCCCAGGGTTTGAAGAAAAGGAGGGGGAGCTGCTGGTGAGGGGACCCTCCGTGTTTCGAGAATACTGGAATAAACCAGAAGAAACTAAGAGTGCATTCACCCTGGATGGCTGGTTTAAGACAG|TGATGAACGGCAGCAGCCACTCACCAACAGCCATCAATGGTGCACCGTGCACACCCAACGGCTTCAGCAATGGCCCGGCCACCTCGTCCACAGCCTCCTT	in-frame	EFSPQQVTPGfeekegellvrgpsvfreywnkpeetksaftldgwfkt|vMNGSSHSPTAINGAPCTPNGFSNGPATSSTAS	.
TALL048	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89145267	splice-site	splice-site	inversion	upstream	upstream	1	0	0	324	861	low	.	.	low_entropy(1)	CCGGCGCGGGCCGCGGAGGCCGGAGACCGCCCCGGGCGGGGTGCGCGCTTTGTTCCCGCGCGGGGTGGCCGGAGCCGAGTCCCCGGCATGGCCCAGGCGGCCGCCCCGCGCGCCCCtGCCCCGCCGCGCGCCT...AGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GGGACACCGTGGTGTTTAAGGATGGCCAGTACTGGATCCGAGGCCGGACCTCAGTGGACATCATCAAGACTGGAGGCTACAAGGTCAGCGC...GCCAG___AAATGTCCTGGCCCCGTACGCGGTGCCCTtGGAGCTGGTGCTGGTGGAGGAGATCCCGCGGAACCAGtTGGGCAAGATTGACAAGAAGGCGCTCATCAGGCACTTCCACC	.	.	.
TALL048	PAK6	SERINC4	+/+	-/+	15:40253289	15:43800060	splice-site	5'UTR	deletion/5'-5'	downstream	upstream	2	0	0	24	90	medium	.	.	.	CGGGCGCCCGCCCGGCGCGGGGCATTCGCGTCCCCGAGAGGGCGCAGCAGTGGGGCCTGCGAGCTGGGGCCGGGTGGCCGCGCCGGGTCGGAGTGTGGCTGGAGAGGGGCCGCCCCGGAAGCGGTGCTGCG...CGCGGAGCGGTTCCCAGCGCCTGGACGTCAGCCAGTCGCAACACCCGCGGGAACACTTGCTACATTTGCCATAATGCATTTCTGATCTGTTTCCGCGCAGGCCTGCGGAGGACTGGCCCAGCAAGGTCCCAGGTCTTCCCTCTCCTCAGCGCCTAAGAGAGAGGCCCAGTGCGGGTGAGGAGTCGCGAGGAAGAGGCGGAAGGCGCCGGAAG|CCCATTGGACTGCCACTGTGTTGGGGCTGAGCACCC	.	.	.
TALL048	MAEA	CTBP1	+/+	-/-	4:1315600	4:1238337	splice-site	splice-site	inversion	downstream	downstream	0	1	1	344	458	medium	.	.	.	CGGGAGACCAGCCACGTCACCATGGTGGTGGCCGAGCTGGAGAAGACGTTGAGCGGCTcCCCCGCCGTGGACTCCGTGGTCAGCCTGCTGGACGGCGTGGTGGAGAAGCTCAGCGTCCTCAAGAGGAAG___GCGG...GCGTTGCGGCTACTACAACACGGCTGTCAAGCTGGCGCGCCAGAGCGGCATCGAG|GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCATTGCTGGATGGCCGGGACTGCAC...CACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG___GCATTGCCGTCTGCAACGTGCCCGCGGCGTCTGTG	out-of-frame	RCGYYNTAVKLARQSGIE|asdlrs*	.
TALL048	GRAMD4	GRAMD4	+/+	+/+	22:46674750	22:46626751	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	4	11	0	610	198	low	.	.	duplicates(2)	GCTGGGTACTTCCAGTGGAAAGTGTGACAGGCGGGCCTTCTCCCATTAGTGTGCGAGAATGGCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTGCTCTACGTCACGGAGAA|GGAACCCGAGCGTCATGTTAGGGTGAAGCAGAGGACCTCAGTGCTGAACATGCTAAGGAGGTTGGACAAAATCAGGTTCAGAGGTCACAAGAGAGATGACTTCCTCGATCTAGCGGAGTCTCCAAATGCCTCGGACACCGAATGCAGCGACGAAATCCCCCTGAAGGTACCGCGGACCTCGCCCCGGGACAGCGAGGAGCTGAGGGACCCT___GCTGGTCCAGGGACCCTCATCATGGCCACAGGAGTCC	in-frame	MPTDYIRNGVLYVTEk|eperhvrvkqrtsvlnMLRRLDKIRFRGHKRDDFLDLAESPNASDTECSDEIPLKVPRTSPRDSEELRDPAGPGTLIMATGV	.
TALL048	CBFA2T3	PIEZO1	-/-	-/-	16:88941020	16:88749479	splice-site	splice-site	deletion/read-through	upstream	downstream	2	7	0	324	99	low	.	.	duplicates(2),low_entropy(1),mismappers(1)	CCTGAGTCGTGGAGGCGGGGACCAAGCTGGAAGGAGCAGCGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCAGCCTGCTCTTCCTGGTGGCCCATCTCGCCCTCCAGATCTGCCTGCATAcTGTGCCCCGCCTGGACCAGCTCCTGGGACCCAGCT___GCAGCCGCTGGGAGACCCTCTCGCGACACATAGGGGTCACAAG___GCTGGACCTGAAGGACATCCCCAACGCCATCCGGCTGGTGGCCCCTGACCTGGG	.	.	.
TALL048	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	2	88	280	low	.	.	duplicates(4),low_entropy(2),mismatches(1)	CTGGGCCTTGgGTACTGGGGGGaGGAGGGCaCATTTGACTGCAGGAATTGCTCAAGCACATAAGCACCTTGAAGTGTGTTACTAAGATACAAGAAACAcGTTTGCTTTTGCCTATTCCAGCATtGTGT...ATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAAGGACAAGATGGAGGGC	.	.	.
TALL048	ZNF577	AC006272.1	-/-	-/-	19:51877282	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	5	0	89	30	low	.	.	duplicates(1),low_entropy(1),mismappers(8)	TTCCAGTGGTAGCTTGACCTGAGATGATACCTGACCACCACTTCTGGGAAGGCCCAGAATAGACAGAAGAGAGAGAACATACTAGAGTTGCTAGCCCCTAAGAGTTGAACGAAATGGGCAAGGCCCAG___CTGA...AGAGAGCAAGGCAGTTCTTCAGGGGAG___GGGTCATTGTCATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAA?CTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTgCAACAACCTAGTGTCAtTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGT?GGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCG	out-of-frame	REQGSSSGEGSLSFEDVAVGFTREEWQFLDQSQKVLYKEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICP|gfiiiq*	.
TALL048	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	1	4	3	19	13	low	.	.	low_entropy(1)	CCTTGCTTCTCCTGCAGACAACAAGGTTTCCAGCATGATTATTGCAATGACCAATGGAACAATGATGAAACATCCATTTTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___TGTTTCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAGGACTGCAAGTATATCGTGGTGG	.	.	.
TALL048	IKBKG	CTAG1A	+/+	+/+	X:154556376	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	1	252	16	low	.	.	.	CACCTCTGGAAGAGCCAACTGTGTGAGATGGTGCAGCCCAGTGGTGGCCCGGCAGCAGATCAGGACGTACTGGGCGAAGAGTCTCCTCTGGGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAG___CTCCCCTCCACTGTCCCCTCTGCCACCAGATGCCATCCGGC...CGGGAGCGCTGCGAGGAGCTTCTGCATTTCCAAGCCAGCCAGAGGGAGGAGAAGGAGTTCCTCATGTGCAAGTTCCAGGAGGCCAGGAAACTGGTGGAGAGACTCGGCCTGGAGAAGCTCGATCTGAAGAGGCAGAAGGAGCAGGCTCTGCGGGAGGTGGAGCACCTGAAGAGATGCCAGCAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTCATTGTGGGGGCCTGATTGTTTGTCGCTGGAGGAGGACGGC...GCTGAGCCAAAAACACGGGCAGAAAGCACTGCGTGATCC	out-of-frame	RERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQ|ptdccrppptaalhqllspaafpvdvdhavlsarvfgsaslraealspawrpflghassprewsqhewpvhcgglivcrwrrt	.
TALL048	IKBKG	CTAG1A	+/+	+/+	X:154564020	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	2	284	16	low	.	.	duplicates(3),low_entropy(1)	CGGACTTCCAGGCTGAGAGGCAGGCCCGGGAGAAGCTGGCCGAGAAGAAGGAGCTCCTGCAGGAGCAGCTGGAGCAGCTGCAGAGGGAGTACAGCAAACTGAAGGCCAGCTGTCAGGAGTCGGCCAG___GATCGAGGACATGAGGAAGCGGCATGTCGAGGTCTCCCAGGCCCCCTTGCCCCCCGCCCCTG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTCATTGTGGGGGCCTGATTGTTTGTCGCTGGAGGAGGACGGC	out-of-frame	DFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRHVEVSQAPLPPAP|ad*	.
TALL048	IKBKG	CTAG1A	+/+	+/+	X:154552189	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	269	16	low	.	.	duplicates(2),low_entropy(1)	CCCGGCAGCAGATCAGGACGTACTGGGCGAAGAGTCTCCTCTGGGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTG___GC	out-of-frame	PAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQELR|ad*	.
TALL048	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40875606	3'UTR	intron	deletion/read-through	downstream	upstream	1	2	3	93	7	low	.	.	duplicates(1),low_entropy(1),mismappers(2),mismatches(3)	CTCTGCCCCAACATGCCCTCTGCATGTGACCGTCATGCCCTGGATGGAGCCACTCCTGGCTCACCCCACCTGCACTGCACTGTCCCCAGAGAGCCACCCCTCCACCCACTCAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|ATACAGGATCTCACTATATTGACCAGGCTGGTTTTGAACTCCTGACCTCAAGCAATCCTCCTGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCATCTGGCCAGATGATGACCTTGACCTCTGATTGCTGCCACATAACTGGAACTCAGAGACCTTCTTGCACATCTGTGGAAAGGGGAGTTTGCTTTGAACTGCATTTCCTCACCAGCGTCACCCATTCCTTAAGAGTCAGGTTGATAAACGAGTCAATGCTGAGCCCAAACCAGGCAGG...AGGACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGgCCATCCAGCTCTAGCTAAGCCATCAG	.	.	.
TALL048	CHFR	ANKLE2	-/-	-/-	12:132836707	12:132755133	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	3	1	132	321	low	.	.	mismatches(1)	CTGAAATGTTTGGCCCCAGGGCAGCATCTACTGATCACTGACCAGTTGGCTACTGAACGGTGAAGGTCTGATGAGCTGATGAGCCGTCCCCTGGGCTTGAAATCTTTCCCGCGGCACAAACAGGCGCCCCTTCCTCTGTCGCTCACTTTTCACGGTTGTCTCCTTCTGAGGCG|GTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGGATTGAAATGTGGACCCATTACATCAACTACAAGGTTCATTTTTGAGAAAAAATTGGCTCAGGCTTTACTGGAGCAAGGAGGAAGGCTGTCTT	.	.	.
TALL048	ZHX1-C8orf76	RP11-539E17.5	-/-	-/-	8:123237798	8:123182152	splice-site	splice-site	deletion/read-through	upstream	downstream	2	3	1	320	10	low	.	.	duplicates(1),low_entropy(1)	CGAGGAGAGGCCGGAGCGGCGGTCAGGACCGCCCGCGTCCTACTGCGCCAAGCTCTGCGAGCCGCAG___TGGTTTTATGAAGAAACAGAAAGCAGTGATGATGTTGAAGTGCTGACTCTCAAGAAATTCAAAGGAGACCTGGCCTACAGACGACAAGAGTATCAG___AAAGCACTGCAGGAGTATTCCAGTATCTCTGAAAAATTGTCATCAACCAATTTTGCCATGAAAAGGGATGTCCAGGAAGGTCAGGCTCGGTGTCTGGCTCACCTGGGTAGGCATATGGAGGCGCTGGAGATTGCTGCAAACTTG|AGACCGCAGAGGTTCCAGTTCTCAGGCCAACGCTTCCTCGCTGGAAGTGGCTTCTTGGAACACTGTCTGGAGAACGAGCCGAGGCTGCCGGCGGCCCACGAGCCCAGGGGACCAGTCAGTGTTGGCGCTGGAGTGAG	out-of-frame	eerperrsgppasycaklcepqWFYEETESSDDVEVLTLKKFKGDLAYRRQEYQKALQEYSSISEKLSSTNFAMKRDVQEGQARCLAHLGRHMEALEIAANL|rpqrfqfsgqrflagsgflehcleneprlpaaheprgpvsvgagv	.
TALL048	C8orf76	RP11-539E17.5	-/-	-/-	8:123237798	8:123182152	splice-site	splice-site	deletion/read-through	upstream	downstream	2	3	1	320	10	low	.	.	duplicates(1),low_entropy(1)	CGAGGAGAGGCCGGAGCGGCGGTCAGGACCGCCCGCGTCCTACTGCGCCAAGCTCTGCGAGCCGCAG___TGGTTTTATGAAGAAACAGAAAGCAGTGATGATGTTGAAGTGCTGACTCTCAAGAAATTCAAAGGAGACCTGGCCTACAGACGACAAGAGTATCAG___AAAGCACTGCAGGAGTATTCCAGTATCTCTGAAAAATTGTCATCAACCAATTTTGCCATGAAAAGGGATGTCCAGGAAGGTCAGGCTCGGTGTCTGGCTCACCTGGGTAGGCATATGGAGGCGCTGGAGATTGCTGCAAACTTG|AGACCGCAGAGGTTCCAGTTCTCAGGCCAACGCTTCCTCGCTGGAAGTGGCTTCTTGGAACACTGTCTGGAGAACGAGCCGAGGCTGCCGGCGGCCCACGAGCCCAGGGGACCAGTCAGTGTTGGCGCTGGAGTGAG	out-of-frame	EERPERRSGPPASYCAKLCEPQWFYEETESSDDVEVLTLKKFKGDLAYRRQEYQKALQEYSSISEKLSSTNFAMKRDVQEGQARCLAHLGRHMEALEIAANL|rpqrfqfsgqrflagsgflehcleneprlpaaheprgpvsvgagv	.
TALL048	LINC01097	RAB28	-/-	-/-	4:13527537	4:13479526	exon	splice-site	deletion/read-through	upstream	downstream	2	4	0	29	211	low	.	.	.	GGATCACACGCGGTCGCTGCCAAAGCCTCCATTTCGGTTCTGACCCAGTGACTTTGGGGACGCCCAGGGAGGAGATGTGGAGAGGATGTGGCCAAGGTGAACCAGCCAGT|ACCTCCTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGATAACATTGCCAG___GAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGCAGACAATAGGAGGCAAAATGTTGGATAAATATATCTATGGAGCACAG___GGAGTCC	.	.	.
TALL048	CD82	RP11-244C20.2(5802),RP11-45A12.1(32141)	+/+	./+	11:44615373	11:44662722	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	2	472	20	low	.	.	duplicates(2),low_entropy(1),mismatches(2)	TGGaGGCCTATGTCTTCATCGGCGTGGGGGCAGTCACTATGCTCATGGGCTTCCTGGGCTGCATCGGCGCCGTCAACGAGGTCCGCTGCCTGCTGGGGCTG___TACTTTGCTTTCCTGCTCCTGATCCTCATTGCCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGCAAG___CTGAAGCAGGAaATGGGCGGCATCGTGACTGAGCTCATTCGAGACTACAACAGCAGTCGCGAGGACAGCCTGCAGGATGCCTGGGACTACGTGCAGGCTCAG|ACCAGGCTCCTAGATGTTGGGGACTGAACCCTGGCTCCGTTCCACCTGGCTTGTCACTACGTTGTCATTCACAAACGGTGAGCTAATCACAGAAGCAACCTGTAGGCCAGTGATGAGCATGAAGTGAGATAAAAGCCTGTAGGTTTCTCAGTGTCTGATGCACCTCTTAATATTGGAATTAAGATAAACATCATGGCcCCCTCcCCCTCcCCCTCcCCCTCcCCCTCcCCC...GGTGAAAGGAACTCATTTCCAGATACAACTTTGGACTTTGGACTTGGGACTTCTGATTGAGTTGATGCTGAAATGAGTTAAAACTTTGAGGGACTGTTGGGAAGCCATGATTGTATTTTGCAATATGAGAAGG	out-of-frame	eAYVFIGVGAVTMLMGFLGCIGAVNEVRCLLGLYFAFLLLILIAQVTAGALFYFNMGKLKQEMGGIVTELIRDYNSSREDSLQDAWDYVQAQ|trlldvgd*	.
TALL048	PTPRCAP	PPP1CA	-/-	-/-	11:67437617	11:67419597	splice-site	splice-site	deletion/read-through	upstream	downstream	0	6	0	449	114	low	.	.	duplicates(2)	GCCAGAGCTGGAGGTGGGTGCCCGGCACGGAGGGGCCTGCGGACCAATG|CTTCTCCAGCAGCGCCAGCACTGTGTCCACCACTGCACCCAGCTCTGCCCGCGGGTGCAGACGCCATGCCTGCCGCCCCCGCCAGCGCCAGCCACTGAGCTTCACAGCTACCTGCAGCAAGGAGGGGAAAGGGGCCTCCTGGACACCACCCCAG___TGCAGGGCTCGCGGCCTGGCAAGAATGTACAGCTGACAGAGAACGAGATCCGC	in-frame	M|LLQQRQHCVHHCTQLCPRVQTPCLPPPPAPATELHSYLQQGGERGLLDTTPVQGSRPGKNVQLTENEI	.
TALL048	RTP3(3888),LRRC2(10586)	LTF	./-	-/-	3:46504837	3:46459819	intergenic	splice-site	deletion/read-through	upstream	downstream	0	4	1	10	25	low	.	.	.	CTGTGAAGAGGTGCCTTCTGCCATGATTGTGTTCCTGAGGCCTCTCCAGCCATGTGGAACT|GACTGTGTCTGGCTGGCCGTAGG[aga]AGGAGTGTTCAGTGGTGCGCCGTATCCCAACCCGAGGCCACAAAATGCTTCCAATGGCA...GGAATATGAGAAgAGTGCGTGGCCCTCCTGTCAGCTGCATAAAGAGAGACTCCCCCATCCAGTGTATCCAGGCCATTGCG___GAAAACAGGGCCGATGCTGTGACCCTTGATGGTGGTTTCATATACGAGGCAGGCCTGGCCCCCTACAAACTGCGACCTGTAGCGGCGGAAGTCTACGGGACCGAAAGAC___AGCCACGAACTCACTATTATGCCGTGGCTGTGGTGAAGAAGGGCGGCAGCTTTCAGCTGAACGAACTGCAAGGTCTGAAGTCC	.	.	.
TALL048	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69079020	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	1	79	16	low	.	.	duplicates(1),mismappers(1),mismatches(1)	CTTCGGCCACTACTACTTTGACTACCTGGGGAACCTCATCGCCCTGGCAAACCTGGTGTCCATTTGC___GTGTTCCTGGTGCTGGATGCAGATGTGCTGCCTGCTGAGCGTGATGACTTCATCCTGGGG___ATTCTCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGG	out-of-frame	FGHYYFDYLGNLIALANLVSICVFLVLDADVLPAERDDFILGILNCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLL|*	.
TALL048	ST6GALNAC4	RP11-203J24.8	-/+	+/+	9:127916161	9:127940395	exon	splice-site	deletion/read-through/3'-3'	downstream	upstream	4	1	0	15	26	low	.	.	duplicates(3)	CCTTGACTCAGGCAGTCGAGATGAACTGCCCCCCACATCCAGCTCTCTCTCTCACAGCCCGGGGCTTCTGCAGTAAAGACAAGAGCGGCTGAACTGAACTTCACAACCCCAGTTCCACGTAGGCTTTGCCTG|TTTTCTCCCCAGGAATCTGGAACGATGAAGGTGATGATTGTGCCTGTGGCCAAGACCGGGAGAACCCTGGATCCCTACACCTTCCCCACCCCTGGAATGTCACTATACATATCTGACTTCTTCTGATGTTGCCTTTGAC	.	.	.
TALL048	TSNARE1	RP11-953B20.1(22456),MIR4472-1(62264)	-/-	./-	8:142229473	8:142114075	splice-site	intergenic	deletion/read-through	upstream	downstream	0	3	2	13	6	low	.	.	duplicates(2)	CACAAGATCAAGTGCTGCTTCCTATCAGCTGGAGTCACTGCCCTGCTTGTCATCATCATCATCATCGCCACCTCTGTCCGAAAGTGATGCTACCCGTG|ATAATGCATCATTGACAGCCGTGGATCTGCAGCTTGTCCCCGTGACAGCCCCTGCAGCATCAGCAGACGAGGGACCTTGAGGTGGACAAGGAAACACAGTCCTGAAGAAGCTGGTGGGCCCAGGCCTGAAAAGCAGAGGTGGCTTCTCCTCTTTAGCCTGGTGGCAGCAG___ACCAGGGGTCAGACCATGAGCC...___CACCAGCTGTGAAAAGCCAGTCAAGGACACCCCGTGTGGCAGAGGC	out-of-frame	HKIKCCFLSAGVTALLVIIIIIATSVRK*cyp*|*	.
TALL048	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	2	1	22	27	low	.	.	mismappers(1)	GCCCAGCAGAACCTGGCTCTGCAGCTGGCCGAGAAGCTGGGCAGCCTGGTGGAGAACAACGAACGGGTGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACATTCTCTTCTGCACAAGTTGCCTTTGTGTGAGTATACTAACTTTCTG...GATGGATCCATGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCAGTAGACAGAAAG___GGCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAAGAC	out-of-frame	AQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTFNILFCTSCLCvsiltf	.
TALL048	TBC1D31	TBC1D31(26576),FAM83A(231)	+/+	./+	8:123144855	8:123178729	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	1	146	7	low	.	.	duplicates(1)	AAGAAG___TGGAAGGAAGCTGAAGGAAAAGAGTTCCGTTTGAGATCAGCAAAGAAAGCTTCTGCTCTTTCAGATGCGTCTAGAAAGTGGTTTTTAAAGCAAGAGATAAATGCGGCTGTAGAACATGCTGAAAATCCATGTCATAAAG|GAGCCCGGCTTCTCATCCTTTCTCTTATTGTTGGATGACCTCATGAAAAGGAGACAACCACACTTCAGATGGCCACAGGAAGGAAGAAGGGAAGTGGAGTCCTCCATAATCCACAGTGCCTGTCACTGAGGGCTCCTTGATAAGGATTTTTCAAGGTATGAACGTGCAGTTCAACAGCTGGCCAGACTTCCTGGTTCAGAAG	out-of-frame	KKWKEAEGKEFRLRSAKKASALSDASRKWFLKQEINAAVEHAENPCHK|garllilslivg*	.
TALL048	CLTA	RNF38	+/+	-/+	9:36204179	9:36375953	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	2	3	0	527	249	low	.	.	duplicates(1),low_entropy(1)	CGGGCATCGAGAACGACGAGGCCTTCGCCATCCTGGACGGCGGCGCCCCCGGGCCCCAGCCGCACGGCGAGCCGCCGGGGGGTCCGG___ATGCCAATTCTCGGAAGCAAGAAGCAGAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAATGGTATGCAAGACAGGACGAGCAGCTACAGAAAACAAAAGCAAACAACAG|GTGTGTTGCATCGTTCCCCTGAGAAGTGATGTTGGCTTGGTCGAACTGAAGGGGGCTGCCTATTTGATGTCATCTCCCATGGTCGCATTGGTGGTGAGGGAGCTGGTGATGCTGATGTATAATCAAAGACTGAA	out-of-frame	GIENDEAFAILDGGAPGPQPHGEPPGGPDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNr|cvasfp*	.
TALL048	SBNO1	CDK2AP1	-/-	-/-	12:123364701	12:123267282	splice-site	splice-site	deletion/read-through	upstream	downstream	1	4	0	102	435	low	.	.	duplicates(2),low_entropy(1),mismatches(2)	CGGCGGGGAGGTAGGCAGAGCAGGACGCCGCTGCTGCCGCCGCCACCGCCGCCTCCGCTCCAGTCGCCTCTGGTCCTTCAAACTCACACCTCCCGGGAGGAGCTGTGCTGGCGCCGGGTCCCGCGGGGAAA|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGACTACGGGCCACCGTCCCTAGGCTACACCCAG___GGAACTGGGAACAGCCAGGTGCCCCAAAGCAAATACGCGGAGCTGCTGGCCATCATTGAAGAGCTGGGGAAGGAGATCAGACCCACGTACGCAGGGAGCAAGAGTGCCATGGAGAGGCTGAAGCGCG___GCATCATTCACGCTAG...TGTTGGTTTTGAAGGATTTCCATCTTTTTACAAGATGAGAAGTTACAGTTCATCTCCCCTGTTCAGATGAAACCCTTGTTTTCAAAATGGTTACAGTTTCGTTTTTCCTCCCATGGTTCACTTGGCTCTGAACCTACAGTCTCAAAGATTGAGAAAAGATTTTGCAGTTAATTAGGATTTGCATTTTAAGTAGTTAGGAACTGCCCAGGTTTTTTTTGTTTTTTAAGCATTGATTTAAAAGATGCACGGAAAGTTATCTTACAG	.	.	.
TALL048	ARFRP1	STMN3	-/-	-/-	20:63700602	20:63644309	splice-site	splice-site	deletion/read-through	upstream	downstream	2	2	1	143	628	low	.	.	duplicates(2),low_entropy(1),mismatches(1)	CCGATTTAACAAGAACTACAAGGGGATGAGTCTATCCAAAATCACCACCACCGTGGGCCTAAACA___TCGGCACTGTGGATGTGGGAAAGGCTCGGCTCATGTTCTGGGACTTAGGAGGGCAGGAAGAGCTGCAGTCTTTGTGGGACAAG___TATTATGCGGAGTGTCACGGCGTCATCTACGTCATTGACTCCACCGACGAGGAGAGGCTGGCTGAGTCCAAGCAGGCGTTTG___...TGGTGCTGGCCAACAAGC...___ACGTGCCTCTCAATCCCTGACATCAAGACGGCCTTCAGCGACTGCACCAGCAAGATCGGCAGGCGcGATTGCCTGACCCAGGCCTGCTCGGCCCTCACAGG|CCTACAAGGAGAAGATGAAGGAGCTGTCGGTGCTGTCGCTCATCTGCTCCTGCTTCTACACACAGCCGCACCCCAATACCGTCTACCAGTACGGGG___ACATGGAGGTGAAGCAGCTGGACAAGCGGGCCTCAGGCCAGAGCTTCGAGGTCATCCTCAAGTCCCCTTCTGACCTGTCCCCAGAGAGCCCTATGCTCTCCTCCCCACCCAAGAAGAAGGACACCTCCCTGGAGGAGCTGCAAAAGCGGCTGGAGGCAGCCGAGGAGCGGAGGAAG___ACGCAGGAGGCGC	out-of-frame	TCLSIpdiktafsdctskigrrdcltqacsaltg|lqgedegavgavahlllllhtaapqyrlpvrghggeaagqaglrpelrghpqvpf*	.
TALL048	GRAMD4	TBC1D22A	+/+	+/+	22:46675552	22:46792520	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	2	570	131	low	.	.	duplicates(1),low_entropy(1),mismatches(2)	CGGGCCTTCTCCCATTAGTGTGCGAGAATGGCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTGCTCTACGTCACGGAGAA___TTACTTGTGCTTCGAAAGCTCCAAATCTGGGTCCTCAAAGAGGAACAAAGTCATCAAGCTAGTGGACATCACGGACATCCAGAAG|CATCCAGCACGTGTATGGTGCCCAGCACCCCCCCTTTGATCCACTGTTACATGGCAC___TTTGCTCAGGTCCACGGCCAAGATGCCGACCACACCAGTGAAGGCCAAGAGGGTCAGCACCTTCCAGGAGTTTGAGAGCAATACCAGCGATGCCTGGGACGCTGGGGAGGACGACGATGAGCTCCTGGCC	out-of-frame	MPTDYIRNGVLYVTENYLCFESSKSGSSKRNKVIKLVDITDIQK|hparvwcpappl*	.
TALL048	GRAMD4	TBC1D22A	+/+	+/+	22:46674750	22:46792520	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	610	131	low	.	.	low_entropy(2),mismatches(1)	TGGGTACTTCCAGTGGAAAGTGTGACAGGCGGGCCTTCTCCCATTAGTGTGCGAGAATGGCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTGCTCTACGTCACGGAGAA|CATCCAGCACGTGTATGGTGCCCAGCACCCCCCCTTTGATCCACTGTTACATGGCAC___TTTGCTCAGGTCCACGGCCAAGATGCCGACCACACCAGTGAAGGCCAAGAGGGTCAGCACCTTCCAGGAGTTTGAGAGCAATACCAGCGATGCCTGGGACGCTGGGGAGGACGACGATGAGCTCCTGGCCATGGCGGCGGAGAGCCT	in-frame	MPTDYIRNGVLYVTEn|IQHVYGAQHPPFDPLLHGTLLRSTAKMPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMAAES	.
TALL048	BCL11B	C14orf177(112066),AL132796.1(15069)	-/-	./-	14:99231427	14:98829827	CDS	intergenic	deletion	upstream	downstream	0	0	5	206	11	low	.	.	.	CAGAGGGAGCTCATCACCC___GGCCGTGCAGGCCTGCCCAGCTGCCAGCGGTGGCCCCCATAGCTGCCTCCTCCCACCCTCACTCATCCGTGATCACTTCACCTCTGCGTGCCCTGGGCGCTCTCCCGCCCTGCCTCCCCCTGCCGTGCTGC...|...GCAGTGTGGAAAGGATGACAGCATGGAGATCCCACAGCCCCTCTTCTATGCTCTGGCTGAGAAGAGACACATGTCACTTTGGTTCTTTGCTCCCTGCCCAGAACCAGTCGCGGGAGACAAACTGTGCACCAAGAAGGGGATATGAGTCAGATATTT___CCCTGGTGGTCAGAATTCTAAAATCAAGTTGTCAGCAGGGATGGGTCCTTCTGGAGGTTCAG___CCTACCTACGGACAAATGGTATGAAGAAGGACGGGGAAAAGTGAG	.	.	.
TALL048	CTC-281F24.3	SLC13A5	+/+	-/+	17:6657783	17:6692865	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	3	0	1	16	12	low	.	.	.	ACGGCGTCCTGAGCCTGCCTGAAGGCACCA___GGGCGAGAAGAGGaGCTCACCAAAAGTCACTGGCCAAGCCCTCCTCTGGCCTTCTAGGCCGTACTGTGGGCGACGACCCTCGAGGCCTGTTCCAGAAACACCAGGAAGAGGAGCTGGAAGAGAGAAGGAAGTTGTACCG|GCCCTGTGTGTGGTGTAGAGTTCCTAGATGACAAGACAGAGTCCATGTCCTCAAGGAATGTGCGGTTATACGAAGGATGCAGGCACAGAAACACACAAGCC...GAAGAGGGCTCTGGGCAGCCTGTGGCTGGAGAAGTTACCTCGGATCCTTTAGCCAGAGCAAATCCGCCCCCTAGTAGCAGCACGATGCCCCAGGGCACTTTCTCCTGGGTTACCTTCCAATCCAGCAGGGGAG	.	.	.
TALL048	AP001347.6	RBM11	+/+	+/+	21:14084144	21:14221097	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	79	14	low	.	.	duplicates(1)	CCGGAATCTGGCGCGGCCTTTGTCTCACTTCAGCCAGAGAGCGGGGTTAGGGCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCT...CTCGCTGCAGACATCTAGTGGACCCGGCGCTCGCGGACGGAAGCGGACAGACCTAGTTGGATCCTTATCCCACCAATCTGGCCCACCTTTGCTGCCATCTAACTCCGCTGACCGGCCCACCGTTCCTCCACTGTcCGCTGGTTGACCCGGGCAGCGGAGAGAGGAG|GGAGTTCTCGCTCTTCTGAACCAGCTAACCAAAGTTTTGAGAGCTGTGTTAAGATAAATTCACACAACTAC...AATTAATAATACTTCTTTACCTCAAGAATATTTTCTCTTTCAGAAGATG___CAGTGGCATGTGTATAATCCAGTGCTGCAGCTTCCTTACTATGAAATGACAGCTCCACTTCCTAATAGTGCATCCGTGTCTTCC	.	.	.
TALL048	PPIAP19(60597),RP11-106M7.1(13557)	ABLIM1	./-	-/-	10:114751231	10:114601961	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	7	215	low	.	.	mismappers(2)	CTTCTCTTCCTCCGCGTACTCAATGTAAAGATGACAAGGACCTTTGTGATGATCCACTTCCATTTAATACATG___ACTTACATCTTTTGTATGGAGTAGAAAGGACTAGAAAAAT|TGGCCCACCCTCAGGACCCTCACCACCCATCAGAGAAGCCTGTCATTCACTGCCATAAATGTGGGGAGCCTTGCAAGGGTGAAGTGCTTCGGGTCCAGACCAAACATTTCCACATCAAGTGTTTCACCTGCAAAG___TGTGTGGCTGTGACCTGGCACAAGGGGGCTTCTTCATAAAGAACGGAGAGTATCTCTGCACCCTGGACTACCAGCGGATGTACGGGACACGCTGCCATGGCTGTGGGGAGTTCGTGGAGGGCGAAGTGGTGACTGCTCTGGGCAAGACCTACCATCCCAATTGCTTTGCTTGTACTATCTGCAA___GCGCCCGTTTCCACCCGGAGACCGAGTCACATTCAATGGGAGAGACTGC	.	.	.
TALL048	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	3	1	0	7	5	low	.	.	.	GAAGGATTAAAAGAAGTAGCAATCTATATTTTAAGAAGAGATTACTGTAATTTCTTTCAGAAG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAG	out-of-frame	EGLKEVAIYILRRDYCNFFQKPVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwte	.
TALL048	EMC10	LRRC4B	+/+	-/+	19:50480977	19:50534061	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	2	1	432	9	low	.	.	duplicates(1)	TTTGTCCCTGCG___TGCTCCCTGGTGGAGTCGCACCTGTCGGACCAGCTGACCCTGCACGTGGATGTGGCCGGCAACGTGGTGGGCGTGTCGGTGGTGACGCACCCtGGGGGCTGCCGGGGCCATGAGGTGGAGG...GCAGCTGCAGCCGCCCACCACAGCCCCAGG___CCCTGAGACGGCGGCCTTCATTGAGCGCCTGGAGATGGAACAGGCCCAGAAGGCCAAGAACCCCCAGGAGCAGAAGTCCTTCTTCGCCAAATAC|GTTATTTTTTGAGAGCTGCTATGTGTCAAGTGTCATACTGGGCTCTGGGGATCCAGCTGTGGACAAGACAGACAAAGCCCTGTCTTCCTAGATCCTGGCCTCAGAGAAGAAGAGAGACACTAAACAAAACAATTATGCCAACAATCATTTAACCAGCAAAGGTGTACACAGATCGcGG	out-of-frame	QLQPPTTAPGPETAAFIERLEMEQAQKAKNPQEQKSFFAKY|vif*	.
TALL048	RUNX3	CLIC4(28966),RUNX3(26221)	-/-	./-	1:24919240	1:24873290	splice-site	intergenic	deletion/read-through	upstream	downstream	1	1	2	222	2	low	.	.	.	AATGACGAGAACTACTCCGCTGAGCTGCGCAATGCCTCGGCCGTCATGAAGAACCAGGTGGCCAGGTTCAACGACCTTCGCTTCGTGGGCCGCAGTGGGCGAG___GGAAGAGTTTCACCCTGACCATCACTGTGTTCACCAACCCCACCCAAGTGGCGACCTACCACCGAGCCATCAAGGTGACCGTGGACGGACCCCGGGAGCCCAGAC|TTGCTTGGAACACTGAACCAGGAGTCAAGACCAAGAGATGGGTTCTAGGTGTGGATTTGACGCTGTGTGACCTTGG___CCCAGGCAACAGAGGCACAGAGAGATGGAGCGGCTTGCCCAAGGCTACACGGCCAGCCAGACAGAAGGACTAGAGCTCAACCACCAGGCAATG___ATCCCAGAGAAGGGCTTGGCATGAACGT	out-of-frame	NDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREPR|lawntepgvktkrwvlgvdltlcdlgpgnrgterwsglpkatrparqkd*	.
TALL048	RMND5A	AC093616.4	+/+	+/+	2:86741049	2:87716753	CDS	exon	deletion	downstream	upstream	0	0	4	497	11	low	.	.	mismappers(1)	CACAAGTTCTCgGGCTACGGGCAGCTGTGCGAGCGCGGCCTGGAGGAGCTCATCGACTACACCGGCGGtCTCAAGCACcAGATCCTGCAGAGCCACG___GCCAAGATGCTGAATTATCAGGGACACTTTCACTTGTTTTGACACAGTGCTGTAAAAGAATAAAGGATACTGTTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGTGTTTCTCGGG...|...AGCAGGCCTGCGAAGGAAACTTACCCAAAGGGAAGTCT___AGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGCGGAGTGGCGCGATCTCGGTTCACTGCAGCCTCTGCCTCCCAG___GACGGCCTCCTGGTCCTGAAATGGAA	.	.	.
TALL048	RMND5A	AC093616.4	+/+	+/+	2:86741069	2:87716612	splice-site	splice-site	deletion	downstream	upstream	0	0	0	383	12	low	.	.	mismatches(1)	CAAAAATTGGCCTCCGACCACAAAGcCATCCACAGCAGTGTTTCTCGGGTTGGAAAAGCCATTGATAAG|GATTCACTTTAAGAGATTTGGAAACTCTTCCCTTTGGAATTGCTCTTCCCATCAGAGATGC...GGCCaGGcaCaGTGGCTCActCCTGTAATCCCAGCACTTcGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGC	out-of-frame	QKLASDHKaIHSSVSRVGKAIDK|dsl*	.
TALL048	GLIPR2	CLTA	+/+	+/+	9:36147894	9:36197551	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	446	435	low	.	.	.	GGGCAAGTCAG___CTTCCAAACAGTTTCATAATGAGGTCCTGAAGGCCCACAATGAGTACCGGCAGAAGCACGGCGTCCCCCCACTGAAGCTCTGCAAGAACCTCAACCGGGAGGCTCAACA|ATGCTGTTGATGGAGTAATGAATGGTGAATACTACCAG___GAAAGTAATGGTCCAACAGACAGTTATGCAGCTATTTCACAAGTGGATCGATTGCAGTCAGAGCCTGAAAGTATCCGTAAATGGAGAGAAGAACAAATGGAACGCTTGG	out-of-frame	GKSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQq|cc*	.
TALL048	GLIPR2	CLTA	+/+	+/+	9:36150949	9:36197551	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	359	435	low	.	.	low_entropy(1),mismatches(1)	GCGTGGAGCAGGGCCACTTGGCTGGGGTGCCAGGTGTTGGAGGGGAGCAGCAGCCTGTCCACATGGCCTAAGGTTTGAGCTGGGTGTTGCTTTCAGCATGCCATTATACTTTTGATGAGTGTTTTCTCTGCAC...GCCAGCACGAGGATCCTCAAGCACAGCCCGGAGTCCAGCCGTGGCCAGTGTGGGGAGAACCTTGCATGGGCATCCTATGATCAGACAG___GAAAGGAGGTGGCTGATAGATGGTACAGTGAAATCAAGAACTATAACTTCCAGCAGCCTGGCTTCACCTCGGGGACTG|ATGCTGTTGATGGAGTAATGAATGGTGAATACTACCAG___GAAAGTAATGGTCCAACAGACAGTTATGCAGCTATTTCACAAGTGGATCGATTGCAGTCAGAGCCTGAAAGTATCCGTAAATGGAGAGAAGAACAAATGGAACGCTTGGAAGCCCTTG___ATGCCAATTCTCGGAAGCAAGAAGCAGAGTGGAAAGAAAAGGCAATAAAGGAG	in-frame	ASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSGT|dAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIK	.
TALL048	PPP6R2	SBF1	+/+	-/-	22:50432329	22:50468461	splice-site	splice-site	inversion	downstream	downstream	1	2	1	206	374	low	.	.	.	AGCGGATCCGAGAGCAGGGTGGAGCCTCCGCATGAGAACGGGAACCGGAGCCTGGAGACTCCCCAGCCGGCCGCCAGCCTCCCTGACAACACAATGGTGACCCAC___CTGTTCCAGAAGTGCTGCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|GGAGTGGGGAAGGCCAGGGCCAGATTCTGCAGCGCTTCCCAGAGAAGGACTGGGAGGACAACCCATTCCCCCAGGGCATCGAGCTG___TTTTGCCAGCCCAGCGGGTGGCAGCTGTGTCCCGAGAGGAATCCACCGACCTTCTTTGTTGCTG	out-of-frame	SGSESRVEPPHENGNRSLETPQPAASLPDNTMVTHLFQKCCLVQRILEAWEANDHTq|ewgrpgpdsaalpreglggqpippghravlpaqrvaavsreestdllcc	.
TALL048	TTC33	AC108105.1(192657),SNORA63(141891)	-/-	./-	5:40730287	5:40513072	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	3	123	18	low	.	.	mismappers(1)	AAATTCTTCTTGAAGGCTGTGCTGAGAAAAGTAAACAGCTGAAGGATGAAGGAGCCAGTTTGGCTGAAAATAAAAG___ATATCGGGAGGCAATTCAGAAGTGGGATGAAGCACTACAGTTAACTCCAAATGATGC...|...CAGGAGACCTTAAGATAGAAAAACTGCCAGGAGGGACCTGTAGGTCTGCTTTCTCCACTCATGTTTGGAGAACACGTCTCCAAAGAAATTCATCTGAACTTGATGCAGAGATTCCTGGACTAGATTCCTGAGAAATCTAATGTCAGCTACAGAAATGCCCCAACTGATGAATTTCGTCATGAAGCAGAGCCTCAGAGCAAAAGCACATCAGCTAAGCATGCCCCAGTATGAGTGGCTGAGTATGCCATATTAGTCTTTCATAGTCTACCATAGAAGACTTTCAATTTTTTGCTTCATACTACTTAAAATAATGTAGAA	.	.	.
TALL048	DCPS	ST3GAL4	+/+	+/+	11:126338399	11:126406096	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	128	146	low	.	.	.	CTACACGGGAAG___GTGAATGAGGCCTCTGGGGATGGGGATGGAGAGGATGCCGTTGTGATCCTGGAGAAGACGCCATTTCAGGTGGAACAGGTGGCTCAGCTCCTGACGGGCAGCCCTGAGCTCCAaTTGC...CCGGATTGTTTTCGAGAACCCAGATCCCTCTGATGGTTTTGTCCTCATCCCTGACCTCAAGTGGAACCAACAGCAG|GTGGCCCGAGGCAGCCGGGATGACAGCTCTCCCCAGGAATCCTGCTGCCTGCTGAGAAACATGGTCAGCAAGTCCC___GCTGGAAGCTCCTGGCCATGTTGGCTCTGGTCCTGGTCGTCATGGTGTGGTATTCCATCTCCCGGGAAGACAGGTACATCGAGCT___TTTTTATTTTCCCATCCCAG...CGGGATCAGCCCATCTTCCTGCGGCTTGAGGATTATTTCTGGGTCAAGACGCCATCTGCTTAtGAGCTGCCCTATGGGACCAAGGGGAGTG___AGGATCTGCTCCTCCGGGTGCTAGCCATCACCAGCTCCTCCA	in-frame	RIVFENPDPSDGFVLIPDLKWNQQQ|vargsrddsspqesccllrnMVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIP	.
TALL048	KIAA1958	INIP	+/+	-/+	9:112645822	9:112696291	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	1	1	55	9	low	.	.	.	CAGTCAGCAGCAGCCCCCAGTCGCTCCAGCCATAACCACTGAGGCCACAGCACAGTGCATACCAG___CTTATTCCACTAAGCTCAACAAATTTCCTGTATTTAATATTAATGATGACTTGAATGATCTGTGTACC...CCCAAATACTACCAAAGCCACGCGGTACGCCTTGAATGTGTGGCGTTATTGGTGCATGACCAACGGGCTCAAAGACCACACAGACATCACCAAG|AGCTTAATCTTCCGGTGGAAGAAGCTCTGTGGGGCCTTTCCATGCTGCACGTCATGACTGGCTCCACCCAGTCTT...ACGCCTGTCTCGAGAGAAGTCTTCTACTCAAGGAAAGATTTAATACAGCTTTGAGAGACAGAGGAAAAACCAAACTGTTTTTGGAAAAAACAAACTATTCTCTACTCTCATTCAACACAAAACTTCTAACACCAAGCAATTCTTCAGTG	out-of-frame	PNTTKATRYALNVWRYWCMTNGLKDHTDITK|slifrwkklcgafpccts*	.
TALL048	EEF1A1P6	DNAH11	-/-	+/-	7:22511315	7:21774710	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	138	1	low	.	.	mismatches(4)	GTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGA...CCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCT...|...CAACACAGACC	.	.	.
TALL048	RP11-1277A3.2	TMED9	-/-	+/-	5:177626436	5:177595517	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	1	1	1	28	349	low	.	.	.	CTTCGGTCGGGGCCCGCAGCCATGGAGGATTACATCGTGATCTCGGACGACAGCGGCTCTGAGAGCTCCGGGGGCGCCCGCCCGGGCCGGTCGCGGAGGCcGCGCCGGGCCCTGTCGCGAACCTCCGGCGCGC...CTCAGTGGCTCTGAGACTGTGGATGTCCTAAAGGAGGCCTACATGCTTCTCATGAAAATTCAACG___GCTACATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCATGGAGGAAGAG|AACAGGTATGGCTGGAAACCAGTCCTCCTGACAGAAGAAGTCAGTTCCAGGAGGTCCTTTCTCCCCCAGCCTGGGAGGATGGGTTGTGACGCCTGGGACAGCTACACAAGCTTCTTGGCTTCAAAGAAGCTCTTGAGGTGCCGCATCTGCCAGACACCGATGGC	.	.	.
TALL048	SLC25A5-AS1	SLC25A43	-/-	+/-	X:119467666	X:119444093	exon	intron	deletion/read-through/5'-5'	upstream	downstream	2	1	0	11	9	low	.	.	.	GGCCGCTGGACCCGGGCGCATGGCCTCCCCCGGGCAGTTATCTCCTTGCCGCGACCTTGAGGTCTTCG___...GGACAAAAACCCTTGGAGCAGGACCAGGACTAGG___ACCGTGcGCTGTCCTGGAGCCAGTGAAACCAGACGAAATTAAGGGAACAGCAGACGAAGGAACTGCCACCGTGCCCCAGACCCTG|CTCAAAGAATCAATATTCTATGCTTTAAAAATATAGAATGGCTGGGTGC...AAGACCAGCCTGGGCAACATGACGAAACCTCATCTCTACAAAAGAAAAAAAAATTAGCCGGGCATGATGGCATGTACCTGTAGTCCCAGCTACTCAGGAGGGAGTAGATCCTGAGGCAGGAGGATCGACCGAG	.	.	.
TALL048	SPNS3	SPNS2	+/+	+/+	17:4453205	17:4513247	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	220	8	low	.	.	.	AAGAAAGTCATTCCAGGAGCTGAGCCCCTCATCTGCGCCTCCAGCCTGCTTGCCACAGCCCCCTGCCTCTACCTGGCTCTCGTCCTGGCCCCGACCACCCTGCTGGCCTCCTAT|GCGTCCTTCTGGACATCCAGCAGCACTTTGGGGTCAAGGACCGAGGCGCCGGCCTGCTGCAGTCAG___TGTTCATCTGTAGCTTCATGGTGGCTGCCCCCATCTTCGGCTACCTGGGCGACCGCTTCAACAGGAAGGTGATTCTCAGCTGCGGCATTTTCTTCTGGTCGGCCG	out-of-frame	KKVIPGAEPLICASSLLATAPCLYLALVLAPTTLLASY|asfwtssstlgsrteapaccsqcssvaswwlppssatwatastgr*	.
TALL048	SPNS3	SPNS2	+/+	+/+	17:4453205	17:4525057	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	220	21	low	.	.	mismatches(1)	GCTTGCCACAGCCCCCTGCCTCTACCTGGCTCTCGTCCTGGCCCCGACCACCCTGCTGGCCTCCTAT|TGTTCATCTGTAGCTTCATGGTGGCTGCCCCCATCTTCGGCTACCTGGGCGACCGCTTCAACAGGAAGGTGATTCTCAGCTGCGGCATTTTCTTCTGGTCGGCCGTCACCTTCTCC...CCCAGCAG___TACTTCTGGCTGCTGGTCCTGTCCCGGGGGCTGGTGGGCATCGGGGAGGCCAGCTACTCCACCATCGCCCCCACTATCATTGGCGACCTCTTCACCAAGAACACGCGTACGCTCATGCTGTCCGTCTTCTACTTCGCCA	out-of-frame	LATAPCLYLALVLAPTTLLASY|cssvaswwlppssatwatastgr*	.
TALL048	RPS3AP6(17993),RP11-568G20.2(84372)	BNIP2	./-	-/-	15:59787139	15:59682514	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	58	498	low	.	.	duplicates(2)	CTCGCAGAAGCTCGCATTGTGAATTTTAGCTCGAGATCGACTGCAAGAACAAACCAGCAATTCCCGAGAGGACCCACAGAACCTCTGAAGGAAGCAGACTGCTCCTGCAGGACCCAGGAGACACCCCAAATACT|GACATTGGCTCCCTGGATTATCAAGAGTTTGTAGTTGACATTGAATCCAGGCTGAGGATGGAAGGTGTGGAACTTAAAGAAGAATGGCAAGATGAAGATTTTCCGAT___ACCTTTACCAGAAGATGATAGTATTGAAGCAG	.	.	.
TALL048	ST3GAL4	RP11-115C10.1	+/+	+/+	11:126408491	11:126652794	CDS	5'UTR	deletion/read-through	downstream	upstream	0	0	3	165	3	low	.	.	.	CATGCGTCTCTTCTACCCTGAATCTGCCCACTTCGACCCCAAAGTAGAAAACAACCCAGACACACTCCTCGTCCTGGTAGCTTTCAAGGCAATGGACTTCCACTGGATTGAGACCATCCTGAGTGATAAGA...|...ACAGAGGCCTTTCAACTTTCCTCCCTGAGATCTTCCTCCGTGAACCAACAACAAAAGGACCAGCC-CCTCACTGGTCCTCTGTTGCCAGTAGAAAAAGCCCTACAAGGATTAATGCAAGAAGAAGTTCTGCTTT	.	.	.
TALL048	KLHL25	AKAP13	-/-	+/-	15:85794766	15:85716938	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	2	0	43	7	low	.	.	duplicates(1)	GCCGACGGGAGCCGCGGCGGAGCCTGTTGAGCTCGCGCGGGCTGCCGGGAGTGGTCTCTGAGGCGGCGGCGGCGGCGGGGATCGTCTCCGGCA|ATAACTACAGATCTAGCACTTACAATCAACTATGTTCTCTTTGGACTTTCTCAATCCCAACTCACCAGCTAGCACAGCAGGCACCCAATTGATGTGTGAGTAGACACAATAGCAAGAACACTTTAAAGACCAACTTTTGAAAGTTACAATGCAT	.	.	.
TALL048	KLRB1	RP11-705C15.2	-/+	+/+	12:9622436	12:9633425	intron	exon	deletion/read-through/3'-3'	downstream	upstream	2	0	1	13	8	low	.	.	low_entropy(1)	GTTAAACATTAATATAAAACTACTGCTCATCTTTAAAGCAATGATTTAAAGCCATAAATGTAACAGGAAGATCTAATTCTGGAAGACATACAAATGCCGAAAGGAAAATTAAAGCCACTTACCCCGAGGAAGAGATGAAGGTGAAGAACTTTCTGGGCCTGAGTCTGTGG...CAGCCAAACG___GGTCTCACGCTGTCACCCAGGCTGGAGTGGAATGGCgCTATCTTGACTCACTACAGCCTTAATCTCCTGAGCTCAAGCAATCCTCTCACCTCAGGCTCCTGAGTAGCTGGGACTACAA|ATGGGTTCTCTACCTGG...GAAGATGGACCCTCCATGTTGAACATGCCTGGCCCTCAG___ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCC	.	.	.
TALL048	UBE2L6	TIMM10	-/-	-/-	11:57560337	11:57530234	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	848	323	low	.	.	.	CAAAGACC___...CGAGCATGCGAGTGGTGAAG___GAGCTGGAGGATCTTCAGAAGAAGCCTCCCCCATACCTGCGGAACCTGTCCAGCGATGATGCCAATGTCCTGGTGTGGCACGCTCTCCTCCTACCC|GATTAGGAGGCCAGAAGGAGATCCCTTCCACGGTGCTAGGCTGAGATGGATCCTCTCAGGGCCCAACAGCTGGCTGCGGAGCTGGAGGTGGAGATGATGGCCGATATGTACAACAG___AATGACCAGTGC...G___GATGAAGAGCTGATGAAGAGGGTGCAGCAGAGCTCTGGGCCTGCATGAGGTCCCTGTCAGTATACACCCTGGGGTGTACCCCACCCCTTCCCACTTTAATAAACGTGCTCCCTGTTGGGTGTCATCTGTGAA	out-of-frame	SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLP|d*	.
TALL048	RRP1	AATBC(40317),MYL6P1(3006)	+/+	./+	21:43802387	21:43852884	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	75	5	low	.	.	mismappers(2),mismatches(1)	GGCGGCCCCGTcCTCCAG___TTTGACTACGAGGCAGTTGCTAACAGACTGTTTGAAATGGCCAGCCGCCAGAGCACCCCTTCTCAGAACAGcAAGCGTCTCTACAgAGTGATCCGGAA___GCTGCAGGAC...G___GCATTTTCCCTGAAGATGAGATCCCAGAGAAGGCCTGCAGGCGCCTGCTTGAAGGGAGGCGGCAGAAGAAGACGAAGAAGCAGAAGCGTCTGCTCAGGTTGCAGCAGGAGAGAG|GCTGGAGTGCAATGGTGCGATCTCGGCTCACCGCAACCTCCGACTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAG___ATTCCAAATTCTCTTCCCAAGAGGTGGCATGAACCTGTGAGTCCCAGCTGCAACCAACAGAGAAGCAAGCGAGCCGTGAACCTCATCGATCCGGCCAGTCAGCACCTCCGTCTCTCCACGCAGGCCAGGTGGC	out-of-frame	GIFPEDEIPEKACRRLLEGRRQKKTKKQKRLLRLQQER|gwsamvrsrltatsdswvqvillpqppk*	.
TALL048	ERCC6L	RGAG4	-/-	-/-	X:72238844	X:72128165	CDS	3'UTR	deletion/read-through	upstream	downstream	0	0	2	20	0	low	.	.	mismappers(1)	CTCCAAGCTCCAAGCTCCAAGCTCCAAaCTCCAAACTCCCGCCGGGGTAACTGGAACCCAATCCGAGGGTCATGGAGGCATCCCGAAGGTTTCCGGAAGCCGAGGCCTTGAGCCCAGAGCAGGCTGCTCATTACCTAAG...|...AG___CTGATTTTATCTGATTTCCTCAAGAGTGCATTCCAGAAGGGGACCTGCTATTCTTCGAGGGGACCTGCTATTCTTCGAGGCAGTGGACCCTGTTTGCTGATGGTCAACACTCTGGCCCTGC	.	.	.
TALL048	PPCDC	C15orf39	+/+	+/+	15:75044519	15:75206028	exon	5'UTR	deletion/read-through	downstream	upstream	0	0	2	68	78	low	.	.	mismappers(2)	AGCCAAACATTTCTACAGCCCCCAGGACATTCCTGTCACCCTCTACAGCGACGCTGATGAATGGGAG___ATATGGAAGAGCCGCTCTGACCCAGTTCTGCACATTGACCTGCGGAGGTGGGCAGACCTCCTGCTGGTGGCTCCTCTTGATGCCAACACTCTGGGGAAGGTGGCCAGTGGCATCTGTGACAACTTGCTTGTcAG...|...GGGCTCGAAGCCTTCACAGCGATGGCAGAGAAGCGACCCCTGAGAACCCTGGGGCCTGTGATGTATGGCAAGCTGCCCCGCTTAGAGACAGACTCCGGGCTCGAGCACAGCCTGCCCCACTCTGTTGGTAACCAGGATCCCTGCACCTACAAGGGGTCCTACTTCTCCTGCCCCATGGCgGGTACTCCTAAGGCCGAGTCTGAGCAGTTGGCGTCCTGGACCCC	.	.	.
TALL048	PHEX	PTCHD1-AS	+/+	-/+	X:22245409	X:22292848	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	0	1	1	7	1	low	.	.	low_entropy(3),mismappers(1),mismatches(3)	GCTCTTCTTCCTGAGTTATGCTCAT___GTGAGGTGCAATTCCTACAGACCAGAAGCTGCCCGAGAACAAGTCCAAATTGGTGCTCACAGTCCCCCTCAGTTTAG|CCTCCATCTGCAAACCCAATCAAGCCCTTCTCTCTCCGACGCCCCTCAAAAGCTACCATTTA___GTTTCCTGAGGCCTCCCCGAAGCCAAGCAGATGCCAGCACCACGCTTCCTGTATAACCcGCAGAACCATACGCC	out-of-frame	LFFLSYAHVRCNSYRPEAAREQVQIGAHSPPQFs|lhlqtqsspslsdapqklpfsflrpprsqadasttlpv*	.
TALL048	ZNF107(23043),RP11-416N13.1(1308)	ZNF138	./+	+/+	7:64734625	7:64831451	intergenic	splice-site	deletion/read-through	downstream	upstream	0	2	0	12	301	low	.	.	mismappers(2)	CCAGGCTGGAGTTCGGTGGCACCATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAACCTCCAGAGCAACTAGGACTACAGGCTCACACCACCACACCTGGCAAATTTTTTTTTTTGAAATGACAAC|CTCTGTGTTCTCGTTTTGCCCAAGACCTTTGGCTAGAGCAGAACATAAAAGATTCTTTCCAAAAAGTGACACTGAGCAGAaATGGA...CATAAATTTTCAAATTCAAATAGACACAAGATAAGACATACTGAAAATAAACATTTCAGATGTAAAGAATGTGACAAATCACTTTGCATGCTTTCACGCCTAACTCAACATAAAAAAATTCATACTAGAGAG	.	.	.
TALL048	SEL1L	CEP128	-/-	-/-	14:81479629	14:80823371	CDS	intron	deletion	upstream	downstream	0	0	2	222	8	low	.	.	mismappers(1)	AAAGGACTGGGCATTAAACAG___GATATTCACCTTGCGAAACGTTTTTATGACATGGCAGCTGAAGCCAGCCCAGATGCACAAGTTCCAGTCTTCCTAGCCCTCTGCAAATTGGGCGTCGTCTATTTCTTGCAGT...|...AACAACTTTTCACAAGCCGACCCTGACTTTCAGGAAGTGAAATGAAAaTGGCAGAATTTATCTGAAGATCCaCAATCTaGAAATGGAACCACTGCTCTTTTGACAGGTGCCATCTCAGTGGCATCACTGGAA	.	.	.
TALL048	LINC01226	TTC38	+/.	+/.	1:31524165	22:46287539	exon	intron	translocation	upstream	downstream	0	0	2	32	11	low	.	.	.	.	.	.	.
TALL048	CD53	RP11-96K19.5(40959),CCNT2P1(2092)	+/+	./+	1:110895055	1:111005608	splice-site	intergenic	deletion/read-through	downstream	upstream	1	0	1	550	6	low	.	.	mismappers(3)	GTTTTTCTTCAACTTGCTCTTTTGG___ATCTGTGGCTGCTGCATTTTGGGCTTTGGGATCTACCTGCTGATCCACAACAACTTCGGAGTGCTCTTCCATAACCTCCCCTCCCTCACGCTGGGCAATGTGTTTGTC...ACAGAAG___CTGAATGAGTATGTGGCTAAGGGTCTGACCGACAGCATCCACCGTTACCACTCAGACAATAGCACCAAGGCAGCGTGGGACTCCATCCAGTCATTT|ACTTTCTCCAAGCTACTCAGAAGACTGAAGCAGAAGGATCACTTGAGGCCAGGAGTTCAAGATCAGCCTGAGCAACATAGTGAAACCCTATCTCTAAAAATACAAAAAAAAAcAAAAATGTGATCCTGAGAAAAGGAAACAAAAA___ACATACAACACCTAACAGAGTAATGTT	out-of-frame	QKLNEYVAKGLTDSIHRYHSDNSTKAAWDSIQSF|tfskllrrlkqkdhlrpgvqdqpeqhsetlslkiqkktkm*	.
TALL048	RGPD1	AC125232.1	+/+	-/+	2:87004775	2:87037303	intron	exon	deletion/read-through/5'-5'	downstream	upstream	0	0	2	4	67	low	.	.	low_entropy(1),mismappers(1)	GGGAAAACTTGCTGCGGTTGCTCAAG___TAGAGACAAGGTTTCACCATGTTGCCCAGCTGGTCTTGAACTCCTGAGTGCAGGCAATCCACCCACCTCACCCTCCCAAAGTGCTAGGATTACAG|CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTGGACATTGTGAGGAACATCCAGCTCTGTGGACGTTGGGG___ACATTAAGGAAAAATGACATCTTAAGAAAAG	out-of-frame	GKLAAVAQvetrfhhvaqlvlns*vqaihpphppkvlglq|ptgllqyvcelsldiqgqcqplqplghceehpalwtlgtlrkndilrk	.
TALL048	SPATA2	SLC9A8	-/-	+/-	20:49915380	20:49868439	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	0	1	78	3	low	.	.	mismappers(1)	GCTGGCCCCCGGGTACTGGTCTCAGTACCCCTGCAGCCGGCCGGAGAGGCTAGAGCCCGACGGGGCCCGGCTCCGGCGGCAGCCGCGCCTCTCGCTTGCTTCCCTCGGCCGGGCCGTCCTCGGCGGCAGTGTCAGG|TGCAATGTGGGGCGTCCACACACCACACAGGGCCATCCTGCCCCTCTCTGAAAACCCTGCGTGACAAATACCCAAAAGG	.	.	.
TALL048	TIMM8A	TAF7L	-/-	-/-	X:101348533	X:101287545	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	78	5	low	.	.	.	CTCCTCTTCCTCCGCGGCGGGTTTGGGTGCAGTGGACCCGCAGTTGCAGCATTTCATCGAGGTAGAGACTCAAAAGCAGCGCTTCCAGCAGCTGGTGCACCAGATGACTGAACTTTGTTGG|ACATGAGTGAAAGCCAGGATGAAGTTCCTGATGAAGTTGAGAACCAGTTTATATTGCGTCTGCCTCTG___GAACATGCTTGTACTGcCAGG	out-of-frame	SSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCW|t*	.
TALL048	C21orf33	AP001056.1(6930),AP001057.1(17907)	+/+	./+	21:44140342	21:44183383	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	196	7	low	.	.	.	GCGAGAGCAG___GAATGTTTTGACCGAGTCTGCGAGGATCGCCCGTGGCAAAATCACAGACCTGGCCAACCTCAGTGCAGCCAACCATGATGCTGCCATCTTTCCAGGAGGCTTTGGAGCGGCTAAAAACCT___G...CGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG|CTCCTGTTCCATCCCCGTCTATTTCATCTGATGTCTCACCAGCTCCTGTTCCATCCCCGTCTATTTC...GCTCCTGTTCCATCCCCAGCTATTTCATCTATTTCATCTAACATCTCACCAGCTCCTGTTCCATCCCCAGCTATTTCATCTATTTCATCTATTTCATCTAACGTCTCACCAGCTCCTGTTCCATTCCCGTCTA	out-of-frame	GKDCKVNKEVERVLKEFHQAGKPIg|scsipvyfi*	.
TALL048	MAFK	MAD1L1	+/+	-/-	7:1530898	7:1898390	splice-site	splice-site	inversion	downstream	downstream	0	2	0	346	185	low	.	.	.	GCGACAGTGAGCGCCGGCGCGAGGACAGCGCGTGCCCGCGAGGAGCCGCCGCGCGCCCGCGCCCTCCGCGCGACGCCAG|AGCTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGG...CCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCG...GCAGCAGCATGACTGACAGACACGCTGGGACCTACGTCGGGCTTCCTGCTGGGGCGGCCAGCACCCTCTCCACGTGCAGACCCCATGCGTCCCGGAGCCTGGTGTGTGGGCGTCGGCCACCAGCCTGGGTTCC	.	.	.
TALL048	MAFK	MAD1L1	+/+	-/-	7:1530898	7:2002121	splice-site	splice-site	inversion	downstream	downstream	0	1	0	346	73	low	.	.	.	GTGCCCGCGAGGAGCCGCCGCGCGCCCGCGCCCTCCGCGCGACGCCAG|GCTCAGCTGTCGCAGGCCCTGGAGGAGCTGGGAGGCCAGAAACAAAGAGCAGACATG___CTGGAGATGGAGCTGAAGATGCTGAAGTCTCAGTCCAGCTCTGCCGAACAGAGCTTCCTGTTCTCCAGGGAGGAGGC	.	.	.
TALL049	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	5	20	8	309	105	high	.	.	duplicates(9),low_entropy(10),mismatches(1)	GGAGAACCGGCCGCTGCCCGCCCTGCAGGTGCCCGAGCCGCAGGGTGCGCCCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGG...TCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCCTCATTCCCAATGCCATCCAAGTTTGCACTGATTCAGAAAAG___C	.	.	.
TALL049	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	13	3	3	53	87	high	.	.	duplicates(9),low_entropy(1)	GCTCCTCTTCCCCGCCTGCTTCCCTCCGCCGCGCTCCCCCCTCCTTTTTTTTATTTGCATCTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCT...ATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGaCCC	.	.	.
TALL049	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	8	4	3	47	87	high	.	.	duplicates(4),inconsistently_clipped(1),low_entropy(3),mismatches(1)	GGCTGCGGGGCCCCCAGGCGCCCCGGCCCCTCCCCGGGCTCCACGCCGCGGGCAGGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGC...CCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCC	.	.	.
TALL049	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	13	0	92	112	high	.	.	duplicates(10),low_entropy(11),mismappers(3)	AACAGACAGTCTGCAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGA	.	.	.
TALL049	SLC23A2	SIRPB2(19265),RP4-576H24.2(5907)	-/-	./+	20:4899555	20:1510852	splice-site	intergenic	inversion	upstream	upstream	1	2	2	92	7	high	.	.	duplicates(2)	CGGCTTTGAACTTGGACCTTGGTGCATAAGCAAATGTAACTCAGCGAATTGTAATGGAAAGCATATGGACAGGTCTACGCCACATCACTTAG___GTGCTAAGAGATGCCGTTTGCAGGCCTCATCaCTGCT...CAGCGATCAGACATGATTTATACCATAGAAGATGTTCCTCCCTGGTACCTGTGTATATTTCTGGGGCTACAG___CACTACCTGACATGCTTCAGCGGCACGATCGCAGTGCCCTTCCTGTTGGCCGATGCCATGT...GGGACCATTTTCTTCTGTGTGGGAATCACTACTTTGCTACAGACAACGTTTGGATGCAG|TCCATGCCTGCATAAGTATTAATACTTGTTTTGCACCAGAGCGTGGAGACTGCATTGTATCAAAGGGCTTTTGGGAGACCAGAAGGATGGAAAAGGAAAATCTGGATATTTTAGCTCTGCTGATTGGCTGCCCTGGCAACAGACCAAATGACTCCAAAAATAACTCTCCAGCTCTGACCCGTCTCCTGAACTTCAGATGCATCTGTCCGTGTGCCTACTTAACAGCTCCACTTTGATGACGAACCAACATTATATTTAACATGTTTAAAATGGAACTGTTAATTCAGTTCCATTCCACCACCAAACCC	out-of-frame	GTIFFCVGITTLLQTTFGCs|pclhky*	.
TALL049	PQLC1	CTDP1	-/-	+/+	18:79919184	18:79695225	splice-site	splice-site	inversion	upstream	upstream	1	0	4	170	329	high	.	.	.	TCTCGGACTACGTGCAGTGCGTCCTGGCCTTCACGGGCGTGGCGGGCTACATCACCTACCTGTCCATTGACTCCGCCCTGTTTGTGGAGACCCTGGGCTTCCTGGCTGTGCTGACCGAAGCCATGCTGGGTGTGCCCCAGCTTTACCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|AGCGGTTCTGGTGAGGTTGGAAGGATGCAGCCACCCGGTTGTCA	in-frame	SDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMr|AVLVRLEGCSHPVV	.
TALL049	CAPN15	UBE2I	+/+	+/+	16:533998	16:1314020	splice-site	splice-site	deletion	downstream	upstream	0	3	1	32	580	high	.	.	duplicates(3),low_entropy(1)	ATTTACTGGTTTTAGAGATGGGGATGGGCACCCAGTGCTGGACTGAAGACCAGAGAAGGTGGAGCTCCCTGTGGCCTTGGTCTCACCTCTCTTCAG___G...GCAGAAGTTGTGGATCGGCCGGCGGGGGCGAGCGGGCCCGGGGGCCGGGGCCGCGCTGCCCGGGCCGCGAGGACGAGGCGGCGCCGCCGGGCTGTGGAG___G...CACAGAGAGGGCCTGGGAGCTTGCTGCAGCTTCAG|GGACTTTGAACATGTCGGGGATCGCCCTCAGCAGACTCGCCCAGGAGAGGAAAGCATGGAGGAAAGACCACCCATTT___GGTTTCGTGGCTGTCCCAACAAAAAATCCCGATGGCACGATGAACCTCATGAACTGGGAGTGCGCCATTCCAGGAAAGAAA...CCAAAAT___GTAAATTCGAACCACCATTATTTCACCCGAATGTGTACCCTTCGGGGACAGTGTGCCTGTCCATCTTAGAGGAGGACAAGGACTGGAGGCCAGCCATCACAATCAAACAG___ATCCTATTAGGAAT	.	.	.
TALL049	MAD1L1	MAFK	-/-	+/+	7:1898200	7:1539149	splice-site	splice-site	inversion	upstream	upstream	1	0	2	81	192	high	.	.	duplicates(1)	CAACTCCTGTTGAGGAACAGAGCGAGCACCTGACCTGCACCCTCCACAGTGGGCCGGGCGCCGGAGTGCACAGGGCAGGCGGGGCTGTGGGTCCAG___AGCTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAG|CTACGAGTTCCAGGGAGCTCTGTCCTGGTGACCGTGCCCGGGTTATGACGACTAATCCCAAACCGAATAAGGCATTAAAG___GTCAAGAAGGAGGCGGGCGAGAACGCCCCGGTGCTCAGCGATGATGAGCTGGTGTCCATGTCGGTGCGGGAGCTGAACCAG	out-of-frame	S*RSRWRVPS*RTSGSRRFSRPRSRSSARPATRSPATRSTSPRRTSTG*PRCTPSTQATASSSs|yefqgalsw*	.
TALL049	MAFK	MAD1L1	+/+	-/-	7:1530898	7:1816228	splice-site	splice-site	inversion	downstream	downstream	0	1	0	170	172	low	.	.	.	GCGACAGTGAGCGCCGGCGCGAGGACAGCGCGTGtCCGCGAGGAGCCGCCGCGCGCCCGCGCCCTCCGCGCGACGCCAG|GCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCAC...CATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCgTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAGCCTGCAGGCTCGGGGGCATAGCCGGAGCCACTCTGCTTGGC	.	.	.
TALL049	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	12	2	64	33	medium	.	.	duplicates(5),low_entropy(2),mismappers(2),mismatches(2)	GTGCAGGGCCTGGCCAGAGCGGGCCTGGCCACGGGCAAGGGACAGCGACCCCCGGGCCAGGACAGGTGAGAGCGGCGCAGGCCCGGGCCCGGCGTGGCGGAGGTGCGCGTGAGCGGCCAGCAGAGGGCGCC...CGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGGTCCGGGTCCCTGCGGCGGACGGGTCGGATCGTGCTCGTGGC...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL049	NSFL1C	SLC23A2	-/-	-/+	20:1443587	20:4896063	3'UTR	intron	inversion/5'-5'	upstream	upstream	6	7	4	87	22	medium	.	.	duplicates(5)	GCCAAAGCCAGCTCTTCCATCTTAATCaACGAATCAGAGCCTACCACAAACATCCAAATTCGGCTTGCAGACGGCGGGAGGCTGGTGCAGAAATTTAACCACAGCCACAG___GATCAGCGACATCCGACTCTTCATCGTGGATGCCCGGCCAGCCATGGCTGCCACCAGCTTTATCCTCATGACTACTTTCCCGAACAAAGAGCTGGCTGATGAGAGCCAGACCCTGAAGGAAGCCAACCTGCTCAATGCTGTCATCGTGCAGCGGTTAACATAACCGCCCAGCCAGCTGCCTGGCCTCCCTCCTGTGTTTCCCATGGCCAGTGGCCATGCCCCATGGGGATCGCCCCTCCTGCCCCCTTGTGCAtACCCAGCAGTCCAGTGCAACGTCTCCTCCATAGCTCTGGGTTCTTAGATCTTGGTTGGACGTTTGTTTTCT|AGTCTGCATCCCAACAGGAAGGGATGGAGGGTGGAGAGACGTGGGGGGGATGAGAGAAGAGGAGACACACGAACATGGGGTGCAGCAAACGTGCCCCCCACGGTGACTGGCCAGTCAAGGGGGGAACCAGCGGCCTCTCTCGTTGCCTCAGTGCCCCTTCGCTGCCTCAGACACGCAGCCCCCTGCACAGCAGGCCCCCAAGTGTGCTAAGGACCCAC...CAGACAGGGTCTGAGGCCGTGCGGAGCAGGAGCCCCCACgGGAGCCCCAGCTCACTGCCCACaTGCTGGTCGGAGAGGAAGCAAGGGGTGCAGGCAACACACAGCACTGCAGGCTCAGATTCACAGCAAAAGC	out-of-frame	AKASSSILInESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT*ppsqlpglppvfpmasghapwgspllppcaypavqcnvssialgs*ilvgrlfs|slhpnrkgwrverrggderrgdtrtwgaanvpptvtgqsrgepaaslvasvplrclrhaapctagpqvc*	.
TALL049	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	6	0	98	483	medium	.	.	duplicates(7)	GTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL049	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	9	483	low	.	.	read_through(4)	GGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCG...CTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAA	out-of-frame	LTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL049	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482892	17:4483872	intron	intron	duplication	upstream	downstream	0	2	1	19	15	medium	.	.	.	.	.	.	.
TALL049	PSMD13	PSMD13	+/+	+/+	11:247617	11:245148	exon	intron	duplication	downstream	upstream	2	0	1	37	15	medium	.	.	duplicates(3)	TCCAGTAAATACTATCAAACAATCGGAAACCACGCGTCCTACTACAAAGATGCTCTGCGGTTTTTGGGCTGTGTTGACATCAAGGATCTACCAGGTAACCTAGGCCATTAAATCCATGTCACACAGGAGCATATTCTCCAAACTTAGCATCTGTGAGTTGCTTGAGGTG...AGTGAGTGGATCACCTGA|GGCCAGGCTGGTCTGGAACTCCTGACCTCAAGTGATCCCTCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGCCGTGAGCCGCTGCGCCCAGCCCCCCCGATTGCTAACCTTTTACCGCTTTTGCCTTTGTGTGTG	.	.	.
TALL049	NAA16	NAA16	+/+	+/+	13:41376005	13:41373540	3'UTR	intron	duplication	downstream	upstream	2	0	1	76	32	medium	.	.	.	CCAATATGAAGAATATAGGATGGCCTGTCATAACCTGCTTCCTTTTACATCTGCCTTCTTGCCTGCTGTGAATGAAGTCGACAATCCTAATGTGGCACTGAACCATACAGCTAATTATGATGTCTTGGCAAAT...AAAATTACCTGTTTATTCTTACACAGTTTTGTGGTAGCTCCGATCGCTTCTGTATAATTATAATTTCTTACTAAGCTAAGTTGTATACAACCCCACTGTATTATTTTCTTTAGATTCTGATTTCAGGATCTGTGCTTTGATTCCTTGTCTGTTTTATCGTATATTTGCTTGCTTTTTAATTAAAGCACATCAGTTTTAAAGTGTTAACTATATGTTAACAATATG|GAGCCACCGCGCCCAGCCATAA...AAAAATCCAAATGTTTTTGTTTTTATAGTGTCTAATCATAGTAATCTTCCAGACATTGTGAGCAAAGTTCTATCTCAAGAAATGCAGAAAATATTTGTCAAAAAGGATTTGGAAAGTTTTAATGAGGATTTTC	.	.	.
TALL049	USP11	CDK16	+/+	+/+	X:47233219	X:47223552	splice-site	splice-site	duplication	downstream	upstream	2	1	0	205	352	medium	.	.	duplicates(4)	CGACGGTCGCAGCAAATCCAGCTGCTGCTGCGGCGGCTGTGGCGGCGGCAGCGGCGGTGACTGAGGATAGAGAGCCACAGCACGAGGAGCTGCCAGGCCTGGACAGCCAGTGGCGCCAGATAGAAAACGGCGAGAGTGGGCGAGAACGTCCACTGCGGGCCGGCGAAAGCTG|ATCGCCATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACACTCCGAGGTGGCCGAGGCATAGACAAG...GATGGGGAGAGTGACCAGGCTTCAGCCACGTCCTCGGATGAGGTGCAGTCTCCAGTGAGAGTGCGTATGCGCAACCATCCCCCACGCAAGATCTCCACTGAG___GACATCAACAAGCGCCTATCACTACCAG	out-of-frame	TVAANPAAAAAAVAAAAAVTEDREPQHEELPGLDSQWRQIENGESGRERPLRAGES*|spwig*	.
TALL049	DUSP18	DUSP18	-/-	-/-	22:30654117	22:30657808	intron	intron	duplication	upstream	downstream	0	1	1	7	9	medium	.	.	mismappers(1)	GTGACAGCCACCCTGGAGGAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGcATAAGAAACAGCTCATGGGATGGCCGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCGGAGGCGGGC...GGTGAAACCCgGTCTCTACTAAAAAAATAAAAAATAAAAATAGCCGGGCGTGGTGGCGGGCGCCCGTAG|CCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCACACCCGGCTAATTTTTTGTACTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATTGTCTCGATCTCCTGACCTCGTGATCCACCTGACTtGGCCTCCCAAAGTACTGGGATTACAGGCATGAGCCACCGCGCCTGGCCTATTTTTTAAATCTTTAAAAAATTTTTTTAGAGACAGCGTCTCACCATATTTCCCAGGCTGGTCTCAAATTCCTGGGCTCAAGTGATC	.	.	.
TALL049	HOOK3	GTF2A2	+/+	-/-	8:42897188	15:59642262	splice-site	splice-site	translocation	downstream	downstream	1	0	1	93	380	medium	.	.	.	CTGGGCGAGAGTCGGCGGCCGGATCCGAGGAGCAGGCGGGCCTGAGGCCGAGTCAGCTGCGCGGGCCCCCGGATCCCCCGACAGAGCGGCGGCGGTGTCTGGCCAGGCGGTAGGCGCTGCCTGGCCGCGGCGGGGAAGATGTTCAGCGTAGAGTCGCTGGAGCGGGCGGAGCTGTGCGAGAGCCTCCTCACTTGG|GGCTCTCTAAATACGTACAGATTCTGCGATAATGTGTGGACTTTTGTACTGAATGATGTTGAATTCAGAGAGGTGACAGAACTTATTAAAGTGGATAAAGTGAAAATTGTAGCCTGTGATGGTAAAA___ATACTGGC	in-frame	MFSVESLERAELCESLLTW|GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNT	.
TALL049	TTYH3	MAD1L1	+/+	-/-	7:2632278	7:2069338	splice-site	splice-site	inversion	downstream	downstream	1	1	0	153	82	medium	.	.	duplicates(1)	AGCAAGGGAGCCCCGCGCAGGCCGCGCGCATCCGGAGGCGGCCGGGCCCCGCCATGGCCGGGGTCAGCTACGCGGCGCCCTGGTGGGTGAGCCTCCTGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|CGCCCGGGGGCTGGAGAAGGCCAGGCAGCAGCTGCAGGAGGAGCTCCGGCAGGTCAGCGGCCAGCTGTTGGAGGAGAGGAAGAAGCG	out-of-frame	MAGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQ|rpgagegqaaaaggapagqrpavggeee	.
TALL049	MAD1L1	TTYH3	-/-	+/+	7:2069194	7:2661668	splice-site	splice-site	inversion	upstream	upstream	1	0	1	86	207	medium	.	.	.	CCGGGGGCTGGAGAAGGCCAGGCAGCAGCTGCAGGAGGAGCTCCGGCAGGTCAGCGGCCAGCTGTTGGAGGAGAGGAAGAAGCGCGAGACCCACGAGGCGCTGGCCCGGAGGCTCCAGAAACGGGTCCTGCTGCTCACCAAG|TACACCTCCAGCATGAGAGCCAAAT...GCCAACTTCCCCTCCCCGTGCCAGCACTGCCGCTTCCACCTGGGCCACCCACCGGACCCTCGCACGCCGTGCCAGGCCTGCCCCAGACGCGTCTGCAGGCCGCTTGCCCTCCTGTCCCCTCCCCGCAGGGGC	in-frame	RGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTK|YTSSMRAK	.
TALL049	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1065478	splice-site	splice-site	inversion	downstream	downstream	1	1	0	762	30	medium	.	.	duplicates(1)	GCCCCCGCGGGCTCCCGGCCCCGGCTTCAGAACTCAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|AACATACGGTCCCTAATGAGCACAGAGAAGACCAAGGGCTTCTGCC...CATGGCCTGGCCCGCATCCTGGAAGCAGGAGGACAACCCCTTCTCCTGGAAGAACTTTGTGG___ACACCGTCCGCGACACCACCGCCGCGCACCAGGCTCTGCTGGTGGCCAAGAACGTCGACTCGTTTCCGC	in-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|NIRSLMSTEKTKGFC	.
TALL049	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1079496	splice-site	splice-site	inversion	downstream	downstream	1	0	0	762	20	low	.	.	duplicates(1)	CGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GTATCATGGCGGGTTCAAACCGGTCCGGGGACCTCAAGG	out-of-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|vswrvqtgpgts	.
TALL049	SLC12A7	NKD2	-/-	+/+	5:1093533	5:1032152	splice-site	splice-site	inversion	upstream	upstream	0	1	0	18	561	low	.	.	.	CTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACGAGGAGAGCCGGCGGCGGGAGGCCAAG|GAGCTGCCCAATGGGGACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTACAGG...CTCCGGCCTCACTTGCGGGAACACGTCCCTGGGGCCGGGGGCTCAGGGACAGGCATGTGTTGCCCTAAACTGGGCATCTGTGGACACGGCGTAGTTCACTCAGTCTTCCCCACAGTTCACCCCGTTTAAG	in-frame	YTNLSQGVVEHEEDEESRRREAK|ELPNGDPKEGPFREDQCPLQ	.
TALL049	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	2	6	1	183	422	low	.	.	duplicates(3),low_entropy(1),mismatches(1)	GCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAAGGACAAG	.	.	.
TALL049	MLLT11	GABPB2	+/+	+/+	1:151060553	1:151088190	splice-site	splice-site	deletion/read-through	downstream	upstream	6	0	0	281	35	low	.	.	duplicates(1),low_entropy(1)	GTGAACTGACAGACTCAGTCACTGAAGAGGGAAAAGGAGTGAGAAGACAAAGCCGTCAAAGCCCCAACAGCTTTGTATTTCTCCAGCCCGGCGCAGACCCCGGAGCTCCCGAGGCACTCCCTCCATCTTTGGAACACGCCAGTAATTGATTGATAACAG|ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAACGTTGATGGCAAATGGC...ATGGTCATTATTCCACAGCAGAAGTACTCCTTCGAGCAGGTGTTAGCAGGGATGCCCGGACTAAAGTAGACAGGACCCCCTTGCACATGGCTGCAGCCGATGGACATGCGCACATCGTGGAACTGCTTGTTCG	.	.	.
TALL049	PHF6	PHF6	+/+	+/+	X:134393952	X:134393501	splice-site	splice-site	duplication/non-canonical_splicing	downstream	upstream	1	4	0	78	94	low	.	.	duplicates(3),same_gene(1)	GTGTTCTTTGTGCCATTGTCCTGGAGCAACAATTGGTTGTGATGTGAAAACATGTCACAGGACATACCACTACCACTGTGCATTGCATGATAAAGCTCAAATACGAGAGAAACCTTCACAAGGAATTTACAT___GGTCTATTGCCGAAAACACAAGAAAACTGCACATAACTCCGAAG|ATGTGTTCTTTGTGCCATTGTCCTGGAGCAACAATTGGTTGTGATGTGAAAACATGTCACAGGACATACCACTACCACTGTGCATTGCATGATAAAGCTCAAATACGAGAGAAACCTTCACAAGGAATTTACAT___GGTCTATTGCCGAAAACACAAGAAAAC	out-of-frame	CSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSE|dvffvplswsnnwl*	.
TALL049	EEF1A1P6	RAPGEF5	-/-	-/-	7:22511507	7:22333897	exon	intron	deletion/read-through	upstream	downstream	0	0	5	5752	0	low	.	.	mismatches(5)	CTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGaGACTTtATCAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGA...|...GTGCCCTGGCTCCC	.	.	.
TALL049	ST6GALNAC4	RP11-203J24.8	-/+	+/+	9:127916161	9:127940395	exon	splice-site	deletion/read-through/3'-3'	downstream	upstream	2	2	0	54	17	low	.	.	duplicates(1),mismappers(1)	CTGCCCCCCACATCCAGCTCTCTCTCTCACAGCCCGGGGCTTCTGCAGTAAAGACAAGAGCGGCTGAACTGAACTTCACAACCCCAGTTCCACGTAGGCTTTGCCTG|TTTTCTCCCCAGGAATCTGGAACGATGAAGGTGATGATTGTGCCTGTGGCCAAGACCGGGAGAACCCTGGATCCCTACACCTTCCCCACCCCTGGAATGTCACTATACATATCTGACTTCTTCTGATGTTGCCTTTGACCCTAAAGTCAATATGATAAAGTAACAAG___AAG...CAACATTCTGTTAGAAAGGAGGGGAGTCAAAGAAAAAAACACCCCTCCGCCCATCTCCTTATCACCTCCCTAAAGACAGAGGAGAACATGGACACCCTCCATCCTGATAGACATGCCATGTGGTCAGTTTGTG	.	.	.
TALL049	RP11-210H10__A.1	ASF1A	+/+	+/+	6:118759123	6:118894251	intron	5'UTR	deletion/read-through	downstream	upstream	0	0	4	15	98	low	.	.	duplicates(1),mismappers(1),mismatches(1)	ATTTATTTAAAGTTTTTTTTTCCCCAACATAGGGCTTAATTTCTTTTGTGATTTTAAAAATAATACATGACCAGAGTAAGAAAATACACACATAAAAAGCAGAATTACATAAGTTAGGAAGTGAAACTCATTCCCTTAAGAAACATACAGCTTCAGATGCCCgCgCT...|...GCTCCCGTGTAAATAAAAAGAGGAAAAAAGTTTCTCAAGTCGCCGCTGCACGACGTCTGGCCGGCGCTGGAGCGGGGGTCTGCGCTCTCCCGAGCGGCCGCGCGCTGGACTTTATTGTGCCGCAACCAGC...GGATAACCCTTCTCCTTTCTACAACCCGTTCCAGTTCGAGATCACCTTCGAGTGCATCGAGGACCTGTCTGAAGGTGAGTGCGGCGCCCGTGCGCCCGGGCTGTCAGTTGCGGGCTGCAGACGTTGAAAGTTT	.	.	.
TALL049	NFATC3	SLC7A6	+/+	+/+	16:68191775	16:68266593	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	157	74	low	.	.	duplicates(3),low_entropy(1),mismappers(1)	CCAGAATGCATTCTGGACAGCACTCAACTCAAGCACAAAGTACGGGCCAGGGGGGTCTTTCTGCACCTTCATCCTTAATATGTCACAGTTTGTGTGATCCAGCGTCATTTCCACCTGATGGGGCAACTGTGAGCATTAAACCTGAACCAGAAGATCGAGAGCCTAACTTTGCAACCATTGGTCTGCAGGACATCACTTTAGATGATG|AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTTCTTGACAG___GCCACAGCAAAC	out-of-frame	RMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIKPEPEDREPNFATIGLQDITLDD|efmwprqtsgirpccrglhfllstgpiyeevayesvmfayfltghsk	.
TALL049	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	9	6	low	.	.	duplicates(3)	GGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCT...CCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGG	out-of-frame	QSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseels	.
TALL049	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23232293	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	53	14	low	.	.	duplicates(2)	TGACAACAAAGGAGATTGTGACATATTGCTGGGCCTAACACTAAGGTGATGTTAGTTATTTGCTTTGGCTGTGCCCTTGGAAGGCATTGAGACATACTGCTGTGCCCAGCACCAAGATGAT___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTGTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGAACGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGG___GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGCAAAGAGCCCTGGAATATGGAGAGACATGAGATGGTGGCCAAACC	.	.	.
TALL049	RP11-15H20.6	ZNF724P	-/-	-/-	19:23274076	19:23232293	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	70	14	low	.	.	.	CTGCTGTTTTACGTCCTgCACCTCGGGAGCCCCCGGTGACTGTCACAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGATGCCAGGACATCCTGGAAGCTGGGAAAAG|GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTGTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGAA	.	.	.
TALL049	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23231361	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	53	17	low	.	.	mismatches(1)	AGGTTCTGACAACAgAGGAGATTGTGACATATTGCTGGGCCTAACACTAAGGTGAgGTTAaTTATTTGCTTTGGaTGTGCCCTTGGAAGGCATTGAGACATACTGCTGTGC...ACCAtGATGAT___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAtATCACTGGACCCAGCACCTAG|GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGCA	.	.	.
TALL049	ZNF644	RP4-665J23.1	-/-	-/-	1:90918052	1:90832196	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	129	7	low	.	.	duplicates(2)	GAATTTCTTAAATGAATATGATGAAACAAAACCAGAACTGCCCAGTGGGAAAAAGAATCAGTCTCTTACACTCATAGAACTTCTTAAAAATAAAAGGATGGGAGAAGAAAGGAATTCTGCTATTTCTCCTCA...ATCAAGGTCAAGATCTGGAAGCAAGAAGAAAATGCTAACATTACCTCATGGTGCTGACGAGGTTTACATTCTCCGATGCAG|GCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGGGGGCAATTAGTCACCACCCCACGGCGCTGCTGAGGACAGCACGGCAGCAGACAAGTCAGGCCCATGAG	out-of-frame	SRSRSGSKKKMLTLPHGADEVYILRCr|llm*	.
TALL049	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	3	0	35	3	low	.	.	duplicates(1)	CTTGTTCGTCCTTTCACcGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCA	.	.	.
TALL049	SAMD8	VDAC2	+/+	+/+	10:75164740	10:75211134	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	204	608	low	.	.	duplicates(3)	GGAAGACTATACTGAGTTGTcTATATGTTTTTATAGTATTTGGATTTcCATCTTTCATTATGGTTATAGTCCATGAGCGAGTGCCTGACATGCAGACCTATCCACCcCTCCCAGATATATTCTTAGACAG___CGT...CATGATTCTGTGCTATATTTGGCTCCTGGTTCTTCTTCTTCACAAGCACAG|ATTCCCCTCTTCCCGCGGCCTCGCCATGGCGACCCACGGACAGACTTGCGCGCGTC___CAATGTGTATTCCTCCATCATATGCT...AGATAgTaTCAACAAAGGATTTG___GTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCTTGCAGTGGCGTG___GAATTTTCAACGTCCGGTTCATCTAATACAGACACTGGTAAAGTTACTGGGACCTTGGAGACCAAATACAAGT	in-frame	MILCYIWLLVLLLHKHr|fpssrglaMATHGQTCARPMCIPPSY	.
TALL049	SAMD8	VDAC2	+/+	+/+	10:75168658	10:75211134	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	141	608	low	.	.	duplicates(3)	CTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGGACAACACCTGCAGTGTACTcGAAAG|ATTCCCCTCTTCCCGCGGCCTCGCCATGGCGACCCACGGACAGACTTGCGCGCGTC___CAATGTGTATTCCTCCATCATATGCTGACCTTGGCAAAGCTGCCAGAGATATTTTCAACAAAGGATTTG___GTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCTTGCAGTGGCGTG___ATATCACAATTTCTG	out-of-frame	FTMFVTSLSVPGQHLQCTrK|iplfprprhgdprtdlrasnvyssiic*	.
TALL049	CBFA2T3	SLC7A5	-/-	-/-	16:88941020	16:87841155	splice-site	splice-site	deletion	upstream	downstream	1	2	0	95	987	low	.	.	.	TTTGTTCCCGCGCGGGGTGGCCGGAGCCGAGTCCCCGGCATGGCCCAGGCGGCCGCCCCGCGCGCCCCAGCCCCGCCGCGCGCCTGAGCCCGGTGCGGCGCCAGAAGACAGCGCGCAGCCGCCCCTGAGTCGT...GGAGCAGCGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGAACATTGTGCTGGCATTATACAGCGGCCTCTTTGCCTATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTGGCCATCATCATCTCCCTGCCCATCGTGACGCTGGTGTACGTGCTGACCAACCTGGCCTACTTCACC	.	.	.
TALL049	BANP	SLC7A5	+/+	-/-	16:88018667	16:87841155	splice-site	splice-site	inversion	downstream	downstream	2	1	0	93	987	low	.	.	duplicates(2)	CGGGGAGAGCGGCTCGGAGGCCAGCGACTCTGTGTCCAGCTGTGGGCAGGCGGGCAGTCAGAGCATCGGGAGCAACGTCACGCTCATCACCCTGAACTCGGAAG___AGGACTACCCCAATGGCACCTGGCT...TGCGGGTACGCTGCGCCATCATCCCCTCCGACATGCTGCgCATCAGCACCAACTGCCGCACGGCCGAGAAGATGGCGCTaACGCTGCTGGACTACCTCTTCCACCGCG...AACCTCTCGGGGCAGGGCAAGCACGGGAAGAAGCAGCTGGACCCGCTCACCATCTACGGCATCCGGT|GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGAACATTGTGCTGGCATTATACAGCGGCCTCTTTGCCTATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTGGCCATCATCATCTCCC	in-frame	NLSGQGKHGKKQLDPLTIYGIR|cDVSNLDPNFSFEGTKLDVGNIVLALYSGLFAYGGWNYLNFVTEEMINPYRNLPLAIIIS	.
TALL049	MCM9	RP11-210H10__A.1	-/-	+/-	6:118894251	6:118759123	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	98	15	low	.	.	mismappers(1)	CTCGGGAGAGCGCAGACCCCCGCTCCAGCGCCGGCCAGACGTCGTGCAGCGGCGACTTGAGAAACTTTTTTCCTCTTTTTATTTACACGGGAGC...|...AGcGcGGGCATCTGAAGCTGTATGTTTCTTAAGGGAATGAGTTTCACTTCCTAACTTATGTAATTCTGCTTTTTATGTGTGTATTTTCTTACTCTGGTCATGTATTATTTTTAAAATCACAAAAGAAATTAAGCCCTATGTTGGGGAAAAAAAAACTTTAAATAAAT	.	.	.
TALL049	DUSP18	SLC35E4	-/-	+/-	22:30654117	22:30657808	intron	intron	duplication/5'-5'	upstream	downstream	0	1	1	7	9	low	.	.	mismappers(1)	GTGACAGCCACCCTGGAGGAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGcATAAGAAACAGCTCATGGGATGGCCGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCGGAGGCGGGC...GGTGAAACCCgGTCTCTACTAAAAAAATAAAAAATAAAAATAGCCGGGCGTGGTGGCGGGCGCCCGTAG|CCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCACACCCGGCTAATTTTTTGTACTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATTGTCTCGATCTCCTGACCTCGTGATCCACCTGACTtGGCCTCCCAAAGTACTGGGATTACAGGCATGAGCCACCGCGCCTGGCCTATTTTTTAAATCTTTAAAAAATTTTTTTAGAGACAGCGTCTCACCATATTTCCCAGGCTGGTCTCAAATTCCTGGGCTCAAGTGATC	.	.	.
TALL049	GRWD1	BAX(951),CTD-2639E6.9(1226)	+/+	./+	19:48455108	19:48962749	3'UTR	intergenic	deletion	downstream	upstream	0	0	2	38	3	low	.	.	.	CCCCTCTCTCTGGGTCTCTGTCCCCC...CCCCTCTCTCTGGGTCTCTGTCC...|...CCTCTTTCCACCCCTGGCACCCAGACCTCTGGCCCCCTCTCTCTGGGTCTCTGTCCCCCCCTCTGGATCTCTGGCCCCCCATCTCTCTCTGGGTCTGTCCCCC	.	.	.
TALL049	PXDN(23260),MYT1L(21001)	PXDN	./-	-/-	2:1768112	2:1693134	intergenic	splice-site	deletion/read-through	upstream	downstream	1	0	1	5	61	low	.	.	duplicates(1),mismappers(1)	GGCGCTTAGAAGAGGAGCTCAAAGGTGGCCTGGCGTCAGGGGCTGGAGGGCCTTTGACAGAGGCCGGGACTGAGGCTACAGCATCATCGGAGCGCTGGCCTTGGAAAGA|AGATCTTCGCTTTAACAGAATCAGAGAGATCCAACCTGGGGCATTCAGGCGGCTGAGGAACTTGAACACATT___GCTTCTCAATAATAATCAGATCAAGAGGATACCTAGTGGAGCATTTGAAGACTTGGAAAATTTAAAATATCT___CTATCTGTACAAGAATGAGATCCAGTCAATTGACAGGC	.	.	.
TALL049	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511223	7:23356266	exon	intron	deletion	downstream	upstream	0	0	2	4162	6	low	.	.	duplicates(1),mismappers(2),mismatches(5)	.	.	.	.
TALL049	RP11-1026M7.2	KIF14	+/+	-/+	5:177793529	1:200558977	exon	intron	translocation/5'-5'	downstream	upstream	0	0	2	6	3	low	.	.	.	TTTATGAAAATGGCAGCTGGGACGTGGAGGAAGAGCCACCTGCCAGTTGGACTGGAGCCACAAGCTGCACTGTGAACCTGGTCACTTGGCACCAATGCCGTCGGCCCGTGGGTATCTGAGGGGACCTGCCAAT...|...GTTTCCATTCTTAGAAGAGGAGAAGACTAAACAAAGCTAAGGAAGAAAATGACAACCAGAAAGCGAACACTAGGTGTCACTACCACACTCCACTCTCTGCTTAGGAGTTTACAGACTGAATTCTTGAAAATAG	.	.	.
TALL049	NDUFA11	FUT3	-/-	-/-	19:5896453	19:5844851	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	457	4	low	.	.	low_entropy(1)	CGCGGCTGCCCTTGCGCTTCCCGAGCTGGCGGGGTCCGTGGTGCGGGATCGAGATTGCG...CACCGCAAAGCCTACAGCACCACCAGTATTGCCAGCGTCGCTG___GCCTGACCGCCGCTGCCTACAGAGTCACACTCAATCCTCCGGGCACCTTCCTTGAAGGAGTGGCTAAGGTTGGACAATACACGTTCACTGCAG___CTGCTGTCGGGGCCGTGTTTGGCCTCACCACCTGCATCAGCGCCCATGTCCGCGAGAAGCCCGACGACCCCCTGAACTACTTCCTCGGTGGCTGCGCCGGAGGCCTGACTCTGGGAGCACGCA|ATACTCTGACCCATGGATCCC	out-of-frame	HRKAYSTTSIASVAGLTAAAYRVTLNPPGTFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLTLGAR|ntlthgs	.
TALL049	EEF1A1P6	DNAH11	-/-	+/-	7:22510710	7:21900154	exon	intron	deletion/5'-5'	upstream	downstream	0	0	2	1163	2	low	.	.	duplicates(2),low_entropy(3),mismappers(1),mismatches(17)	GAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGAC...|...AAAGGTTCCC	.	.	.
TALL049	NBEAL1	RAPH1	+/+	-/+	2:203191045	2:203396077	exon	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	146	5	low	.	.	low_entropy(1)	CATTGCCAAGGCAACGGGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAGGTGGTGCCTTCTGCCTCTGCCCTGATCATCAAAGCCCTCAAGGAACCACC...|...ACACAGTGGGAAC	.	.	.
TALL049	STAT6	CDK8	-/-	+/+	12:57096939	13:26380022	CDS	intron	translocation	upstream	upstream	0	0	2	174	8	low	.	.	.	GTCAACGTGTTGTCAGCCTTCCAGGA___GCCTCACCTGCAGATGCCCCCCAGCCTGGGCCAGATGAGCCTGCCCTTTGACCAGCCTCACCCCCA___GGGCCTGCTGCCGTGCCAGCCTCAGGAGCATGCTGTGTCC...|...GCGAAAACATGAAAACATGCATGCAGCAGGAGCAGTGGGATGCAGGGGAAGGCAGGGCTGCGGGTGATGGGAAGCAGCCTGCCAGGCGCCTTGCATCCCATCACAAGGACTGGACCTTATGTAGGAGTGGGGGA	.	.	.
TALL049	PAPOLA	GLRX5	+/+	+/+	14:96502600	14:95543947	splice-site	splice-site	duplication	downstream	upstream	0	1	1	691	768	low	.	.	.	GCTTAAAGCGGCGGGAGCGGTGCGGGAGAGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCTCCCTCCCGCCTCAGTGGATCATGCCCAGGGCGGCAGCGGCGGCGGTTGCGGGGGGGAAGTGACTGGGCGGTGCCGGCGCCGGAGACGATGCCGTT|GCATTAAAGACTATTCCAACTGGCCCACCATCCCGCAAGTGTACCTCAATGGCGAGTTTGTAGGGGGCTGTGACATTCTTCTGCAGATGCACCAGAATGGGGACTTGGTGGAAGAACTGAAAAAGCTG...CCGCCCTTTTAGATGAAAAGAAAGACCAAGACTCCAAGTGAGGGCGGCCAAGTCCTCGCTGAGCAGAGAGGGAGCCGTTCATGTCAGAGACTCACTGCCAGAAAAGCCTTACCCATTTTGGTTTTCAC	out-of-frame	MPl|h*	.
TALL049	NOTCH1	RALGDS	-/-	-/-	9:136544024	9:133112152	splice-site	splice-site	deletion	upstream	downstream	0	2	0	71	96	low	.	.	.	CGAG___GCCCGCGATGCTCCCAGCCCGGTGAGACCTGCCTGAATGGCGGGAAGTGTGAAGCGGCCAATGGCACGGAGGCCTGCGT|AGCTCCACGCAGGAGATCGGTGAGGAGCTGATCAACGG...ATGAGACTTGCAAGGTGCGGACCGTGAAGGCTGGCACGCTGGAGAAGCTGGTGGAGCACCTGGTGCCAGCCTTCCAGGGCAGCGACCTCTCCTACGTCACCATCTTCCTGTGTACCTATAGAGCCTTCACC	out-of-frame	RGPRCSQPGETCLNGGKCEAANGTEACv|aprrrsvrs*	.
TALL049	OSBPL5	CD81	-/-	+/+	11:3165216	11:2390412	splice-site	splice-site	inversion	upstream	upstream	0	2	0	74	785	low	.	.	.	CCCCCGCGCGCCCGGCCGGCCCGGAGCACCGAGCTCGCGGCACGGTAGGAG|CTGGCTGGAGGCGTGATCCTGGGTGTGGCCCTGTGGCTCCGCCATGACCCGCAGACCACCAACCTCCTGTATCTGGAGCTGGGAGACAAGCCCGCGCCCAACACCTTCTATGTAG___GCATCTACATCCTCATCGCTGTGGGCGCTGTCATGATGTTCGTTGGCTTCCTGGGCTGCTACGGGGCCATCCAGGAATCCCAGTGCCTGCTGGGGACG___TTCTTCACCTGCCTGGTCATCCTGTTTGCCTGTGAGGTGG	.	.	.
TALL049	CD81	OSBPL5	+/+	-/-	11:2377615	11:3129169	splice-site	splice-site	inversion	downstream	downstream	0	1	0	489	108	low	.	.	.	CGCAGGCCGCCCGCCGCCCGCGCCGCCATGGGAGTGGAGGGCTGCACCAAGTGCATCAAGTACCTGCTCTTCGTCTTCAATTTCGTCTTCTGG|AAGCCCCCGAGCGCCCACAGCATGAAGGAGGAGGCCTTCCTCCGGCGCCGCTTCTCCCTGTGTCCACCTTCCTCCACCCCTCAGAAAGTCGACCCCCGGAAGCTCACCCGGAACTTGCTCCTCAGCGGAGACAATGAGCTCTACCC	in-frame	MGVEGCTKCIKYLLFVFNFVFW|kppsahsMKEEAFLRRRFSLCPPSSTPQKVDPRKLTRNLLLSGDNELY	.
TALL049	EDF1	DAZAP1	-/-	+/+	9:136862906	19:1434737	splice-site	splice-site	translocation	upstream	upstream	1	0	1	1635	798	low	.	.	.	CTGCACCATGACAGGGTGACCCTGGAGGTGGGCAAGGTGATCCAGCAAGGTCGGCAGAGCAAGGGGCTTACGCAGAAGGACCTGGCCACG___AAAATCAATGAGAAGCCACAGGTGATCGCGGACTATGAGAGCGGACGGGCCATACCCAATAACCAGGTGCTTGGCAAAATCGAGCGGGCCATTG|CAGGTTACGGGCAGGACTTGAGTGGCTTCGGACAGGGCTTCTCAGACCCCAGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTTTGGACGAGGGCAGAACCACAACGTGCAAGGGTTCC	in-frame	LHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAI|aGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGF	.
TALL049	SGTA	REXO1	-/-	-/-	19:2783233	19:1828631	splice-site	splice-site	deletion	upstream	downstream	1	1	0	175	121	low	.	.	duplicates(4)	GCCGGGGCCGGGCGGCACCGCGGTGCGCAAGCGCAACCGTCGGTGGGTCGGGGATCGGTCGCCTGAGAG|GGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCT...CGTGCGCAGTGAGGTGGAGCTGGAGCAGCGGCGCTACCGGGAGCTGCTGGAGACGACCCGTGAGCACCGCTCCGCCGAGGCCCCCGCCCTGGCGCCCCGCGGCCCCAACGCCAGCCCCACTGTGGGCCaGGAC	.	.	.
TALL049	CSNK1D	FOXK2	-/-	+/+	17:82273306	17:82601303	splice-site	splice-site	inversion	upstream	upstream	0	2	0	796	251	low	.	.	.	CCGGGAGGGCAGGAGCGAATCGGGCCGCCGCCGCCATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGCTCCTTCGGAGACATCTATCTCG|CCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAAGCGCCACAACGGTGACCAGC...CGGATCAAGACAGAAGACGGCGAGGGCATCGTCATTGCCCTGAGCGTGGACACGCCACCGGCAGCCGTAAGGGAAAAGGGTGTCCAGAACTAGCGACCGGGAGAGCTTTTCTTTAACGATATCAACTCTGTGGTGCCAAAAGGAGACGCGGCCTCCCGCCAGCACTCGGGGGTGCAGGGCCCTGTGGTTGGACTTCAC	in-frame	MELRVGNRYRLGRKIGSGSFGDIYL|aAASPLHMLATHASASASLPTKRHNGDQ	.
TALL049	CSNK1D	FOXK2	-/-	+/+	17:82273306	17:82563354	splice-site	splice-site	inversion	upstream	upstream	0	1	0	796	274	low	.	.	.	GCAGGAGCGAATCGGGCCGCCGCCGCCATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGCTCCTTCGGAGACATCTATCTCG|GTGCACATTCAGGTTCCCGAGCACAAACAT...GCCCTGTCCAGCGAGAAGAGAGAGAAGCAGGAGGCGTCTGAGTCTCCAGTGAAGGCCGTACAGCCACACATCTCGCCCCTGACCATCAACATTCCAGACACCATGGCCCACCTCATCAGCCCTCTGgCCTCC	out-of-frame	MELRVGNRYRLGRKIGSGSFGDIYL|gahsgsraqt	.
TALL049	ZNF736	ZNF680	+/+	-/-	7:64336385	7:64522500	splice-site	splice-site	inversion	downstream	downstream	1	0	1	246	193	low	.	.	.	GTGACTCTACTATAGCTTCTGTTATCCTGTGACCTGCAGGTACTGGGAGATCCATAGGGAGGACGGCGcAACATCTGGAGGCTGGGAAATG___GGAGTGTTGACATTCAGGGATGTGGCTGTAGAATTCTCCCCAGAAGAGTGGGAATGCCTGGACTCTGCTCAGCAGCGTTTGTATAGGGATGTGATGTTAGAGAACTATGGAAACCTGGTCTCCTTGG|TTATATATTCTCATTTCACTGAAGACCTTTGGC...AATGTTTGAGAACTACCCAGAGCAAAATATTTCAATGTGATAAATACGTGAAAGTCTTTCATAAATTTTCAAATTCAAACAGTCATAAGAAAAGAAATACTGGAAAGAAGGTTTTCAAATGTAAAGAATGTGG	in-frame	MGVLTFRDVAVEFSPEEWECLDSAQQRLYRDVMLENYGNLVSL|vIYSHFTEDLW	.
TALL049	LDLRAD4	ZADH2	+/+	-/-	18:13217772	18:75202342	splice-site	splice-site	inversion	downstream	downstream	1	1	0	35	146	low	.	.	.	CCTGGCCGCGCGCCGGGTCCCCACCGCGGAGTGGGAAGGAGGAGGAGAGACTGGAGGAGTTGGAGACAGACACAGCCGCGGCGCGCAGTCACGGCTGGAGACAGACGGCGGCGACGGCGGCGGGAGGCGGGAC...CCCCGGCGGCCGCAGCGCCGCGTCCCCTCTCTCCCCGCGCTGAGGCTGCGGACCGGGCCCGGCGGGATTAGC|AGATTTGTTGGTGTTAACGCATCTGACATCAACTATTCAGCAGGCCGCTATGACCCCTCAG	.	.	.
TALL049	BCL11B	SETD3	-/-	-/-	14:99231345	14:99465813	splice-site	splice-site	duplication	upstream	downstream	1	0	1	167	154	low	.	.	.	CACGAAAGGCATCTGTCCCAAGCAGGAGAACATTGCAG___GGCCGTGCAGGCCTGCCCAGCTGCCAGCGGTGGCCCCCATAGCTGCCTCCTCCCACCCTCACTCATCCGTGATCACTTCACCTCTGCGTGCCCTG...CCCGCCCTGCCTCCCCCTGCCGTGCTGCAGCGCGCGCCCGGTCTCGGGTGACGGGACTCAGGGTGAGGGTCAGACGGAGGCTCCCTTTGGATGCCAGTGTCAGTTGTCAG|TCAGAAAAATGGGTAAGAAGAGTCGAGTAAAAACTCAGAAATCTGGCACTGGTGCTACAGCAACTGTGTCACCAAAGGAAATCTTGAACCTGACCAGTGAGCTGCTGCAGA___AATGCAGCAGTCCGGCGCCTGGCCCAGGAAAAGAGTGGGAAG	in-frame	PPCLPLPCCSARPVSGDGTQGEGQTEAPFGCQCQLS|vrkMGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWE	.
TALL049	LINC00976(146710),LINC00977(103756)	LINC00977	./-	-/-	8:129112711	8:129223370	intergenic	splice-site	duplication	upstream	downstream	1	0	1	14	58	low	.	.	duplicates(1)	GTGTAATGATTATTATGAAATTCGTGAACTCGACAGCCAAAGAAACATAGCTGAGTAAATATAACCTGTCTGCCTCTAGCTGCATAGCTGTGTGGTCACTAAATTTCACTCCTGGCCTGTATT...TGAAATGTTTGGAACTTGGCTTTCAATTACCTGTGTCTCTTGGTGCTTTGAGTTGCTCTATGGGAAAGACTTCTTTCATTCTCAAAGGTGA|GCATCTACTTGTTTCCAAAGTTATTTGGGTCAGCATTTTCC	.	.	.
TALL049	MOB1B	GRSF1	+/+	-/-	4:70902550	4:70836314	splice-site	splice-site	inversion	downstream	downstream	2	0	0	232	383	low	.	.	.	GCGCTACCCACTTCCGCCCCCTCCgCCTGCCATTGGAACTAGCTGAGCCGAACTAGTTGCGGCCACCGAGCAGCCGGCTCTCGGCACCTCCTCCTCCGCCTCCCTGTCTCCTGTTCCATTCGCCTTTCCTCTTCTTTCCTGGCCCACGCCGCTCCGAGGCCTCGCGACCGCCGAGCCTGCAGCCTGCCCCGCGGCCAACATGAGCTTCTTGTT|GAGTCCAAAACTACTTACCTGGAAGACCTTCCACCACCCCCTGAGTATGAATTGGCCCCGTCCAAGTTAG	out-of-frame	MSFLl|spklltwktfhhplsmnwprps	.
TALL049	BAIAP2	UBE2I	+/+	+/+	17:81035308	16:1324730	splice-site	splice-site	translocation	downstream	upstream	0	1	0	96	876	low	.	.	.	CGGCTCACGGAAAATGTCTATAAG|CCAAAACAGAGTGGAGTACGAGAAAAGGGTCCGAGCACAAGCCAAGAAGTTTGCGCCCTCATAAGCAGCGACCTTGTGGCATCGTCAgAAGGAAGGGATTGGTTTGGCAAGAACTTGTTTACAACATTTTTGCAAATCTAAAGTTGC	out-of-frame	RLTENVYK|pkqsgvrekgpstsqevcalissdlvassegrdwfgknlfttflqi*	.
TALL049	BAIAP2	UBE2I	+/+	+/+	17:81057967	16:1315654	splice-site	splice-site	translocation	downstream	upstream	0	1	0	64	891	low	.	.	duplicates(1)	ATGCAGCCAAAGGCTACTTTGACGCCCTGGTGAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCTCCAAAGAACTCG|ACTCCGTGGGAAGGAGGCTTGTTTAAACTACGGATGCTTTTCAAAGATGATTATCCATCTTCGCCACCAAAAT___GTAAATTCGAACCACCATTATTTCACCCGAATGTGTACCCTTCGGGGACAGTGTGCCTGTCCATCTTAGAGGAGGACAAGGACTGGAGGCCAG	out-of-frame	AAKGYFDALVKMGELASESQGSKEL|dsvgrrlv*	.
TALL049	HIPK3	QSER1	+/+	+/+	11:33287511	11:32927157	splice-site	splice-site	duplication	downstream	upstream	0	1	0	106	24	low	.	.	.	CGGCCAGTCATGTATCAAAGACTGTTTGTTCAACATATCTACAATCTCGGTACTACAG|TTTAAGCTATGAAGAAGGACATCCCTCACACTCTGAAACAGATCTCCTTCAGAGACAGAGTTTTGCAGC...CAGCATCCCACCACCTTCAGCAATAGAAACTTTGCTACCACTTCACCTTTGGTGCTTCAGGATTCAACTTTTAACACTACATCAAATGGAATTTTAAGTCATCATGACCCTTTGCTACAAATCAAGACTTCCC	out-of-frame	ASHVSKTVCSTYLQSRYYs|lsyeeghpshsetdllqrqsfa	.
TALL049	FAM19A5	GRAMD4	+/+	+/+	22:48646746	22:46658187	splice-site	splice-site	duplication	downstream	upstream	0	1	0	18	62	low	.	.	.	GGAGGACGATCGCCCGGCAGACCGCCCGCTGTGCGTGTAGAAAGGGGCAGATCGCCGGCACCACGAGAGCCCGGCCCGCCTGTGTGGtCG|AGGAGGAGCTCCGGAAGCTGCGAGAAGAAACCAACGC...CGAGGAGAACACTGTGGAGACAGAGGAACCCCTGAGCGCCCGCAG___GTTAACTGAAAATATGAGACGGCTCA___AGCGCGGTGCCAAGCCGGTCACTAACTTTGTGAAGAACCTCTCTGCCTTATCCGAC	in-frame	RTIARQTARCACRKGQIAGTTRARPACVv|eEELRKLREETN	.
TALL049	FAM19A5	GRAMD4	+/+	+/+	22:48489704	22:46658187	splice-site	splice-site	duplication	downstream	upstream	0	1	0	16	62	low	.	.	duplicates(1)	CTCAACTTTCTGGGCGTTCATGATCCTGGCCAGCCTGCTCATCGCCTACTGCA|AGGAGGAGCTCCGGAAGCTGCGAGAAGAAACCAACGCGGAGATGCTGCGGCAGGAGCTGGACCGCGAGCGGCAGCGGCGG...CCGAGGAGCAGATGGCTCAGCAGCCCCCAAAAGGGCAGGCCCAGGCCAGCAATGGAGCAG___AGCGCCGGAGCCAGGGGCTGTCCTCGCGCCTGCAGAAGTGGTTCTACGAGCGGTTcGGGaAG	in-frame	STFWAFMILASLLIAYC|kEELRKLREETNAEMLRQELDRERQR	.
TALL049	TOLLIP	CD81	-/-	+/+	11:1309466	11:2390412	splice-site	splice-site	inversion	upstream	upstream	1	0	0	95	785	low	.	.	.	GCGGGGCGCGGCGGCTGTCAGCTGACTGTGGCGGCGGCGGCCTCGAGGTGACAACTGTCTCCGTCGCAGGCTCCGGCGGGGGCGCAGGAGGTCGCCCGGCGCGTCACTGTCGGGTCGGCGAGCCACGGGGGCCGCCGCAGCACCATGGCGACCACCGTCAGCACTCAGCGCGGGCCG|CTGGCTGGAGGCGTGATCCTGGGTGTGGCCC	in-frame	MATTVSTQRGP|LAGGVILGVA	.
TALL049	TOLLIP	CD81	-/-	+/+	11:1309466	11:2394972	splice-site	splice-site	inversion	upstream	upstream	0	1	0	95	868	low	.	.	.	CCGGCGCGTCACTGTCGGGTCGGCGAGCCACGGGGGCCGCCGCAGCACCATGGCGACCACCGTCAGCACTCAGCGCGGGCCG|TTCTTCACCTGCCTGGTCATCCTGTTTGCCTGTGAGGTGGCCGCCGGCATC...ATGTGAAGCAGTTCTATGACCAGGCCCTACAGCAGGCCGTGGTGGATGATGACGCCAACAACGCCAAGGCTGTGGTGAAGACCTTCCACGAGACG___CTTGACTGCTGTGGCTCCAGCACACTGACTGCTTTGAC	in-frame	MATTVSTQRGP|FFTCLVILFACEVAAG	.
TALL049	CTBP1	NAPG	-/-	+/+	4:1228199	18:10530770	splice-site	splice-site	translocation	upstream	upstream	1	0	0	283	162	low	.	.	duplicates(1)	GCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG|CCTGAAAACTGGTTTTTTAAAATGGAAGCCAGATTATGACAGTGCCGCTTCTGAATATGGAAAAG	out-of-frame	ALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDL|a*	.
TALL049	NAPG	CTBP1	+/+	-/-	18:10526158	4:1216205	splice-site	splice-site	translocation	downstream	downstream	0	1	0	154	432	low	.	.	.	CGGAGGAAGAGGCAGGGTCACCCTCTCTCCACGTCAGAGACCTGACTGTGGAGATGGCGGCTCAGAAGATAAACGAGGGGCTGGAACACCTCGCCAAAGCAGAGAAATA|GTCGCGTGGGGCAGGCAGTGGCGC...CAACGTGCTCTTCTACGACCCTTACTTGTCGGATGGCGTGGAGCGGGCGCTGGGGCTGCAGCGTGTCAGCACCCTGCAGGACCTGCTCTTCCACAGCGACTGCGTGACCCTGCACTGCGGCCTCAACGAGCAC	out-of-frame	MAAQKINEGLEHLAKAEK*|srgagsg	.
TALL049	BAHCC1	RNF126	+/+	-/-	17:81399917	19:652884	splice-site	splice-site	translocation	downstream	downstream	0	1	0	131	241	low	.	.	.	GTCGCCGTTGCCCATGGCTTCGCACACAG|GATTATATCTGTCCAAGATGCGAGTCTGGTTTTATCGAGGAGCTTCCGGAAGAGACCAG___GAGCACAGAAAATGGTTCTGCCCCCTCCACAGCTCCCACAGACCAGAGCCGGCCACCGTTGGAG___CACGTGGACCAGCACCTGTTCACGC	out-of-frame	SPLPMASHT|glylskmrvwfyrgasgrdqehrkwfcplhsshrpepatvgargpapvh	.
TALL049	BANP	GSE1	+/+	+/+	16:88018667	16:85648552	splice-site	splice-site	duplication	downstream	upstream	0	1	0	93	160	low	.	.	duplicates(1)	CTGGACCCGCTCACCATCTACGGCATCCGGT|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCcCACCCAAGCGCGTGCCC...ATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGA	in-frame	LDPLTIYGIR|wSSLSSESSPVSSPATNHSSPASpPKRV	.
TALL049	BANP	GSE1	+/+	+/+	16:88018667	16:85654278	splice-site	splice-site	duplication	downstream	upstream	0	1	0	93	161	low	.	.	.	AGAAGCAGCTGGACCCGCTCACCATCTACGGCATCCGGT|GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCT...GTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCtAGGACTACCTGAGAAGCTTCCGGCCCTACCACACCACCGACGACCTCCGCATGTCC	out-of-frame	KQLDPLTIYGIR|*	.
TALL049	GSE1	BANP	+/+	+/+	16:85613398	16:88018428	splice-site	splice-site	deletion	downstream	upstream	0	1	0	48	88	low	.	.	.	GGTGGCTCCAGCATGTATCAGCCGAGGTGGAGCTGCGGGGCCCTGGCATGAAAG|AGGACTACCCCAATGGCACCTGGCTGGGCGACGAGAACAACCCCGAGATGCGGGTACGCTGCGCCATCATCCCCTCCG...CAACTGCCGCACGGCCGAGAAGATGGCGCTaACGCTGCTGGACTACCTCTTCCACCGCGAGGTGCAGGCTGTGTCCAACCTCTCGGGGCAGGGCAAGCACGGGAAGAAGCAGCTGGACCCGCTCACCATCTAC	in-frame	MK|eDYPNGTWLGDENNPEMRVRCAIIPS	.
TALL049	THOC2	STAG2	-/-	+/+	X:123706858	X:124061224	splice-site	splice-site	inversion	upstream	upstream	1	0	0	74	203	low	.	.	.	GCGGCCGCGGCTGTGGTGGTTCCCGCAGAGTGGATAAAGAACTGGGAGAAATCAGGGAGAGGCGAATT___TTTGCATTTATGTCGGATCCTCAGTGAAAATAAAAGCCATGATAGTTCAACATACAGAG___ATTTCC...ATCATGTAATTAAAGGAAATCTAAAGCATGAACAGGCATCTAATGTTCTTAGTGACATTAGT|TTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGG	in-frame	HVIKGNLKHEQASNVLSDIS|LHEHAAYLVDSMWDCATELLKDW	.
TALL049	STAG2	THOC2	+/+	-/-	X:123961856	X:123611516	splice-site	splice-site	inversion	downstream	downstream	0	1	0	50	259	low	.	.	duplicates(2)	TCCAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGATCTCTCCATCCCTTCCGAGGCCCGACTTCG|GAGTCCAGGCATGATAAAGAAAAGATAGAAAAGAAAGAGAAACGGGACAGTTCAGG...ACAGATAATGAAGACTTTCCATCAAG___GTGAGATCGGACTGGAACTGTTCGGCTGCGACCAGAAATTTATTTTCCTGAGTAAATTGCCGAGAATTAAGAATGAAGAGGGCCATTTGCATCTCCTTAAATTATTC	.	.	.
TALL049	MAEA	PCGF3	+/+	+/+	4:1315600	4:730630	splice-site	splice-site	duplication	downstream	upstream	0	1	0	222	211	low	.	.	duplicates(1)	GGCTACTACAACACGGCTGTCAAGCTGGCGCGCCAGAGCGGCATCGAG|GCGTCACAATGTAGCAGGGACCCCAGGCGTCGTGCTCAG___AAAATGGAAAAAGAGCCAGGGCCGGAAGGAGGGTGCAGAAGCGAGTCCGCGTGCGGAGCCAGGAGGCAGCGTCGCGTGGGAGTGCTGGCCTGAAGCCTCCATGCCCCGGCAGAGGGACGGACACGCGG	out-of-frame	GYYNTAVKLARQSGIE|asqcsrdprrraqkmekepgpeggcrsesacgarrqrrvgvla*	.
TALL049	CSNK1G2	RNF126	+/+	-/-	19:1941418	19:652884	splice-site	splice-site	inversion	downstream	downstream	0	1	0	202	241	low	.	.	.	CGGGGGTCCGCGCTGCGCTGCTGAGGCCGGGCCGGCCGCCCAGACGCTGCCCGCGGGCCCGGCCACGGCGGAGCCAAG|GATTATATCTGTCCAAGATGCGAGTCTGGTTTTATCGAGGAGCTTCCGGAAGAGACCAG___GAGCACAGAAAATGGTTCTGCCCCCTCCACAGCTCCCACAGACCAGAGCCGGCCACCGTTGGAG___CACGTGGACCAGCACCTGTTCACGCTGCCGCAGGGCTACG	.	.	.
TALL049	NCOR2	BCL7A	-/-	+/+	12:124466173	12:122030700	splice-site	splice-site	inversion	upstream	upstream	1	0	0	208	204	low	.	.	.	CAGATCTCTAAGCTGAAGAAGAAGCAG___CAACAGCTGGAGGAGGAGGCTGCCAAGCCGCCCGAGCCTGAGAAGCCCGTGTCACCGCCGCCCATCGAGTCGAAGCACCGCAGCCTGGTGCAGATCATCTACGACGAGAACCGG|GGAGAAGAAATGGGTGACCGTTGGTGACACATCC	out-of-frame	QISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESKHRSLVQIIYDENR|geemgdrw*	.
TALL049	NCOR2	BCL7A	-/-	+/+	12:124419957	12:122030700	splice-site	splice-site	inversion	upstream	upstream	0	1	0	188	204	low	.	.	.	ATCGGCGCCGCGGCAAGAGCCAG|GGAGAAGAAATGGGTGACCGTTGGTGACACATCCCTACGAATCTACAAATGGGTCCCTGTGACGGAGCCCAAGGTTGATGAC___AAAAACAAGAATAAGAAAAAAGGCAAGGACGAGAAGTGTGGCTCAGAGGTG	out-of-frame	RRRGKSQ|geemgdrw*	.
TALL049	HDLBP	ATG4B	-/-	+/+	2:241252957	2:241654546	splice-site	splice-site	inversion	upstream	upstream	0	1	0	472	292	low	.	.	duplicates(1)	GTTCCACAGGCACCTCATTGGGAAGAGCGGTGCCAACA|ATTGGAGGTGGACACAAAGGAAGAGGCAGCCAGACAGCTACTTCAGCGTCCTCAACGCATTCATCGACAGGAAGGACAGTTACTACTCCATTCAC...AG___CGCAAATGGGAGTTGGCGAAGGCAAGTCCATAGGCCAGTGtTACGGcCCCAACACTGTCGCCCAGGTCCTGAA___GAAGCTTGCTGTCTTCGATACGTGGAGCcCCTTGGCGGTCCACATTGCA	in-frame	FHRHLIGKSGAN|nWRWTQRKRQPDSYFSVLNAFIDRKDSYYSI	.
TALL049	HDLBP	ATG4B	-/-	+/+	2:241272761	2:241666645	splice-site	splice-site	inversion	upstream	upstream	0	1	0	95	280	low	.	.	.	CCGGCTTCTCCCGCGCGGGGGGCGAGTAAGCCAGCGGCAGGACCAGCGGGCGGGGGCCCACaA|GAAGGTTGTGCAGGACCAGCGTTCCCTGTGCAGGCGCCAgTGCGTTTCCTGCAGATTCCGACCGGCACTG...GGGGCTCACGGACATCAACGAGGCCTACGTGGAGACGCTGAAGGTGGGTCCTGCCGTGCGGCGCTTGCCCTGAGTCCCCGTCCCCTTCTCCCAGTTCTTAGTCACTTTCAGCGCATCGTCGTCACGTGGCC	.	.	.
TALL049	ERN1	PRKCA	-/-	+/+	17:64129976	17:66732688	splice-site	splice-site	inversion	upstream	upstream	1	0	0	151	238	low	.	.	duplicates(1)	CCGCTGAGGCTCGGTCACCGCCTCGCTGTCGTCGCGGCGCCCCCGCCCCGTCCTCTGTCCGTACCGCCCCCGGAGCCAGGGCCGAGTCCTCGCCATGCCGGCCCGGCGGCTGCTGCTGCTGCTGACGCTGCTGCTGCCCGGCCTCGGG|AAAGCCAAACTTGGCCCTGCTGGCAACAAAGTCATCAGTCCCTCTGAAGACAGGAAACAACCTTCCAACAACC	in-frame	MPARRLLLLLTLLLPGLG|KAKLGPAGNKVISPSEDRKQPSNN	.
TALL049	PTP4A1	SYNCRIP	+/+	-/-	6:63572719	6:85641451	splice-site	splice-site	inversion	downstream	downstream	0	1	0	1008	281	low	.	.	.	CCACAATCTTCAATGAGTAAACATATTCCT|ATCTCTGGAAACATGGCTACAGAACATGTTAATGGAAATGGTACTGAAGAGCCCATGGATACTACTTCTGCAGTTATCCATTCAGAAAATTTTCAGACATTGC...ACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAG___GGCTAGTTGCACATAGTGATTTAGATGAAAGAGCTATTGAAGCTTTAAAAGAATTCAATGAAGACGGTGCATTGGCAGTTCTTCAACA	in-frame	PQSSMSKHIP|isgnMATEHVNGNGTEEPMDTTSAVIHSENFQTL	.
TALL049	PARD6G	CTDP1	-/-	+/+	18:80247277	18:79695225	splice-site	splice-site	inversion	upstream	upstream	0	1	0	256	329	low	.	.	.	ATGAACCGAAGTTTTCACAAGTCTCAGACCTTGCGATTCTACGATTGCAGCGCAGTGGAAGTCAAGAGCAAG|AGCGGTTCTGGTGAGGTTGGAAGGATGCAGCCACCCGGTTGTCATGAAAGGCCTGTGTGCTGAATGTGGCCAAGACCTCACCCA___GTTGCAGAGTAAGAACGGGAAGCAGCAGGTGCCGCTGTCCACGGCGACCGTGTCCATGGTGCAC	out-of-frame	MNRSFHKSQTLRFYDCSAVEVKSK|sgsgevgrmqppgcherpvc*	.
TALL049	PARD6G	CTDP1	-/-	+/+	18:80247277	18:79753652	splice-site	splice-site	inversion	upstream	upstream	1	0	0	256	471	low	.	.	.	TTCTGCGGCCCCTGAGGcGCGAGGGCGACGGCGAGGCTGACCGGGGCCGAAACCATGAACCGAAGTTTTCACAAGTCTCAGACCTTGCGATTCTACGATTGCAGCGCAGTGGAAGTCAAGAGCAAG|AGGCCACAAGAGGAAGCTGAATGAAGAGGACGCCGCCAGCGAGTCCAGCAGGGAGTCCAGCAACG	out-of-frame	MNRSFHKSQTLRFYDCSAVEVKSK|rpqeeae*	.
TALL049	CHID1	AP2A2	-/-	+/+	11:899340	11:992503	splice-site	splice-site	inversion	upstream	upstream	0	1	0	98	159	low	.	.	.	AGAACCAGCATTTCGATGGCTTCGTGGTGGAGGTCTGGAACCAGCTGCTAAGCCAGAAGCGCGT|GTGCTGAAGGTCGCCATCCTGGCTGAGAAGTACGCGGTGGACTACACCTGGTATGTGG...TGATCCGAATTGCTGGTGATTACGTGAGTGAAGAGGTGTGGTACCGAGTCATTCAGATCGTCATCAACCGGGACGACGTGCAGGGCTACGCGGCCAAGACTGTGTTCGAG___GCTCTTCAGGCTCCCGCGTGC	out-of-frame	NQHFDGFVVEVWNQLLSQKRv|c*	.
TALL049	CHID1	AP2A2	-/-	+/+	11:899340	11:977095	splice-site	splice-site	inversion	upstream	upstream	1	0	0	98	152	low	.	.	.	GGTGGATGCGAGCTGTCAGGAAGCATGCCAAGGGCCTGCACATAG___TGCCTCGGCTCCTGTTTGAGGACTGGACTTACGATGATTTCCGGAACGTCTTAGACAGTGAGGATGAGATAGAGGAGCTGAGCAAGACCGTGGTCCAGGTGGCAAAG___AACCAGCATTTCGATGGCTTCGTGGTGGAGGTCTGGAACCAGCTGCTAAGCCAGAAGCGCGT|AGACACTATGGACAGCGTGAAG	in-frame	WMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRv|DTMDSV	.
TALL049	PTBP1	BSG	+/+	+/+	19:797505	19:579500	splice-site	splice-site	duplication	downstream	upstream	0	1	0	731	1029	low	.	.	.	ATTCCGGCGCCTCCACTCCGTCCCCCGCGGGTCTGCTCTGTGTGCCATGGACGG|CCGGCACAGTCTTCACTACCGTAGAAGACCTTGGCTCCAAGATACTCCTCACCTGCTCCTTGAATGACAGCGCCAC...GAGTTCAA___GGTGGACTCCGACGACCAGTGGGGAGAGTACTCCTGCGTCTTCCTCCCCGAGCCCATGGGCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGCCAGGGGTACCGGGCACCACCGACTGTCG	out-of-frame	MDg|rhslhyrrrpwlqdtphllle*	.
TALL049	LINC01115	FYTTD1	-/-	+/+	2:868120	3:197756424	splice-site	splice-site	translocation	upstream	upstream	1	0	0	203	1569	low	.	.	.	CAGAGCTCCCGAGTCCACGCAC___CTCGCAGGCAGTGTATTTACATGGAAATTGGATCGAGGCACTGACGTTTAAATCTTGGCTCCTGCTCCTGCCGTCTAGACAAAGGGCGCACCCATTGCCGTCTCAGACACCAGAGGCTCCCACTTGACC|AGATGATATCATCAAGTTGAATCGAAAGGAA	.	.	.
TALL049	NKD2	ZC3H3	+/+	-/-	5:1009560	8:143475585	splice-site	splice-site	translocation	downstream	downstream	0	1	0	762	60	low	.	.	duplicates(2)	CGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GTCCCTGGTGCTGAACCGCCTGCGTCCAGTTGCCAGCGGGGGTGGGAAAGCCCAACCGGGCTCCCCTTGGTGGCGGAGCAAAGGCTACCGCTGCATCGGAGGGGTCCTCTACAAAGTATCTGCCAACAAGCTCTCCAAGACCTCCGGCCAG	out-of-frame	SAYASGRKGAEEAERRARDKQ|vpgaeppasscqrgwesptglplvaeqrlplhrrgplqsicqqalqdlrp	.
TALL049	UVSSA	CTBP1	+/+	-/-	4:1348189	4:1238337	splice-site	splice-site	inversion	downstream	downstream	0	1	0	41	244	low	.	.	.	TTCAGGAGAACCCCGACTAAATCCTGAGAAAATGAAGGAACTGAAGAAAATTTGCAA|GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCATTGCTGGATGGCCGGGACTGCAC...CCATCCTGAAGtgCGTGGCCACTGTGGCCTTCTGgGACGCGCAGTCCACGCAGGAGATCCATGAGAAGGTACCACCACGTGGTCGCCTGGGGCTGGCAGAACCGCACGTTGGGGGGAGTTGGAGGGA	out-of-frame	SGEPRLNPEKMKELKKICk|rptsdherapapaapggiagwpgl	.
TALL049	CD81	SLC7A5	+/+	-/-	11:2377615	16:87841155	splice-site	splice-site	translocation	downstream	downstream	0	1	0	489	987	low	.	.	.	GGGAGTGGAGGGCTGCACCAAGTGCATCAAGTACCTGCTCTTCGTCTTCAATTTCGTCTTCTGG|GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGAACATTGTGCTGGCATTATACAGCGGCCTCTTTGCCTATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTGGCCATCATCATCTCCC	out-of-frame	GVEGCTKCIKYLLFVFNFVFW|vmcpi*	.
TALL049	CD81	SLC7A5	+/+	-/-	11:2390526	16:87841155	splice-site	splice-site	translocation	downstream	downstream	0	1	0	1075	987	low	.	.	.	GGGTGTGGCCCTGTGGCTCCGCCATGACCCGCAGACCACCAACCTCCTGTATCTGGAGCTGGGAGACAAGCCCGCGCCCAACACCTTCTATGTAG|GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGA...TTGCCTATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTGGCCATCATCATCTCCCTGCCCATCGTGACGCTGGTGTACGTGCTGACCAACCTGGC	in-frame	GVALWLRHDPQTTNLLYLELGDKPAPNTFYV|gDVSNLDPNFSF	.
TALL049	TBCD	SLC7A5	+/+	-/-	17:82772507	16:87841155	splice-site	splice-site	translocation	downstream	downstream	1	0	0	90	987	low	.	.	.	CTCGCCTTGACGGGAACCTCCTCACCCAGCCTGGGCAAGCACGAATGTCCATAATGGACCGTATTCTCCAAATAGCAGAG___TCCTACTTGATTGTCAGTGACAAGGCCCGAGATGCAGCTGCTGTCCTTGTGTCCAG|GTGATGTGTCCAATCTAGATCCCA	out-of-frame	RLDGNLLTQPGQARMSIMDRILQIAESYLIVSDKARDAAAVLVSr|*	.
TALL049	TBCD	SLC7A5	+/+	-/-	17:82900731	16:87841155	splice-site	splice-site	translocation	downstream	downstream	0	1	0	630	987	low	.	.	.	CACGCAGCCAATGATAGACCACCTGGTTACCATGAAGATCAGCCACTGGGATGG|GTGATGTGTCCAATCTAGATCCgAACTTCTCATTTGAAtGCACCAAACTGGATGTGGGGAACATTGTGCTGGCATTAT...ATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTGGCCATCATCATCTCCCTGCCCATCGTGACGCTGGTGTACGTGCTGACCAACCTGGCCTACTT	out-of-frame	TQPMIDHLVTMKISHWDg|*	.
TALL049	SUMO3	FAM207A	-/-	+/+	21:44817948	21:44960100	splice-site	splice-site	inversion	upstream	upstream	0	1	0	373	101	low	.	.	.	GGGAGAGCGGCGGGGCCGAGAGCGTGACTCGCCCGCTCCGCGCTGCTTCCCCCGCGCCGCCTCCCCGCGCCGCTCGCGCAGCCATGTCCGAGGAGAAGCCCAAG|GTGCAGAGGCCAAGACCGTTTTGCCCAAGAAGGAGAAAATGAAGCTGAGGCGTGAGCAATGGTTGCAGA___AAATCGAAGCCATAAAACTGGCTGAGCAGAAGCACAGGGAGGAGCGGAGGCGGAGGGCCACGGTGGTGGTGGGGGACCTGCACCCTCTCAG	out-of-frame	MSEEKPK|vqrprpfcprrrk*	.
TALL049	FAM207A	SUMO3	+/+	-/-	21:44943792	21:44809118	splice-site	splice-site	inversion	downstream	downstream	1	0	0	100	943	low	.	.	duplicates(1)	CCTGCCCCGGAGGCGACCCCTCCGCCGGCCTCGGCCGCGGGGAAG___GACTGGGCGTTCATCAACACCAACATCTTTGCCAGGACCAAGATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAG|GGCTTGTCAATGAGGCAGATCAGATTCAGGTTCGACGGGCAGCCAATCAATGAAACTGAC	out-of-frame	PAPEATPPPASAAGKDWAFINTNIFARTKIDPSALVQKLELDVRSVTSVRR|glvneadqiqvrraanq*	.
TALL049	CSNK1G2	REXO1	+/+	-/-	19:1941418	19:1828631	splice-site	splice-site	inversion	downstream	downstream	0	1	0	202	121	low	.	.	.	GGTCCGCGCTGCGCTGCTGAGGCCGGGCCGGCCGCCCAGACGCTGCCCGCGGGCCCGGCCACGGCGGAGCCAAG|GGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGC	.	.	.
TALL049	B3GNTL1	TBCD	-/-	+/+	17:83035035	17:82923652	splice-site	splice-site	inversion	upstream	upstream	1	0	0	100	650	low	.	.	.	GAAAAATGGAGAGTGAAGCTGGAAGATTCTGGTGTCCAtGTGATCATTGGGGGGCACGATTCTCCCTCTCCTAGAGGCG___TCGGATACGCTAAAAATCAAGCAGTTGCCCAGAGCTCAGGGTCTTACCTTTGCTTTTTGGATTCG|GATGCAGCAGTCTCGGCCCTGGCTGCTCTATGCAGTGAATATTACATGAAGGAGCCGGGGGAGGCAGATCCCGCAATTCAGG___AGGAGCTGATCACGCAGTACCTGGCTGAGCTTCG	in-frame	EKWRVKLEDSGVHVIIGGHDSPSPRGVGYAKNQAVAQSSGSYLCFLDS|DAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAEL	.
TALL049	B3GNTL1	TBCD	-/-	+/+	17:83035035	17:82924939	splice-site	splice-site	inversion	upstream	upstream	1	0	0	100	957	low	.	.	duplicates(1)	CGAGGGTCTACCTCAGTGACCTCCACCAGCCCGTCACACATGTGCCAGCCCCCAACTTCCCTCTTGTGACCGGATCCTGACTTTCATCAGG___TCGGATACGCTAAAAATCAAGCAGTTGCCCAGAGCTCAGGGTCTTACCTTTGCTTTTTGGATTCG|AGGAGCTGATCACGCAGTACCTGGCTGAGCTTCGGAACCCCGAGGAGAT	out-of-frame	rgstsvtstspshmcqpptsll*pdpdfhqVGYAKNQAVAQSSGSYLCFLDS|rs*	.
TALL049	B3GNTL1	TBCD	-/-	+/+	17:83014454	17:82923652	splice-site	splice-site	inversion	upstream	upstream	1	0	0	78	650	low	.	.	.	GAAGATTCTGGTGTCCAtGTGATCATTGGGGGGCACGATTCTCCCTCTCCTAGAGGCG___TCGGATACGCTAAAAATCAAGCAGTTGCCCAGAGCTCAGGGTCTTACCTTTGCTTTTTGGATTCG___GATGACGTC...AACACGAGGCTGCCGTTCAGCACCCGTCGAGC|GATGCAGCAGTCTCGGCCCTGGCTGCTCTATGCAGTGAATATTACATGAAGGAGCCGGGGGAGGCAGATCCCGCAATTCAGG___AGGAGCTGATCACGCAG	in-frame	HEAAVQHPSS|DAAVSALAALCSEYYMKEPGEADPAIQEELIT	.
TALL049	B3GNTL1	TBCD	-/-	+/+	17:82956695	17:82932658	splice-site	splice-site	inversion	upstream	upstream	1	0	0	73	753	low	.	.	.	GCAGCTTGACTGCCGGCAGCCAGCGCAAG___GTGGTGGCATTCTGTGACGTGGACGAGAACAAGATCAGGAAAGGCTTCTATTGCCACGAGGACTCTCAG___GAAAGACCCAAGCCCCGAATCCCCATCCTGCACTTCCGAGCCGCCCGGCCACCCTTCGTCATCTGCGTGAAGCTG|GGTGTCCGTGCCGCTGCTGAAGACGCTGGACCACGTGCTCACCCACGGCTGCTTCGACATCTTCACCACG	out-of-frame	SLTAGSQRKVVAFCDVDENKIRKGFYCHEDSQERPKPRIPILHFRAARPPFVICVKL|gvraaaedagprahprllrhlhh	.
TALL049	EPG5	PSTPIP2	-/-	-/-	18:45967177	18:45988759	splice-site	splice-site	duplication	upstream	downstream	1	0	0	46	25	low	.	.	.	GGAGGCCAGAACCGGGCAGGTTGCTTGAAGCGCAGGGGTTTGACAAAAACAAACGGTGACGGCGCCGCGGAAGGGTCTATGGCCGAGGCGGTGAAGCCCCAGCGCCGGGCCAAGGCCAAGGCCAGCCGGACTAAAACAAAG|ATGATCCCAATTACTCTTTGGTTGATGAC	out-of-frame	MAEAVKPQRRAKAKASRTKTK|mipitlwlm	.
TALL049	ZNF783	PABPC1	+/+	-/-	7:149287774	8:100718282	splice-site	splice-site	translocation	downstream	downstream	0	1	0	103	7759	low	.	.	.	GGGATGCATGTGGACAGCCAAGAAGAAGCTGGCTGACTGCGAGAAGGTGGCTGTGGAGTTCGGGAACCAGCTGG|AGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATCTGGACAAATCCATTGATAATAAAG	out-of-frame	GCMWTAKKKLADCEKVAVEFGNQL|ersvlwtp*	.
TALL049	RP4-800G7.2	PABPC1	+/+	-/-	7:149287774	8:100718282	splice-site	splice-site	translocation	downstream	downstream	0	1	0	103	7759	low	.	.	.	GGGATGCATGTGGACAGCCAAGAAGAAGCTGGCTGACTGCGAGAAGGTGGCTGTGGAGTTCGGGAACCAGCTGG|AGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATCTGGACAAATCCATTGATAATAAAG	.	.	.
TALL049	MAPK8IP3	LA16c-431H6.6	+/+	+/+	16:1748720	16:1685439	splice-site	splice-site	duplication	downstream	upstream	1	0	0	364	74	low	.	.	.	GCCCGGGAGAAGCGCGACAGCCGCAACATGGAAGTACAGGTCACCCAGGAGATGCGCAACGTCAGTATAG___GCATGGGCAGCAGTGACGAGTGGTCTGATGTTCAAGACATTATTGACTCCACGCCAGAGCTGG...AGCTGTCGACGGCAGGGTCTGAGGTCATCGGGGATGTGGACGAAGGGGCCGACCTCCTAG|GGCCATGAAGCCCCCAGGAGGAGAATCGAGCAATCTTTTTGGAAGTCCAGAAGAAGCTACTCCTTCCAaCAGG	out-of-frame	LSTAGSEVIGDVDEGADLL|gp*	.
TALL049	MAPK8IP3	LA16c-431H6.6	+/+	+/+	16:1729578	16:1685439	splice-site	splice-site	duplication	downstream	upstream	0	1	0	294	74	low	.	.	.	ACGTGGAGCACATTGAGAGGTCCAAGATGCAGCAGGTCGGAGGAAACAGCCAGACCGAGAGCAGCCTGCCGGGGCGGAG|GGCCATGAAGCCCCCAGGAGGAGAATCGAGCAATCTTTTTGGAAGTCCAGAAGAAGCTACTCCTTCCAGCAGGCCTAATAGGATGGCATCTAATATTTTTGGACCAACAGAAGAACCTCAGAACATACCCAAGAGGACAAATCCC	in-frame	VEHIERSKMQQVGGNSQTESSLPGRr|AMKPPGGESSNLFGSPEEATPSSRPNRMASNIFGPTEEPQNIPKRTN	.
TALL049	MAPK8IP3	HN1L	+/+	+/+	16:1748720	16:1685439	splice-site	splice-site	duplication	downstream	upstream	1	0	0	364	74	low	.	.	.	GCCCGGGAGAAGCGCGACAGCCGCAACATGGAAGTACAGGTCACCCAGGAGATGCGCAACGTCAGTATAG___GCATGGGCAGCAGTGACGAGTGGTCTGATGTTCAAGACATTATTGACTCCACGCCAGAGCTGG...AGCTGTCGACGGCAGGGTCTGAGGTCATCGGGGATGTGGACGAAGGGGCCGACCTCCTAG|GGCCATGAAGCCCCCAGGAGGAGAATCGAGCAATCTTTTTGGAAGTCCAGAAGAAGCTACTCCTTCCAaCAGG	out-of-frame	LSTAGSEVIGDVDEGADLL|gp*	.
TALL049	MAPK8IP3	HN1L	+/+	+/+	16:1729578	16:1685439	splice-site	splice-site	duplication	downstream	upstream	0	1	0	294	74	low	.	.	.	ACGTGGAGCACATTGAGAGGTCCAAGATGCAGCAGGTCGGAGGAAACAGCCAGACCGAGAGCAGCCTGCCGGGGCGGAG|GGCCATGAAGCCCCCAGGAGGAGAATCGAGCAATCTTTTTGGAAGTCCAGAAGAAGCTACTCCTTCCAGCAGGCCTAATAGGATGGCATCTAATATTTTTGGACCAACAGAAGAACCTCAGAACATACCCAAGAGGACAAATCCC	in-frame	VEHIERSKMQQVGGNSQTESSLPGRr|AMKPPGGESSNLFGSPEEATPSSRPNRMASNIFGPTEEPQNIPKRTN	.
TALL050	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	7	6	3	35	102	high	.	.	duplicates(2),low_entropy(1),mismatches(1)	CCCgGCCTGCTTTCTCCTGCCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...GGCGAAGACACCCGGGCAGCCGTG...___...CAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...AAGACTGATTTTTTTTTTT...___...CGGGATCGCTC...___...TCTGCCTTT...___...TTTT...___...TT...___...TTTTGGACATTTTTGAGCGCCGTGG...___...GCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAG	.	.	.
TALL050	ABHD17A	TMEM123	-/-	-/-	19:1879921	11:102470389	splice-site	5'UTR	translocation	upstream	downstream	6	0	8	687	12	high	.	.	duplicates(5)	GGGCGCTGGAAGCTGCACCTGACGGAGCGTGCCGACTTCCAGTACAGCCAGCGCGAGCTGGACACCATCGAGGTCTTCCCCACCAAGAGCGCCCGCGGCAACCGCGTCTCCTGCATGTATGTTCGCTGCGTGCCTGGTGCCAG___GTACACGGTCCTCTTCTCGCACGGCAATGCCGTGGACCTGGGCCAGATGAGCAGCTTCTACATTGGCCTGGGCTCCCGCCTCCACTGCAACATCTTCTCCTACGACTACTCCGGCTACGGTGCCAGCTCGGGCAGGCCTTCCGAGAGGAACCTCTATGCCGACATCGACGCCGCCTGGCAGGCCCTGCGCACCAG|ATTCCACATGTAAGTGAGATTTTCGCTGGTGGAGGGTGTCAATGCCTGAAGGGTTGAAGATCAGGAGCAATGACTGGATTACAGAATGAAGAGGACTTACTGAACAATTCGCTTCCAAAAGAAAAGGGAGAAGAAGAAATCCAAGAAGACATCAGCACTTTCACCTTTTATGTCTTCTAGGTTTGACAGGGGTCTGCTATTCCACCCTCAATTCAG___CCTCTGAAAAATCCTAACTTCC	out-of-frame	GRWKLHLTERADFQYSQRELDTIEVFPTKSARGNRVSCMYVRCVPGARYTVLFSHGNAVDLGQMSSFYIGLGSRLHCNIFSYDYSGYGASSGRPSERNLYADIDAAWQALRTr|fhm*	.
TALL050	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	14	30	10	159	73	medium	.	.	duplicates(18),low_entropy(1),mismatches(1)	GCGACCCCCGGGCCAGGACAGGTGAGAGCGGCGCAGGCCCGGGCCCGGCGTGGCGGAGGTGCGCGTGAGCGGCCAGCAGAGGGCGCCAGAGAGCCAGGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAAC...CAAAGTGtATGGTGAGATAATCtTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATaTGTTTTACTGGATACTGC	.	.	.
TALL050	HNRNPC	ZNF219	-/-	-/-	14:21269298	14:21093674	splice-site	splice-site	deletion/read-through	upstream	downstream	14	19	0	3486	134	medium	.	.	duplicates(6),low_entropy(2),mismappers(2),mismatches(2)	TTcTGTGAAGAGACGAAGACTGAGCGGTTGTGGCCGCGTTGCCGACCTCCAGCAGCAGTCGGCTTCTCTACGCAGAACCCGGGAGTAGGAGACTCAGAATCGAATCTCTTCTCCCTCCCCTTCTTG|CTCCACAGCACCTGTTGCCTTCATTAGCAGCTTTTCCTCCTCTTCCCTGCACTTCCCAGAACCAAAGAATGTGAAGGGGGTCCATGGAG___GGCTCACGTCCCCGCGCCCCGAGCGGCCACTTAGCGCCGTCGCCGCCGGCTTTCGACGGCGAGCTGGATCTGCAGCGATACTCCAACGGGCCAGCCGTGAGCGCAGGGTCGCTCGGGATGGGAGCGGTGAGCTGGTCTGAGAGTCGTGCAGGCGAACGGCGCTTCCCCTGCCCTGTATGCGGGAAGCGCTTCCGCTTCAACTCTATCCTTGCTTTGCACCTGCGGGCGCACCCAGGAGCCCAGGCCTTCCAGTGCCCTCACTGCGGCCACCGCGCGGCGCAGCGGGCTCTGCTGCGCTCGCACCTGCGCACACACCAGCCCGAGCGCCCACGTAG...GGAAGTGCGGCCTGTGCAGTTTCGGCTCCAGCCAGGAGGAGGAGCTGCTGCACCACAGCCTGACGGCCCACGGGGCTCCCGAGCGTCCCCTGGCGGCCACCTCCGCTGCGCCTCCGCCTCAGCCTCAGCC	.	.	.
TALL050	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	8	3	43	31	medium	.	.	duplicates(4),low_entropy(2)	GTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGG...TCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCC	.	.	.
TALL050	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	4	2	21	102	medium	.	.	duplicates(1),low_entropy(4),mismappers(2)	GCGGGGCCCCCAGGCGCCCCGGCCCCTCCCCGGGCTCCACGCCGCGGGCAGGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCG...CCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTG	.	.	.
TALL050	RFTN2	PLCL1	-/+	+/+	2:197640807	2:198083758	intron	splice-site	deletion/3'-3'	downstream	upstream	0	2	0	41	74	medium	.	.	duplicates(1),mismappers(2)	GAAATCACCCGTCTTCTGCGTCGCTCACGCCGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCCCCCAGGAATGCTTATTTTTACACTCAGCACTTTTCCCATTGACATATCG|GATCCTTCAAACCAAAAATGTGGTGGAAGAAAGAAAACCGTGTCTTTCAGCAGCATGCCATCGGAAAAGAAAATTAGCAGTGCAAATGACTGCATCAGCTTCATGCAAGCTGGCTGTGAGTTGAAGAAAGTCCGGCCAAATTCTCGCATTTACAACCGTTTTTTCACTCTGGACACAGAC	.	.	.
TALL050	FMR1	FMR1	+/+	+/+	X:147944931	X:147944036	CDS	intron	duplication	downstream	upstream	1	1	0	68	28	medium	.	.	duplicates(1)	GGCACATCAAGGTTTGAACTTAGGTGGCTAATAACATACCTTTTTAAAAATGAGAATGAAACATGTTTATAACCAAAATTAACCTCAAATATTGCAAAGCCCTTCATTTTGAGTTTAAAATTTTGTTTTATG...ATAACTTTTAACTCTCGATAGGAACTAATTCTGAAGCATCAAATGCTTCTGAAACAGAATCTGACCACAGAGACGAACTCAGTG|ATTGGTCATTAGCTCCAACAGAGGAAGAGAGAGGTAGTAGAGCTGATATTCTGGAGTTGGGGAGAGTTACCTACTCCTAAGGCCAACCTTGAACCTAACCCCTAACCCCTCTCCCAACAGTCTGTTCTTTTTACTCATGAATTTCTGCCTCACCGTGGAGCTCTTTTTCTCCGCTCCTGTCCTCTAAGTCGTTAACCCCTT	out-of-frame	nf*lsiGTNSEASNASETESDHRDELS|dwslapteeergsradilelgrvtys*	.
TALL050	RP11-333E1.1	NUP93	+/+	+/-	17:5192163	16:56740983	splice-site	intron	translocation/5'-5'	downstream	downstream	0	2	0	27	5	medium	.	.	.	GAGAGGCCGCGTCCTCAGCTGGTCCTAGACATGCGTGGCGTCGGGGCTGTGGCACGGTCGGGTCCGGG|AGCCGAAGCTGGACTGTACgGCTGCCATCTCGGCTCACTGCAACCT...CCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCAAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAG	.	.	.
TALL050	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	15	0	81	25	low	.	.	duplicates(5)	CTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCtTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCC	.	.	.
TALL050	GRIP2(13813),RHBDF1P1(16958)	GRIP2	./-	-/-	3:14555894	3:14525931	intergenic	splice-site	deletion/read-through	upstream	downstream	2	6	1	8	11	low	.	.	low_entropy(1)	GAtGATTATCTATTTTAGCAACTCCGGGAGGGCGGAGGAAGGGAGCGCCCAGCCTGTGCCAGTTAGCGCAAGCAGCTCTGGAGCGGGCACAGGAGCGCCGGCTCCAGGCGTGGGAGGCTGGGGCAGGCTGCACAGGGCTCTGCCGGAGGGCAGGAGGGCACAATGCTGGCGGTGTCACTCAAGTGGCGGCTGGGCGTGGTGAGGCGGCGTCTCAAAGGTGCCG|ACGATGGGCCCTACTCCAAAGGAGGCAAGGACGCAGGAGGGGCCGACGTTTCCCTGGCGTGCCGCAGACAGAGCATTCCAG___AGGAGTTCCGAGGGATCACTGTGGTGGAGCTGATCAAGAAAGAAGGCAGCACGCTGGGCCTGACTATCTCAGGTGGCACCGACAAGGATGGAAAGCCCAGGGTCTCCAACCTGAGACCTGGGGGACTTGCAGCCAG___GAGTGATCTGCTGAACATTGGTGACTATATTCGGTCTGTGAACGG	.	.	.
TALL050	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	6	0	31	30	low	.	.	duplicates(1),low_entropy(3)	CCCAGGGTTGAGAAAGAAGCTGAAGTTAACGGTTGATATCCTATGTCTTTCCTCAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAATGTAAGTATTCCTGTTTCCCTTCTTGTTGGGTACCTGAGAAATGGGAGGGGGAATGGAGG...AAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCCTCATTCCCAATGCCATCCAAGTTTGCACTGATTCAGAAAAG___CACTTCTTCACTTCGTTcGGG	.	.	.
TALL050	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	0	83	459	low	.	.	duplicates(3),mismatches(1)	CGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGtCGGTATCCCcGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL050	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	11	459	low	.	.	read_through(2)	CTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAG	out-of-frame	QRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL050	RNASEH2B-AS1	RNASEH2B	-/+	+/+	13:50866386	13:50927407	intron	splice-site	deletion/read-through/3'-3'	downstream	upstream	4	2	0	11	533	low	.	.	duplicates(1)	CCGGTCTGGGTGAGTATGGGTGTATGACAGTGCATCCTGCAATGGGATGGTGTCCTGTCCAGGGCTGGTTCCTGCCTTGACTCTGCGCTGCCTGGAGAGGCTCCAGCCAGTCTGGACCGTAAAATGGAATAAGCAG|AATATTTAAAAGATGCTTCAAAGAAGATGAAAAATGGGCTAATGTTTGTAAAACTGGTTAACCCCTGTTCAG___GAGAAGGAGCCATTTACTTGTTCAATATGTGTCTACAGCAGCTGTTTGAAGTAAAAGTTTTCAAGGAAAAACACC	.	.	.
TALL050	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	0	2	3	10	161	low	.	.	.	AGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCAT	.	.	.
TALL050	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528417	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	2	27	161	low	.	.	duplicates(2)	ATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA___AAATGTGGTAAAGTACTTGAAGCAAACATCCCGCATCACTATTG...TTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCG	.	.	.
TALL050	EEF1A1P5	VAV2	+/+	-/+	9:133020540	9:133769376	exon	intron	deletion/5'-5'	downstream	upstream	0	0	5	459	1	low	.	.	duplicates(2),mismappers(1),mismatches(11)	GGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAAtGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCA...|...CCACAGGCCCG	.	.	.
TALL050	C18orf32	DYM	-/-	-/-	18:49482222	18:49270355	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	4	264	0	low	.	.	duplicates(1)	AAAGACTAAAGAAATTTTCCTAAAGGACCCCATCATTTAAAAAATGGACCTGATAATATGAAGCATCTTCCTTGTAATTGTCTCTGACCTTTTTATCTGAGACCGGAATTCAGGATAGGAGTCTAGATATTT...|...GATCATGAAG	.	.	.
TALL050	ZNF207	MYO1D	+/+	-/+	17:32365757	17:32535895	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	3	5	0	low	.	.	.	ATAAAAGGTTGAACGGAGCCAAAGTTAGTATGTTACTTTTTCATAGCTGTGAACCCTATTTATTCTTAGTTTTTTTTTTTTTTTTTTT...|...TTTCTTTTTTAAG	.	.	.
TALL050	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	2	0	1	186	25	low	.	.	.	GGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTG?AGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTG	out-of-frame	MDSLAA?ELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwraw	.
TALL050	EEF1A1P6	RAPGEF5	-/-	-/-	7:22511762	7:22340841	exon	intron	deletion/read-through	upstream	downstream	0	0	3	428	1	low	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(4)	CAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCgGGCAAGTCCACCACTACTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAAT...|...CCCAGAGGAC	.	.	.
TALL050	SEC24D	POLR2H	-/-	+/+	4:118731375	3:184363583	CDS	intron	translocation	upstream	upstream	0	0	2	57	18	low	.	.	.	CACGTTAGATGTCAAGAGTACAATGTTACCTGCTGCCGTTCGTTGCTCTGAGTCCCGTCTTTCAGAAGAAGGAATATTCTTACTGGCTAATGGTCTACACATGTTCCTGTGGTTGGGAGTAAGCAGCCCAC...|...GGGCGGTTTGGAGGAAGAGGCTAACCTCGCGGACATGCCCCTGGGCCCCGTGTCCACCCAGCTCTTGTGGCCTGCCCCTACCAGCAGGTCCTGGTGTAGGGACCTCCCTCAGTAAACATTTTATGGATGAGAAA	.	.	.
TALL050	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	73	8	low	.	.	duplicates(1)	CTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCC	out-of-frame	LVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL050	TRAF3IP1	ASB1	+/+	+/+	2:238356080	2:238433549	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	33	80	low	.	.	duplicates(1)	GCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCATGGAGGCGCTACAAATGGATAG___GTCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTGACAATGAAGAGGATGATC...CAGTGGAACTAGAAGAAGAGGAGAAGCATG___GTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTATGAGAAATTGCAGCAGTCACCCAAACCTGGGGAGAAG|TGCAGGTCGTAATCTGAAGGAGTGGC	out-of-frame	VELEEEEKHGGLVKKILETKKDYEKLQQSPKPGEK|crs*	.
TALL050	APLN(65582),XPNPEP2(18455)	XPNPEP2	./.	+/.	X:129720519	X:129749038	intergenic	intron	deletion/read-through	downstream	upstream	1	1	0	5	9	low	.	.	.	.	.	.	.
TALL050	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	59	5	low	.	.	.	CTCATGTGTGCATGACGTCTCCCTTCTCAGGATAGGTGAAGACGGTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCC	out-of-frame	hvcmtspfsg*vktvvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghp	.
TALL050	RFESD	TPTE2P6	+/+	+/-	5:95657052	13:24503052	3'UTR	intron	translocation/5'-5'	downstream	downstream	2	0	0	13	3	low	.	.	duplicates(1)	GACTTTTTATACTTAAAAAATGCCTCCAAAAATGAGATAGGTTTACCTGCTGAACTTGAAAATAAGAAACTTAACCACTGTTAAGTGATCTGTGATCAAGGCAGATCTTGAAGTAAGGAAGCCAGACACAGCTGCTGCCCA|TAAACCACCTCACTGTAAAAATAGAAATCCAAAGGCTCTAGGTGCCAGGCTGGCCTGCCCCTGTCCTCTGCTGTTCCCTCTGTTGACGAATTGATGAGCTGACTCACCC	.	.	.
TALL050	AAK1	NFU1(9286),AAK1(11083)	-/-	./-	2:69505623	2:69446914	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	2	30	3	low	.	.	.	GGAATCCCTTTGATGACGATAATTTCTCCAAACTCACAGCTGAAGAACTGCTAAACAAGGACTTTGCCAAGCTTGGGGcAG___GCAAACATCCCGAGAAGCTTGGAGGCTCAGCTGAGAGTTTGATCCCAGGCT...|...AGACTGATGCTGCCCAATCACCTTGGAAGCCCCCTgGACCATCATGGATGCCAAGCTTCGGGTAACTCTCACAGTGGAAG___GTGAAATAAACAGCCCTGTTGCTCACACAAAACCTGTTGGGTGGTCTCTTCAC	.	.	.
TALL050	AC021224.1	CCDC178	+/+	-/+	18:32412207	18:32943331	exon	intron	deletion/5'-5'	downstream	upstream	0	0	2	5	0	low	.	.	.	CTAAAACATGTCTTCTTTGTAGCAGCTAGGCCCTGCCACCACTGTGCTTGGCTGAGTTCACAAATCTGTTGTAACCTGTaGCTTCCCTGTCACTTCTCTGGCTCTCCTCTCCTGCTAAGCTTTGTT...|...CGAATTCCCT	.	.	.
TALL050	ZCRB1	CDC26	-/-	-/+	12:42312983	9:113266510	3'UTR	intron	translocation/5'-5'	upstream	upstream	0	0	2	188	3	low	.	.	.	CCTCAACATCAGATGATTCAAGACGCCCAAGGATAAAGAAAAGCACATATTTCAGTGATGAGGAAGAACTTAGTGATTAAAATCTTGCCCCAGCACAGTAATAAAAATCAAGATTTGTTAGTAACAATCTTGAAGAGCTAATTTTAATAAAAATAAGAAAAATT...|...AAATTTTTAAAAAAAATTTTTTTTTAA	.	.	.
TALL050	WEE1	SBF2	+/+	-/+	11:9591440	11:9875371	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	5	0	low	.	.	.	AGGAAATCAGGATAAAATAGAGGAGACTTTTGTAAATATATAATGACAATAAAATGTAATAAATGCTAATGCTGGAGGGAcTGTGCAcGGTAGAATGAAGGTTCAAAAGACTATATGTACC...|...ATCCACCTTC	.	.	.
TALL050	WEE1	RP11-1H15.2	+/+	+/+	11:9591440	11:9875371	intron	intron	deletion/read-through	downstream	upstream	0	0	2	5	0	low	.	.	.	AGGAAATCAGGATAAAATAGAGGAGACTTTTGTAAATATATAATGACAATAAAATGTAATAAATGCTAATGCTGGAGGGAcTGTGCAcGGTAGAATGAAGGTTCAAAAGACTATATGTACC...|...ATCCACCTTC	.	.	.
TALL050	LINC01163	NUP214	+/+	+/+	10:128181156	9:131201647	splice-site	splice-site	translocation	downstream	upstream	0	2	0	52	305	low	.	.	.	AAGCtGTGTGTAACATCTTTAAGACCGGCTTCACTCAGCACAGTGTCTCTGAGATTCATCTTAGATGCTGC|GTTTTGGGTCTAGTAATACTGGTTCTGTGTTTGGTCAAGCAGCCAGTACTGGTGGAATAGTCTTTGGCCAG___CAATCATCCTCTTCCAGTGGTAGCGTGTTTGGGTCTGGAAACACTGGAAGAGGGGGAGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGTCAGGATGCAGCCAACAAAAA	.	.	.
TALL050	HDAC4	NDUFA10	-/-	-/-	2:239309087	2:240021412	splice-site	splice-site	duplication	upstream	downstream	1	0	1	183	412	low	.	.	.	AAACAGTGTTCTGGGCGTTCTTTGTGACTCTCGAGCCGAAACACTGTGGTGATCTCTCGTATCATCTGCTTGTTATGTAATGTGACAACATGGATATGAAATAGAAACCAGATGTCAGGGTGGAGCGGCTGA...GACTTGGGTTTCTCCTGAGTTACGGCGCCGAACGCCCTGAGAAAAACGCCTTTGGAGCAGTTTCCGGGATTAAGCGAAAGTCTGGGCTGAAG|GCTTCAAGCACTTTCCTGAAGCGGGGATTCATTATCCAGAC	.	.	.
TALL050	SCAMP4	REXO1	+/+	-/-	19:1905439	19:1828631	splice-site	splice-site	inversion	downstream	downstream	0	2	0	38	95	low	.	.	duplicates(1)	GCCGGGCCGGTTGCTAAGACTTGGCGAAGCGCTGCGCTCGCGCCCGGATCCCTCAG|GGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCG	.	.	.
TALL050	ADAT3	REXO1	+/+	-/-	19:1905439	19:1828631	splice-site	splice-site	inversion	downstream	downstream	0	2	0	38	95	low	.	.	duplicates(1)	GCCGGGCCGGTTGCTAAGACTTGGCGAAGCGCTGCGCTCGCGCCCGGATCCCTCAG|GGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCG	.	.	.
TALL050	HDAC4	HNRNPR	-/-	-/-	2:239081095	1:23341020	splice-site	splice-site	translocation	upstream	downstream	0	1	0	116	269	low	.	.	.	GGCCTGGACCCCCCCATGGGAGACGCTGAGTACTTGGCGGCCTTCAG|CAGCATAATAAAATGGCTAATCAGGTGAATGGTAATGCGGTACAGTTAAAAGAAGAGGAAGAACCAATGGATACTTCCAGTGTAACTCACACAGAACACTACAAGACACTGATAGAGGCAGGCCTCCCACAGAAGGTGGC	out-of-frame	GLDPPMGDAEYLAAFs|siikwlir*	.
TALL050	CD82	EXT2	+/+	+/+	11:44565736	11:44244149	splice-site	splice-site	duplication	downstream	upstream	0	1	0	548	122	low	.	.	.	CGACTGAGGCACGAGCGGGTGACGCTGGGCCTGCAGCGCGGAGCAGAAAGCAGAACCCGCAG|GTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTG...GCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAA	.	.	.
TALL050	NR3C1	ARHGAP26	-/-	+/+	5:143300485	5:143222358	splice-site	splice-site	inversion	upstream	upstream	0	1	0	101	84	low	.	.	duplicates(1)	GTGATTGCAGCAGTGAAATGGGCAAAGGCAATACCAG|TTCACCCATCTCAGGAGCCTGGCTGGTTGGAGGGGACTCTGAACGGAAAGACTGGCCTCATCCCTGAGAATTACGTGGAGTTCCTCTAACCGTGGGCCCCAGCAGAACTGCTGAGCTTTACATGGTATCC	in-frame	VIAAVKWAKAIP|vHPSQEPGWLEGTLNGKTGLIPENYVEFL*	.
TALL050	DUS1L	GUK1	-/-	+/+	17:82060865	1:228148373	splice-site	splice-site	translocation	upstream	upstream	1	0	0	421	2242	low	.	.	.	CAGgGGGCAACCTGCACAACCCCGCCCTGTTCGAGGGCCGGAGCCCTGCCGTGTGGGAGCTGGCCGAGGAGTATCTGGACATCGTGCGGGAGCACCCCTGCCCCCTGTCCTACGTCCGGGCCCACCTCTTC...GCAGGTGCACCAGGAGCTGCGAGAGGAGCTGGCCAAGGTGAAGAgCCTGGAGGGCATCGCTGCTGTGAGCCAGGAGCTGAAGCTGCGGTGTCAG|AAGGAGCCCGGCCTGTTTGATGTGGTCATCATTAACG	in-frame	QVHQELREELAKVKsLEGIAAVSQELKLRCQ|KEPGLFDVVIIN	.
TALL051	RIC3	TRBC2	-/-	+/+	11:8168866	7:142801944	splice-site	splice-site	translocation	upstream	upstream	6	62	21	1746	621	high	.	.	duplicates(55)	GCGACGGGTAACCACGCGGGAGGAGCAGGTCAACTCCCGACAGTGGAGGTGAAGATGCGTGCGCCTCGCGCACCTTGTCCCTCGCGCGACGCCGTCCGCGCCGCCCGCGGTTCGGTCGGGAGCGGCAGCCCGTGCTCCGGTTCCGGTTCCGGTTCCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|ACTGTGGCTTCACCTCCG___AGTCTTACCAGCAAGGGGTCCTGTCTGCCACCATCCTCTATGAGATCTTGCTAGGGAAGGCCACCTTGTATGCCGTGCTGGTCAGTGCCCTCGTGCTGATGGCCATG___GTCAAGAGAAAGGATTCCAGAGGCTAGCTCCAAAACCATCCCAGGTCATTCTTCATCCTCACCCAGGATTCTCCTGTACCTGCTCCCAATCTGTGTTCCTAAAAGTGATTCTCACTCTGCTTCTCATCTCCTACTTACATGAATACTTCTCTCTTTTTTCTGTTTCCCTGAAGATTGAGCTCCCAACCCCCAAGTACGAAATAGG	in-frame	MAYSTVQRVALASGLVLALSLLLPKAFLSRGKRQEPPPTPE|dCGFTSESYQQGVLSATILYEILLGKATLYAVLVSALVLMAMVKRKDSRG*	.
TALL051	RIC3	TRBC2	-/-	+/+	11:8168866	7:142801041	splice-site	splice-site	translocation	upstream	upstream	51	103	52	1746	32532	medium	.	.	duplicates(117)	AGAGAAAGGAGAGGCTGACTGAAAACGTTTCGAGAGAGCAGTGTTTTTAAGCTGTTCTTCAGAGAAGTTTTTGACAACTGGAGATGGTGTCAGGAATTTTCCAGGCAGTGGGAACAGGACAAGCAAAGCTTCC...GGGTACCATTTACAGCGACGGGTAACCACGCGGGAGGAGCAGGTCAACTCCCGACAGTGGAGGTGAAGATGCGTGCGCCTCGCGCACCTTGTCCCTCGCGCGACGCCGTCCGCGCCGCCCGCGGTTCGGTCGGGAGCGGCAGCCCGTGCTCCGGTTCCGGTTCCGGTTCCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|AGGACCTGAAAAACGTGTTCCCACCCgAGGTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGGGGTCAGCACAGACCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCCGCCTGAGGGTCTCGGCCACCTTCTGGCAGAACCCCCGCAACCACTTCCGCTGTCAAGTCCAGTTCTACGGGCTCTCGGAGAATGACGAGTGGACCCAGGATAGGGCCAAACCTGTCACCCAGATCGTCAGCGCCGAGGCCTGGGGTAGAGCAG___ACTGTGGCTTCACCTCCG___AGTCTTACCAGCAAGGGGTCCTGTCTGCCACCATCCTCTATGAGATCTTGCTAGGGAAGGCCACCTTGTATGCCGTGCTGGTCAGTGCCCTCGTGCTGATGGCCATG___GTCAAGAGAAAGGATTCCAGAGGCTAGCTCCAAAACCATCCCAGGTCATTCTTCATCCTCACCCAGGATTCTCCTGTACCTGCTCCCAATCTGTGTTCCTAAAAGTGATTCTCACTCTGCTTCTCATCTCCTACTTACATGAATACTTCTCTCTTTTTTCTGTTTCCCTGAAGATTGAGCTCCCAACCCCCAAGTACGAAATAGGC	in-frame	MAYSTVQRVALASGLVLALSLLLPKAFLSRGKRQEPPPTPE|eDLKNVFPPeVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRADCGFTSESYQQGVLSATILYEILLGKATLYAVLVSALVLMAMVKRKDSRG*	.
TALL051	RIC3	TRBC2	-/-	+/+	11:8168866	7:142802105	splice-site	splice-site	translocation	upstream	upstream	4	20	18	1746	29939	medium	.	.	duplicates(10)	GCGACGGGTAACCACGCGGGAGGAGCAGGTCAACTCCCGACAGTGGAGGTGAAGATGCGTGCGCCTCGCGCACCTTGTCCCTCGCGCGACGCCGTCCGCGCCGCCCGCGGTTCGGTCGGGAGCGGCAGCCCGTGCTCCGGTTCCGGTTCCGGTTCCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|AGTCTTACCAGCAAGGGGTCCTGTCTGCCACCATCCTCTATGAGATCTTGCTAGGGAAGGCCACCTTGTATGCCGTGCTGGTCAGTGCCCTCGTGCTGATGGCCATG___GTCAAGAGAAAGGATTCCAGAGGCTAGCTCCAAAACCATCCCAGGTCATTCTTCATCCTCACCCAGGATTCTCCTGTACCTGCTCCCAATCTGTGTTCCTAAAAGTGATTCTCACTCTGCTTCTCATCTCCTACTTACATGAATACTTCTCTCTTTTTTCTGTTTCCCTGAAGATTGAGCTCCCAACCCCCAAGTACGAAATAG...___AAGTCTTTGAAAGCCTTGGAGATAACCAGAAAATGAAGGAAGCCCTCCtCCACTGAGTTTCAGGGCAAAGGGtAGAAACAAGATAAAG	in-frame	MAYSTVQRVALASGLVLALSLLLPKAFLSRGKRQEPPPTPE|eSYQQGVLSATILYEILLGKATLYAVLVSALVLMAMVKRKDSRG*	.
TALL051	RIC3	TRBC2	-/-	+/+	11:8168866	7:142802503	splice-site	splice-site	translocation	upstream	upstream	0	3	9	1746	30939	medium	.	.	.	CGTCCGCGCCGCCCGCGGTTCGGTCGGGAGCGGCAGCCCGTGCTCCGGTTCCGGTTCCGGTTCCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|GTCAAGAGAAAGGATTCCAGAGGCTAGCTCCAAAACCATCCCAGGTCATTCTTCATCCTCACCCAGGATTCTCCTGTACCTGCTCCCAATCTGTGTTCCTAAAAGTGATTCTCACTCTGCTTCTCATCTCCTACTTACATGAATACTTCTCTCTTTTTTCTGTTTCCCTGAAGATTGAGCTCCCAACCCCCAAGTACGAAATAGGCTAAACCAATAAAAAATTGTGTGTTG...CAATGCTGCTTTCTCCTGTTCATCCTGATGGAAGTCCTCAAACACCATTTCCATACCCAGGCATTCTGGGTCCCCACTGGAGGGTTAGTCTGAAGGGCAATGGCTGGGCTTTGGAAAACCAGCAAGATGAGGA	out-of-frame	MAYSTVQRVALASGLVLALSLLLPKAFLSRGKRQEPPPTPE|gqekgfqrlapkpsqvilhphpgfsctcsqsvflkviltlllisylheyfslfsvslkielptpkyeig*	.
TALL051	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	13	19	5	96	229	high	.	.	duplicates(18),low_entropy(2),mismatches(3)	GTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...GGGATCG...___...TCTTCTGCCTTT...___...TTTT...___...TT...___...TTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGcCCGAGGACTACCTGAGAAGCTTCCGGCCCcACCACACCACCGACG	.	.	.
TALL051	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	25	0	157	83	high	.	.	duplicates(10),low_entropy(2)	CAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTG	.	.	.
TALL051	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	294	83	low	.	.	.	CTGGACTCTGCTCAGAGGAACCTGTACAGGGATGTGATGCTGGAGAATTATAGGAACATGGCTTCCCTGG___TGGGACCATTCACCAAACCTGCTCTGATCTCCTGGTTGGAAGCAAGGGAGCCATGGGGCCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGG	out-of-frame	LDSAQRNLYRDVMLENYRNMASLVGPFTKPALISWLEAREPWGLNMQAAQPKGNPVAAPT|gmsrgqfgq	.
TALL051	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	4	6	2	35	27	high	.	.	duplicates(6),low_entropy(1),mismappers(2),mismatches(2)	TGGGAGTGCTAAAAGCAAGGAGCCAGCAAGTCTAGCAAACATGCAAGCCCTGCCCCAGCTTTTCTCCCAACACTCAGCTCTTCTCCCAACACAAGAGCTTTTGGAGGTCACTTCTGGGGCCTTTGCTAAGCAGGCCACTCCTTGCTTCTCCTGCAGACAACAAGGTTTCCAGCATGATTATTGCAATGACCAATGGAACAATGATGAAACATCCATTTTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGG...___TGTTTCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAGGACTGCAAGTATATCGTGGTGGAGAAGAAGGACCCAAAAAAGACCTGTTCTGTCAGTG	.	.	.
TALL051	ABLIM1	AFAP1L2	-/-	-/-	10:114437844	10:114340731	splice-site	splice-site	deletion/read-through	upstream	downstream	7	4	0	283	19	high	.	.	duplicates(6),mismappers(3)	CCATCAACTCCCCTGTGTACAGCCGCCACAGCTACACTCCAACCACGTCCCGCTCTCCCCAGCATTTCCACAGACCTG___ATCAAGGAATCAACATTTACCGAAAGCCACCCATCTACAAACAGCATG___GACCTG...GGGACAGTTGATCTTGAAAGAAGAGATGGAGAAAGAGAGCCGGGAAAGGTCATCTCTGTTAGCCAGTCGCTACGATTCTCCCATCAACTCAG___CTTCACATATTCCATCATCTAAAACTGCATCTCTCCCTGGCTATGGAAGAAATGGGCTTCACCGG___CCTGTTTCTACCGACTTC...CGGGGGAGTGCGAG___ATTACCAG___ACACTCCCAGATGGCCACATGCCTGCAATGAGAATGGACCGAGGAGTGTCTATGCCCAACATGTTGGAACCAAAG___ATATTTCCATATGAAATGCTCATGGTGACCAACAGAGGGCGAAACAAAATCCTCAGAGAGGTGGACAGAACCAGGCTGGAG|CCCTGGAACAGCTGCTGACAGAGTTGGATGACTTCCTCAAGATTCTTGACCAGGAGAACCTGAGCAGCACAGCACTGGTGAAGAAGAGCTGCCTGGCGGAGCTCCTCCGGCTTTACACCAAAAGCAGCA___GCTCTGATGAGGAGTACATTTATATGAACAAAGTGACCATCAACAAGCA	out-of-frame	GGVRDYQTLPDGHMPAMRMDRGVSMPNMLEPKIFPYEMLMVTNRGRNKILREVDRTRLE|pwnsc*	.
TALL051	TUSC2	FYCO1(4975),XCR1(16225)	-/-	./-	3:50326384	3:46000799	splice-site	intergenic	deletion	upstream	downstream	0	1	7	204	54	high	.	.	duplicates(1)	GGGCCTGTGGCCCTTCGCCTCGGCGGCCGGAGGCGGCGGCTCAGAGGCAGCAGGAGCTGAGCAAGCTTTGGTGCGGCCTCGGGGCCGAGCTGTGCCCCCCTTCGTATTCACGCGCCGCGG___CTCTATGTTCTATGATGAGGATGGGGATCTGGCTCACGAGTTCTATGAGGAGACAATCGTCACCAAGAACGGGCAGAAGCGGGCCAAGCTGAGG|GTAATCTATTCTGTGCCTGTAGCCTGGGACCAGCCTTCATCTCTGTCCG___ATGAGAAGCCTGTGTCTGTACCcGTTCAGCCAACTGCCAGAATGGAATGGACTTCTTTCCCTTCAAATATGACCTTGAAGGTCTGGATGCATATTGGCAAGGGCATGGAAGTGATTCAAGAAATGG	out-of-frame	GLWPFASAAGGGGSEAAGAEQALVRPRGRAVPPFVFTRRGSMFYDEDGDLAHEFYEETIVTKNGQKRAKLR|viysvpvawdqpsslsdekpvsvpvqptarmewtsfpsnmtlkvwmhigkgmeviqem	.
TALL051	RAB40C	UBE2I	+/+	+/+	16:590433	16:1314020	splice-site	splice-site	deletion	downstream	upstream	1	4	0	317	1756	high	.	.	duplicates(6),mismatches(8)	CGACAGCGACGTGGGCAAGGGCGAGATCCTGGAGAGCCTGCAGGACGGCGCGGCAGAGTCCCCGTACGCCTACAGTAACG|GGACTTTGAACATGTCGGGGATCGCCCTCAGCAGACTCGCCCAGGAGAGGAAAGCATGGAGGAAAGACCACCCATTT___GGTTTCGTGGCTGTCCCAACAAAAAATCCCGATGGCACGATGAACCTCATGAACTGGGAGTGCGCCATTCCAGGAAAGAAAGGG___ACTCCGTGGGAAGGAGGCTTGTTTAAACTACGGATGCTTTTCAAAGATGATTATCCATCTTCGCCACCAAAAT___GTAAATTCGAACCACCATTATTTCACCCGAATGTGTACCCTTCGGGGACAGTGTGCCTGTCCATCTTAGAGGAGGACAAGGACTGGAGGCCAGCCATCACAATCAAACAG___ATCCTATTAGGAATACAGGAACTTCTAAATGAACCAAATATCCAAGACCCAGCTCAAGCAGAGGCCTACACGATTT	in-frame	DSDVGKGEILESLQDGAAESPYAYSN|gtlnMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTI	.
TALL051	UNKL	TMEM8A	-/-	-/-	16:1390632	16:377848	splice-site	splice-site	deletion	upstream	downstream	1	1	2	361	323	high	.	.	duplicates(2)	CGGGTACTGCCCGCGCGGCCCCTTCTGTGCCTTTGCACACGTTGAGA___AGAGCCTGGGGATGGTGAATGAATGGGGCTGTCACGACCTCCACCTCACGAGTCCTTCCTCCACGGGCAGCGGCCAGCCGGGAAAT___GCCAAGCGGAGAGACTCGCCGGCCGAGGGTGGCCCTAGGGGCAGCGAGCAAGACAGCAAGCAG|AGGTGGGGCTGGTGTCCGAGCACTTCTCGCAGGCCCCGCAGAGGCTGTCCTTCTACAGCTGGTACGGCAGTGCCAGGCTCTTCCGCTTCCGCGTGCCCCCAGATGCTGTGCTTCTACGCTGGCTCCTGCAGGTCTCCCGGGAGAGCGGCGCTGCCTGCACCGACGCGGAGATCACCGT___GCACTTCCGTTCCGGCGCCCC...GCTTCCCGGACGACACCGCGGTACAGCCCTCCTTCCAGGTCGGGGTGCCGCTGAGCACCACACCGAGAAGCAATGCCTCCGTCAACGTTTCCCACCCGGCCCCCGGGGACTGGTTCGTGGCCGCCCACCTGCC	out-of-frame	GYCPRGPFCAFAHVEKSLGMVNEWGCHDLHLTSPSSTGSGQPGNAKRRDSPAEGGPRGSEQDSKQ|rwgwcpstsrrprrgcpstagtavpgssasacpqmlcfyagscrspgraalpaptrrspctsvpap	.
TALL051	UNKL	TMEM8A	-/-	-/-	16:1390632	16:377585	splice-site	splice-site	deletion	upstream	downstream	0	1	1	361	392	medium	.	.	duplicates(3)	GGAGAGACTCGCCGGCCGAGGGTGGCCCTAGGGGCAGCGAGCAAGACAGCAAGCAG|GCACTTCCGTTCCGGCGCCCCTCCGGTCATCAACCCGCTGGGCACCAGCTTCCCGGACGACACCGCGGTACAGCCCTCCTTCCAGGTCGGGGTGCCGCTGAGCACCACACCGAGAAGCAATGCCTCCGTCAACGTTTCCCACCCGGCCCCCGGGGACTGGTTCGTGGCCGCCCACCTGCCCCCCTCATCCCAG	out-of-frame	RDSPAEGGPRGSEQDSKQ|alpfrrpsghqpaghqlpgrhrgtallpgrgaaehhtekqclrqrfppgprglvrgrppaplip	.
TALL051	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	12	21	4	117	63	medium	.	.	duplicates(25),low_entropy(4),mismappers(1),mismatches(1)	GCCAGAGAGCCAGGAGCGGCCCGCAGAGGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCtTTTGGGCG...TCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAG...AGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGGGTAGAGATACATATGGAGTCAG	.	.	.
TALL051	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	11	12	7	255	991	medium	.	.	duplicates(17),low_entropy(2)	GTCGGGCCTCCAGCGGGCGGGGCCGTTGGCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL051	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	65	991	low	.	.	duplicates(7),read_through(22)	GGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___...GT...___GTGGAA...CGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCCATGCCAGGGCCAAGACTGG...GTAAAAGAGAA...AGCGATGATTCaGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCG	out-of-frame	RELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL051	RIC3	TRBV25-1	-/-	+/+	11:8168866	7:142791694	splice-site	splice-site	translocation	upstream	upstream	0	6	10	1746	3533	medium	.	.	duplicates(13),mismatches(2)	GGTCAACTCCCGACAGTGGAGGTGAAGATGCGTGCGCCTCGCGCACCTTGTCCCTCGCGCGACGCCGTCCGCGCCGCCCGCGGTTCGGTCGGGAGCGGCAGCCCGTGCTCCGGTTCCGGTTCCGGTTCCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|AGGACCTGAAaAAcGTGTTCCCACCCGAG___GTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGGGGTCAGCACAGACCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCCGCCTGAGGGTCTCGG	in-frame	MAYSTVQRVALASGLVLALSLLLPKAFLSRGKRQEPPPTPE|eDLknVFPPEvavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeqpalndsryclssrlrvs	.
TALL051	RIC3	TRBV28	-/-	+/+	11:8168866	7:142791694	splice-site	splice-site	translocation	upstream	upstream	0	6	10	1746	3533	medium	.	.	duplicates(13),mismatches(2)	GGTCAACTCCCGACAGTGGAGGTGAAGATGCGTGCGCCTCGCGCACCTTGTCCCTCGCGCGACGCCGTCCGCGCCGCCCGCGGTTCGGTCGGGAGCGGCAGCCCGTGCTCCGGTTCCGGTTCCGGTTCCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|AGGACCTGAAaAAcGTGTTCCCACCCGAG___GTCGCTGTGTTTGAGCCATCAGAAGCAGAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGGGGTCAGCACAGACCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCCGCCTGAGGGTCTCGG	in-frame	MAYSTVQRVALASGLVLALSLLLPKAFLSRGKRQEPPPTPE|eDLknVFPPEvavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeqpalndsryclssrlrvs	.
TALL051	MLLT11	GABPB2	+/+	+/+	1:151060553	1:151088190	splice-site	splice-site	deletion/read-through	downstream	upstream	2	8	1	837	51	medium	.	.	duplicates(11),low_entropy(2),mismappers(1)	TGAAGAGGGAAAAGGAGTGAGAAGACAAAGCCGTCAAAGCCCCAACAGCTTTGTATTTCTCCAGCCCGGCGCAGACCCCGGAGCTCCCGAGGCACTCCCTCCATCTTTGGAACACGCCAGTAATTGATTGATAACAG|ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAACGTTGATGGCAAATGGCGCCCCATTCACCACAGACTGG___CTTGGAACATCACCC...___AATGGTGCAGATGTGAATGCCAAGGACATGCTGAAGATGACAGCTTTGCATTGGGCCACAGAGCGCCACCATCGAGATGTCGTAG...GAGCTGATGTCCATGCTTTCAGCAAATTTGATAAATCAGCCTTTGACATAGCTCTGGAGAAAAACAATGCTGAGATTTTGGTCATCCTCCAG___GAAGCAATGCAGAATCAGGTGAATGTTAATCCAGAGAGAGCCAACCCTGTGACTGACCCTGTGAGTATGGCTG	.	.	.
TALL051	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	3	4	3	37	18	medium	.	.	duplicates(5)	CAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGACATGACCCGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGTAAATTATAACAAAACCC...GGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCCCTGTCATCGAGGGAGTTTTT[t]GTGCTGGTAAAGATGATGACTGCCCTGGTGCAGGGCCCGTGTAGCCCAACA	out-of-frame	NCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLLEAGDGGPAVAVGHDPHAEHAHRVPLPAYHPQHE|vtqealtwspqnsinssrcs*	.
TALL051	RIC3	TRBV30(40154),EPHB6(1508)	-/-	./+	11:8168866	7:142853553	splice-site	intergenic	translocation	upstream	upstream	3	3	3	1746	97	medium	.	.	duplicates(3)	CCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|AAGTCTTTGAAAGCCTTGGAGATAACCAGAAAATGAAGGAAGCCCTCCACCACTGAGTTTCAGGGCAAAGGGAAGAAACAAGATAAAGTAGAACCGTCAGTACAAGTGGAATTATTAATGACGTCCAAATGCAGTCATTAAATACTATCAGACTTATTTATTGACTCCTGATATTAAGAGTGAACAAACCCCTGGCCAAGTGGGAACTTGCTCGGTAGCCTTTATCTTTCTATCACTCATTCAGTCAATTCATTAAAGCCTGTTT	out-of-frame	MAYSTVQRVALASGLVLALSLLLPKAFLSRGKRQEPPPTPE|evfeslgdnqkmkealhh*	.
TALL051	SBNO1	CDK2AP1	-/-	-/-	12:123364701	12:123267282	splice-site	splice-site	deletion/read-through	upstream	downstream	2	7	0	89	599	medium	.	.	duplicates(7),low_entropy(1),mismatches(1)	GCCTCATCCGTTGCCCCTCCCCCGCCCCTCCCGGCGGGGCGGGGGGGCTGGGGGAGGGGCGTCAAGATGGCGGCGGGGAGGTAGGCAGAGCAGGACGCCGCTGCTGCCGCCGCCACCGCCGCCTCCGCTCCAGTCGCCTCTGGTCCTTCAAACTCACACCTCCCGGGAGGAGCTGTGCTGGCGCCGGGTCCCGCGGGGAAA|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGACTACGGGCCACCGTCCCTAGGCTACACCCAG___GGAACTGGGAACAGCCAGGTGCCCCAAAGCAAATACGCGGAGCTGCTGGCCATCATTGAAGAGCTGGGGAAGGAGATCAGACCCACGTACGCAGGGAGCAAGAGTGCCATGGAGAGGCTGAAGCGCG___GCATCATTCACGCTAGAGGACTGGTTCGGGAGTGCTTGGCAGAAACGGAACGGAATGCCAGATCCTAGCTGCCTTGTTGGTTTTGAAGGATTTCCATCTTTTTACAAGATGAGAAGTTACAGTTCATCTCCCC	.	.	.
TALL051	OAZ1	TCF3	+/+	-/-	19:2269744	19:1650287	splice-site	splice-site	inversion	downstream	downstream	3	0	6	2543	683	medium	.	.	duplicates(2)	GCAGCGGCGGCGGCGCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATG___ATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGGCCCGCCTCCCTGGCCGGGGCGCAGTTCGGAGGTTCAG___GCAAGAGCGGTGAGCGGGGCGCCTATGCCTCCTTCGGGAGAGACGCAG	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|vsrpevpalapge*	.
TALL051	OAZ1	TCF3	+/+	-/-	19:2269744	19:1632405	splice-site	splice-site	inversion	downstream	downstream	0	4	1	2543	1072	medium	.	.	duplicates(2)	GCGCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|GTCTTGAGGACCGGCCCAGCTCAGGCTCCTGGGGCAGCGGCGACCAGAGCAGCTCCTCCTTTGACCCCAGCCGG___ACCTTCAGCGAGGGCACCCACTTCACTGAGTCGCACAGCAGCCTCTCTTCATCCACATTCCTGGGACCGGGACTCGGAG___GCAAGAGCGGTGAGCGGGGCGCCTATGCCTCCTTCGGGAGAGACGCAGGCGTGGGCGGCCTGACTCAG___GCTGGCTTCCTGTCAGGCGAGCTGGCCCTCAAC	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|s*	.
TALL051	LLfos-48D6.2	TCF3	+/+	-/-	19:2269744	19:1650287	splice-site	splice-site	inversion	downstream	downstream	3	0	6	2543	683	medium	.	.	duplicates(2)	GCAGCGGCGGCGGCGCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATG___ATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGGCCCGCCTCCCTGGCCGGGGCGCAGTTCGGAGGTTCAG___GCAAGAGCGGTGAGCGGGGCGCCTATGCCTCCTTCGGGAGAGACGCAG	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|vsrpevpalapge*	.
TALL051	LLfos-48D6.2	TCF3	+/+	-/-	19:2334721	19:1650287	splice-site	splice-site	inversion	downstream	downstream	0	1	6	1173	683	medium	.	.	duplicates(4)	CCCGCAGTGGGCCCATCTTCCGCACGACCTCAGCAAGGCA|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATG___ATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGGCCCGCCTCCCTGGCCGGGGCGCAGTTCGGAGGTTCAG___GCAAGAGCGGTGAGCGGGGCGCCTATGCCTCCTTCGGGAGAGACGCAG	out-of-frame	RSGPIFRTTSARq|vsrpevpalapge*	.
TALL051	LLfos-48D6.2	TCF3	+/+	-/-	19:2269744	19:1632405	splice-site	splice-site	inversion	downstream	downstream	0	4	1	2543	1072	medium	.	.	duplicates(2)	GCGCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|GTCTTGAGGACCGGCCCAGCTCAGGCTCCTGGGGCAGCGGCGACCAGAGCAGCTCCTCCTTTGACCCCAGCCGG___ACCTTCAGCGAGGGCACCCACTTCACTGAGTCGCACAGCAGCCTCTCTTCATCCACATTCCTGGGACCGGGACTCGGAG___GCAAGAGCGGTGAGCGGGGCGCCTATGCCTCCTTCGGGAGAGACGCAGGCGTGGGCGGCCTGACTCAG___GCTGGCTTCCTGTCAGGCGAGCTGGCCCTCAAC	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|s*	.
TALL051	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	5	1	0	272	91	medium	.	.	duplicates(4)	GCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGA	.	.	.
TALL051	RIC3	TRBC2(5488),TRBV30(4350)	-/-	./+	11:8168866	7:142808236	splice-site	intergenic	translocation	upstream	upstream	1	2	2	1746	197	medium	.	.	duplicates(1)	CTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|ATATGATCATCTTGCCTGATTCATTACTATAAGAGTGATTCATGAAATTCATAGCAAGATCACAGCTCAACAGAGACC...TCTGGTCCTCCTCTGGCCCCAGCTGCATGGCTCTGAACAACTCATTTTTATTCTCTGGGCTTATATGTCCTCCTCTGTGATATGAGGACATTGGGTAAAGTGATCTCTAAGAATCTTCAAACTCTGCTCTTCAGATTCTCTGATTCAAAGCCTGCAGTCTCTGAAGTACC	out-of-frame	MAYSTVQRVALASGLVLALSLLLPKAFLSRGKRQEPPPTPE|dmiilpdsll*	.
TALL051	RIC3	EPHB6	-/-	+/+	11:8168866	7:142861052	splice-site	splice-site	translocation	upstream	upstream	3	1	1	1746	370	medium	.	.	.	GTGAAGATGCGTGCGCCTCGCGCACCTTGTCCCTCGCGCGACGCCGTCCGCGCCGCCCGCGGTTCGGTCGGGAGCGGCAGCCCGTGCTCCGGTTCCGGTTCCGGTTCCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|AAATAAAGGGATTATAGTCCACCCAATTCACAGACTTCTGAGACTCAGACACGAGGAGAGATAGAGAACCGCCAATCTCTAgATCAACAAGCAAAGGAGGTGCCAAGCCTGTTTGTCTTCATTGTGACACTGGAG___GGTGGC	out-of-frame	MAYSTVQRVALASGLVLALSLLLPKAFLSRGKRQEPPPTPE|eikgl*	.
TALL051	RIC3	EPHB6	-/-	+/+	11:8168866	7:142862756	splice-site	splice-site	translocation	upstream	upstream	0	1	0	1746	308	low	.	.	duplicates(1)	CTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGACACCTGAAG|GGTGGCTGTTGGAGGAAGGGAGGAGAGTAAATGAAGAGAAAGAACTGGAATAACCCCTTGCAGAAAAAAAAAAAAAGG___GAAGCAAGCTTAGCTGTACACCCTGAGTCTTGCAAAAGCTGCAGCCCCACCCAGGAGCAGGGTGGTGGCTGGGGCGATGGTGGACGCCCTGAAGATGTCCCATGGCTACTGA	out-of-frame	FLSRGKRQEPPPTPE|gwlleegrrvneekele*	.
TALL051	PTBP1	DAZAP1	+/+	+/+	19:799443	19:1417500	splice-site	splice-site	deletion	downstream	upstream	0	4	1	1406	786	medium	.	.	duplicates(6),mismatches(1)	CTCCGTCCCCCGCGGGTCTGCTCTGTGTGCCATGGACGG___CATTGTCCCAGATATAGCCGTTGGTACAAAG|GAAGCTCTTCGTGGGCGGTCTTGACTGGAGCACGACCCAAG___AGACTCTGCGCAGCTACTTTTCCCAATATGGAGAAGTCGTAGATTGTGTTATCATGAAAGATAAAACCACCAACCAGTCTCGAGGCTTTGGGTTTGTCAAATTTAAAGACCCAAACTGTGTGGGGACGGTGCTGGCCAGCAGACCGCACACGCTAGATGGCCGAAAC___ATCGACCCCAAGCC	out-of-frame	MDGIVPDIAVGTK|ealrgrs*	.
TALL051	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89102604	splice-site	splice-site	inversion	upstream	upstream	1	2	2	743	291	medium	.	.	duplicates(3)	GGAGACCGCCCCGGGCGGGGTGCGCGCTTTGTTCCCGCGCGGGGTGGCCGGAGCCGAGTCCCCGGCATGGCCCAGGCGGCCGCCCCGCGCGCCCCAGCCCCGCCGCGCGCCTGAGCCCGGTGCGGCGCCAGAAGACAGCGCGCAGCCGCCCCTGAGTCGTGGAGGCGGGGACCAAGCTGGAAGGAGCAGCGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GTGACCGGGCTGGTCCACAAGTGGGCATGGACCAAAGACGACGTGATCCTCCACGTGCTCCCGCTGCACCACGTCCATGGTGTGGTCAACGCGCTGCTCTGTCCTCTCTGGGTGGGAGCCACCTGTGTGATGATGCCTGAGTTCAGCCCTCAGCAG___GTTTGGGAAAAGTTCTTAAGTTCTGAAACGCCGCGGATCAATGTCTTTATGGCAGTGCCTACAATATACACCAAGCTGATGGAGTACTACGACAG	.	.	.
TALL051	IRF1	C5orf56	-/-	+/-	5:132486557	5:132449666	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	1	2	1	260	159	medium	.	.	duplicates(4),mismatches(1)	AAG___AAAGTCGAAGTCCAGCCGAGATGCTAAGAGCAAGGCCAAGAGGAAG___TCATGTGGGGATTCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCTCCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGGCTACATGCAGGACTTGGAGGTGGAGCAGGCCCTGACTCCAG|GCTACAAACTCTGGCACCTGCAAAAAACAAGGAAAGTAAATGATTGAAGCAGGGCACTGAAGGTGGGCCTTTGAACAACGCAAGCCTGGATGGAAGTTGAAAGATGAGAGCCCATCTGTGGTGAGTTCTTTGAAAGCTGCTGAGGTGTGAGTTGGTAGGATGCTGGCCCAG	out-of-frame	ESRSPAEMLRARPRGSHVGIPALIPSLMDSAAPLCLMTTAATQFQATCRTWRWSRP*LQ|atnsgtckkqgk*	.
TALL051	NCOR2	CDK2AP1	-/-	-/-	12:124398119	12:123267282	splice-site	splice-site	deletion	upstream	downstream	1	0	3	209	599	medium	.	.	duplicates(1)	GCAAAGGCCGCATCACCCGCTCAATGGCTAATGAGGCCAACAGCGAGGAGGCCATCACCCCCCAGCAGAGCGCCGAGCTGG___CCTCCATGGAGCTGAATGAGAGTTCTCGCTGGACAGAAGAAGAAATGGAAACAGCCAAGAAAG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGACTACGGGCCACCGTCCCTAGGCTACACCCAG___GGAACTGGGAACAGCCAGGTGCCCCAAAGCAAATACGCG	in-frame	KGRITRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKK|aGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQSKY	.
TALL051	NCOR2	CDK2AP1	-/-	-/-	12:124567308	12:123267282	splice-site	splice-site	deletion	upstream	downstream	1	0	1	109	599	medium	.	.	duplicates(2)	CGGGAGGATCGCGTCCCGACCCGAGGCCGGGCCTGCTGCGCGCCCCCAGCCCGATCGGCACCGCCACTTGCCTGAGCGCCCCGGCGGCCCGAGCGCGCCCCAAGCCCGGGCGCCACCGCTGCCACCTCCGCGAG|CTGGGAGTGTCCACTCGCCTTCC	.	.	.
TALL051	TTYH3	MAD1L1	+/+	-/-	7:2632278	7:2002121	splice-site	splice-site	inversion	downstream	downstream	1	1	2	676	35	medium	.	.	.	GCGGGCGGCCAGGCGGGGGTCGACGGGTCCCTGAAGCCCGCGCCCCGGGCCAGCAAGGGAGCCCCGCGCAGGCCGCGCGCATCCGGAGGCGGCCGGGCCCCGCCATGGCCGGGGTCAGCTACGCGGCGCCCTGGTGGGTGAGCCTCCTGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|GCTCAGCTGTCGCAGGCCCTGGAGGAGCTGGGAGGCCAGAAACAAAGAGCAGACATG___CTGGAGATGGAGCTGAAGATGCTGAAGTCTCAGTCCAGCTCTGCCGAACAGAGCT...CCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAG	in-frame	MAGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQ|AQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQS	.
TALL051	TTYH3	MAD1L1	+/+	-/-	7:2632278	7:2069338	splice-site	splice-site	inversion	downstream	downstream	1	0	2	676	50	medium	.	.	.	GCGGGCGGCCAGGCGGGGGTCGACGGGTCCCTGAAGCCCGCGCCCCGGGCCAGCAAGGGAGCCCCGCGCAGGCCGCGCGCATCCGGAGGCGGCCGGGCCCCGCCATGGCCGGGGTCAGCTACGCGGCGCCCTGGTGGGTGAGCCTCCTGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|CGCCCGGGGGCTGGAGAAGGCCAGGC	out-of-frame	MAGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQ|rpgagegq	.
TALL051	TTYH3	MAD1L1	+/+	-/-	7:2632278	7:1898390	splice-site	splice-site	inversion	downstream	downstream	1	0	1	676	147	medium	.	.	.	CGGGCCGGGCCGGGCCCAGGAGCGCGCGGATGATGCGGGCGGCCAGGCGGGGGTCGACGGGTCCCTGAAGCCCGCGCCCCGGGCCAGCAAGGGAGCCCCGCGCAGGCCGCGCGCATCCGGAGGCGGCCGGGCCCCGCCATGGCCGGGGTCAGCTACGCGGCGCCCTG...AGGACACCGACTACCAGCAG|AGCTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCG	out-of-frame	DTDYQQ|s*	.
TALL051	MAD1L1	TTYH3	-/-	+/+	7:2069194	7:2661668	splice-site	splice-site	inversion	upstream	upstream	0	1	0	54	784	low	.	.	.	CGCGtGACCCACGAGGCGCTGGCCCGGAGGCTCCAGAAACGGGTCCTGCTGCTCACCAAG|TACACCTCCAGCATGAGAGCCAAATACCTCGCCACGAGCCAGCCTCGCCCTGACTCCAGCGGCAGCCACTAGACCGCGCCCGGCAGCCACCCACCCCACGTGCCAACTTCCCCTCCCCGTGCCAGCACTGCCGCTTC	in-frame	RvTHEALARRLQKRVLLLTK|YTSSMRAKYLATSQPRPDSSGSH*	.
TALL051	MAD1L1	TTYH3	-/-	+/+	7:1936687	7:2646853	splice-site	splice-site	inversion	upstream	upstream	1	0	0	108	553	low	.	.	.	CAGGACCAAAGTGCTGCACATGAGCCTGAACCCCACCAGTGTGGCCAGGCAGCGCCTGCGCGAGGACCACAGCCAGCTGCAGGCGGAGTGCGAGCGACTGCGCGGGCTCCTGCGCGCCATGGAGAGAGGAGGCACCGTCCCAGCCGACCTTGAGGCTGCCGCCGCGAGTCTGCCATCGTCCAAGGAGGTGGCAG|GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGCCCTGGACCTCCTCTTCC	out-of-frame	RTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAAAASLPSSKEVA|gpaapggrrpglprpgppl	.
TALL051	UVSSA	CTBP1	+/+	-/-	4:1355245	4:1228343	splice-site	splice-site	inversion	downstream	downstream	2	1	1	63	388	medium	.	.	duplicates(1)	GGGCTGGGCTCGCACAAGTACACGCTGGATGTGGAGCTCTGCTCAG___AGGGCCTGAAGGTGCAGGAGAACGAGGACAACCTTGCTCTCATCCACGCCGCCCGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAG___CGCTTCACCCGCGTCGGGACCCACGGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGC?CAGG|GTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG___GCATTGCCGTCTGCAACGTGC	in-frame	GLGSHKYTLDVELCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQRFTRVGTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGER?R|VLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNV	.
TALL051	UVSSA	CTBP1	+/+	-/-	4:1355245	4:1238337	splice-site	splice-site	inversion	downstream	downstream	0	1	2	63	322	medium	.	.	duplicates(1)	CGCACCCCCGTTTCGCAGCGCTTCACCCGCGTCGGGACCCACGGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCGCAGG|GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCT...GTGGGGGCCCTGATGTACCACACCATCACTCTCACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG___GC	out-of-frame	rtpvsqRFTRVGTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGERRR|asdlrs*	.
TALL051	UVSSA	CTBP1	+/+	-/-	4:1366431	4:1228343	splice-site	splice-site	inversion	downstream	downstream	0	0	0	52	388	low	.	.	mismatches(1)	GCCACACATCCCCGACCACTTGCGGCCTGAGTATG|GTCCTGAACGAGGCTGTGGGcGCCCTGATGTACCACACCATCACTCTCACCAGGGAGG...CATTGCCGgCTGCAACcTGCCCGCGGCGcCTGTGGAGGAGACGGCCGACTCGACGCgGTGCCAgATCCTGAACCTGTA	out-of-frame	PHIPDHLRPEY|gpergcgrpdvphhhshqg	.
TALL051	PPP6R2	SBF1	+/+	-/-	22:50432329	22:50468461	splice-site	splice-site	inversion	downstream	downstream	1	2	1	198	514	medium	.	.	duplicates(1)	TGGACTTACTGCTG___GACTTGTTCTTTAAGTACACCTGGAATAACTTTTTGCACTTCCAAGTGGAACTATGCATAGCCGCTATTCTCTCCCACGCTGCCCGTGAGGAGAGGACAGAAGCCAGCGGATCCGAG...GCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|GGAGTGGGGAAGGCCAGGGCCAGATTCTGCAGCGCTTCCCAGAGAAGGACTGGGAGGACAACCCATTCCCCCAGGGCATCGAGCTG___TTTTGCCAGCCCAGCGGGTGGCAGCTGTGTCCCGAGAGGAATCCACCGACCTTCTTTGTTGCTGTCCTCACCGACATCAACTCCGAG...GCACCGAAGACGCTGGTACTGGTGTCGCGACTCGACCACACGGAGGTGTTCAGG___AACAGCCTTGGCCTCATCTATGCCATCCACGTGGAGGGCCTGAATGTGTGCCTGGAGAACGTGATTGGGAACCTGCTG	out-of-frame	LVQRILEAWEANDHTq|ewgrpgpdsaalpreglggqpippghravlpaqrvaavsreestdllcccphrhqlr	.
TALL051	PPP6R2	SBF1	+/+	-/-	22:50441026	22:50448650	splice-site	splice-site	inversion	downstream	downstream	0	1	0	284	1635	low	.	.	.	GCGGTGAGCAGGGGTCCCGGCCGGGAGGCCCCCCCGCTGCCCACAGTGGCCAGGACAGAGGAGGCTGTCGGCAG|GAGCTGCAGAGGCTGGAGACAGAGTTGGGCCAACCCGCTGAGCGCTGGAAGGACACCTGGGACCGGGTGAAGGCTGCACAGCGCCTCGAGGGCCGGCCAGACGGCCGT___GGCACCCCTAGCTCCCTCCTTGTGTCCACC	out-of-frame	AVSRGPGREAPPLPTVARTEEAVGr|scrgwrqswanplsagrtpgtg*	.
TALL051	LINC00672	LASP1(3134),LINC00672(264)	+/+	./+	17:38927377	17:38924904	exon	intergenic	duplication	downstream	upstream	0	1	2	29	24	medium	.	.	duplicates(2)	CAAAGATCTTTTCTGGAAAAAACTTTCCACATAGTTCTCTGACCCATTAGAGTTGAAGAAACTATGTATTTTGGGATTCAGAGTAGAATTGGCCTGCAAATCTGGGGTGTTTATTCCTTTTACAAGTCTATCATAATTGTTCTACATTTAATTTTCCTTTCTTGCTTAAAAGTAAACAAGGAGAGTCAGGAGTGGTGGCTCATGCCTGTAATCCCAGCACTCTGGGAGGCCG|AGGCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTG...TAGGGTAAGTTTCTGACCATCTCTGAGCCCCATCTATGAAAGACTCATAGGGAGGTTGAAATTGCACCACATGTACGATATCTGGCCCAGTGTAGGAAATGTATAAATGTTAGCTTCATCCCTCAGGGAAGCCCACTGAGATCCA	.	.	.
TALL051	RP11-98J23.2	SMN2	+/+	+/+	5:69920867	5:70063415	exon	splice-site	deletion/read-through	downstream	upstream	0	2	1	54	991	medium	.	.	duplicates(5)	CGGAAAAGTCTGCTAGAGCAGTACCATCTGGGTCTGGATCAAAAACGCAGAAAATACGTGGTTGGAGAGCTCATCTGGAATTTTGCCGATTTCATGACTAACCAGT|AGCGATGATTCTGACATTTGGGATGAT...GAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCA	.	.	.
TALL051	CAPN15	UBE2I	+/+	+/+	16:528029	16:1314020	splice-site	splice-site	deletion	downstream	upstream	1	2	0	68	1756	medium	.	.	duplicates(1)	CCCGCCGCTCTCCGGAGGCAGAAGTTGTGGATCGGCCGGCGGGGGCGAGCGGGCCCGGGGGCCGGGGCCGCGCTGCCCGGGCCGCGAGGACGAGGCGGCGCCGCCGGGCTGTGGAG|GGACTTTGAACATGTCGGGGATCGCCCTCAGCAGACTCGCCCAGGAGAGGAAAGCATGGAGGAAAGACCACCCATTT___GGTTTCGTGGCTGTCCCAACAAAAAATCCCGATGGCACGATGAACCTCATGAACTGGGAGTGCGCCATTCCAGGAAAGAAAGGG___ACTCCGTGGGAAGG	.	.	.
TALL051	LAIR1	KIAA0196	-/-	-/-	19:54351973	8:125071654	3'UTR	intron	translocation	upstream	downstream	0	1	2	179	5	medium	.	.	duplicates(2)	CGGTGGGATTTTGTAGTAGGGG|TAGAGAGGGAAACATTGCTTGGGATAGGGGAGCAGAGGAGGTCAGGAAACCCCATACAGGAATCAGGAGCCAACCAGGCGTGTGATGAGGTTTTGAAGCAAAAAGCAGA...CAGTTTGACCATCAAGTTCAGATTGTGAGAAATGCTTCAACCTCTGGTTTAATGGTAGAAAAATAAGTAAGTTGAATTAACATCTCTGAGCTTGTTCAGGGCTGGCACAGTTTCTTATTCTTCGTAAATGCTG	.	.	.
TALL051	DAZAP1	CSNK1G2	+/+	+/+	19:1407802	19:1969508	splice-site	splice-site	deletion	downstream	upstream	1	2	0	667	1080	medium	.	.	duplicates(1)	CGACGGAGCGGGTGACCTTCCGGAGGCGGGAGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|CTGTGAGCCGTGAGCTTTGAGGCGGTGGGATGTGTCAGCAGAATGTCTCCTGCCCCCGAGAGCGACCCCGAGGCCACTGAGAAGAGCAGCGCGGCCTGGCCGGCCCGAACGCCTGCGTCTCAGTAGCTGGGAGCCACGGGCCCACGCCCGCCCACCGGCCGCAGTGATGTTCTAGCCACAGAGGAGCCAAGACCTCAGGTTTCCAGAGACTTGGGATTTGCACGGCAGCAGAGTCACCG	out-of-frame	MNNSGADEIg|cep*	.
TALL051	TUSC2	XCR1	-/-	-/-	3:50327954	3:46018199	splice-site	3'UTR	deletion	upstream	downstream	0	1	1	292	12	medium	.	.	.	GGGCAGGTTATGGTAGTGCGGACTGCGGTGTGAGCAGAGCGGCCACGGGGCCCGCCATGCGCCGGCGGCCCTGACATGGGCGCCAGCGGGTCCAAAGCTCGGGGCCTGTGGCCCTTCGCCTCGGCGGCCGG...AAGCTTTGGTGCGGCCTCGGGGCCGAGCTGTGCCCCCCTTCGTATTCACGCGCCGCGG|CACATCCAGCCATCTCCCTGGGAGCGTTTCATATCTGACTCTTTATACTTCCAGTGATGTTTTGGCATCCCTAATAGACTGGCTCCCAAGGCAGTCTTTAATCAGGAGTCTTCCCCTAATCTAGCTCCTCAAGAACCCAAGGGAAGAGGCACAAAGAGAAGTATGAATAGGAAGATAGAAGGGTAACCCAGTCAGAGAG	out-of-frame	ALVRPRGRAVPPFVFTRRg|tsshlpgsvsyltlytssdvlaslidwlprqslirslpli*	.
TALL051	RP11-617F23.1	CTD-3065B20.3	-/.	-/.	15:90076522	15:90606344	exon	intron	deletion	downstream	upstream	23	0	0	256	55	low	.	.	duplicates(17),low_entropy(2),mismappers(13),mismatches(5)	.	.	.	.
TALL051	ZNF577	AC006272.1	-/-	-/-	19:51877282	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	4	4	1	92	25	low	.	.	duplicates(6),low_entropy(1),mismappers(3)	GTCAGGACTCATTAGACATCAGAAAATTCACTCAGGAGAGAAACCCTATAAATGCAGTGACTGTGGGAAAGCCTTCCTTACAAAGACAATGCTCATTGTACATCACAGAACTCACACGGGAGAGAGACCCTAT...TTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTG	out-of-frame	LDQSQKVLYKEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICP|gfiiiq*	.
TALL051	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	5	2	1	449	219	low	.	.	duplicates(3)	CAAGATCATCATCCGAGTGCAGACCACGCCGGACTACAGCCCCCAGGAAGCCTTTACCAACGCCATCACCGACCTCATCAGTGAGCTGTCCCTGCTGGAGGAGCGCTTCCGG___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCC...GGATCTGGCCCCAAAGGACCGCAATGGCACATCTGACCCCTTCGTCCGAGTGCGCTACAAGGGCCGGACACGGGAGACCTCG___ATCGTGAAGAAGTCATGCTACCCACGCTGGAATGAGACGTTgGAAaTTGAG	out-of-frame	KIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP*lsvs*glpshasctacrt|hwqqrpllhreggq*	.
TALL051	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	5	2	1	449	219	low	.	.	duplicates(3)	CAAGATCATCATCCGAGTGCAGACCACGCCGGACTACAGCCCCCAGGAAGCCTTTACCAACGCCATCACCGACCTCATCAGTGAGCTGTCCCTGCTGGAGGAGCGCTTCCGG___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCC...GGATCTGGCCCCAAAGGACCGCAATGGCACATCTGACCCCTTCGTCCGAGTGCGCTACAAGGGCCGGACACGGGAGACCTCG___ATCGTGAAGAAGTCATGCTACCCACGCTGGAATGAGACGTTgGAAaTTGAG	out-of-frame	KIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP*lsvs*glpshasctacrt|HWQQRPLLHREGGQ*	.
TALL051	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102639199	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	449	429	low	.	.	read_through(1)	GAACT|GGTGAAGTTCCTGGTGATGAATGACGAAGGACCCGTGGCTGAAACCAAGTGGTCCAGCGACACTCGCCTGCAGCAAG___CCCAGGCACTTCGGGCTGTCCCCGGCCCCCAGAGCCCGGGCACCGTGGTC...CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCA	.	.	.
TALL051	CBFA2T3	PIEZO1	-/-	-/-	16:88941020	16:88749479	splice-site	splice-site	deletion/read-through	upstream	downstream	4	3	1	743	79	low	.	.	duplicates(7),mismatches(2)	CGCGGGGTGGCCGGAGCCGAGTCCCCGGCATGGCCCAGGCGGCCGCCCCGCGCGCCCCAGCCCCGCCGCGCGCCTGAGCCCGGTGCGGCGCCAGAAGACAGCGCGCAGCCGCCCCTGAGTCGTGGAGGCGGGGACCAAGCTGGAAGGAGCAGCGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GcCAC...CCCGCCTGGACCAGCTCCTGGGACCCAGCT___GCAGCCGCTGGGAGACCCTCTCGCGACACATAGGGGTCACAAG___GCTGGACCTGAAGGACATCCCCAACGCCATCCGGCTGGTGGCCCCTGACCTGGGCATCTT	.	.	.
TALL051	MGMT	RP11-109A6.3(44288),EBF3(21560)	+/+	./+	10:129759341	10:129813723	splice-site	intergenic	deletion/read-through	downstream	upstream	1	6	0	119	15	low	.	.	duplicates(4),mismatches(1)	ATCGAAGAGTTCCCCGTGCCGGCTCTTCACCATCCCGTTTTCCAGCAAG___AGTCGTTCACCAGACAGGTGTTATGGAAGCTGCTGAAGGTTGTGAAATTCGGAGAAGTGATTTCTTACCAGCAATTAGCAGCCC...GGCAGGCAACCCCAAAGCCGCGCGAGCAGTGGGAGGAGCAATGAGAGGCAATCCT|GTCTTGGAAGAAACCATCACACCGAGGTCATTTCTGAGCACAGCGTGGAAGCTCCTATGTTTGCAG___ATTGATTCCTTGGAGTGGAATTAGTAAAAAGGATATGAATATTTTTAGTCTCTTGATATGTcAGACTGATTTCCAGAAGGCTTGTACCAATTTACTCTTCTACCGACAACTGTAAGAATACCCTTCCTCCATCAACAGCATTGTGTATTAGCTTTTAAGAAAAATCTTTTCTAATTTAA...AGAGCTTTGCGGGAGGACAAAAGAGACGATGTGGATAAAGTGCTCCGCAGATCATCAGGGGCGGCAAAG___GTTAGAGGACaGAGGCTGGATAACTTTGTGGAAAGTTCCTCTGTGGAACATTTTTATCTTGaCC	out-of-frame	AGNPKAARAVGGAMRGNP|vleetitprsflstawkllclqidslewn*	.
TALL051	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	5	1	51	25	low	.	.	duplicates(7),low_entropy(2)	CCGGGACCTGtCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCC...TG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTG	.	.	.
TALL051	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	3	2	2	62	30	low	.	.	duplicates(4),low_entropy(2)	AAAGCCAATGCAGGTGGCAGGAAGGTGAGGGGTAGTGGACCAATGGCAACCCTCTGTGGGAACAAGGGGCCGAGGCCACGCTGCCTGCATCTCGTGCTGGGGACCTGCATGCGCCAGCACCAGGGCTTGGACTGGATCTTACTCAGTCCATGGTGCCCAGCCTCTGCCCCAACATGCCCTCTGCATGTGACCGTCATGCCCTGGATGGAGCCACTCCTGGCTCACCCCACCTGCACTGCACTGTCCCCAGAGAGCC...CAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAACTGCAGCATATAGTATCATGAGCTAATAAACAATTCCTGCTTTAA	.	.	.
TALL051	PXDN(28539),MYT1L(15722)	PXDN	./-	-/-	2:1773391	2:1693134	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	4	9	180	low	.	.	duplicates(1),mismappers(2)	TGAAGGGGGAGCTGGAACTAACATCAGAGGCTTTAAGTGTCTGCCACTGGGCTAGAAG___AAGTATGTTCCTGGTCCTAGCAGCAACAAAGACAACGAAGAAGCTGATGGGTTGGCCTCAGAAGGATCTAGAGCATCAG|AGATCTTCGCTTTAACAGAATCAGAGAGATCCAACCTGGGGCATTCAGGCGGCTGAGGAACTTGAACACATT___GCTTCTCAATAATAATCAGATCAAGAGGATACCTAGTGGAGCATTTGAAGACTTGG	.	.	.
TALL051	ZBED4	CRELD2	+/+	+/+	22:49853989	22:49925417	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	0	217	252	low	.	.	duplicates(4),inconsistently_clipped(1)	CGGGCGGCGGGGCCGCGGGAGGGGCGCGGGGGCAGACAAAGCCGCGGTAATGAATGGAGCGTCCGCCCGCGCCGCCGTCGTCCGCAGCCGGCCGGGAGCCGCCCCAGAGGCCGGGCCGAG|ATGTGGACGAGTGCTCACTAGCAGAAAAAACCTGTGTGAGGAAAAACGAAAACTGCTACAATACTCCAGGGAGCTACGTCTGTGTGTGTCCTGACGGCTTCGAAGAAACGGAAGATGCCTGTGTGCCGCCGGCAGAGGCTG___AAGCCACAGAAGGAGAAAGCCCG	.	.	.
TALL051	ZBED4	CRELD2	+/+	+/+	22:49853989	22:49918759	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	217	251	low	.	.	duplicates(1),low_entropy(1)	CCGGCGGCGTCGCGGGCGGCGGGCGGCGGGGCCGCGGGAGGGGCGCGGGGGCAGACAAAGCCGCGGTAATGAATGGAGCGTCCGCCCGCGCCGCCGTCGTCCGCAGCCGGCCGGGAGCCGCCCCAGAGGCCGGGCCGAG|CGCTACCCGCCATGCGCC...GCAGGAAAATCAGAAAATTCAAGTCAGATGAAAAGAAAACAGTTAAAAACCCAGGAACTCCCTGGAGAGCGCACCCTGCTGGTGCCTCCACTGCTCGTGCCCCCCCAGCGCCCCCGCAACGTGCCC	.	.	.
TALL051	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	2	98	168	low	.	.	duplicates(7),low_entropy(1),mismatches(6)	TGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGC...ACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAAGGACAAGATGGAGGGCAGTGATTTTGAAAGCTCCGGAGGGCGAGGGTTAAAAA___AAGGCCGGGG	.	.	.
TALL051	AP001347.6	RBM11	+/+	+/+	21:14084144	21:14221097	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	3	79	9	low	.	.	duplicates(4),low_entropy(1)	CGGCGCTCGCGGACGGAAGCGGACAGACCTAGTTGGATCCTTATCCCACCAATCTGGCCCACCTTTGCTGCCATCTAACTCCGCTGACCGGCCCACCGTTCCTCCACTGTcCGCTGGTTGACCCGGGCAGCGGAGAGAGGAG|GGAGTTCTCGCTCTTCTGAACCAGCTAACCAAAGTTTTGAGAGCTGTGTTAAGATAAATTCACACAACTACAG___CAGTGGCATGTGTATAATCCAGTGCTGCAGCTTCCTTACTATGAAATGACAGCTCCACTTCCTAATAGTGCATCCGTGTCTTCCTCACTGAATCATGTTCCAGATCTTGAGGCTGGACCCAGCTCATATAAATGGACTCACCAACAACCAAGTGACTCTGACCTTT...CATCCGTGTCTTCCTCACTGAATCATGTTCCAGATCTTGAGGCTGGACCCAGCTCATATAAATGGACTCACCAACAACCAAGTGACTCTGACCTTTATCAGATGAATAAACGAAAGAGACAAAAGCAAACAAG...CAACGAATGTAGCCAAAAGTTCCGAAAGTCTAAGAAGAAGAAAAGATACTAGTATTACCTACAAATGAAACTTACCTACACTGATCTTAGTTCTCTTATGAAAAAAA[a]TAAGATGTTATCCCATCAAATAAAC	.	.	.
TALL051	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	5	1	0	43	59	low	.	.	duplicates(9),mismatches(1)	GCTGGATCTGCCCACTGTGCACTCCATCATCAGCAAAATGATCATTAATGAGGAGCTGATG___GCCTCCCTGGACCAGCCAACACAGACAGTGGTGATGCACCGCACTGAGCCCACTGCCCAGCAGAACCTGGC...CGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCA	out-of-frame	RDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKT	.
TALL051	CHFR	ANKLE2	-/-	-/-	12:132836707	12:132755133	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	5	1	171	424	low	.	.	duplicates(3),mismatches(1)	GGATCTTGCCTGTCTGCCCACTGTTGTTTATTTGTCTGAAATGTTTGGCCCCAGGGCAGCATCTACTGATCACTGACCAGTTGGCTACTGAACGGTGAAGGTCTGATGAGCTGATGAGCCGTCCCCTGGGCTTGAAATCTTTCCCGCGGCACAAACAGGCGCCCCTTCCTCTGTCGCTCACTTTTCACGGTTGTCTCCTTCTGAGGCG|GTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGGATTGAAATGTGGACCCATTACATCAACTACAAGGTTCATTTTTGAGAAAAAATTGGCTCAGGCTTTACTGGAGCAAGGAGGAAGGCTGTCTTCTTTCTACCACCATGAGGCAGGTGTCACAGCTCTCAGC...CAGGCTGGTTTTTCTGAAGACAGAGATTTTGGTTACAGTGTGGGCCTGAATCCTCCAGAGGAGGAAGCTGTGACATCCAAGACCTGCTCGGTGCCCCCTAGTGACACCGACACCTACAGAGCTGGAGCGACT	.	.	.
TALL051	LINC01097	RAB28	-/-	-/-	4:13527537	4:13479526	exon	splice-site	deletion/read-through	upstream	downstream	1	4	1	17	274	low	.	.	duplicates(6)	GGGTCCCACCGCGCAGGACGCCCCTTCCTGCTTCCGACGTCTGCTGTGGATCACACGCGGTCGCTGCCAAAGCCTCCATTTCGGTTCTGACCCAGTGACTTTGGGGACGCCCAGGGAGGAGATGTGGAGAGGATGTGGCCAAGGTGAACCAGCCAGT|ACCTCCTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGATAACATTGCCAG___GAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGCAGACAATAGGAGGCAAAATGTTGGATAAATATATCTATGGAGCACAG___TTGATTTGGAGCATATGCGAACAATAAAACCTGAAAAACACTTACGGTTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTCTCAG	.	.	.
TALL051	LINC01097	RAB28	-/-	-/-	4:13528922	4:13479526	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	27	274	low	.	.	.	GCCCGGGAAAGGCAGACCTGGCTCCCTCCTTTTATTTGCAAGCCTCAAAACCATCAAGACAGGCAAAG|ACCTCCTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGATAACATTGCCA	.	.	.
TALL051	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23232293	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	2	47	26	low	.	.	duplicates(3)	CCAG___GTTCTGACAACAAAGGAGATTGTGACATATTGCTGGGCCTAACACTAAG___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTGTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGAACGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGG___GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGCAAAGAGCCCTGGAATATGGAGAGACATGAGATGGTGGCCAAACCCCCAG___GTATGTGTTGTTATTTTGCCCAAGACCTTCGGCC...CAAAGAATAATACTGAGAAAATATGAAAAATGTGGACATCACAATTTACAGTTAAAAAAAGGCTATAAAAGTGTGGATGAGTACAAGGTGCACAAAGGAAGTTATAATGGATTTAACCAGTGTTTGACAAC	.	.	.
TALL051	RP11-15H20.6	ZNF724P	-/-	-/-	19:23274076	19:23232293	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	67	26	low	.	.	duplicates(1)	TTGGGATCGGTCTCTGCTGTTTTACGTCCTCCACCTCGGGAGCCCCCGGTGACTGTCACAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGATGCCAGGACATCCTGGAAGCTGGGAAAAG|GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTGTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAG	.	.	.
TALL051	MAMSTR	NTN5	-/-	-/-	19:48713716	19:48664767	splice-site	splice-site	deletion/read-through	upstream	downstream	2	2	1	40	39	low	.	.	duplicates(3),mismatches(1)	GGAGCCACACGTTGCGAGTGGGTGGGGTTGCGCCCTGTGGGCATGGCTTATGGGCGCTCGCCCTCTTGGCTGCTCcAGGTCAAGCCCAGCGCAGCATCTCACAGGCCACCTCTTCCACGcGCCGCGGATACCC...CGGCTCCAACTCCCACTCCGGCTCCTGCTGCAGCTCCAGCCCTGACCCCTTCCTCAGGGCCGGGCTCAGCGGCTCTGACTCTGGAGGAGGAGCTGCAGGAAGCGATCCGGAGGGCGCAG___TTGCTTCCTAACCGGGGCATCGATGACATCCTGGAGGATCAGGTGGAGCCTGATG|CCTGCTCCTGCAACCAGCACGCCCGACGCTGCCGGTTCAACTCTGAGCTGTTCAGACTGTCGGGCGGCCGGAGTGGGGGTGTTTGTGAGCGGTGCCGCC...CAGCTGGGCGGCACTGCCACTACTGCCAACCTGGGTTCTGGAGGGACCCTAGCCAGCCTATCTTCAGCCGCAGGGCCTGCAGAG___CCTGCCAGTGCCACCCTATTGGGGCAACAGGAGGAACCgGCAACCAGACCAGTGGGCAGTGCACCTGCAAGTTAGGGGTCACAGGCCTGACCTGCAACCGCTGTGGCC	in-frame	APTPTPAPAAAPALTPSSGPGSAALTLEEELQEAIRRAQLLPNRGIDDILEDQVEPD|aCSCNQHARRCRFNSELFRLSGGRSGGVCERCR	.
TALL051	MAMSTR	NTN5	-/-	-/-	19:48713860	19:48664767	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	1	44	39	low	.	.	.	GCGCCCTGTGGGCATGGCTTATGGGCGCTCGCCCTCTTGGCTGCTCcAGGTCAAGCCCAGCGCAGCATCTCACAGGCCACCTCTTCCACGcGCCGCGGATACCCCGGGGACGGCTCCGGCTCCAACTCCCACTCCGGCTCCTGCTGCAGCTCCAGCCCTGACCCCTTCCTCAGGGCCGGGCTCAGCGGCTCTGACTCTGGAGGAGGAGCTGCAGGAAGCGATCCGGAGGGCGCAG|CCTGCTCCTGCAACCAGCACGCCCGACG...CAGCTGGGCGGCACTGCCACTACTGCCAACCTGGGTTCTGGAGGGACCCTAGCCAGCCTATCTTCAGCCGCAGGGCCTGCAGAGGTGAGTGTGGCCTGCAGACAGGCCTGGGGGGAGCAGAGGTAGGGCTGGA	out-of-frame	rpvgmaygrspswllqVKPSAASHRPPLPRAADTPGTAPAPTPTPAPAAAPALTPSSGPGSAALTLEEELQEAIRRAQ|papatstpd	.
TALL051	IL9R	WASH6P	+/+	+/+	X:156004565	X:156021681	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	4	272	240	low	.	.	.	GCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GATCTCCCAGCAGGTAGAGCAGAGCCGGAGCCAGG	out-of-frame	MGLGRCIWEVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|dlpagraepep	.
TALL051	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	178	369	low	.	.	read_through(1)	GATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAaACGCCCCCGCCACAGGATCCAGAGCAAGCACCGCCCCCTGGACGAGCGGGCCCTGCAG___CCCTCcCAGGAGAAGCTGAAGGAaTTTCCTGTGTGCGTGAGCACCAAGCCGGAGCCCGAG	out-of-frame	MPQTCDGTGQMHLGr|cspvpstllqstcrnmapssraprtlacrnapatgsrastapwtsgpcspprrs*	.
TALL051	IL9R	WASH6P	+/+	+/+	X:156004565	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	272	369	low	.	.	read_through(1)	CTGGGAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCAAGCACCGCCCC...CCCTCcCAGGAGAAGC	out-of-frame	WE|vfssakypapehlqeygsiftgaqdpglqrrprhriqskhr	.
TALL051	ST6GALNAC4	RP11-203J24.8	-/+	+/+	9:127916161	9:127940395	exon	splice-site	deletion/read-through/3'-3'	downstream	upstream	3	2	0	57	46	low	.	.	duplicates(2),mismatches(2)	CCTTGACTCAGGCAGTCGAGATGAACTGCCCCCCACATCCAGCTCTCTCTCTCACAGCCCGGGGCTTCTGCAGTAAAGACAAGAGCGGCTGAACTGAACTTCACAACCCCAGTTCCACGTAGGCTTTGCCTG|TTTTCTCCCCAGGAATCTGGAACGATGAAGGTGATGATTGTGCCTGTGGCCAAGACCGGGAGAACCCTGGATCCCTACACCTTCCCCACCCCTGGAATGTCACTATACATATCTGACTTCTTCTGATGTTGCCTTTGACCCTAAAGTCAATATGATAAAGTAACAAG___AAGCTGGGACAGAGGAACAAACACAGCCCACTCAAGCAGTGGTGGCAACATTCTGTTAGAAAGGAGGGGAGTCAAAGAAAAAAAC	.	.	.
TALL051	CD82	RP11-244C20.2(5802),RP11-45A12.1(32141)	+/+	./+	11:44615373	11:44662722	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	2	640	9	low	.	.	duplicates(1)	GCAGCGCGGAGCAGAAAGCAGAACCCGCAG___AGTCCTCCCTGCTGCTGTGTGGACGACACGTGGGCACAGGCAGAAGTGGGCCCTGTGACCAGCTGCACTGGTTTCGTGGAAG___GAAGCTCCAGGACTGGCGGG...CCTGATCCTCATTGCCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGCAAG___CTGAAGCAGGAaATGGGCGGCATCGTGACTGAGCTCATTCGAGACTACAACAGCAGTCGCGAGGACAGCCTGCAGGATGCCTGGGACTACGTGCAGGCTCAG|ACCAGGCTCCTAGATGTTGGGGACTGAACCCTGGCTCCGTTCCACCTGGCTTGTCACTACGTTGTCATTCACAAACGGTGAGCTAATCACAGAAGCAACCTGTAGGCCAGTGATGAGCATGAAGcGAGATAAAAGCCTGTAGGTTTCTCAGTGTCTGATGCACCTCTTAATATTGGAATTAAGATAAACATCATGGCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCC	out-of-frame	LILIAQVTAGALFYFNMGKLKQEMGGIVTELIRDYNSSREDSLQDAWDYVQAQ|trlldvgd*	.
TALL051	RALY	RPS2P1(12211),ASIP(59068)	+/+	./+	20:34078553	20:34135501	splice-site	intergenic	deletion/read-through	downstream	upstream	3	2	0	2802	27	low	.	.	duplicates(6)	CACAGATCAAGTCCAATATCGATGCCCTGCTGAGCCGCTTGGAGCAGATCGCTGCGGAGCAAAAGGCCAATCCAG___ATGGCAAGAAGAAGGGTGATGGAGGTGGCGCCGGCGGCGGCGGCGGTGGTGGTGGC...CCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAAGAGCTG___GAACACAGCCAGGACACAGACGCGGATGATGGGGCCTTGCAGTAAGCAG|TCTACAGGTGTAACCAGCAGCTCCGAAGAGACAG?AACCATCAAGAACAGGCCATAATGAAGATGGCGGTTTTGTCAAAAGAAAAGGGGGAAGTGTGAGGAAAAGAAAAAGAGATCAGATTGTTACTGTGTCTATCTAGGAAAAGGAAGACAAAAGAAACTCCATTTTGATCTGTACTAAGAAAAATTGTTCTGCTTTGAGATGCTGTTAATCTGTAACTCTTGTCCCAACCCTGTGCTCGCAAAAACATGTGCTG	out-of-frame	QGEARTRDDGDEEGLLTHSEEELEHSQDTDADDGALQ*a|vyrcnqqlrrd?nhqeqaimkmavlskekgev*	.
TALL051	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528417	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	2	57	222	low	.	.	duplicates(3),mismappers(1)	CTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGtCCTGAAAGACGTCATTACTCTACGGAGACATGTGGAAACAAAAGTTAG	.	.	.
TALL051	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528951	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	1	45	222	low	.	.	duplicates(1)	GGAAAATTTGTCAAATGTACCGAGCAATTAGAATTGTTACCAGGAGAAAATATCAATCTACTTGCTGGAGGGTCAAAAGAAAAAATAG___ACATGAAAAAACTGCTTCGTAACATGTGAAGTCCAGATCCAAGGGAACCTCAGAAATCCATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA|GTTATCAATACTCTGGCTG...ATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTG	.	.	.
TALL051	IKBKG	CTAG1A	+/+	+/+	X:154564020	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	349	20	low	.	.	duplicates(3),low_entropy(1)	GCAAACTGAAGGCCAGCTGTCAGGAGTCGGCCAG___GATCGAGGACATGAGGAAGCGGCATGTCGAGGTCTCCCAGGCCCCCTTGCCCCCCGCCCCTG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTCATTGTGG	out-of-frame	KLKASCQESARIEDMRKRHVEVSQAPLPPAP|ad*	.
TALL051	IKBKG	CTAG1A	+/+	+/+	X:154552189	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	341	20	low	.	.	duplicates(4)	GCAGATCAGGACGTACTGGGCGAAGAGTCTCCTCTGGGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCC	out-of-frame	ADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQELR|ad*	.
TALL051	IKBKG	CTAG1A	+/+	+/+	X:154556376	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	283	20	low	.	.	.	TGGGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAG___ATGCCATCCGGCAGAGCAACCAGATTCTGCGGGAGCGCTGCG...GGAGGCCAGGAAACTGGTGGAGAGACTCGGCCTGGAGAAGCTCGATCTGAAGAGGCAGAAGGAGCAGGCTCTGCGGGAGGTGGAGCACCTGAAGAGATGCCAGCAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCC	out-of-frame	EARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQ|ptdccrppptaalhqllspaafpvdvdhavlsarvfgsaslraealspawrpflghas	.
TALL051	BEND4	SLC30A9	-/-	+/-	4:42125583	4:42031457	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	2	1	77	17	low	.	.	duplicates(5),mismatches(1)	GGCCGACGTGGATCCTCTGTCAACCTCTCCTGTGCATACATTAGGTGGCTGGACTTCCCCAGCAACGTCCGAATCCCATGGCCACCCATCTTCATCTACACTGCCAGAAGAGGAGGAGGAGGAGGACGAGGAAGGCTATTGTCCTCGATGCCAAGAGCTGGAGCAGGAGGTTATTTCACTGCAACAAGAAAATGAAGAGCTCAGAAGGAAATTAGAGAGCATCCCAG___TGCCCTGCCAGACCGTTTTAGATTACTTGAAGATGGTTCTGCAGCACCACAACCAACTCCTGATACCACAGCCAGCTGACCAGCCGACAGAG|CATCTTCTTACATTGACGACTAATCACTTCCAATTGAAGTCAGGAGAAAGCTGCTCAACTaCACTATTTAATGGATTTTGAAATATGTAAATTTCCTCTGCACTTGCATGGAAATCTGAAAAACACTTCTGGAACTATAGGTTGG...TTTTTTTTTTTTCATGTATTCATTCTTTTATTGTCCATTGTTTTAACTTGACTGAATACATGATCAACAAGAGCACTGTACTCCTGGC	out-of-frame	ADVDPLSTSPVHTLGGWTSPATSESHGHPSSSTLPEEEEEEDEEGYCPRCQELEQEVISLQQENEELRRKLESIPVPCQTVLDYLKMVLQHHNQLLIPQPADQPTE|hlltlttnhfqlksgescsttlfngf*	.
TALL051	POLR3E	AC092338.5	+/+	+/+	16:22326278	16:22385734	splice-site	exon	deletion/read-through	downstream	upstream	1	2	1	246	12	low	.	.	duplicates(5),low_entropy(1),mismatches(1)	GCAGGAGGCGGAGGAGGAGCCCATGGACACTTCCCCCAGCGGCCTCCACAGCAAGCTGGCCAACGGGCTGCCTCTCGGGCGGGCTGCGGGCACAGACAGCTTCAACGGGCACCCGCCCCAGGGCTGCGCCAGCACCCCTGTGGCTCGGGAACTGAAGGCCTTCGTGGAGGCCACCTTTCAGAGACAGTTTGTGCTCACGCTGAGCGAACTCAAGCGCCTCTTCAATCTGCACTTGGCCAGCCTGCCCCCCGGCCACACACTCTTCAGCGGCATCTCGGACCGCATGCTACAGGACACGGTGCTGGCCGCCGGTTGCAAGCAGATACTGGTGCCT|GCTGTTGCCATCGTCATTGCTTTCCTTGCTGCTGCCAGCCTTTACGCTGGGATGTATCACGTGAGGCGTTTCAAACCTAAAAGAAGCCCCAAAGAGAACCTCCTCTTGGAATCTAAACAGAATCTCGCCTGGACTCCTGTCATTTTATCCGTGAGATAGATCTTGCCCCAGAAATACTTTTACCTTTTTC	out-of-frame	QEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVP|avaiviaflaaaslyagmyhvrrfkpkrspkenllleskqnlawtpvilsvr*	.
TALL051	MPG	HBZ	+/+	+/+	16:83256	16:152888	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	4	0	490	29	low	.	.	duplicates(1)	ACCGAGGCATGTTCATGAAGCCGGGGACCCTGTACGTGTACATCATTTACGGCATGTACTTCTGCATGAACATCTCCAGCCAGG|TGCAGCTGCCCACCCTGCCGCCATGTCTCTGACCAAGACTGAGAGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGGAGAG___GCTCTTCCTCAGCCACCCGCAGACCAAGACCTACTTCCC...CGCCCTGTCCAAGCTGAGCGAGCTGCACGCCTACATCCTGCGCGTGGACCCGGTCAACTTCAAG___CTCCTGTCCCACTGCCTGCTGGTCACCCTGGCCGCGCGCTTCCCCGCCGACTTCACGGCCGAGGCCCAC	out-of-frame	RGMFMKPGTLYVYIIYGMYFCMNISSQ|vqlptlppcl*	.
TALL051	MPG	HBZ	+/+	+/+	16:83256	16:153892	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	490	29	low	.	.	.	AAGCCGGGGACCCTGTACGTGTACATCATTTACGGCATGTACTTCTGCATGAACATCTCCAGCCAGG|GCTCTTCCTCAGCCACCCGCAGACCAAGACCTACTTCCCGCACTTCGACCTGCACCCGGGGTCCGCGCAGTTGCGCGCGCACGGCTCCAAGGTGGTGGCCGCCGTGGGCGACGCGGTGAAGAGCATCGACGACATCGGCGGCGCCCTGTCCAAGCTGAGCGAGCTGC	out-of-frame	KPGTLYVYIIYGMYFCMNISSQ|gsssatrrprptsrtstctrgprscartaprwwppwatr*	.
TALL051	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	1	246	507	low	.	.	.	CCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAA...CCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTATCTCTGTTTCTG	in-frame	RLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFP	.
TALL051	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	2	192	507	low	.	.	duplicates(3)	GAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTG	out-of-frame	NIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL051	HK1	TACR2(8313),ATP5G1P7(7792)	+/+	./+	10:69395105	10:69425180	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	296	15	low	.	.	duplicates(2)	AAGGGATTCCTCcTCCGAGGGCAGATCTCTGAGACGCTGAAGACCCGGGGCATCTTTGAGACCAAGTTTCTCTCTCAGATCGAGAG|GAAATCCACAAAGCCAGGAATaATGATGACAGCCTTGATGACAGCCTTGATGACAGCCTTGATGACAGCCATATCCTCCCTGTCCTCCACTGTGATTGGCTCAATGATAACTTCTAATTAAATGAATGAATGGTGCGCCGATGAATGAACACACTGGAACAACTTGGATATG	out-of-frame	KGFLlRGQISETLKTRGIFETKFLSQIEr|kstkpgimmtalmtalmtalmtaisslsstvigsmitsn*	.
TALL051	ZNF567	ZNF790-AS1	+/+	+/+	19:36727214	19:36801203	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	20	28	low	.	.	duplicates(1),low_entropy(1),mismappers(1)	ATTGCCACCTCATCTCTGTGG___GGTGTCACATGACCAAACCTGATGTGATCCTCAAGTTGGAACGAGGAGAAGAGCCATGGACATCATTTGCAGGTCATACCTGCTTGG___GCTGGAGTACAATGGTGCGATCTCGGCTGACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAG|GTCCAGATTTGGAACAAATCTCTCTAGAGATTGAACAG___AGCTGCGCCTGGATCCCTCAGCAGTGAGGAGACCTGAAGACCAGAGGAAACACAGCAA___...GTCC...___GGGCTCACCAGAGAAGACAGGGCAAGGTGAGGGGGATCTCCTAGCAGAGGAAACAACATGCGCCAATCAAGCAAAGATATTTTTGTGCATTCAAGGAACACAGAGAGGAAAGACAGTGGCAGATGGAGACGTATAAAGCAGGGATCCTGTTATGAAAAGCCCTAAAAAATAGGGTATAGAGTTTGGGC	out-of-frame	CHLISVGCHMTKPDVILKLERGEEPWTSFAGHTCLgwstmvrsrltatsasrvqaillpqppk*lglq|vqiwnksl*	.
TALL051	MTG1	CYP2E1	+/+	+/+	10:133402773	10:133531585	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	94	23	low	.	.	duplicates(1)	CTGGCGTGCTGGCTCCTCGGATTGAAAGTGTGGAGACAGGCCTGAAGCTGGCCCTGTGTG___GAACGGTGCTGGACCACCTGGTCGGGGAGGAGACCATGGCTGACTACCTGCTGTACACCCTCAACAAACACCAGCGCTTTGG|GAATCATTTTTAATAATGGACCTACCTGGAAGGACATCCGGCGGTTTTCCCTGACCACCCTCCGGAACTATGGGATGGG...CGGATCCAGAGGGAGGCCCACTTCCTGCTGGAAGCACTCAGGAAGACCCAAG___GCCAGCCTTTCGACCCCACCTTCCTCATCGGCTGCGCGCCCTGCAACGTCATAGCCGACATCCTCTTCCGCAAGCATTTT...GTTCTTTGCGGGGACAGAGACCACCAGCACAACTCTGAGATATGGGCTCCTGATTCTCATGAAATACCCTGAGATCGAAG___AGAAGCTCCATGAAGAAATTGACAGGGTGATTGGGCCAAGCCGAATCCCTGCC...GATTCAGCGGTTCATCACCCTCGTGCCCTCCAACCTGCCCCATGAAGCAACCCGAGACACCATTTTCAGAGGATACCTCATCCCCAAGGTTAAGCAATGAGCCTGCAGCACACAGCATGAACACCATCCTATC	out-of-frame	GVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFg|nhf*	.
TALL051	TTC33	AC108105.1(192654),SNORA63(141894)	-/-	./-	5:40746798	5:40513069	splice-site	intergenic	deletion/read-through	upstream	downstream	2	1	0	164	36	low	.	.	duplicates(4)	GGAAAGACTGAGTCGTCTTTCCTTTGCCCGCTTCTGTGGACTGTTCGAACGCCCAGGGGTGGGCCAAACCCGTTTCTTAGGAAACCAGGAATCCAGGGAAGGCAG___AATGGCTTCCTTTGGGTGGAAGAGGAAAATTGGTGAGAAGGTCTCAAAGGTCACTTCCCAGCAGTTTGAAGCTGAAGCTGCTGATGAGAAGGATGTAGTTGACAACGATGAAGGGAACTGGCTTCATGCCATTAAACGTAGGAAAGAAATTCTTCTTGAAGGCTGTGCTGAGAAAAGTAAACAGCTGAAGGATGAAGGAGCCAGTTTGGCTGAAAATAAAAG|GAGACCTTAAGATAGAAAAACTGC?AGGAGGGACCTGTAGGTCTGCTTTCTCCACTCATGTTTGGAGAACACGTCTCCAAAGAAATTCATCTGAACTTGATGCAGAGATTCCTG	out-of-frame	MASFGWKRKIGEKVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAENKr|rp*	.
TALL051	TAF8	C6orf132(7043),GUCA1A(5744)	+/+	./+	6:42077239	6:42149662	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	187	12	low	.	.	duplicates(5),mismappers(1)	CCCAGAGGCGCGATGTGGAGCGGGCACTTACCCGTTTCATGGCCAAGACAGGCGAGACTCAGAGTCTTTTCAAAGATGACGTCAGCACATTTCCAT___CTCTTCTTCCGTCTGAACTGGAGATGCAACAAATGG...GAATGGGGAGGAGAACATCATCGATAACCCTTATCTGCGaCCGGTGAAGAAGCCCAAGATCCGCAGGAAGAA|GTAGCCAAAGCTCCCTACCCTGCTTTGGGCATGGAGATGCTAAACAGAGAACAGCAAAAACACAACAGAGACCATGAGAGGCTGCAGAAGAGCCgTGTCAATTCAACAAAGAAACTCAAGAAGGAAAATTCCACTGAGATCCGGGAGACAGGG...ATGTGTGTGTGCACAAGGGCATGTGTCTACATTTTAAAAAATGGATTGGCCGGGTGCAGTGGCTCATGTCTCCCAACACTTTCGGAGGCCGAGGTGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGG	out-of-frame	NGEENIIDNPYLRPVKKPKIRRKk|*	.
TALL051	MCAT	TTLL1	-/-	-/-	22:43141162	22:43075590	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	1	132	24	low	.	.	duplicates(1)	CTACGCCGCCGCCCGCCGCGTGCTGGGCTACGACCTGCTGGAACTGAGCCTGCACGGGCCGCAGGAGACCCTGGACCGCACCGTGCACTGTCAGCCCGCGATCTTCGTGGCATCGCTGGCCGCTGTCGAGAAACTACATCACCTGCAGCCCTCG___GTGATTGAGAACTGTGTTGCTGCTGCTGGATTCAGTGTGGGAGAGTTTGCAGCCCTAGTGTTTGCCGGAGCCATGGAATTTGCTGAAG|GATTATGGCAGGGAAAGTAAAATGGGTCACTGATATCGAGAAGTCAGTGCTGATCAATAACTTTGAAAAGAGAGGATGGGTCCAAGTGACAGAAAACGAGGACTGGAATTTTTACTG___GATGAGTGTGCAAACCATCCGAAATGTGTTCAGCGTTGAAGCTGGATATCGGCTCTCAGATGACCAAATAGTCAACCATTTTCCAAA	out-of-frame	YAAARRVLGYDLLELSLHGPQETLDRTVHCQPAIFVASLAAVEKLHHLQPSVIENCVAAAGFSVGEFAALVFAGAMEFAE|glwqgk*	.
TALL051	EZH1	PLEKHH3	-/-	-/-	17:42703740	17:42674409	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	122	12	low	.	.	duplicates(4),low_entropy(1)	GAACGAATTCATTTCTGAATACTGTGGTGAG___CTCATCTCTCAGGATGAGGCTGATCGACGCGGAAAGGTCTATGACAAATACATGTCCAGCTTCCTCTTCAACCTCAATAATG___ATTTTGTAGTGGATGCTACTCGGAAAGGAAACAAAATTCGATTTGCAAATCATTCAGTGAATCCCAACTGTTATGCCAAAG|GGTCCCCTGGAAGTGACGCTGACTCAGCCAGTGAGGAGCGGGCCTGTCTCCAACAG___GCTGCAGAGCTGGGAGGAGACTTGGAGCCTCATCCCGGAGAAAGGGCTGCCGGAGGACGACCCGGACATCGTTGTGAAAG___GTTGGCTGTACCGGGAGCCCCGCGGAGGAaGG	out-of-frame	NEFISEYCGELISQDEADRRGKVYDKYMSSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAK|gspgsdadsaseeraclqqaaelggdlephpgeraaggrpghrcerlavpgaprrk	.
TALL051	C5orf56	RAD50	+/+	+/+	5:132449689	5:132556332	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	3	0	148	8	low	.	.	duplicates(1),mismatches(1)	AGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ATATCTATTGCTGGGAGCACTGATCGGAATGGATTACCTCTACATTCTTCATATTTGCAGACTGCTTTTAGTTTTAGTTCCCAGACTTTTGGTCTTAAAGACGCCTTTACACTAAAAAAT...GGGGGACCTCAAAGAGCGT___ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|diycweh*	.
TALL051	TBC1D22A	TBC1D22A(29486),RP1-111J24.1(54181)	+/+	./+	22:47111603	22:47205185	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	64	3	low	.	.	.	TG___AGCAAGTGCACCGGCACCTGGACCAACACGAAGTGAGATACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCATCCGCCTGTGGGACACCTACCAG___TCTGAACCGGACGGCTTTTCTCATTTCCACTTGTACGTGTGCGCTGCTTTTCTCGTGAGATGGAGGAAGGAAATACTAGAAGAAAAAGATTTTCAA|CCCACGGCCACCCCCAGAAGCTGAGACATCCTGAtGGGGCCTCCGTTCCTGGCCACCTCCAAGCTCACACATCACGGAGCCCCCAAGCCTGGAGCAGCCCTCTCTGG...GAGAGACCCaGAGCCAGGGCCACCCACCCGAACTTACCCTGGATCCTGACCCACAGAAACTGCAAGTCGATAAAG___GCACTGGGCTAAATGCATCAAAAGGATCTCACCATCTTCCCAGCAGCCCACAGGGAGC	out-of-frame	EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQ|ptatprs*	.
TALL051	MTIF3	RNY1P1(3405),GTF3A(18552)	-/-	./-	13:27437116	13:27405992	splice-site	intergenic	deletion/read-through	upstream	downstream	2	0	1	105	3	low	.	.	duplicates(1)	GGCTGAGGGAGATGGAGAAGGCGAACCCCAAAACTG___GACCAACCCTGAGAAAGGAACTGATTTTGTCTTCAAATATTGGACAACATGATTTGGACACAAAGACTAAACAGATTCAGCAGTGGATTAAGAAAAAACACCTAGTCCAGATTACCATAAAGAAAGGAAAAAATGTAGACGTGTCAGAAAATGAAATG|ATGCTGTGTGGCCACACCCTCCATGTCAGGGAGAAACCTGATTCAGCAGAGATGACTTCATGAGGCTGTGGAATATGAATTTGTATGATTCAAGGACTCATGTTGCCTCTCCTGG	out-of-frame	LREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQITIKKGKNVDVSENEM|mlcghtlhvrekpdsaemts*	.
TALL051	SLC25A5-AS1	SLC25A43	-/-	+/-	X:119467487	X:119444093	exon	intron	deletion/read-through/5'-5'	upstream	downstream	2	1	0	10	6	low	.	.	duplicates(3)	GGCCTCCCCCGGGCAGTTATCTCCTTGCCGCGACCTTGAGGTCTTCG___ACCGTGcGCTGTCCTGGAGCCAGTGAAACCAGACGAAATTAAGGGAACAGCAGACGAAGGAACTGCCACCGTGCCCCAGACCCTGG...GGACTGGGCTGGGGGTGGGGAAATGATTTTAGCCAGAAGACAAATATAGAGGTTGTACCCAGAAGGTTAAGAGGCTTAGGAAGGTTAAGAACTACGTTgACATTTGGCTCCCAGGACCCCAG|CTCAAAGAATCAATATTCTATGCTTTAAAAATATAGAATGGCTGGGTGCAGTGGCTCATGCCTGTAATTCCAGCACTTTGG...AGAAAAAAAAATTAGCCGGGCATGATGGCATGTACCTGTAGTCCCAGCTACTCAGGAGGGAGTAGATCCTGAGGCAGGAGGATCGACCGAGCCCAGGAAGTTGAGGCTGCAGTGAGCCGAGATTGCACCACGG	.	.	.
TALL051	ATMIN	RP11-303E16.6	+/+	+/+	16:81036206	16:81076424	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	175	6	low	.	.	.	GCCGTCCCGGCGGCCACGACAGGAGCCGCCGCCGCCGCCTCGGGCCCGTGGGTGCCCCCGGGACCCCGACTGAGGGGCAGCCGGCCGCGGCCCGCGGGGGCGACGCAGCAGCCCGCTGTCCCC...CGCCGCCGGCGGGGGAGCTGATCCAGCCGTCGGTGAGCGAGCTGTCCCGGGCCGTGCGGACCAACATCCTGTGCACCGTGCGCGGCTGCGGCAAGATCCTGCCCAACAGCCCCGCGCTCAACATGCACCTAGTCAAGAGCCACCGCCTGCAG|GTCACAGGAACCTCAAGTATTTCACAGAATGATGCCAAGGAGCGCAGTTTCTACACCATCCCTCCCGATCAGACCACATCTATTCCAATCTCAGTCTCAAACTCTTCCCCTTTTTCAACTCACATTAATGAATTCACTAAGT	out-of-frame	PPAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQ|vtgtssisqndakersfytippdqttsipisvsnsspfsthineftk	.
TALL051	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510767	7:22335967	exon	intron	deletion/read-through	upstream	downstream	0	0	3	2561	1	low	.	.	duplicates(2),low_entropy(2),mismappers(1),mismatches(13)	GATTATCCTGAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTG...|...GTGTTGAGAGG	.	.	.
TALL051	MPG	NPRL3(2619),HBZ(11208)	+/+	./+	16:83256	16:141479	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	490	9	low	.	.	duplicates(1)	GGCGGCTGCTGGGCTCCGCGCCGGGGTCCGAGTCCCACGAAGCCCCGGCCCGAGCCGCCGGATGCCCGCGCGCAGCGGGGCCCAG___TTTTGCCGACGGATGGGGCAAAAGAAGCAGCGACCAGCTAGAGCAGGG...GGAGACCGAGGCATACCTGGGGCCAGAGGATGAAGCCGCCCACTCAAGGGGTGGCCGGCAGACCCCCCGCAACCGAGGCATGTTCATGAAGCCGGGGACCCTGTACGTGTACATCATTTACGGCATGTACTTCTGCATGAACATCTCCAGCCAGG|AACAAATTTGTGGATTGGCCTCACCAGGGTGAAGGGTACGTGCATTTGAAATGGCTCAACAGTACCAACAG___GTGGTCTGTTCTTGGATGGTCT	out-of-frame	ETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQ|eqicglaspg*	.
TALL051	RNH1	LRRC56	-/+	+/+	11:507266	11:539580	5'UTR	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	1	0	27	21	low	.	.	duplicates(6),mismappers(2)	CTCAATAGCGCCAGGCCCGCGTCTACAAGAAGCCCGACCAAGGCCGGCGTGGGCGAGGCCTGGCTAGACGCTGACGCACCGCTGGAGCTACTGACCTCGGGACGACTGGCGGACGGTCGCGGGCCTGGAGACCCAGAGCGAGACGGCCTACTTCGTTCTCGAGCCAGCAGAACGGGTTGAACGTGTCGACAACCCCACCCGCCAGTCAGCGGCGCGGGCGTGTTCGAGCCGGCTCGTGGGCGTGGTCAG|TAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCTGCCCGCCGCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCCGCCAGACGTCTGCATCTTTAAGGGGCAACACCAG___CAGGTGACATGTGAATGGATCTGGGCTGGGACAGATCCCGTGGGCCTCGGCGGAGCACC	.	.	.
TALL051	C2orf76	STEAP3(21443),C2orf76(15130)	-/-	./-	2:119311622	2:119287095	splice-site	intergenic	deletion/read-through	upstream	downstream	1	0	1	55	7	low	.	.	duplicates(1),mismappers(2)	CGCAATTTCAAACCTGTAGTGTATCACGGAGTGAATTTGGACCAAACTGTAAAGGAATTTATCGTATTTCTAAAGCAAG___ATgTCCCTTTAAGGACCAACCTGCCACCACCATTCAGAAATTATAAATATG___ATGCACTAAAGATTATTCATCAAGCACATAAATCAAAG___ACAAATGAACTTGTGTTGAGTTTGGAAGATGACGAAAGACTCCTGCTGAAAGAAGACAGCACTCTGAAAGCAGCTGGAATCG|ATGGGGAAGGGGCACTTGGAGGTAAAGTGACCTGCCC	out-of-frame	RNFKPVVYHGVNLDQTVKEFIVFLKQDvPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGI|dgegalggkvtc	.
TALL051	EBPL	ARL11(6754),EBPL(20097)	-/-	./-	13:49691254	13:49640626	splice-site	intergenic	deletion/read-through	upstream	downstream	1	1	0	578	4	low	.	.	mismappers(1)	CGAGGCTGGCGGTTCGCTGCTGCTGTGCGCCGCGCTGCTGGCGGCGGGCTGCGCCCTGGGCCTGCGCCTGGGCCGCGGGCAGGGGGCGGCGGACCGCGGGGCGCTCATCTGGCTCTGCTACGACGCGCTGGTGCACTTCGCGCTG|CTCAGTGATTTGCTCAAGAAACACGAGTCAAGGCCTGGCACAGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCCGATGCAGGAGGATCACTTGAGCCCAGGAGGTGGAGACCAACCTGGGCAAGATG___GTTAAGCCAGCACTTAACACCACATGAAATTGAAGTTCATGGAATTCAAAGACGAG___GCCCAAGAGGCAGCAGCAAAGGTCAGCATCTCC	out-of-frame	EAGGSLLLCAALLAAGCALGLRLGRGQGAADRGALIWLCYDALVHFAL|lsdllkkhesrpgtvahacnpstlggrcrrit*	.
TALL051	MINA	CTD-2201I18.1(27695),SERINC5(302)	-/-	./-	3:97947380	5:80111349	CDS	intergenic	translocation	upstream	downstream	0	0	2	23	34	low	.	.	duplicates(1)	GCAAGTTTGAATCTGCCTGTTTCCTTTTTTGAAGGTCGGCTTTCTCTCTTTGGGGTTTTCTAGGTGGAAAGTTACCGAGGCTGGACAGTGTAGTGAGACTGCAGTTTAAAGACCACATTGTCCTCACAGTACT...|...AGGCTCCCCCTCCCCTCTCTAAACCAAAGTATAAAACAAAATCTAGCCCCTTCTTCAGGGCCGAGAGAATTTTGAGCACTAGCCGTCTCTCGGTCGCTGGCTAATAAAGGACTCCTCAATTCGT	.	.	.
TALL051	TSPAN32	CD81-AS1	+/+	-/+	11:2317525	11:2336131	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	1	0	18	9	low	.	.	duplicates(2),mismappers(1)	GCCCAGCCTCTTGAGATGCTCCCAGGGTGGACCCACACATTGTCTCCACTCCGAAGCAGTTGCTATTGGTCCAAGAGGATGCTCGGGTAGTCTTCGGTGGCTGCAGGAGAGCGATGCTGCGCCTCTGCCCCTCTCCTGCCACCTGGCTGCCCACAGAG|GTGTGCTCTCACCATTGTTCCATCTGCGACTGAGCACCATTTCTGCAAAAAGTAAAGATGGCCTTGCTGAGAGATCTTTTGTCTCTGTGCTGACTTTTCTTCACGGCACTGATTATCTTTTTCTAACAATTTTGG	out-of-frame	PSLLRCSQGGPTHCLHSEAVAIGPRGCSGSLRWLQESDAAPLPLSCHLAAHR|gvlsplfhlrlstisakskdglaersfvsvltflhgtdylfltil	.
TALL051	TCEANC2	C1QTNF6	+/+	-/-	1:54099061	22:37192752	3'UTR	intron	translocation	downstream	downstream	0	0	2	78	3	low	.	.	.	GGAAGGTGATTGGTATGGCTGGAGTAGAGGACACTGGCAGGAGAGTAGCTGGAGATGAGGCAGGAGAGGAAGGCAAGGACCAGGATCAGGTTTGAAGGGTCTTGAGCATCAGGTGAAGGCGTTAGACTGATTT...|...AGAGCTCTGATTAATTGGCTTAAAAATAATAAGTACTTAAATCAAATATTTTGTCAGAAAAATAGAAACATTAATGCCTTTTGGTTCACATGACTTTAATAATCTTTGGGAAATAGAGACAGTTTTAAAGATTA	.	.	.
TALL051	C15orf40	HOMER2	-/-	-/-	15:83011497	15:82924770	CDS	intron	deletion/read-through	upstream	downstream	0	0	2	38	1	low	.	.	duplicates(1)	CGGCTCCGCAGCGGGCTGAGGCACCTTCGGGCAACACCCAATACTCGGGGCTCCGCTCGGCTTCTTTGCGCCGAGATGCCTAAGAAGGCTGGTGCGACGACCAAG...|...GTTGGGAAAATTGGGTGAGATGTATGTCAGTGCCCAGCATGATGCCCAGCCCACAACAGGTGATCAATAAGCACTAGAACCTCCAGGAAGTACCTTTTCCAAGGTTCTGCTGAGATTGCGGGGAGCGGATCTT	.	.	.
TALL051	DNAJB6	PTPRN2	+/+	-/+	7:157415735	7:157720502	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	42	0	low	.	.	mismappers(1),mismatches(1)	CCGTGTCCAGGGTGGGCTTCTAGCTCTGCCGCTGGGCGGAACTGGGGTAGGTCCCAGGGTGGGGTTCCAGGACTGAGGTGCAGCCGTGCCCAGGGTGGGCTTCTAGCTCTGCCGCTGGGCAGAACTGGGG...|...GATCCAGCGGCC	.	.	.
TALL051	CTPS1	FOXO6	+/+	+/+	1:41011689	1:41381616	3'UTR	splice-site	deletion/read-through	downstream	upstream	2	0	0	94	3	low	.	.	duplicates(2)	CGTAGACATGCCAGAACACAACCCAGGGCAGATGGGCGGAACCATGAGGCTGGGCAAGAGGAGAACCCTGTTCCAGACCAAGAACTCAGTCATGA___GGAAACTCTATGGAGACGCAGACTACTTGGAAGAGAGG...GACACCTATAGTGACAGGAGTGGAAGCAGCTCCCCTGACTCTGAAATCACCGAACTGAAGTTTCCATCAATAAATCATGACTGATCTTGTAGC___GGATGATTCTTCAAGAGACCCTTCAAACTTGG|AACTCCATCCGGCACAACCTGTCGCTGCACACCCGTTT	out-of-frame	DTYSDRSGSSSPDSEITELKFPSINHD*scsg*ffkrpfklg|tpsgttcrctpv	.
TALL051	LYSMD4	RP5-1033E15.3(3588),LDOC1L(2070)	-/-	./+	15:99728305	22:44490502	3'UTR	intergenic	translocation	upstream	upstream	0	0	2	25	11	low	.	.	duplicates(1)	GCACACACAGGCTGCGCCCAGTTCCGCAGGAGCCGTCCCACAGCGTGGCTCTCTGGATTCTCCCACTTGTCCTCCTTGGAAGGAGCTCTTGCTGGCCAGTGTTTGGAGGGGAGGATGAGTGCCTGTCACTG...|...AGCCAGAGAGTAGAGGCCCAGCTCCAACCCATAATCTGTTCTCTTGCCTCGAAGGGGCCAGACAGTGGGATGGGGAGGGGGCTCAGCCCTAGATCTCCCTGTCAGGCAGAGTCCTTGCAAGGCCAGTCTTTGTA	.	.	.
TALL051	NTRK1	PEAR1	+/+	+/+	1:156842193	1:156906276	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	6	5	low	.	.	.	CCGATCTTGACGGTGAAGTCCTGGGACACCATGCAGTTGCGGGCTGCTAGATCTCGGTGCACAAACTTGTTGGCAGCAAG|CGCTCTGTGCCCAGGAGTGTGTCCATGGCCGTTGTGTGGCACCCAATCAGTGCCAATGTG...ATCCCAAGAGTGGGGTATGTTCTTGCCCTTCTGGTCTGCAGCCCCCGAACTGCCTTCAGCCCTGTACCCCTGGCTACTATGGCCCTGCCTGCCAGTTCCGCTGCCAGTGCCATGGGGCACCCTGCGATCCCC	out-of-frame	PILTVKSWDTMQLRAARSRCTNLLAAs|alcpgvcpwplcgtqsvpm	.
TALL051	TBC1D7	PHACTR1	-/-	+/-	6:13320908	6:13255163	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	0	1	119	3	low	.	.	duplicates(1)	AAATTCTCCTAAAAGATGACCGTCTGG___GAATCTTGCCTCCACACCACGAGTCCCATGCCAAGGTGATGATGTATCGTAAGGAGCAGTACTTGGATGTCCTTCATGCCCTGAAAGTCGTTCGCTTTGTTAGTGATGCCACACCTCAGGCTGAAGTCTATCTCCGCATGTATCAGCTGGAGTCTGGGAAGTTACCTCGAAGTCCCTCTTTTCCACTG|CATGTATGACACATTGCAGCCACTTTGTTTCC	out-of-frame	ILLKDDRLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLPRSPSFPL|hv*	.
TALL051	LFNG	CTC-277H1.7	+/.	+/.	7:2528724	16:67262747	intron	exon	translocation	downstream	upstream	2	0	0	10	20	low	.	.	.	.	.	.	.
TALL051	UVSSA	MAEA	+/+	+/+	4:1355245	4:1327627	splice-site	splice-site	duplication	downstream	upstream	0	1	0	63	201	low	.	.	.	CTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|AGCTGCCTGGAGTTCAGCCTCAGAATCCAGGAGTTCATTGAACTCATCCGGCAGAATAAGAGACTGGACGCTGTGAG___ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGGACGAGGTGCGCCAGGCCATGGGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCC	in-frame	LRKYKELDIEPEGGERhR|SCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHIS	.
TALL051	UVSSA	MAEA	+/+	+/+	4:1355245	4:1332757	splice-site	splice-site	duplication	downstream	upstream	1	0	0	63	326	low	.	.	duplicates(2)	CGGGCGGCGGGGCACAGCCATCCCAGACAGCCACAGGTGACCCCTCAGATGAGGACGAGGACAGCGACCTCGAGGAGTTTGTGCGGAGCCACGGGCTGGGCTCGCACAAGTACACGCTGGATGTGGAGCTCTG...AAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCA	out-of-frame	KRAIDLKAELELVLRKYKELDIEPEGGERhR|tckkalqpsrre	.
TALL051	UVSSA	MAEA	+/+	+/+	4:1355245	4:1339074	splice-site	splice-site	duplication	downstream	upstream	1	0	0	63	282	low	.	.	.	TTTTGACTTTGACCCGAACCCGGAGACGGAATCCCTTGGCATGGCTTCTGGCATGTCCGATGCCCTTCGCTCCTCCTGCGCGGGCCAGGTGGGCCCCTGCCGGTCTGGCACCCCTGACCCCCGGGACGGGG...GTGCCATTGACCTGAAGGCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAG	in-frame	AIDLKAELELVLRKYKELDIEPEGGERhR|SLLSIRQDDKVVCP	.
TALL052	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	22	37	6	175	130	high	.	.	duplicates(28),low_entropy(6),mismappers(2),mismatches(4)	ACTGACTTCAAGAATGAAGCCGCGGACCCTCCTG___GCGGAATTCTCCACGAGTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG___...CCGAGCCCGCGCTCAGACGCCCCAGCTCCGCC...___...CGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCA...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGAC...GTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTG	.	.	.
TALL052	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	14	20	10	176	176	high	.	.	duplicates(20),low_entropy(6),mismappers(3),mismatches(1)	GCGTGAGCGGCTGCGGGGCCCCCAGGCGCCCCGGCCCCTCCCCGGGCTCCACGCCGCGGGCAGGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCA	.	.	.
TALL052	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	11	16	4	93	176	high	.	.	duplicates(13),mismatches(1)	CGGCCGGCGTGTGCGTTGCCGCAACCCCGCGTGGGTTCCACAAAAGGCGGCCCCGAGTCTCCGGGTCACGGTTTGGGGATTCTCCTCCCGGGTCCTGGCGGAGGGCGAACTCCCGGCTCCCGCAGCT___...CGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGG...___...GTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC...___...GGG...___...GGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCC...AGGGGGACCAGCCATCCCCTCGCACCTGCgCAGCACCCCCTACCCCTTCGGCCTCgCCCCCAGCTCAGTTtTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCC	.	.	.
TALL052	ZNF704	TMC1(6130),LINC01474(29247)	-/-	./+	8:80873544	9:72842481	splice-site	intergenic	translocation	upstream	upstream	7	6	1	60	28	high	.	.	duplicates(3)	GAGGAGAAGCCCCGAGGGGGCGCGGAGGAGGAGGATGACGACGAGGAAGAGGAGGACGAGGAGGTGGTCGTCGAGGTGGTGGACGGCGACGAAGACGACGAGGACGGCGAGGAGCGTTTCGTGCCCCTCGGACCCGGCCACGCAGTCCCCAGGGGCCCGGCCCGGGGCGCGTTGAAG|ATGGCTGCTACAGCACCAACAGTCACATTCACATTC___CAGGAAAGCCAAGAAAATCCACACACTCTTTGGAGGAAGCAGCTTCCCTCTGCAGGCT___TTCTCAGACGGGGCGGTTGCCAGGCAGAGGGTCTCCTCACTTCTCAGACGGGGCATCCGGGCAGAGACGCTCCTCACATCCCGGACGGGGCGGCAGGGCAGAGGTGCTCCCCACATCTCAGACGATGGGCGGCCGGGCAGAGACACTCCTCACTTCCCAGATGTGATGGCGGCCGGGAAGAGGtGCTCCTCACTTCC	.	.	.
TALL052	MLLT10	PICALM	+/+	-/-	10:21572026	11:85976682	splice-site	splice-site	translocation	downstream	downstream	2	5	4	9	167	high	.	.	duplicates(9)	TGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCGGTGCATCAAG___CTTGCTATGGCATTGTTCAAGTACCCACTGGACCGTGGTTTTGCAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG___TTATTGCTTACTGTGAGCTAAGACAGTTTTGCCTAACCTCGAAGTCATGAAG|GCACCCCCTGTAATGGCCTATCCTGCTACTACACCAACAGGCATGATAGGATATGGAATT___CCTCCACAAATGGGAAGTGTTCCTGTAATGACGCAACCAACCTTAATATACAGCCAGCCTGTCATGAGACCTCCAAACCCCTTTGGCCCTGTATCAGGAGCACA...GGAATTACTCCAAAAAGACAAGTGCTCAAGCAGCAAAATCCTTACTaCCAGCAAAATCCAAACTGCTGTCTCTTAAATCTCTTAAACTCTCTTCTTCCATTAGAATGCTACAAGTAACTCAGTGAAGGCCCA	out-of-frame	CCVCSDERGWAENPLVYCDGHGCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVllltvs*dsfa*prshe|gtpcnglscyytnrhdriwnsstngkcscndatnlniqpachetskplwpcirs	.
TALL052	MLLT10	PICALM	+/+	-/-	10:21538912	11:85974812	splice-site	splice-site	translocation	downstream	downstream	5	1	3	129	203	high	.	.	duplicates(3)	CCTGACTCCTGTGCGGAACGTGAGTGACTGAGCGGCAAAGCCCGA___ATGGTCTCTAGCGACCGGCCCGTGTCACTGGAGGACGAGGTCTCCCATAGTATGAAGGAGATGATTGGAGGCTGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCGGTGCATCAAG___CTTGCTATGGCATTGTTCAAGTACCCACTGGACCGTGGTTTTGCAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG|CCTCCACAAATGGGAAGTGTTCCTGTAATGACGCAACCAACCTTAATATACAGCCAGCCTGTCATGAGACCTCCAAACCCCTTTGGCCCTGTATCAGGAGCACAG___ATACAGTTTATGTAACTTGATGGAAGAAAATGGAATTACTCCAAAAAGACAAGTGCTCAAGCAGCAAAATCCTTACTTCCAGCAA...GCTGTCTCTTAAATCTCTTAAACTCTCTTCTTCCATTAGAATGCTACAAGTAACTCAGTGAAGGCCCATGAAGGAAATTGGGACTAGTTTATAGGAGAACGTATCAATACAGTTTATAAAGCCAAGAATTGCT	in-frame	MVSSDRPVSLEDEVSHSMKEMIGGCCVCSDERGWAENPLVYCDGHGCSVAVHQACYGIVQVPTGPWFCRKCESQERAARV|PPQMGSVPVMTQPTLIYSQPVMRPPNPFGPVSGAQIQFM*	.
TALL052	PICALM	MLLT10	-/-	+/+	11:85981129	10:21586294	splice-site	splice-site	translocation	upstream	upstream	3	3	2	152	56	high	.	.	duplicates(4),mismappers(1)	CTTCTCAAACCAACAGTGGCCTCTCAGAACCAGAACCTTCCTGTTGCCAAACTCCCACCTAGCAAGTTAGTATCTGATGACTTGGATTCATCTTTAGCCAACCTTGTGGGCA___ATCTTGGCATCGGAAATGGAACCACTAAGAA___TGATGTAAATTGGAGTCAACCAGGTGAAAAGAAGTTAACTGGGGGATCTAACTGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCgGCAACAATG|AGATGTGAACTTTGTCCCCATAAGGATGGAGCTTTAAAAAGAACAGATAATGGGGGT...___CTTCGCTCATTTGCCCAGGCTGGAGTGCAGTGGTGCAGTCTCAGCTCACTGCAACCTCCACCTTCCGGGCTCAAGCGATTCTCCTGCCTCAGCC...GGGCCCATGTGGTTTGTGCCCTGTATATTCCAGAGGTACAATTTGCCAATGTTTCCACAATGGAACCAATTGTTTTACAGTCTGTTCCGCATGATCGTTATAATAAG___ACTTGCTACATTTGTGATGAACAAGGAAGAGAAAGCAAAGCAGCCACTGGTGC...CACTCTCAGGATAAACATCATGAGAAAGAGAAAAAA___AAATATAAAGAGAAGGACAAACACAAACAGAAACACAAGAAGCAGCCAGAACCATCACCTGCATTGGTTCCATCCTTGACTGTTAC	in-frame	LLKPTVASQNQNLPVAKLPPSKLVSDDLDSSLANLVGNLGIGNGTTKNDVNWSQPGEKKLTGGSNWQPKVAPTTAWNAATM|RCELCPHKDGALKRTDNG	.
TALL052	MLLT10	PICALM	+/+	-/-	10:21538912	11:85976682	splice-site	splice-site	translocation	downstream	downstream	3	1	3	129	167	high	.	.	duplicates(6)	GGCTCCTGACTCCTGTGCGGAACGTGAGTGACTGAGCGGCAAAGCCCGA___ATGGTCTCTAGCGACCGGCCCGTGTCACTGGAGGACGAGGTCTCCCATAGTATGAAGGAGATGATTGGAGGCTGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCGGTGCATCAAG___CTTGCTATGGCATTGTTCAAGTACCCACTGGACCGTGGTTTTGCAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG|GCACCCCCTGTAATGGCCTATCCTGCTACTACACCAACAGGCATGATAGGATATGGAATT___CCTCCACAAATGGGAAGTGTTCCTGTAATGACGCAACCAACCTTAATATACAGCCAGCCTGTCATGAG	in-frame	MVSSDRPVSLEDEVSHSMKEMIGGCCVCSDERGWAENPLVYCDGHGCSVAVHQACYGIVQVPTGPWFCRKCESQERAARV|APPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVM	.
TALL052	MLLT10	PICALM	+/+	-/-	10:21551921	11:85976682	splice-site	splice-site	translocation	downstream	downstream	1	0	3	11	167	high	.	.	duplicates(2)	GATTGGAGGCTGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCGGTGCATCAAG___CTTGCTATGGCATTGTTCAAGTACCCACTGGACCG...GCAGTGGTGTGATCTCAGCCCACTGCAACCTCTGCTCCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAA|GCACCCCCTGTAATGGCCTATCCTGCTACTACACCAACAGGCATGATAGGATATGG	out-of-frame	QWCDLSPLQPLLPGFKRFSCLSLP|stpcnglscyytnrhdri	.
TALL052	FRDAP(110396),RNA5SP388(7129)	NRXN3	./.	+/.	14:78170674	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	6	9	0	29	36	medium	.	.	duplicates(8)	.	.	.	.
TALL052	MICAL1	MICAL1	-/.	-/.	6:109451384	6:109452967	intron	intron	duplication	upstream	downstream	0	2	1	16	23	medium	.	.	.	.	.	.	.
TALL052	DENND1B	JADE1	-/-	+/+	1:197775139	4:128816367	splice-site	splice-site	translocation	upstream	upstream	0	2	0	119	10	medium	.	.	.	GGGGACGGCGCGACCCTCGCGCGGCCGGGCTGCGGGCTTCCAGGCCAGCGCGCGGGGGCCGGACGGACAGCCCCACACCGACATGTAACCATGGACTGCAGGACCAA|TTCATAGCCCTGATGAAGCAAGTTACTCTGCTCTCCTAATAAATGCAAGAAAATGACCTTGGAGGGCCTTTTTAATTACACATAGAAGTGACAATTT___GCTGCCTGCTGTTTCCCGGGGAGATCATGAAACGAG	out-of-frame	MDCRTn|s*	.
TALL052	CDK6	AC002454.1	-/-	+/+	7:92671426	7:92854909	splice-site	splice-site	inversion	upstream	upstream	1	0	1	267	2898	medium	.	.	duplicates(1)	GAACATTCTGGTGACCAGCAGCGGACAAATAAAACTCGCTGACTTCGGCCTTGCCCGCATCTATAGTTTCCAGATGGCTCTAACCTCAGTG___GTCGTCACGCTGTGGTACAGAGCACCCGAAGTCTTGCTCCAGTCCAGCTACGCCACCCCCGTGGATCTCTGGAGTGTTGGCTGCATATTTGCAGAAATGTTTCGTAGAAA|TCCACCCCTGGCTGGTTTCTGCT...GCTGATCTCACAGAGGTGAGGTGATAACAGTGATtAAACAAAATCTTCAAACCACAGCACA___CACTGCAAGCTATTTGGCATATGAAGGTCaTGACCTGAGAAAACCATCTTGGATAACTGCAGCAAGGAAAAG	out-of-frame	NILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRn|pplagfc	.
TALL052	CPA4	CPA5	+/+	+/+	7:130312122	7:130346393	splice-site	splice-site	deletion/read-through	downstream	upstream	2	5	0	261	13	low	.	.	duplicates(2),low_entropy(1)	AAGACGGTGGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GCTGGGCTTTCCAGCCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGC	out-of-frame	ktvvpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|cwafqplgavls*	.
TALL052	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	261	12	low	.	.	duplicates(1),low_entropy(1)	CTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCACACCCTGGAGGAG___ATATATAGCTGGATTGACAACTTTGTAATGGAGCATTCCGATATTGTCTCAAAAATTCAG...GGAATTCACTCCCGGGAGTGGATCACCCATGCCACCGGCATCTGGACTGCCAATAAG___ATTGTCAGTGATTATGGCAAAGACCGTGTCCTGACAGACATACTGAATGCCATGGACATCTTCATAGAGCTCGTC	out-of-frame	llds*wDKVARLAAKALASVSGTEYQVGPTCTTV|caag*	.
TALL052	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	2	248	652	low	.	.	duplicates(3),low_entropy(1),mismatches(1)	CGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL052	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	5	0	74	32	low	.	.	duplicates(5),low_entropy(1),mismatches(1)	CAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGG...CCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCCTCATTCCCAATGCCATCCAAGTTTGCACTGATTCAGAAAAG___CACTTCTTCACTTCGTTTG	.	.	.
TALL052	RNA5SP388(22082),RP11-332E19.1(31278)	NRXN3	./.	+/.	14:78200003	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	1	2	2	6	36	low	.	.	duplicates(3),low_entropy(1),mismatches(1)	.	.	.	.
TALL052	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	2	2	1	10	130	low	.	.	duplicates(7)	GGAAAATACATGTACAGCCAACTTCCTTGAGGGTTCGTTCTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTT...GTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACgTGAAG___AAAGCgTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCgTTCTGTTCAGTGTCTGAG	.	.	.
TALL052	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	2	3	0	72	45	low	.	.	duplicates(3)	CCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCGAGGATTTAGCTAGCTGGTGACGCCGGAGCACGAAGTTGTACAGGTAGCCAGCAGCACCCACGCGAGCCCGCGGTTACCCTGGCCGCGCGGCTACTGTAGAGTGGGCTGGCGGCG	out-of-frame	WIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
TALL052	Y_RNA(4459),RP11-973H7.1(9374)	CEP76	./-	-/-	18:12765277	18:12701113	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	131	142	low	.	.	duplicates(6),mismatches(1)	TGGATGTCCAAGATGAAGGCACTGCTAAACTCcGCATCTGGAGAGGGTGGTTTCCTGATTCgCaGACAAcGTCTCCTCCCTGTGTCCTCACATGGCCTCTACTCTGTGCGCACCTGGAGAGAGAGCGCCC?GTCCCTCCCTCTTCTGATGAGGTCACCAGCCCTATCAG|ATGGATGTCCATGGTAGAATAAGAGAAATCCTTGCTGAGACTATACGGGAAGAATTGGCACCTGATCAACAGCATTTATCAACAGAAGATTTGATCAAAGCCCTTAGACGcCG...ATCATTGACGATGTGATGAAAGAACTTAATTTTGTTACT___GACAGTGTTGAGCAAGAACTCCCTTCCTCTCCAAAACAACCTATTTGTTTTGATAGACAATCGACAaTAAAAAAAA___GTTTTGGGTGGAAAAGCTTTCTTGGAACATCTGCAAGAACCTGAGCCTTTACCTGGACAAGTTTGTTCAACGTTTACTTTATGTTTACATTATCGAAACCAACGTTTTCGTTCTAAACCTGTTCCATGTGCC	.	.	.
TALL052	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	4	0	18	4	low	.	.	.	CAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GAAAACAAA...AGATGTGAAGATGGCCAGCAG___GCTGCACATGTTCTTCGGAAAAAGATCTAAAAGCATCACCTTTTGCTTTGTCTGCTGGTGCTTAAG___G	out-of-frame	QHLPHHQNPAACQHRCr|lhwri*	.
TALL052	EEF1A1P6	FAM126A	-/.	-/.	7:22511729	7:22922282	exon	intron	deletion	downstream	upstream	0	0	4	376	0	low	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(1)	.	.	.	.
TALL052	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	26	16	low	.	.	duplicates(1),mismatches(1)	AGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___...ACCGATTGCCACACCCAGGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGACATGACCCGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGT	out-of-frame	RLPHPGWRPEMVGLLSLWDMTRMLNMLIVFRFLRIIPSMK|*	.
TALL052	RP11-60L3.1	CCDC33	+/+	+/+	15:74209534	15:74243985	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	28	10	low	.	.	duplicates(3)	CTGAGTTTCCCCAGATGTGGCCTTAGAGAAGCTG...GGGCCCTGACCACAGCTAAGGGGAGTCATCACAGGGCTTCAGGGCTGGAATTCCAG|AACACTGAAGACCCAGAGGAGCCCCTGATCGCCTCCCAGAGCACGGAACCTGAGATCGGTCACCTGTCTCCCTCTAAGAAGGAGACCATCATGGTCACCCTCCATGGGGCTACCAACCTGCCTGCCTGCAAGGATGGCTCCGAGCCGTGGCCCTATGTGGTGGT___GAAAAGCACATCTGAGGAAAAGAACAATCAGAGCTCCAAGGCAGTCACATCTGTGACCTCAGAGCCCACCAGAGCCCC	.	.	.
TALL052	RP11-60L3.1	CCDC33	+/+	+/+	15:74218861	15:74243985	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	9	10	low	.	.	duplicates(1)	CCTGGCTCTGCTCCGGGCTAGCACGGACCCCAC...GGGAGCCTGGCCTACAGTGTGGCCTTCCACGTCCACCGGGGCCCTCAGCCTCCAGTCTCAGACAGCCCTCCCAGGGCTGGCCAGCCAGAACTGATGTCACCATGCCCAGAGCCCCAGCTCCCCATACTGCAG|AACACTGAAGACCCAGAGGAGCCCCTGATCGCCTCCCAGAGCACGGAACCTGAGATCGGTCACCTGTCTCCCTCTAAGAAGGAGACCATCATGGTCACCCTCCATGGGGCTACCAACCTGCCTGCCTGCAAGGATGGCTCCGAGCCGTGGCCCTATGTG	.	.	.
TALL052	RP11-60L3.1	CCDC33	+/+	+/+	15:74212277	15:74243985	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	8	10	low	.	.	.	GGGGTTTGTGCCTTCAGAGCCTGGTGGAGCAGCCAAGCAACTGGGCACATGAAGACAAAG|AACACTGAAGACCCAGAGGAGCCCCTGATCGCCTCCCAGAGCACGGAA	.	.	.
TALL052	C5orf56	RAD50	+/+	+/+	5:132449689	5:132556332	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	0	0	308	11	low	.	.	.	CGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ATATCTATTGCTGGGAGCACTGATCGGAATGGATTACCTCTACATTCTTCATATTTGCAGACTGCTTTTAGTTTTAGTTCCC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|diycweh*	.
TALL052	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	27	120	low	.	.	duplicates(2),mismappers(1)	GTTTGGCCCGGTCCCTGCCTTCCATAGATAAGCTGATGGACAGGATGCTGCCAGAAGCGTCTCCAAGGCCTTCAAAATGCCAAGGCGACTCCAGCATTTCTTCTCTCCTGCCACCTGCCCACGCACCAGCCGG...CCACTCACCTCAAGAGGTGGCTCCCGAGCCTCCTGGGAGGGAAGGGGCCATGGCAGTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCAGCCTGCTCTTCCTGGTGGCCCATCTCGCCCTCCAGATCTGCCTGCATAcTGTGCCCC	.	.	.
TALL052	EEF1A1P6	RAPGEF5	-/-	-/-	7:22511731	7:22356696	exon	intron	deletion/read-through	upstream	downstream	0	0	3	679	7	low	.	.	mismappers(1),mismatches(7)	GCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCgGGCAAGTCCACCACTACTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCAT...|...CTGAAGAGGGG	.	.	.
TALL052	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	1	2	0	13	11	low	.	.	duplicates(1)	G___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCAT	.	.	.
TALL052	GEN1	RYK(1330),AC096967.1(9702)	+/+	./+	2:17782050	3:134252074	3'UTR	intergenic	translocation	downstream	upstream	0	0	2	49	6	low	.	.	duplicates(2)	CTAAGATTCCAAAGCACTTGAAATTTAAAACACTTAGGTATAACTTAACTATTTTAGTACTATCAGCAATAGCAGAGACAGAGGGAAGGTATCTAGTTCATGTGTGGTAAAAATTTTAATGTTCTCTGTGTC...|...GTCCTGGGACACCTCGTCCCTGCGGACAGGCCCCCGTCCTGACCCCAAGGCTCTCGCGGGGCCGTGCCTCGGGGAGCAGCTGCTCTGACAGCTAGGCCTGGCTTCGGGGCACAGTTGCTCCATCGCAGTGAGGC	.	.	.
TALL052	AC009237.8	RALGPS1	+/.	+/.	2:95526585	9:127216491	exon	intron	translocation	upstream	downstream	0	0	2	36	4	low	.	.	duplicates(1)	.	.	.	.
TALL052	ERCC6L	RGAG4	-/-	-/-	X:72238844	X:72127710	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	36	13	low	.	.	duplicates(1)	CGAAATTCAAGCTCCAAACTCTAAGCTCCAAGCTCCAAGCTCCAAGCTCCAAaCTCCAAACTCCCGCCGGGGTAACTGGAACCCAATCCGAGGGTCATGGAGGCATCCCGAAGGTTTCCGGAAGCCGAGGCCTTGAGCCCAGAGCAGGCTGCTCATTACCTAAG|CTGATTTTATCTGATTTCCTCAAGAGTGCATTCCAGAAGGGGACCTGCTATTCTTCGAGGGGACCTGCTATTCTTCGAGGCAGTGGACCCTGTTTGCTGATGGTCAACACTCTGGCCCTG...AGGACGGGTGCCTTAAACCCACACTTCCAGGGACCCTTCAGCACAGGTCCTGCCTGTTCCCATGGTGCTTCTCACCCTGAACCCTCAGAGCTACAGCCAGGGATAGAGCAGATGAGCAGTGAGCTGGTTTCCA	out-of-frame	MEASRRFPEAEALSPEQAAHYLs|*	.
TALL052	NOD2	ACKR3	+/+	+/-	16:50732692	2:236575564	3'UTR	intron	translocation/5'-5'	downstream	downstream	0	0	2	15	10	low	.	.	.	CTGGGATCACATGTGGACTTTTATTTCCAGTGAAATCAGTTACTCTTCAGTTAAGCCTTTGGAAACAGCTCGACTTTAAAAAGCTCCAAATGCAGCTTTAAAAAATTAATCTGGGCCAGAATTTCAAACGGCC...|...ACACACACACACACAGCACAACCCCAGACACACGCACACACAGCACAACCCCAGACACACACACACACAGCACAACCCCAGACACACGCACACACAGCACAACCCCAGACACACGCACACACAGCACAACCCCAGACACACACACACACACAGCACAACCCCAGACACACGC	.	.	.
TALL052	EML5	ZAP70(173),TMEM131(16298)	-/-	./+	14:88615087	2:97740035	3'UTR	intergenic	translocation	upstream	upstream	0	0	2	7	511	low	.	.	.	GTAGTTTTGAATTCAGGAACAGATCCAAAGTTAGCAGTATATGGCTGCTACATTTCCATTTTCATTTTCGAGCCATCAGTTTATGTTCAGATGCCATCTCTGTAATtGCACATTTAAAACATAACTGTAGCC...|...GGGGTGGAGTGGGGAACCTGAGGCCAGGCGGGTGTGGGCCCAAGGGCTGCGTGCCTGGCTGAGCCCAGCTCCCCTGTGTGGAGATGAGTGTGCCCCATGCCAGGTGCACGTTAGGATCACCTGGAGCTATTTTA	.	.	.
TALL052	RP11-209A2.1(20602),PRSS16(15186)	PRSS16	./+	+/+	6:27232515	6:27254693	intergenic	splice-site	deletion/read-through	downstream	upstream	1	0	1	14	2	low	.	.	.	CAACATTCTGGTGCCCAACGTGGGGCTCGAAAGAATCTGATGAAGGAATGCTCGAGCGTGTGAAACGGAGGGCTGATGGACGAAGGACTCCCGAGGACGAAAAAGTTTTTAAGCTCTGCAG___AATCAGATTCAGCCTTGAAGCCAACATTGAACAGTAGATACGTGAAGTGTG|ATGTCACCTGTGAG	.	.	.
TALL052	DNAAF2	AFTPH	-/-	+/+	14:49634661	2:64591339	CDS	intron	translocation	upstream	upstream	0	0	2	26	11	low	.	.	.	CCCTGCCCTACAGCCTGGCGCCCGGCCGCGAGTACGCGGGGCGCAGCAGCAGCCGCTACATGGTCTACGACGTGGTCTTCCATCCAGACGCGCTTGCtCTGGCCCGGCGGCACGAGGGCTTCCGCCAGATG...|...GTCTGTATCCCAACAGGCTGAGACTGGGTCTTCTGAGCTGAGAGCTTTCTCTCCTGGAATTCCCCACTGGGGATAAAGAGAGCCTGAGGTTAAAATGACTTAGTCTTTCCCTGGGCACACTTTGTTTCAGGC	.	.	.
TALL052	DNAAF2	AC008074.1	-/-	-/+	14:49634661	2:64591339	CDS	intron	translocation/5'-5'	upstream	upstream	0	0	2	26	11	low	.	.	.	CCCTGCCCTACAGCCTGGCGCCCGGCCGCGAGTACGCGGGGCGCAGCAGCAGCCGCTACATGGTCTACGACGTGGTCTTCCATCCAGACGCGCTTGCtCTGGCCCGGCGGCACGAGGGCTTCCGCCAGATG...|...GTCTGTATCCCAACAGGCTGAGACTGGGTCTTCTGAGCTGAGAGCTTTCTCTCCTGGAATTCCCCACTGGGGATAAAGAGAGCCTGAGGTTAAAATGACTTAGTCTTTCCCTGGGCACACTTTGTTTCAGGC	.	.	.
TALL052	TFAP2C	AL133232.1(1943),RP5-897D18.1(9485)	+/+	./+	20:56638738	20:56720912	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	2	0	25	2	low	.	.	.	CTTTGAAATGACATGTTCCTTTAAG|TGCTGGATGCTTCCTGCCCTTGGACATCGGACTCCAGGTTCTTCAGTTTTGGAACTCAGACTGGCTTTCCTTGCTCCGCAGCCTGCAGATGGCCTATTGTGGGACCTTGTGATTGC___GATCCTCTTCTTACACATTGACTTCATCAGCAGGCTTCTGGTGAAAGACAGTGATGGCAAGTGACTGAAATCCAAGATGATGATCCATTGGCTTCCCCCAAATCAAGGAGGGGCCAACTAACCAAGCC	.	.	.
TALL052	AKAP7	AKAP7(34587),RPL21P67(150937)	+/+	./+	6:131283311	6:131318122	3'UTR	intergenic	deletion/read-through	downstream	upstream	1	0	1	153	4	low	.	.	duplicates(3),mismatches(1)	CAAAAGAAGCGTTGTCCAG___GAATACATGTTTGGGATTTTTATTTTTTACGTGTCCGAAGATAAGCTCCAGGTCTTATCGTATCCCTTGCCATCTGAACTTGTTTGCACTGCTTCTGTTTGAAAGAGCATCTTGAAAAACTTCCCCG|AGGTGCTCTTTCCTGCTACATTTGGATACAAGTCTCTGGTGGGCCCTGTTTGCCCAGATCCTTGGGCAA	.	.	.
TALL052	FKBP15	ZMYM4	-/-	+/+	9:113176537	1:35386074	splice-site	splice-site	translocation	upstream	upstream	2	0	0	117	40	low	.	.	.	GCTCTCAG___AGCTCCAAGAAACCTCTGAGCAAGCACAGTCCAAATTCAAAAGTGAAAAGCAGAACCGGAAACAACTGGAACTCAAGGTGACATCCCTGGAGGAGGAACTGACTGACCTTCGAGTTGAGAAGGAGTCCTTGGAAAAG|GTGTACAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATTCCTCAGTATCACCTAGCCATGTCAGATGGAAGTATA	out-of-frame	LSELQETSEQAQSKFKSEKQNRKQLELKVTSLEEELTDLRVEKESLEK|vykfsvtvvkpqqflsit*	.
TALL052	NSUN6	RP11-236B18.2	-/-	+/+	10:18596208	10:91006145	splice-site	splice-site	inversion	upstream	upstream	2	0	0	122	48	low	.	.	duplicates(1)	CTTTCAAAT___AGGCATGGGCATAAGAATGACAGAACCAGTATATCTCAGCCCTTCATTTGACAGTGTACTGCCCCGTTACTTATTTTTACAA___AATTTGCCATCTGCCTTAGTAAGTCATGTACTAAATCCTCAAC...AGAGAAGATTCTAGACTTGTGTGCAGCACCTGGAGGGAAAACAACACACATTGCAGCACTAATGCATGATCAG|GCTTCAATGTGGATATGATGGCTGGAGCTCCAGCAGCCATCCTGTGACCCTGAGAACAAG	out-of-frame	EKILDLCAAPGGKTTHIAALMHDQ|asmwi*	.
TALL052	HDAC4	NDUFA10	-/-	-/-	2:239156652	2:239961186	splice-site	splice-site	duplication	upstream	downstream	1	0	1	58	200	low	.	.	duplicates(1)	AAGGCGCTGGCCCACCGGAATCTGAACCACTGCATTTCCAGCGACCCTCGCTACTGGTACGG___GAAAACGCAGCACAGTTCCCTTGACCAGAGTTCTCCACCCCAGAGCGGAGTGTCGACCTCCTATAACCACCCGGTCCTGGGAATGTACGACGCCAAAGATGACTTCCCTCTTAGGAAAACAG|CTGCCGGGCCGCAAGTACAGCCCTGGGTACAACACCGAGGTGGGAGACAAGTGGATCTGGCTGAAGTGAAC	out-of-frame	KALAHRNLNHCISSDPRYWYGKTQHSSLDQSSPPQSGVSTSYNHPVLGMYDAKDDFPLRKT|aagpqvqpwvqhrggrqvdlaev	.
TALL052	KDM4C	UHRF2	+/+	+/+	9:6849700	9:6420912	splice-site	splice-site	duplication	downstream	upstream	0	1	1	83	297	low	.	.	duplicates(1)	AGACCACGTTTGCATGGCACACCGAAGACATGGACCTCTATAGCATTAATTATCTCCACTTTGGAGAGCCCAAGTCTTG|TTGGAAAATGGATATACCTTATTTGATTATGATGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGCCCAGACCCTGATCATCTTCCTGGCACATCTACACAGATTGAGGCTAAACCCTGTTCTAATAGTCCACCTAAAGTAAAGAAAGCTCCG...ACATCAGCTCGTGCCCGTCTTATTGATCCTGGCTTTGGAATATATAAG___GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACACATACATAGTGTTACTAGAGCTTCTGA	out-of-frame	TTFAWHTEDMDLYSINYLHFGEPKSc|wkmdipylimmld*	.
TALL052	APBB1	LDB1	-/-	-/-	11:6418985	10:102111536	splice-site	splice-site	translocation	upstream	downstream	0	2	0	79	451	low	.	.	.	GCCGCGGCGGAGCCCGAACCCCGCAGCCTGAGCCACCTCCGTCATCTGGGCCCGGGGCCTCACCGCGCAG|GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTTC...CAATCTCTGGTGGGATGCATTCACGACTGAGTTCTTTGAGGATGATGCCATGTTGACCATCACTTTCTGCCTGGAGGATGGACCAAAGAGATATA___CCATTGGCCGGACCCTGATCCCACGCTACTTCCGCAGCA	.	.	.
TALL052	PPP2CB	EIF3H	-/-	-/-	8:30812320	8:116648926	splice-site	splice-site	duplication	upstream	downstream	1	1	0	217	2486	low	.	.	duplicates(3)	CGGGATCCGCATCGGGATCGGGCCGCCATGGACGACAAGGCGTTCACCAAGGAGCTGGACCAGTGGGTCGAGCAGCTGAACGAGTGTAAGCAGCTGAACGAGAACCAAGTGCGGACGCTGTGCGAGAAG|CAATCATTTGGGGAAGAATCTACAGTTGCTGATGGACAGAGTGGATGAAATGAGCCAAGATATAGTTAAATACAACACATACATGAGGAATACTAGTAAACAACAGCAGCAGAAACATCAG___TATCAGCAGCGTCGCC	out-of-frame	MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEK|qsfgeestvadgqsg*	.
TALL052	NKAPP1	RP4-755D9.1	-/-	+/+	X:120240227	X:120120852	splice-site	splice-site	inversion	upstream	upstream	1	0	0	25	0	low	.	.	.	GCAACTACTCACGCTCCTACGGGACGAGGAGAGGGAGGTGAATCCGTGGCAGAG___AAAAATAGTAGTCTAGTCATTCAAGTGAAAGGTCCAAGAAAGGAAGAAAGAAAAATTTATCAAAAAGAAAACACAAGAAGTATTCTGAAGATAGCGACAGTGACTCTGATTCTGAAACAGACTCCAGTG|ATGCGATTCCTCCCGTGATCTCAGTGATTGTATCAGGCGAAAACGAGGAGGGCAAAATACCGTCC	.	.	.
TALL052	TP73	LRRC47	+/+	-/-	1:3652641	1:3787310	splice-site	splice-site	inversion	downstream	downstream	0	1	0	13	104	low	.	.	.	GCCAGGCCAGCCGGGACGGACGCCGATGCCCGGGGCTGCGACGGCTGCAG|ACGTTGGACCTCTCGAACAACCAGCTGAGCGAGATCCCTGCAGAGCTTGCGGACTGCCCCAAGCTCAAGGAGATCAATTTCCGTGGGAACAAGCTGAGGGACAAGCGCCTGGAGAAGATGGTCAGCGGCTGCCAGACCAGATCCATCCTGG	.	.	.
TALL052	TP73	LRRC47	+/+	-/-	1:3683180	1:3787310	splice-site	splice-site	inversion	downstream	downstream	0	1	0	22	104	low	.	.	duplicates(3)	AACGGATTCCAGCATGGACGTCTTCCACCTGGAGGGCATGACTACATCTGTCATG|ACGTTGGACCTCTCGAACAACCAGCTGAGCGAGATCCCTGCAGAGCTTGCGGACTGCCCCAAGCTCAAGGAGATCAATTTCCGTGGGAACAAGCTGAGGGACAAGCGCCTGGAGAAGATGGTCAGCGG	in-frame	TDSSMDVFHLEGMTTSVM|TLDLSNNQLSEIPAELADCPKLKEINFRGNKLRDKRLEKMVS	.
TALL052	GNB2	SERINC2	+/+	+/+	7:100673923	1:31432967	splice-site	splice-site	translocation	downstream	upstream	0	1	0	249	46	low	.	.	.	GGAAGACAGCGCCGCCCGCGCACCGCCAGCGACCcCCGCCGCAGAGTCCCACCGCCACAG|TCTGCGCTCCTCAGACCACCGGCAGGTGAACAGCCTGATGCAGACCGAGGAGTGCCCACCTATGCTAGACGCC...CCCGGTGAGACCCGGAAGATGATCAGCACGTGGACCGCCGTGTGGGTGAAGATCTGTGCCAGCTGGGCAGGGCTGCTCCTCTACCTGTGGACCCTGGTAGCCCCACTCCTCCTGCGCAACCGCGACTTCAGCT	.	.	.
TALL052	SERINC2	GNB2	+/+	+/+	1:31429538	7:100676177	splice-site	splice-site	translocation	downstream	upstream	1	0	0	50	262	low	.	.	.	TCGGTCATCACCCTCTACACCATGTTTGTCACCTGGTCAGCCCTATCCAGTATCCCTG___AACAGAAATGCAACCCCCATTTGCCAACCCAGCTGGGCAACGAGACAGTTGTGGCAGGCCCCGAGGGCTATG...GCCCCGAGCATTGTGGGCCTCATCATCTTCCTCCTGTGCACCCTCTTCATCAG|GCCTCGGGCCAGCGGCCAGGAGCTGCCTCCCCCAGCCCCCGTCCCGCGGCCCCCAGCCGCCCCCAACCCTGCCCC	out-of-frame	APSIVGLIIFLLCTLFIr|prasgqelpppapvprppaapnpa	.
TALL052	CLPTM1L	CMTM3	-/-	+/+	5:1331802	16:66608310	splice-site	splice-site	translocation	upstream	upstream	1	0	0	270	270	low	.	.	duplicates(1)	GGTTTTCAGAGAAAGATGCTGATGAGGTGAAAGGAATTTTTGTAGATACCAACTTATACTTCCTGGCGCTGACCTTCTTTGTCGCAGCGTTCCAT___CTTCTCTTTGATTTCCTGGCCTTTAAAAATGACATCAGTTTCTGGAAGAAGAAGAAGAGCATGATCGGCATGTCCACCAAGG|GTCTCTCATTCATCACTTTTATCTGCTATGTGGCGTCCTCAGC	in-frame	FSEKDADEVKGIFVDTNLYFLALTFFVAAFHLLFDFLAFKNDISFWKKKKSMIGMSTK|gLSFITFICYVASS	.
TALL052	WIPF1	ATF2	-/-	-/-	2:174682774	2:175118369	splice-site	splice-site	duplication	upstream	downstream	0	1	0	210	145	low	.	.	.	GCGGACCCCGGGAGAAGTTTCCCAGAAAAAATGCCCAGCGCGGCGCGGGGCTGCGGAGTCGTCCGGAGCCGCTGCGCG|ATCAGACCCCAACACCAACAAGATTCTTGAAAAACTGTGAAGAAGTGGGTTTGTT...CCTCTAACAGGCCAATTGT___CCCTGTACCAGGCCCATTTCCTCTTCTGTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATTACAAGTTCTAATGTGCATGTTCCAGCTGCAGTCCC	.	.	.
TALL052	PRDM16	ACOT7	+/+	-/-	1:3069296	1:6294980	splice-site	splice-site	inversion	downstream	downstream	0	1	0	367	270	low	.	.	.	ATTCCGCGAGCCGACACCATGCGATCCAAGGCGAGGGCGAGGAAGCTAGCCAAAA|GTGTGACCATGAAGCTCATGGATGAGGTCGCCGGGATCGTGGCTGCACGCCACTGCAAGACCAACATCGTCACAGCTTCCGTGGACGCCATTAATTTTCATGACAAGATCAGAAAAG___CCCGAGACCGAGGACGAGAAGAAGCGCTTTGAGGAAGGCAAAGGGCGGTACCTGC	out-of-frame	MRSKARARKLAK|svtmklmdevagivaarhcktnivtasvdainfhdkirkardrgreeal*	.
TALL052	PRDM16	ACOT7	+/+	-/-	1:3069296	1:6264695	splice-site	splice-site	inversion	downstream	downstream	0	1	0	367	388	low	.	.	duplicates(2)	TGCTTCTGGACTCAAGGAGGAGGAGAGAGATTCCGCGAGCCGACACCATGCGATCCAAGGCGAGGGCGAGGAAGCTAGCCAAAA|CCCGAGACCGAGGACGAGAAGAAGCGCTTTGAGGAAGGCAAAGGGCGG...GGCAACGGGCCCAGTGTCCAGTCACTTAGAAGTTCCCCCCTTGGCCAAAAACCCAATTCACATTGAGAGCTGGTGTTGTCTGAAGTTTTCGTATCACAGTGTTAACCTGTACTCTCTCCTGCAAACC	out-of-frame	MRSKARARKLAK|trdrgreeal*	.
TALL052	HDAC7	BTBD2	-/-	-/-	12:47820485	19:1997465	splice-site	splice-site	translocation	upstream	downstream	1	0	0	11	260	low	.	.	.	GAAGTCCCTTGAGAAATTTCTTTAAAAAAAGAAAACTTTCAAAATCTGCACCACCCCCACACCCTTTTTCTTTTAATAGGAACAGGCTGGACCCTTCCGTTCCCCTCAGCAGGCATGGTGTGTGTGTGGGGGTGCCAGTGGGGGAGGGCTGGGCAGTGATTCAAATCAGATCCTGGAACTTTCCTG|AGGTTCGTGCTGGCCGTGGGCAGCGCCGTCTTTGATGCCATGTTCAACGGGGGAATGGCCACAACATCCACG	.	.	.
TALL052	MLLT1	LSP1	-/-	+/+	19:6217954	11:1891773	splice-site	splice-site	translocation	upstream	upstream	1	0	0	117	1807	low	.	.	duplicates(1)	GAAGGCCGAGAGTGAGCCCCGGGAGGCCAAAAAGGCCCTGGAGGTGGAGGAGTCCAACTCAGAGGACGAGGCCTCCTTCAAGTCCGAG___TCTGCCCAGTCAAGCCCGTCCAACTCCAGCTCCAGCTCAGACTCCAGCTCAGACTCAGACTTCGAGCCATCCCAGAACCACAGCCAAG|CTTCCTGGGTCTGCAGGTCCAGCCGGCTGGCACCCTCCATGTACCCAGGGGAGATTC	out-of-frame	KAESEPREAKKALEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSDSDFEPSQNHSQ|aswvcrssrlapsmypgei	.
TALL052	METAP1	LEF1	+/+	-/-	4:98995867	4:108079614	splice-site	splice-site	inversion	downstream	downstream	1	0	0	174	1583	low	.	.	duplicates(1)	GCTCTTCCAGCGGGCAGGCAGCATGGCGGCCGTGGAGACGCGGGTGTGCGAGACAGACGGCTGCAGCAGTGAGGCCAAGCTCCAGTGTCCCACTTGCATCAAGCTGGGCATCCAGGGCTCGTACTTCTGCTCGCAG|GTTTTCCCATCATATGATTCCCGGTCCTCCTGGTCCCCACACAACTGGCATCCCTCATCCAGCTATTGTAACACCTCAGGTCAAACAGGAACATCCCCACACTGAC	out-of-frame	MAAVETRVCETDGCSSEAKLQCPTCIKLGIQGSYFCSQ|vfpsydsrsswsphnwhpsssycntsgqtgtsph*	.
TALL053	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	43	0	115	68	high	.	.	duplicates(3),low_entropy(3)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCACCTTCCTGAGCCACCCGTGGCCAGGCTCTGCTGGCCGCATCTGCCTGGCCCCATCTACCTTCCCTGGAAGCACAGGACTCACCCCAGGGGTCTCAC	.	.	.
TALL053	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	11	16	9	68	96	high	.	.	duplicates(2),mismappers(1),mismatches(1)	GCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...GG...___...GGAGAGAGAGCCTTTTGATCATCTTGCGGGGC?GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCC...CAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCGAGGACTACC...GGCAGCGCTGCACTCGGAGCGCATGTCgGGCCTCAGCGCGGAGAG___GCTGCAGATGGACGAGGAGCTAAGGCGGGAGAGGGAGCGCGAGCGCG	.	.	.
TALL053	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	6	20	1	70	70	high	.	.	duplicates(4)	CGCGGAACCAGTGCGGGGCGCTGATTGGTCGGCACACCAATACGTAACGGCGACCGTGCGCGGCTCTCTAGCACCACCCCCGCTCCCTGACTGGCGAGGTTTCTGACCAGTCAGCAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGA...GCAGACCTCCCGGGCCCGCCCCGGCCCCCGCGCCCGCCgCGGTTACAGCGGAGCTGCCCGGCGACGGCCGCATGGTGCAGCTGAGTCCTCCCGCGCTGGCTGCCCCCGCCGCCCCCGGCCGCGC	.	.	.
TALL053	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	4	6	0	70	108	high	.	.	duplicates(4),low_entropy(1)	CGGCACACCAATACGTAACGGCGACCGTGCGCGGCTCTCTAGCACCACCCCCGCTCCCTGACTGGCGAGGTTTCTGACCAGTCAGCAGGCGTGGCGCGGCCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGGGGCGGCGCCGCGAGAGACTTAAAGGGCCGCGACGCGGCGACGGCCGAAGCGCGC	.	.	.
TALL053	STIL	TAL1	-/-	-/-	1:47314036	1:47224098	splice-site	splice-site	deletion/read-through	upstream	downstream	1	4	0	70	91	low	.	.	low_entropy(1)	ACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAGCAGAATGTGAACGGGGCCTTTGCCGAGCTCCG	.	.	.
TALL053	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	11	0	37	35	high	.	.	low_entropy(1)	CCGGGCTCCAGCACGACCCCGCCGCTCGGGTTTGGGTGTCCTCAGGCTCCGCGCTCCTCCTCCCCTCCTCCAGATGGGACTGGCTCTCCTCTTTGCAAAGCCAGGCTCGCGGGGAGACGTGGTGAGCAGTAGC...ACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCCTCATTCCCAATGCCATCCAAGTTTGCACTGATTCAGAAAAG___C	.	.	.
TALL053	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	7	0	43	32	high	.	.	duplicates(3),low_entropy(3)	CCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATC...GCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAG...CCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAG	.	.	.
TALL053	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	12	26	7	111	57	medium	.	.	duplicates(4),low_entropy(1),mismappers(1),mismatches(1)	G___...CCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAG	.	.	.
TALL053	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	15	5	207	740	medium	.	.	duplicates(2),low_entropy(1)	CACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___...TTACACTGGAT...___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL053	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	40	740	low	.	.	duplicates(2),read_through(14)	GCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL053	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	2	2	12	96	medium	.	.	mismappers(1)	GCCACGGCTGGCGGTGCGTGAAGCCGGGGGCGCGGGGCCGGGGGGCGGCGTGAGCGGCTGCGGGGCCCCCAGGCGCCCCGGCCCCTCCCCGGGCTCCACGCCGCGGGCAGGGCGCACCGCGCAGGGACGCCCC...CGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTC	.	.	.
TALL053	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	2	2	0	5	63	medium	.	.	.	GGAAAATACATGTACAGCCAACTTCCTTGAGGGTTCGTTCTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGC...GGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTcGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTG	.	.	.
TALL053	NCOR2	CDK2AP1	-/-	-/-	12:124400501	12:123267282	splice-site	splice-site	deletion	upstream	downstream	1	0	1	383	500	medium	.	.	.	CGAGAAGGAGGCTGTGGCCTCCAAAGGCCGCAAAACTGCCAACAGCCAGGGAAGACGCAAAGGCCGCATCACCCGCTCAATGGCTAATGAGGCCAACAGCGAGGAGGCCATCACCCCCCAGCAGAGCGCCGAGCTGG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCC	in-frame	EKEAVASKGRKTANSQGRRKGRITRSMANEANSEEAITPQQSAEL|aGSVHSPSTSMATSSQYR	.
TALL053	NCOR2	CDK2AP1	-/-	-/-	12:124437930	12:123267282	splice-site	splice-site	deletion	upstream	downstream	1	0	0	475	500	low	.	.	.	GCGGGGGAGTAAGGATGCACGTTGGCAGCTCACAGGTCTCTCTGGGGATACAGCACGGGTGGGTCTCATCTCCCTGAGAACCAATAACGGGGCAAATTTGGGGCTCACTCTCAGCAAACAGGATGGCACGGG...CCTCCTGCACAGAAACCAGGCGATGCGGAAGAAGCTAATCTTGTACTTCAAGAGGAGGAATCACGCTCGGAAACAATGG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCC	out-of-frame	llhRNQAMRKKLILYFKRRNHARKQW|lgvstrlppawqrlhst	.
TALL053	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	10	0	0	664	44	low	.	.	low_entropy(3),mismappers(2)	TGGATAGGAGCAACCCTGTAAAACCAGCCTTAGACTATTTTTCAAACA___...TGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACA?CCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGAC	.	.	.
TALL053	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	4	0	51	10	low	.	.	duplicates(1),mismatches(1)	GGCAG___...GCTTTAGATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCT	out-of-frame	ALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRTQQLASIVA|gctgesklfwrcpka*	.
TALL053	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	2	2	1	126	181	low	.	.	duplicates(1)	AGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCC	.	.	.
TALL053	MOB1B	GRSF1	+/+	-/-	4:70902550	4:70836314	splice-site	splice-site	inversion	downstream	downstream	4	0	1	153	572	low	.	.	duplicates(1)	GCAACTATAAGGAAGTCCTCTCAAACGAACCACACCATCATTTACCACAGGCGAAGATTTGACCTGCAAGCTCTTCATTAAGGCATCCACATCTTCATTGTTTATCTCATATA___CTTCCACATACCGCTGGCCC...GCTGAGCCGAACTAGTTGCGGCCACCGAGCAGCCGGCTCTCGGCACCTCCTCCTCCGCCTCCCTGTCTCCTGTTCCATTCGCCTTTCCTCTTCTTTCCTGGCCCACGCCGCTCCGAGGCCTCGCGACCGCCGAGCCTGCAGCCTGCCCCGCGGCCAACATGAGCTTCTTGTT|GAGTCCAAAACTACTTACCTGGAAGACCTTCCACCACCCCCTGAGTATGAATTGGCCCCGTCCAAGTTAGAAG...GACTGCCCTGGTCATGCACTATGGAAGATGTGCTTAACTTTTTTTCAG___ACTGCAGAATCCGCAACGGTGAGAATGGAATACATTTTCTCCTAAACAGAGATGGGAAACGAAGGGGTGATGCCTTAATTGAAAT	out-of-frame	MSFLl|spklltwktfhhplsmnwprps*	.
TALL053	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	0	4	0	14	97	low	.	.	low_entropy(1),mismatches(1)	CTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGAaGTACAGC...AGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAAGACGTCATTACTCTACGGAGACATGTGGAAACAAAAG	.	.	.
TALL053	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528417	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	46	97	low	.	.	.	CTAACAGACTTTCAACAGAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGG	.	.	.
TALL053	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	0	3	1	136	4	low	.	.	.	CGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTG...CCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGACCAATTAACCTGAGCTGCTGAGGACTCTGAGAAGCTTCCCTTATGCTGTGGTTATGTGGGATTTCCCAGGTCAGTGTCAGTTGTGTAAAATACAGAGGTCTCCAATGGATGATGGGTAGTTTATG	out-of-frame	RNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|elksgipgrdpeppvqppegqsilwiprevt	.
TALL053	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	2	135	384	low	.	.	duplicates(1)	GGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTT	in-frame	AVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDV	.
TALL053	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	2	105	384	low	.	.	duplicates(1)	TTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTT	out-of-frame	FVPTs|lke*	.
TALL053	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	2	91	322	low	.	.	duplicates(1),mismatches(1)	CTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGcTTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGG...GACACCATCCTGTCCGTGCACCCCTCTGATGTGCTGGACATGCCCGTGGACCCAAACGAACCCACGTACTGCCTGTGCCACCAGGTCTCCTATGGGGAGATGATTGGCTGTGACAATCCAGAC___TGTCCAATTG	.	.	.
TALL053	HTRA1(25982),DMBT1(19775)	DMBT1	./+	+/+	10:122540890	10:122565967	intergenic	splice-site	deletion/read-through	downstream	upstream	0	2	1	2	6	low	.	.	.	GCCTATTCTTCTTTCATGACTTGGCCCAGCTACCGCCTTCAGGACTTGATGCTCTTACTCTGTGCCACTCTCTCCAGCAAGGGGACTCTCCTAGGTGCCCTCATGGTCTCTTTGGTTACCTGATTGCACTGT...GTAAGCTCTTCAGGGACCTTATTTTATTCATGCTGACTCTCAATGCCTGGGCCAAGACCTGACATGGA|GTGGGTGGATCCCAAGGACTACAGACTACG___CTTCACTGATTCCCTCGGAGGTGCCCTTGGATaCAACTGTAGCAGAAG___GTTCTCCATTTCCCTCGGAGTtGACCCTGGAGTCAACTGTAGCAGAAG___GTTCTCCGATTTCCTTGGAGTCAACCCTGGAGTCAACtGTAGCAGAAG___GTTCTCTGATTCCCTCAGAGTCAACCCTGGAGTCAACTGTAGCAGAAG___GATCTGATTCTGGTTTGGCCCTGAGGCTGGTGAATGGAGATGGCAGGTGTCAGGGCCGAGTGGAGATCCTATACCGAGGCTCCTGGG	.	.	.
TALL053	AKR1E2	AKR1C2	+/+	-/+	10:4908420	10:4933237	intron	intron	deletion/read-through/5'-5'	downstream	upstream	2	0	1	12	16	low	.	.	mismappers(1),mismatches(1)	GTTATTCCCAGTGACACGGACTTCCTGGACACGTGGGAG___ATTTTGATCCGATTTCAAATCCAGAGGAATGTGATAGTGATCCCCGGATCTATCACCCCAAGTCACATTAAAGAGAATATCCAG___GTGTTTGATTTTGAATTAACACAGCACGATATGGATAACATCCTCAGCCTAAACAGGAATCTCCGACTGGCCATGTTCCCCATGTAAATAT...GTTTCTCCTTGCCTTCTGTCATGATTGTGAGGCTTCCCCAGACACTTGGAACT___GCACAAAAACaTGTTTTGAACCTACTCTAACCAACTGTCAAAAGGCTGTGTTAAGTGATTCTCTGACAAG|AACCTTGGCCATTCTGATGTTTAACCAAGAGTTGAGCTGAGTGGCTCTGACCAGCGTGGAAGATGAGAGCAGCCTGAACTTACACTGTGAAAAT___ACTCAGGAACTTCAAATGCGCTATCCCTATGTGTATTGATTATATCTTCATCCTGCTCAAAGTTGCTATTGAAACACCCTCTGGTGAGTTCTTCA	.	.	.
TALL053	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	0	1	2	117	25	low	.	.	.	CCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___G...GAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGAT...GGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAA	out-of-frame	EFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsct	.
TALL053	CUTC	ABCC2	+/+	+/+	10:99754634	10:99782781	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	0	2	106	2	low	.	.	.	GCAGGATTGTGGTAATGCCAG___GAGGTGGTATAACAGACAGAAATCTACAAAGGATCCTTGAGGGTTCAGGTGCTACAGAATTCCACTGTTCTGCTCGGTCTACTAGAGACTCGGGAATGAAGTTTCG|TAAAGAAGAAACAACACAATCATATTAATAGAAGAGTCTTCGTTCCAGACGCAGTCCAG...CAACTCTACTTTTTGG___AATTCCTCATTCCTGGACAGTCCGGAGGCAGACCTGCCACTTTGTTTTGAGCAAACTGTTCTGGTGTGGATTCCCTTGGGCTtCCTATGGCTCCTGGCCCCCTGGCAGCTTCTCCACGTGTATAAATC	out-of-frame	RIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFr|keettqsy*	.
TALL053	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	1	1	17	18	low	.	.	duplicates(1)	CAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAG	out-of-frame	KNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVR	.
TALL053	IL10RB	IL10RB(10951),AP000295.10(1306)	+/+	./+	21:33288261	21:33308185	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	75	6	low	.	.	low_entropy(1)	CGAAACTTGGACTATGAAGAATGTGTATAACTCATGGACTTATAATGTGCAATACTGGAAAAACGGTACTGATGAAAAG___TTTCAAATTACTCCCCAGTATGACTTTGAGGTCCTCAGAAACCTGGAGCCATGGACAACTTATTGTGTTCAAGTTCGAGGGTTTCTTCCTGATCGGAACAAAGCTGGGGA...CCTCATGGCCTCGGTCTTCATGGTCTGCCTGGCACTCCTCGGCTGCTTCGCCTTGCTGTGGTGCGTTTACAAGAAGACAAAGTACGCCTTCTCCCCTAGGAATTCTCTTCCACAGCACCTGAAAGAG|CTCTCTGGCATCAATTTTTCCACTTCTCAGAAACACTTTGGCCCACAAATTCCCAAAGGAACCTTGTTCTTCATTCTGGAAAACACGATGCCAACATATCAGAATAAAGGACAGATAGGAGC	out-of-frame	LMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE|lsginfstsqkhfgpqipkgtlffilentmptyqnkgqig	.
TALL053	KIAA0232	TBC1D14	+/+	+/+	4:6782841	4:6923373	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	61	59	low	.	.	.	GCTGGGGCCGCCGCCGCCGCTTTACGTAAGGCGCAGGCCAGGGCCGCCCGGCGCTCGGCAGCCGCCCGCAGCCCCTCGGAGCCAGAGGAGAGGCGCCCCCGCCGGCCGCCGCGCCGCCCGGCAGCCTCGGCAG|TTTCTCCTTGGACCAAGATGACTGATGGAAAACTCTCCACCTCTACAAATGGCGTAGCCTTCATGGGTATTCTGGATGGTCGACCAGGAAACCCCCTTCAGAACCTGCAACACGTCAATCTCAAGGCGCCCCGACTCCTCTCCGCGCCTGAGTACGGGCCCAAGCTGAAACTCAGGGCTTTAGAAGACCGcCAC	.	.	.
TALL053	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	18	125	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	GGGCTTCCTTCCTGACTTCAGCACAGCAGCACCTGTCACCACTCACCTCAAGAGGTGaCTCCCGAGCCTCCTGGGAGGGAAGGGGCCATGGCAGTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCAC...___ATCTGCCTGCATAcTGTGCCCCGCCTGGACCAGCTCCTGGGACCCAGCT___GCAGCCGCTGGGAGACCCTCTCGCGACACATAGGGGTCACAAG___GCTGGACCTGAAGGACATCCCCAACGCCATCCGGC...GCGGGCGCCTTGCAAGGAACACCCGGCAGAGCCCACATCCACGGGAGCTG___GATGATGATGAGAGGGATGTGGATGCCAGCCCGACGGCAGGGCTGCAGGAAGCAGCAACGCTGGCCCCTACACGGAGGTCACG	.	.	.
TALL053	MLLT11	GABPB2	+/+	+/+	1:151060553	1:151088190	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	404	55	low	.	.	low_entropy(1)	GAACTGACAGACTCAGTCACTGAAGAGGGAAAAGGAGTGAGAAGACAAAGCCGTCAAAGCCCCAACAGCTTTGTATTTCTCCAGCCCGGCGCAGACCCCGGAGCTCCCGAGGCACTCCCTCCATCTTTGGAACACGCCAGTAATTGATTGATAACAG|ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAACGTTGATGGCAAATGGCGCCCCATTCACCACAGACTGG___AATGGTGCAGATGTGAATGCCAAGGACATGCTGAAGATGACAGCTTTGCATTGGGC...AATCCAGAGAGAGCCAACCCTGTGACTGACCCTGTGAGTATGGCTGCTCCATTCATCTTCACGTCGGGTGAGGTTGTTAACCTCGCAAGCCTTATTTCTTCAACCAACACCAAAACAACCTCAG___GTGACCCCC	.	.	.
TALL053	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	0	2	1	3	5	low	.	.	duplicates(1),low_entropy(1)	GTAATTTCTTTCAGAAG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTC...GAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACT	in-frame	KSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEENIT	.
TALL053	RP11-120D5.1	MID1	-/-	-/-	X:11106898	X:10677467	intron	5'UTR	deletion	upstream	downstream	0	0	2	13	0	low	.	.	mismappers(1)	TGGAGATCCAAAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAGaTA...|...AAG___ATAGCTGATCAGCTTCCTTGGGTTTTGCTGATGACACAAGAGAGCTTTGCCTGAAGATGGAAACACTGGAGTCAGAACTGACCTGCC	.	.	.
TALL053	FRDAP(110396),RNA5SP388(7129)	NRXN3	./.	+/.	14:78170674	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	1	1	0	4	2	low	.	.	.	.	.	.	.
TALL053	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69084016	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	0	31	6	low	.	.	.	CTCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GAGGCCG...ATCATCCCCAGCATGAAG___CTGATGGCCGTGGTGGCCAGTACCGTCCTGGGCCTGGTGCAGAACATGCGTGCGTTTGGCGGGATCCTGGTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAG	out-of-frame	IIPSMKLMAVVASTVLGLVQNMRAFGGILV|*	.
TALL053	YARS2	FGD4	-/-	+/-	12:32745680	12:32671702	intron	intron	deletion/read-through/5'-5'	upstream	downstream	0	1	1	27	2	low	.	.	duplicates(1)	TCAGT___GCAGCAGAGCATGGCTTTAGTGTTCAAATTCTAGCCATTTACTACCTGGATTACTTGGAGCAAGTCACTGTCTTCATACGCAAAAATGGAGATGTTATAATACCTTGGTGAACTGTCAGAATCTG|ACAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACCGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGtCTCCC...GCAGCAAAGCTGTGCACGGACTTAGACTGGGTCAGTTTGAAACTGTGTGGCAGGTCTGCGCTCCTTGGCATTTCATCCACCACATAGCCCAGAAGTGGAATGGTGGCCTGGGCTCTGACGTCCTAAAGAAAAG	.	.	.
TALL053	MCCC2	LRIG2	+/+	+/+	5:71644261	1:113110508	intron	CDS	translocation	downstream	upstream	0	0	2	7	35	low	.	.	.	TTTACATTAACATGCTGTGACGAACCATCTGGAGCACTATTAAAAATGTACTCATTTTAGGAAAATTCTCCTAAGATACTTGAGTTATAATTGCTATAGAGGACATGTACATATTCTCAGTTGATAGAGAATAC...|...GTTACTAATCACTTTGGTTCTAATTATTCTCAGAAAGCCAAACTGACTGTAAATG___AGATGCCATCTTTTCTGAAAACGCCAATGGATCTGACTATTCGCACTGGTGCCATGGCCAGATTAGAATGTGCTGCAG	.	.	.
TALL053	NUDCD1	TRHR(71068),NUDCD1(50267)	-/-	./-	8:109245322	8:109190652	splice-site	intergenic	deletion/read-through	upstream	downstream	1	1	0	106	5	low	.	.	mismatches(1)	TGCATTTGACCTCTGAAGAACTG___AATCCAAATCCAGATAAAGAAAAACCACCTTGCAATGCTCAAGAGTTAGAAGAATGTGATATTTTCTTTGAAGAGAGCTCCAGTTTATGCAGATTTGATGGCAATACATT...CTGTCATAGTGGATCCTAAAGAAATGCCCTGCTTCTGTTTGCGCCATGATGTTGATGCCCTACTCTGGCAACCACACTCCAGCAAACAAGATGATATGTGGGAGCACATCGCAACTTTCAATGCTTTAG|CTCCAGCTCTGATGGCTCTCCTGGGCTCAAGTTCTTCATTCTCAGCTGCCCAGTGAAGATTTGCATTTGGATGTTCAGTGGCCACATTAAACCTCAACATATCTACAGCTGAATTCTCA	out-of-frame	VIVDPKEMPCFCLRHDVDALLWQPHSSKQDDMWEHIATFNAL|apalmallgssssfsaaq*	.
TALL053	UXS1	TRBV30(2329),EPHB6(39333)	-/-	./+	2:106093458	7:142815728	3'UTR	intergenic	translocation	upstream	upstream	0	0	2	59	66	low	.	.	.	GTCAGGTGGTGGTGCGCCGGCATTGATTTTAGGGCAGATAAAAGAATTCTGTGTGAGAGCTTTATGTTTCTCTTTTAATTCAGAGTTTTTCCAAGGTCTACTTTTGAGTTGCAAACTTGACTTTGAAATATTC...|...AGATTCTTAATGAATTGCTGCCAACAAGAGAAAGCTTTATACATGAAGAGAATGGCAATAAGAACTAACTCGTCTTTTTAATTTTAAAACTGGTATATATTCCTATATAATAGGAATGGAAGATACTTGCAA	.	.	.
TALL053	EEF1A1P6	RAPGEF5	-/-	-/-	7:22511185	7:22328301	exon	intron	deletion/read-through	upstream	downstream	0	0	2	1289	1	low	.	.	mismappers(1),mismatches(3)	GTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGtTGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTC...|...GCCCATGTCC	.	.	.
TALL053	BBS9	BBS9(19262),RP11-89N17.1(100651)	+/+	./+	7:33605732	7:33625330	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	1	1	2	1	low	.	.	.	GGATTTATGAGTGATTGCTgTACATTATTTCTTCAAAGGAAAGGAAAGGAATTGAAGACTTTGCTACTCTCTG|GCaCTGAATTCTACTCATATTATAGCACCTACTCATCTTAACAGCCATATGAAGAAGGTATTATTTCTGTTGTCCACATGAGGAAACTGCCAAGAAATTTGCCCAGGGTTACATAGGTG	.	.	.
TALL053	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	0	1	1	6	3	low	.	.	.	CCCAAAGCCGgGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTgAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAA	out-of-frame	QSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL053	NF1	RCC1	+/+	+/+	17:31095369	1:28508128	splice-site	splice-site	translocation	downstream	upstream	0	2	0	77	417	low	.	.	.	GGAATGGGTCCAGGCCGTGGTCAGCCGCTTCGACGAGCAG|GATTTGTTAAGGATTCCAAGTAACTCTTATTTG___GAGAGAAGACGATCTGCACTTCGCATTTTGGCATTGACATTTAATTTTAGGGTCCTTTATATAGAAGGGAGAGTAGGTAAACTGATTTTTTTTTTTAACAGGG	out-of-frame	EWVQAVVSRFDEQ|dllripsnsylerrrsalrilaltfnfrvlyiegrvgklifffnr	.
TALL053	NF1	SNHG3	+/+	+/+	17:31095369	1:28508128	splice-site	splice-site	translocation	downstream	upstream	0	2	0	77	417	low	.	.	.	GGAATGGGTCCAGGCCGTGGTCAGCCGCTTCGACGAGCAG|GATTTGTTAAGGATTCCAAGTAACTCTTATTTG___GAGAGAAGACGATCTGCACTTCGCATTTTGGCATTGACATTTAATTTTAGGGTCCTTTATATAGAAGGGAGAGTAGGTAAACTGATTTTTTTTTTTAACAGGG	out-of-frame	EWVQAVVSRFDEQ|dllripsnsylerrrsalrilaltfnfrvlyiegrvgklifffnr	.
TALL053	NCK1	MSL2	+/+	-/-	3:136862353	3:136152738	splice-site	splice-site	inversion	downstream	downstream	0	2	0	78	949	low	.	.	.	CTCGTGCCGTTACGGCCATCACGGCGGCCGCAGTGGCGTCCTGGAGCCCTCCTCAGGTGAGCTGGAGCTGCCCGGCTCGGCAGCGGGAAG|GACATTTGCTACAAGATCCTATTGCACCCACCAACTCCACCTGCCAACATTATGTCTGCAAAACTTGTAAAGGCAAGAAAAgGATGATGAAACCTgCCTGTAGCTGGTGCAAAGACTATGAGCAGTTTGAGGAAAACAAGCAGTTAAGCATCCTAGTGAACTGCTACAAAAAACTATGCGAGTATATAACACAGACTACACTGGCACGGGATATAATAGAAGCAGTTaACTGTTCTTCTGATATTTTGGgTTTGCTTAAT	.	.	.
TALL053	TMCO3	RASA3	+/+	-/-	13:113539507	13:114073837	splice-site	splice-site	inversion	downstream	downstream	1	0	0	119	34	low	.	.	.	GTCTCCATGGAGCTGGGCTGTTTCCTGGCTGGAGCGCTCGTCTCCTCTCAGGGCCCCGTGGTCACCGAGGAGATCGCCACCTCCATCGAACCCATCCGCGACTTCCTGGCCATCGTTTTCTTCGCCTCCATAG|GTGAAGCCAAAAACCTTCCCTCTTACCCGGGGCCGAGCAAGATGAGGGATTGCTAC	in-frame	VSMELGCFLAGALVSSQGPVVTEEIATSIEPIRDFLAIVFFASI|gEAKNLPSYPGPSKMRDC	.
TALL053	CHD6	SEC23B	-/-	+/+	20:41618340	20:18560651	splice-site	splice-site	inversion	upstream	upstream	0	1	0	52	128	low	.	.	.	AAATAATAGCTGTTTGTATTTTGGCTGCTGCAGGAGCCATTTTAG|GAAACTGGAGCACCCATCCTAACTGATGATGTTAGCCTGCAGGTGTTCATGGACCATTTGAAGAAGCTGGCTGTCTCCAGTGCCTGTTAAGCTGAGGATACAACCAGGAAATGCAACGGTGTCAGATTGTGTTCAAAATGTCTAGAAAGGCTTGATAACATTCCTGTTACTTTTC	.	.	.
TALL053	ANKRD11	TCF25	-/-	+/+	16:89305206	16:89892193	splice-site	splice-site	inversion	upstream	upstream	1	0	0	220	306	low	.	.	.	CGGCCGTGTAAATGAAGATCGGGTGAGGAGCAGGACGATGCCCAAGGGTGGGTGCCCTAAAGCACCACAGCAGGAAGAGCTTCCCCTCAGCAGCGACATGGTGGAGAAGCAGACTGGGAAAAAG___GATAA...GTGAGGGAGCGAGCCAGCAAGCGGAAGCTGCCCTTCACCGCGGGCGCCAATGGGGAGCAGAAGGACTCGGACACAG|GCCACGGCAGAGACAACGTGTGTACCCCAAGTGCACATGGCTGACCACCCCTAAAAG	out-of-frame	VRERASKRKLPFTAGANGEQKDSDT|ghgrdnvctpsahg*	.
TALL053	GALNT7	UBE2I	+/+	+/+	4:173168961	16:1320174	splice-site	splice-site	translocation	downstream	upstream	0	1	0	215	993	low	.	.	.	GGCTAGTGGTCCTCTGGTCTTCCCTGACCCCGCGGCCGGACGACCCAAGCCCGCTGAGCAGGATGAGG|GTAAATTCGAACCACCATTATTTCACCCGAATGTGTACCCTTCGGGGACAGTGTGCCTGTCCATCTTAGAGGAGGACAAGGACTGGAGGCCAGCCATCACAATCAAACAG___ATCCTATTAGGAAT	out-of-frame	LVVLWSSLTPRPDDPSPLSRMR|vnsnhhyftrmctlrgqcacps*	.
TALL053	SPEN	GTSE1	+/+	+/+	1:15848150	22:46323190	splice-site	splice-site	translocation	downstream	upstream	0	1	0	116	97	low	.	.	.	CGGCGGTCGCCGGCACGCCGCCCAGCATGGTCgGGGAAACCAGGCATCTCTGGGTGGGCAACTTACCCGAGAACGTGCGGGAAGAGAAGATCATCGAGCATTTCAAACG|GTGACTCCCCGGACAGCTCAACAC...ATGACCCCCAAAACGATGCCCAGGGCCGTGGGCTCTCCCCTGTGTGTGCCAGCTCGGAGACGTTCCTCTGAGCCCCGCAAGAACTCTGCAATGAG___GCTCTTCTTGTAGATATCAAACTGGAACCACTCGCGG	out-of-frame	MVgETRHLWVGNLPENVREEKIIEHFKr|*	.
TALL053	GTSE1	SPEN	+/+	+/+	22:46316412	1:15872816	splice-site	splice-site	translocation	downstream	upstream	1	0	0	86	114	low	.	.	duplicates(1)	CTGAACTCCAGTTGCGCTTGGTCAGAATCTTCTCAATTGAATAAGACTAGAAGTATCAGACGGCGAGATTCCTGTCTAAATTCCAAGACAAAGGTTATGCCTACTCCTACAAATCAATTTAAAATTCCTAAGTTTTCTATTG|ATATGGCCGCGTGGAAAGTGTCAAAATTCTTCCCAAGAGGGGATCTGAAGGAG	out-of-frame	LNSSCAWSESSQLNKTRSIRRRDSCLNSKTKVMPTPTNQFKIPKFSI|dmaawkvskffprgdlk	.
TALL053	SUMO2	FOXK2	-/-	+/+	17:75182814	17:82563354	splice-site	splice-site	inversion	upstream	upstream	1	0	0	2557	233	low	.	.	.	CGCCTCCTTCTTCTGCCGCTCCTGGTGCTGCTTGTGTGCTCGTTTGGTGCGGACCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACTCCGGCGCTCGCCATGGCCGACGAAAAGCCCAAG|GTGCACATTCAGGTTCCCGAGCACAAACATCAAGATAACGTTCACTGCCC	out-of-frame	MADEKPK|vhiqvpehkhqdnvhc	.
TALL053	KLHL24	TBL1XR1	+/+	-/-	3:183635793	3:177026474	splice-site	splice-site	inversion	downstream	downstream	0	1	0	207	287	low	.	.	.	TGCGCCGCCCGCCGCTGAGGGACCGCGGGGTTAGCCACTGCTGGCTGCTTCCAGTGTTCGCCGAGAGGTACCGGGGGTGACAGCTCCGGGACCGGCCGAAAGGCGAGGgACCG|ACAGGTGCTCTAGTTCACAGCTATAGGGGAACAGGTGGAATATTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTTGGAGCCAGTGCATCAGATGGTTCA___GTTTGTGTATTAGACCTTCGGAAATAGCGC	.	.	.
TALL053	PRKAR1B	MAD1L1	-/-	-/-	7:579256	7:1816228	splice-site	splice-site	duplication	upstream	downstream	0	1	0	354	172	low	.	.	.	GGAGCGTCTGACCGTGGCGGATGCGCTGGAGCCCGTCCAGTTTGAAGATGGAGAGAAAATcGTGGTCCAGGGAGAGCCTGGGGACGACTTTTACATCATCACGGAG|GCCACCAGCCCCTCGGGTTCCAAGATG...CAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAGCCTGCAGGCTCGGG	in-frame	ERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITE|ATSPSGSK	.
TALL053	MAD1L1	PRKAR1B	-/-	-/-	7:1936687	7:551470	splice-site	splice-site	deletion	upstream	downstream	0	1	0	182	284	low	.	.	duplicates(1)	GGAGAGAGGAGGCACCGTCCCAGCCGACCTTGAGGCTGCCGCCGCGAGTCTGCCATCGTCCAAGGAGGTGGCAG|GGCACCGCGTCCGTGCTGCAGCGCCGGTCCCCCAATGAGGAGTACGTGGAGGTGGGGCG...CCAGTGTGGTGGCCGTGCCCTGCTCGTCTGTGTCGGGGGCCCGGGAGCCGCTGTGTGAGGTGTGGGCCGGGTGGGGCTGGGTCCCGGCAGCGTGAGGACTGCCCCTTCCCCGGACTCACTTTTTGGAATAAAT	out-of-frame	ERGGTVPADLEAAAASLPSSKEVA|ghrvraaapvpq*	.
TALL053	PRKAR1B	MAD1L1	-/-	-/-	7:606193	7:1898390	splice-site	splice-site	duplication	upstream	downstream	0	1	0	458	214	low	.	.	.	ATTCGATGCCATGTTCCCTGTCACTCACATCGCTGGGGAGACTGTTATACAGCAAG___GGAATGAAGGAGACAACTTCTATGTCGTTGATCAAGGGGAAGTGGAT|AGCTGAAGAAGCAGGTGGAGAGTGCCGAGC...GCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAG___GCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAG	out-of-frame	FDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVD|s*	.
TALL053	SLC12A7	HMGB3	-/-	+/+	5:1111868	X:150985595	splice-site	splice-site	translocation	upstream	upstream	0	1	0	232	363	low	.	.	.	CGAGACTGCCGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGG|TCAGGATGGCTAAAGGTGACCCCAAGAAACCAAAGGGCAAGATGTCCGCTTATGCCTTCTTTGTGCAGACATGCAGAGAAGAACATAAGAAGAAAAACCCAGAGGTCCCTGTCAATTTTGCGGAATTTTCC	in-frame	ETAERTEAPGTPEGPEPERPSP|vrMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEF	.
TALL053	FOXK2	CSNK1D	+/+	-/-	17:82571870	17:82252604	splice-site	splice-site	inversion	downstream	downstream	0	1	0	214	379	low	.	.	.	CACATCACTAAAAATTATCCCTACTACAGGACTGCGGACAAGGGCTGGCAG|AACAATCCCGAAGAGATGACTTGGAGTCTCTGGGCTACGTGCTAATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGGGGCT...AAAGGATTAGCGAGAAGAAAATGTCCACCCCCATCGAAGTGTTGTGTAAAGGCTACCCTT___CCGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTGCGTTTTGACGACAAGCCTGACTACTCGTACCTGCG	out-of-frame	HITKNYPYYRTADKGWQ|nnpeemtwslwatc*	.
TALL053	CSNK1D	FOXK2	-/-	+/+	17:82273306	17:82563354	splice-site	splice-site	inversion	upstream	upstream	0	1	0	400	233	low	.	.	.	AGCGAATCGGGCCGCCGCCGCCATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGCTCCTTCGGAGACATCTATCTCG|GTGCACATTCAGGTTCCCGAGCACAAACATCA...CAACATTCCAGACACCATGGCCCACCTCATCAGCCCTCTGCCCTCCCCCACGGGAACCATCAG___CGCTGCAAACTCCTGCCCCTCCAGCCCCCGGGGAGCGGGGTCTTCAGGGTACAAGGTGGGCCGAGTGAT	out-of-frame	MELRVGNRYRLGRKIGSGSFGDIYL|gahsgsraqt	.
TALL053	NCOR2	MIDN	-/-	+/+	12:124567308	19:1249890	splice-site	splice-site	translocation	upstream	upstream	1	0	0	126	122	low	.	.	.	GGGGACCCAGGGCCGGCGCCCTAGGAGGCGGCGGCGGGAGGATCGCGTCCCGACCCGAGGCCGGGCCTGCTGCGCGCCCCCAGCCCGATCGGCACCGCCACTTGCCTGAGCGCCCCGGCGGCCCGAGCGCGCCCCAAGCCCGGGCGCCACCGCTGCCACCTCCGCGAG|ATCCTCCGAGCGGCGGCGACGGCTGTTGCTAAGGGAGGGGACGCGCGAGGAAGC	.	.	.
TALL053	NCOR2	MIDN	-/-	+/+	12:124398119	19:1251562	splice-site	splice-site	translocation	upstream	upstream	0	1	0	393	160	low	.	.	.	GCCTCCATGGAGCTGAATGAGAGTTCTCGCTGGACAGAAGAAGAAATGGAAACAGCCAAGAAAG|CCGGCTCAGTTCGGGGAAGCTGCAGGAGTTCGGCGTGGGTGATGGCAGCAAGCTGACCTTGGTAC...CGTGTCCTCGCCCTGCCGGCCGGTGTCCAGTGCCGCCCGAGTCCCCCCGGTGCCCACCAGCCCGTCCCCTGCATCTCCCTCGCCCATCACAGCCGGCTCCTTCCGGTCCCACGCAGCCTCCACC	out-of-frame	ASMELNESSRWTEEEMETAKK|agsvrgscrssawvmaas*	.
TALL053	STAG1	NCK1	-/-	+/+	3:136752195	3:136927984	splice-site	splice-site	inversion	upstream	upstream	1	0	0	247	406	low	.	.	.	GGAAAATGCCACCAGATGGCGGGTTAGGATTGCAGCTCCGTTGAAGGCGCGGCCCCCGCTCCCGAACCCCCGGCGACCACCCCGTAACAACCCCCCCACATCGGGAATAACACACCGGAGACTTTTGGGGGGAAACTAGGTCGATGGTCGGCGGCGCCCGGATGGGCAGCTGAG|TGCTGAAGCTGCTGAAAGATGGCAGAAGAAGTGGTGGTAGTAGCCAAATTTGATTATGTG	.	.	.
TALL053	SPEN	ZBTB17	+/+	-/-	1:15848150	1:15948497	splice-site	splice-site	inversion	downstream	downstream	1	0	0	116	199	low	.	.	.	CGTACGAAGCCGGCGAGGGGGAGCCAGCAGCGGCGGTCGCCGGCACGCCGCCCAGCATGGTCCGGGAAACCAGGCATCTCTGGGTGGGCAACTTACCCGAGAACGTGCGGGAAGAGAAGATCATCGAGCATTTCAAACG|CCATGGACTTTCCCCAGCACAGCCAGCATGTCTTGGAACAGCTGAACCAGCAGCGGCAGCTGGGGCTTCTCTGTG	out-of-frame	MVRETRHLWVGNLPENVREEKIIEHFKr|hglspaqpaclgtaepaaaagasl	.
TALL053	SNRNP70	PSMG4	+/+	+/+	19:49101471	6:3267591	splice-site	splice-site	translocation	downstream	upstream	0	1	0	1891	89	low	.	.	.	CAGGAAAGCCCCGTGGCTATGCCTTCATCGAGTACGAACACGAGCGAGACATGCACT|CCAGGAAGACCAACAAACAGGTGTTTGTCAGCTATAACCTTCAGAACACAGACAGTAACTTCGCATTACTTGTAGAAAACAGGATCAAGGAAGAGATGGAGGCTTTCCCCGAAAAGTTCTAGCTGAGTGGC	in-frame	GKPRGYAFIEYEHERDMH|sRKTNKQVFVSYNLQNTDSNFALLVENRIKEEMEAFPEKF*	.
TALL053	SFMBT2	HNRNPK	-/-	-/-	10:7381799	9:83973399	splice-site	splice-site	translocation	upstream	downstream	0	1	0	38	3397	low	.	.	.	GCACTTTGTCAGCTTCCAATATGCAAGACCCTTCATCTTCACCCTTGGAAAAGTGTCTCGGCTCAGCTAATGGAAATGGAGACCTTGATTCTG|TACCAACACTATAAAGGAAGTGACTTTGACTGCGAGTTGAGGCTGTTGATTCATCAGAGTCTAGCAGGAGGAATTATTGGGGTCAAAGGTGCTAAAATCAAAGAACTTCGAGAG___AACACTCAAACCACCATCAAGCTTTTCCAGGAATGCTGTCCTCATTCC	out-of-frame	TLSASNMQDPSSSPLEKCLGSANGNGDLDS|vptl*	.
TALL053	MAFK	INTS1	+/+	-/-	7:1530898	7:1489682	splice-site	splice-site	inversion	downstream	downstream	1	0	0	117	375	low	.	.	.	GGGGCACTTGTTGTTCTTCGCGAAGTCGGAGCCCGAGCGCCA------GGCGGCGGCCGAGGGGAGCGCGACAGTGAGCGCCGGCGCGAGGACAGCGCGTGCCCGCGAGGAGCCGCCGCGCGCCCGCGCCCTCCGCGCGACGCCAG|GTACCAGCCTCCGAACCTCGCCATCTCTACCCTCTACTGGAAGGCCTGGCCCCTCCTGCTGGTCGTCGCCGCATTCAACCCAGAGAACATCG___GCC	.	.	.
TALL053	LDLR	SMARCA4	+/+	+/+	19:11089615	19:11033290	splice-site	splice-site	duplication	downstream	upstream	0	1	0	277	598	low	.	.	.	GGCTGCGAGCATGGGGCCCTGGGGCTGGAAATTGCGCTGGACCGTCGCCTTGCTCCTCGCCGCGGCGGGGACTGCAG|GACCTGCAAGCGCAGGACCGAGCCCACCGCATCGGGCAGCAGAACGAGGTGCGTGT...CGTGGAGGAGAAGATCCTAGCTGCAGCCAAGTACAAGCTCAACGTGGACCAGAAGGTGATCCAGGCCGGCATGTTCGACCAGAAGTCCTCCAGCCATGAGCGGCGCGCCTTCCTGCAGGCCATCCTGGAGCAC	out-of-frame	MGPWGWKLRWTVALLLAAAGTA|gpasagpspphraaerga	.
TALL053	LDLR	SMARCA4	+/+	+/+	19:11089615	19:11058255	splice-site	splice-site	duplication	downstream	upstream	0	0	0	277	922	low	.	.	inconsistently_clipped(1)	GGCAGAGGCTGCGAGCATGGGGCCCTGGGGCTGGAAATTGCGCTGGACCGTCGCCTTGCTCCTCGCCGCGGCGGGGACTGCAG|CAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCCAGCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAG___GAGCGCATTCGC	out-of-frame	MGPWGWKLRWTVALLLAAAGTA|aavdvssarsssscprerscpsttsssaspwtsrr*	.
TALL054	MON1B	CTD-2300H10.2(65533),MON1B(20005)	+/+	./+	16:77191633	16:77170830	splice-site	intergenic	duplication	downstream	upstream	9	11	7	164	33	high	.	.	duplicates(8),inconsistently_clipped(1)	GCCAGATCCGTTGAAAGGAGTGCAGAGAGGTCTCATTGCGCTCCCGAACAGACCTGACGTAGATCCGAAGTGGCCCGCGCCATCTCAACTATGAGGGGACACCCGTAGGCGGCGGGAGAGGGACGCCGCGAGG...CGGAAGTGTGATGCCACCGCCGCTACGGGGAAGTAATGGTATCCGGCCAATTGAGATTCGGAGTTAAAACAG___GGATGTGCAGATGGAGGTCGGAGGAGACACTGCTGCCCCGGCCCCCGGGGGCGCGGAGGACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGAAGGTGGAGGGGTTCACGCGGTCCCGCCGGATCCCGAAGACGAGGGCCTGGAGGAAACAG|GGATGCTGAGCTGCTGCAGGAAGCTCTTGAACATCAAGTTATGCCAGCAGAAAAAGACATCAGATTGGAAGAATGTGGGTGATGTTTTGCCTGTGGAGGGGGTGGAGGATAGCCTTGGATCCCTTGAAGCCCCTAGGACATGGGTTTAGCCACCCCATGGCACTACAGAG...___GCAGATGAGCTGGTCTCAGAAATACTCAAGTCTCAAAATCTTTGGAACATATGCTTCCATATCAG___CAATTTTCAAGTTTGCCATACTTCTACCCAAAGATTCCACTGGCTTCCTGCCACCATCCTTCAGTCTAAAACTGTATCATGCTGTTCCTGGCATTCTTTGATCAGG...GTCATGTGAGGGTGTCATACACATGCTAGGTGTCATACAACACCTAGCATGATGAATGCTGCAATTTACACCaTCTAAGTTTTTGGTGGCCAGATGAGATTTATCCAAAAGAATACTGAGATAATTGTGGCC	out-of-frame	MEVGGDTAAPAPGGAEDLEDTQFPSEEAREGGGVHAVPPDPEDEGLEET|gmlsccrkllniklcqqkktsdwknvgdvlpvegvedslgsleaprtwv*	.
TALL054	TAL1	TRDC	-/-	+/+	1:47231047	14:22462932	splice-site	splice-site	translocation	upstream	upstream	2	0	22	1098	1678	high	.	.	duplicates(3)	GGATTTCACATTTTATTCCAAATTATGATGTATTCGGGAGCCAGTTGTTGGCTTGGGTGGGCGGACAGCGCCCGGTCGGCGGCTGCTCTGCCCGGAGGCCCGCCTGTGCCTAGGTGTTTGAGGGGTTCGTTGGTGAGTGGGAGGCTCCTCCAGGCTTGAAGCTGAGCAGCGCTCGCCGAGGCCGGCGCCTTCGAGCCGGTAGCTGCGGGCTTCGGTTCCCGCTGCACTCCGGCTTCATCCATTTCTG|GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAACACGACAATAAAACTGTGCACTCCACTGACTTTGAAGTGAAGACAGATTCTACAG___ATCACGTAAAACCAAAGGAAACTGAAAACACAAAGCAACCTTCAAAGAGCTGCC	.	.	.
TALL054	TAL1	TRDC	-/-	+/+	1:47232167	14:22462932	splice-site	splice-site	translocation	upstream	upstream	0	1	0	48	1678	low	.	.	duplicates(1)	GCCGGGCCGCCGCCGCTCAGGACCGGGCCTCAAAATGGCCACACGCGTACCCCCGTAGCGGAAAAAC|GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGG...AGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAAC	.	.	.
TALL054	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	9	7	5	66	68	high	.	.	duplicates(1),mismappers(2),mismatches(6)	GATTTACGCAGTGGTTGGAGAGCGTTGGCAGGAACCCAAGCCTGGTGTGAGCGCGGTGCCCCGCCGTGTGTACCTGCGGGCTCAG___...GCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGCGGGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAG	.	.	.
TALL054	TAL1	AE000661.37	-/-	-/+	1:47231047	14:22461634	splice-site	intron	translocation/5'-5'	upstream	upstream	1	0	15	1098	20	high	.	.	duplicates(2)	GGATTTCACATTTTATTCCAAATTATGATGTATTCGGGAGCCAGTTGTTGGCTTGGGTGGGCGGACAGCGCCCGGTCGGCGGCTGCTCTGCCCGGAGGCCCGCCTGTGCCTAGGTGTTTGAGGGGTTCGTTGGTGAGTGGGAGGCTCCTCCAGGCTTGAAGCTGAGCAGCGCTCGCCGAGGCCGGCGCCTTCGAGCCGGTAGCTGCGGGCTTCGGTTCCCGCTGCACTCCGGCTTCATCCATTTCTG|TTATTTGAAGATAGCCTAAGAATTTAAGTCCCCATGGACACAACATTTATCACAATTCAAAAACTTCAGcGAGG	.	.	.
TALL054	APIP	LMO2	-/-	-/-	11:34915248	11:33869987	intron	splice-site	deletion	upstream	downstream	1	2	0	3	34	high	.	.	duplicates(2)	GGCCATGTCTGGCTGTGATGCTtGGGAGGGAGACTGTTGTTCCCGGAGATGCGGCGCGCAG___...CAAATTAGCAAAGACGACTCTGAAAATAGAATGCTGCATAGGCAAGATTGGATGAGAGAGAGAAGATCTTGGAGACAGGACAG|GAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCCCGAGAGAGGAGGAAGCCCGGAGAGAGACGCACGGTCCCCTCCCCGCCCCTAGGCCGCCGCCCCCTCTCTGCCCTCGGCGGCGAGCAGCGCGCCGCGACCCGGGCCGAAG___GGAGCGCGGTGACTGTCCTTGAG	.	.	.
TALL054	APIP	LMO2	-/-	-/-	11:34916228	11:33869987	splice-site	splice-site	deletion	upstream	downstream	0	1	0	72	34	low	.	.	.	TGGTCTGGGCCATGTCTGGCTGTGATGCTtGGGAGGGAGACTGTTGTTCCCGGAGATGCGGCGCGCAG|GAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCCCGAGAGAGG...CCCCCTCTCTGCCCTCGGCGGCGAGCAGCGCGCCGCGACCCGGGCCGAAG___GGAGCGCGGTGACTGTCCTTGAGCGCGGAGGGGCGAGCTCGCCGGCGGAGCGCCGGAGCAAGCGGAGGCGCAGGAGCGGCGGC	out-of-frame	MSGCDAwEGDCCSRRCGAQ|ekgnetrdrgklsenrpsre	.
TALL054	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	13	42	13	170	87	medium	.	.	duplicates(17),low_entropy(3),mismappers(1),mismatches(2)	G___...CCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTG...CCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAA-GGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTT	.	.	.
TALL054	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	6	6	1	89	356	medium	.	.	.	CCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAG...AACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCgATGCCAGGGCCAAGACTGGGACCAGGAAAG___CCAGGTCTAAAATTCAATGGCCCACCACCGCCACCGC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL054	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	4	3	1	13	68	medium	.	.	low_entropy(1)	GCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCG	.	.	.
TALL054	TAL1	TRDJ2	-/-	+/+	1:47230591	14:22456707	intron	CDS	translocation	upstream	upstream	0	0	58	1000	1282	low	.	.	duplicates(10)	CAGGACCGGGCCTCAAAATGGCCACACGCGTACCCCCGTAGCGGAAAAAC___...GAGGGGTTCGTTGGTGAGTGGGAGGCTCCTCCAGGCTTGAAGCTGAGCAGCGCTCGCCGAGGCCGGCGCCTTCGAGCCGGTAGCTGCGGGCTTCGGTTCCCGCTGCACTCCGGCTTCATCCATTTCTG___CCGTTTTCTAAGTTGCTGGGTTTGAGGTAGGAAGAGAAAATGGAGAGAGGC...|...TCTTTGGAAAGGGAACACAACTCATCGTGGAACCAG___GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGAT...___TGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGAcTCAAAcTCAGTGACATGTTCAGTTCAACACGACAATAAAACTGTGCACTCCACTGACTTTGAAGTGAAGACAGAgTCTACAG	.	.	.
TALL054	AE000661.37	RP1-18D14.7	-/-	+/+	14:22462940	1:47230591	exon	exon	translocation	upstream	upstream	0	0	10	1678	1000	low	.	.	duplicates(2)	TCCAGCTCCTTGAAGCTAGAAATGGCCTACCTGTAGAATCTGTCTTCACTTCAAAGTCAGTGGAGTGCACAGTTTTATTGTCGTGTTGAACTGAACATGTCACTGAATTTGAATCTTCATATTTACCAAGCTTGACAGCATTGTACTTCCCACTGGGAGAGATGACAATAGCAGGATCAAACTCTGTTATCTTCTTGGATGACACGAGATTTATTCTTATATCCTTGGGGTAGAATTCCTTCACCAGACAAGCGACATTTGTTCCATTTTTCATGACAAAAACGGATGGTTTGGTATGAGG...|...GCCTCTCTCCATTTTCTCTTCCTACCTCAAACCCAGCAACTTAGAAAACGGCTGTAGCGGAAAAAAACCCGCTGCTTTGTTCTCCCGCCAAAGGAGCCAAAAGGGACAAACTGCTGCGCT___CTCTAAAGGACACAGGCACACAGGCATACAACTCAGTGCGGACAGGACCACACAGGGTCCAGCCCCACAGAAGGGCAGCAAACAAAC...___CTCTTCACCCCCTTCTAAAATAGAGCCGGTAACTCAAATCCATGGGCTCTACGGCGGCCTGGCAGAAC	.	.	.
TALL054	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	1	5	0	74	13	low	.	.	low_entropy(1)	GGTGCCTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGG___GGACCAGGTTCTTCGAGTCCTGGCCAAAGATGAGAAGCAG	out-of-frame	vpllds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalswqqlwak*	.
TALL054	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	74	11	low	.	.	.	TTTTTCTCACTCCACGGATTCCCCCTTCCCAGGACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAG	out-of-frame	fltprippsqDKVARLAAKALASVSGTEYQVGPTCTTV|caag*	.
TALL054	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	4	0	1	300	45	low	.	.	duplicates(1),low_entropy(2),mismatches(1)	CAGGACTGGCGCAGCTGCCGTTTCAGGCGAGGGGCGCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTC...GGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATG...CACCATGTGCCAGCACCATGCCTCCAAGAGAAAGAGTCATCCCACTGACCTGTGGGGTCTCCTGCCAGACCTGGACCAGCTCACCTGGAGTCAGGGCCTGCTCCACCTCCAAGTCCTGCATGTAGCCTGGAAC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaql	.
TALL054	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	3	1	0	6	11	low	.	.	mismappers(3),mismatches(1)	ATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGC...TCTCATGAGAAAATTTTCTAAaCAAAAAAAAAAATCAAAGCCTCAATTTTGTGCTTTATGTGAATTATAAATGCGGTTTTAAAATACTTACATTAAAACTTGATAAAGTTGCTAAGAATTCC	.	.	.
TALL054	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	2	0	35	11	low	.	.	duplicates(4),mismappers(3)	CTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGC	out-of-frame	QKVLYKEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL054	EEF1A1P13	TRIO	-/-	+/-	5:14652067	5:14505736	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	14	3	low	.	.	low_entropy(2),mismatches(13)	CTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGCCACACGGCTCAcATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCtGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGtTGAGAGCTTCTCAGACTATCCACCT...|...ATGGCACATGGGC	.	.	.
TALL054	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510774	7:22345526	exon	intron	deletion/read-through	upstream	downstream	0	0	4	2187	1	low	.	.	low_entropy(1),mismatches(6)	GAACCATCCAGGCCAAATAAGCgCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCC...|...CTTTTTTTTAATAG	.	.	.
TALL054	FCRL5	HDGF	-/-	-/-	1:157532514	1:156743830	3'UTR	CDS	deletion	upstream	downstream	0	4	0	0	1632	low	.	.	duplicates(17),inconsistently_clipped(1),low_entropy(47),mismappers(4),mismatches(10)	AGAGGAACG...GAAGGAGAGGAA|AAGGAGGCAGCCACCTTGGAGGTTGAGAGGCCCCTTCCTATGGAGGTGGAAAAGAATAGCACCCCCTCTGAGCCCGGCTCTGGCCGGGGaCCTCCCCAAGAGGAAGAAGAaGAGGAGGATGAAGAGGAAGAGGCTACCAAGGAAGATGCTGAGGCCCCAGGCATCAGAGATCATGAGAG___CCTGTAGCCACCAATGTTTCAAGAGGAGCCCCCACCCTGTTCCTGCTGCTGTCTGGGTGCTACTGGGGAAACTGGCCATGGCCTGCAAACTGGGAACCCCTTTCCCACCCCAACCTGCTCTCCTCTTCTACTCACTTTTCCCACTCCAAGCCCAGCCCATGGAGATTGACCTGGATGGGGCAGGCCACCTGGCTCTCACCTCTAGGTCCCCATACTCCTATGATCTGAGTCAGAGCCATGTCTTCTCCCTGGAATGAGTTGAGGCCACTGTGTTCCTTCCGCTTGGAGCTATTTTCCAGGCTTCTGCTGGGGCCTGGGACAACTGCTCCCACCTCCTGACACCCTTCTCCCACTCTCCTAGGCATTCT	.	.	.
TALL054	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	97	111	low	.	.	.	CTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCG...AGCAGATATAACCCAAGAGCATGAAAGAAGTATGGCTTATGGACTG___GTTTCAGCAACATTTGCTGCAAGTTTAGTCACCAGTCCTGCAATTGGAGCTTATCTTGGACGAGTATATGGGGACAGCTTGGTGGTG	in-frame	LVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSA	.
TALL054	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	2	63	111	low	.	.	low_entropy(1)	TGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGC	out-of-frame	GELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL054	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	1	2	0	97	17	low	.	.	.	GGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATT...TGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTGCAGC...___CC	out-of-frame	GVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|maiciqfilm*	.
TALL054	RP11-764K9.1	LINC01410(5031),RP11-262H14.5(19231)	-/-	./-	9:63811055	9:62818517	intron	intergenic	deletion	upstream	downstream	0	0	2	1	11	low	.	.	mismatches(1)	GACACAAGCACCTCtGGCCAtCACCACTATGACTGCCCTGGATCAGACCTGAAGCTAGCACAGCACaGGTCTTGCTCAAGTCCTGCTGCATGCAaTTTCTGACGACTCCCTATGTTCACTCAAGGCCTTTGGT...|...ATGTCCgACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGCAGGGACATGCAGGAAGCTGGAAACCATCATTCTCAGC	.	.	.
TALL054	RTKN	TET3	-/-	+/-	2:74426330	2:74084223	CDS	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	25	1	low	.	.	.	CCTGCCTAACCCCTGCTCGCCTGCCTCAGTGGCCCCAGCCCCAGACTGGACCCACCCCCTGCCCTGGGGGAGACCCCGAACCTTTTCCCTGGATGCTGTCCCCCCAGACCACTCCCCTAGGGCTCGCTCGGTT...|...GCCGGAATT	.	.	.
TALL054	ZFYVE16	ZNF747	+/+	-/+	5:80478336	16:30532630	3'UTR	CDS	translocation/5'-5'	downstream	upstream	0	0	2	10	39	low	.	.	duplicates(1)	TTACCACTTCTAAGAGTGACTGACGACGGGCCAGATGACCCTTGAAGTAGTCATTATGTAGCAATAAATGAAGCCTGAAACAGGTTTTTTTACTTCCACTTTAATCCTTAGAAATTTCTTGGCAACTTCGCAT...|...GATGGACCCATTGGTGCTTGGCCATGCCGGTCTTCAGGCCGAAGCAGCGGCCACACTGCGGGCAGCGGTAGGGCTTCTCGCCAGTGTGAACGCGCAGGTGAGAAGTCAGCGCCGTGCGGCGCATGAAGGCCCG	.	.	.
TALL054	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	4	3	low	.	.	.	CAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACC	out-of-frame	RTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkr	.
TALL054	MED13L	FBXW8	-/-	+/+	12:116277060	12:117010323	splice-site	splice-site	inversion	upstream	upstream	0	2	0	59	26	low	.	.	.	CATGACTGCGGCAGCGAACTGGGTGGCGAACGGGGCGAGCCTGGAGGATTGTCACTCCAACCTCTTTTCGCTG|ATCCTGGTGTATAGCCTGGAAGCAGGACGCCGCCTCTTGAAGCTGGGTAACGTTCTCCGTGACTTCACGTGTGTCAACCTCAGCGACAGCCCTCCCAACCTCATGGTCAGTGGCAACATGGACGGGAG___GGTGAGGATCCACGACCTCCGCAGTGGTAACATCGCCCTGTCGCTCTCCGCCCATCAGCTCAGGGTCTCTGCTGTGCAGATGGATGACTGGAAG	in-frame	MTAAANWVANGASLEDCHSNLFSL|ILVYSLEAGRRLLKLGNVLRDFTCVNLSDSPPNLMVSGNMDGRVRIHDLRSGNIALSLSAHQLRVSAVQMDDW	.
TALL054	SLC38A2	CSNK1G2	-/-	+/+	12:46372509	19:1969508	splice-site	splice-site	translocation	upstream	upstream	1	0	0	266	474	low	.	.	.	GTTACCGCACGCTCGCGCCTTTCCCTTGACACGGCGGACGCCGGAGGATTGGGGCGGCAATTTGTCTTTTCCTTTTTTATTAAAATTATTTTTCCTGCCTGTTGTTGGATTTGGGGAAATTTTTTGTTTGTTTTTTATGATTTGTATTTGACTGAGAGAAACCCACTGAAGACGTCTGCGTGAGAATAGAGACCACCGAG|CTGTGAGCCGTGAGCTTTGAGGCGGTGGGATGTGTCAGCAGAATGTCTCCTGCC	.	.	.
TALL054	CSNK1A1	LEF1	-/-	-/-	5:149550842	4:108048751	splice-site	splice-site	translocation	upstream	downstream	0	1	0	550	851	low	.	.	.	GGGAAATATAAACTGGTACGGAAGATCGGGTCTGGCTCCTTCGGGGACATCTATTTGGCGATCAACATCACCAACGGCGAG|GTGGAAAACGAAGCTCATTCCCAACGTGCAAAGCCAAGGCAGCGACCCCAGGACCTCTTCTGGAGATGGAAGCTTGTTGAAAACCCAGACTGTCTCCACGGCCTGCCCAGTCGACCCCAAAGGAAC	out-of-frame	GKYKLVRKIGSGSFGDIYLAINITNGE|veneahsqrakprqrpqdlfwrwklvenpdclhglpsrpqr	.
TALL054	FOXN3	BCL11B	-/-	-/-	14:89619028	14:99257839	splice-site	splice-site	duplication	upstream	downstream	0	1	0	61	340	low	.	.	.	GCGAGTCCAGCGTCGCCGCAGCCCCCCAATGCGGCCGCGAGAAGCAGCGGGGGGGCAGGCGATCGAAG|CAGAGGCTGACCATGTGGAGGCCGCCATCCTCGAAGAAGACGAGGGTCTGGAGATAGAGGAGCCAAGTGGCCTGGGGCTGATGGTGGGTGGCCCCGACCCTGACCTGCTCACCTGTGGCCAGTGTCAAATGAACTTCCCCTTGGGGGACATCCTGGTTTTTAT	.	.	.
TALL055	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	15	21	8	113	60	high	.	.	duplicates(3),low_entropy(2),mismappers(1),mismatches(7)	CTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...GCCAAG___...CTTGCGGGGC...___...GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCC	.	.	.
TALL055	GFRA4	ATRN	-/-	+/-	20:3663354	20:3647187	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	9	28	0	676	124	high	.	.	duplicates(6),inconsistently_clipped(1),low_entropy(16),mismatches(1)	TCCAGAGGCACTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|TTGAGACAGTCCCAAGAACAGTTTTCCACAGTGAACCTGAGTGTCATTCCTAGTTCTCTCACTGGCTCTACACTGGCCTCCTCCAGCAACCATCAGCTCATCCCTGGACCTGTAATTAAATCAAGTATTTCCTATGCAAAAGTAAAAGGTTAGATGCTGGAACACGGATGGGAGAAACCGTCAAAGAAAGCTTGTGATCATGCAG___ATAAACATAAGGAGGCAGCAAATCCACAAGGAAGAGCATGAAGCCAACGGCAACAGCTTCTAAGTTGGTCAAGAGCCTGCCGCTGCTGCTGAGAGGCGAGGACCCTGGTGTCACTCAGAAACCTCTCTTGGGTCC...GCAGATAAAAAAA	out-of-frame	MVRCLGPALLLLLLL|vetvprtvfhsepechs*	.
TALL055	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	10	12	2	40	39	high	.	.	duplicates(7),low_entropy(1),mismappers(1)	GGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAG...AGGCACGCAAGACTCCTCTGGGCCCGAGTGGGCTGAATCCCATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGACGGTGGGACAGACGGGGATGCGTGCACATGTGTGTGCATGGG	out-of-frame	GDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL055	KMT2A	MLLT1	+/+	-/-	11:118484975	19:6270759	splice-site	splice-site	translocation	downstream	downstream	2	3	3	22	53	high	.	.	duplicates(1)	GGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG___GAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAGGCTTAGGAATCTTGACTTCTGTTCCTATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGGGCATGTAGAG|TGCACCGTCCAGGTGAGGTTAGAGCTGGGGCATCGCGCCCAACTGCGCAAGAAGCCCACCACGGAGGGGTTCACTCACGACTGGATGGTGTTTGTCCGCGGCCCCGAGCAATGTGACATCCAGCACTTCGTGGAGAAGGTGGTCTTCTGGCTGCACGACAGCTTCCCCAAGCCCAGACGCG___TGTGCAAGGAGCCCCCCTACAAAGTAGAGGAGTCGGGGTACGCTGGCTTCATCATGCCCATCGAGGTGCACTTCAAAAACAAG___GAGGAGCCGAGGAAGGTCTGCTTCACCTACGACCTGT	in-frame	GTLNILSTLSNGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVE|CTVQVRLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFWLHDSFPKPRRVCKEPPYKVEESGYAGFIMPIEVHFKNKEEPRKVCFTYDL	.
TALL055	KMT2A	MLLT1	+/+	-/-	11:118484314	19:6270759	splice-site	splice-site	translocation	downstream	downstream	0	2	2	71	53	high	.	.	.	CAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG___GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG|TGCACCGTCCAGGTGAGGTTAGAGCTGGGGCATCGCGCCCAACTGCGCAAGAAGCCCACCAC...AGGGGTTCACTCACGACTGGATGGTGTTTGTCCGCGGCCCCGAGCAATGTGACATCCAGCACTTCGTGGAGAAGGTGGTCTTCTGGCTGCACGACAGCTTCCCCAAGCCCAGACGCG___TGTGCAAGGAGCCCCCCTACAAAGTAGAGGAGTCGGGGTACGCTGGCTTCATCATGCCCATCGAGGTGCACTTCAAAAACA...GCGGGCCGGCGGG___GTGATGGTAATGCCCGAAGGAGCAGACACGGTGTCCAGGCCCAGTCCCGACTACCCCATGTTACCCACAATTCCACTCTCTGCCTTC	in-frame	KQKKVAPRPSIPVKQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFK|CTVQVRLELGHRAQLRKKPT	.
TALL055	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	1	3	0	16	11	high	.	.	.	GCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGG	.	.	.
TALL055	C9orf9	C9orf9	+/.	+/.	9:132883707	9:132884888	intron	intron	duplication	upstream	downstream	2	1	0	3	9	high	.	.	.	.	.	.	.
TALL055	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	17	26	5	104	56	medium	.	.	duplicates(9),low_entropy(1),mismappers(2)	GGAGCCCGCGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGC...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCC	.	.	.
TALL055	CTB-113I20.1(17107),TCF7(15564)	VDAC1	./-	-/-	5:134099147	5:133993018	intergenic	splice-site	deletion/read-through	upstream	downstream	7	8	12	243	1024	medium	.	.	duplicates(4),low_entropy(2),mismappers(2)	CCGGACTGCGCCAGGCTGGTCAGATAAGGAGCATGAGCCAGAGGAGGAAGTGGAAAGGAAGCGGGTGAGAGGGACCCCATGGGCTCCAGCCTCCTCTAGCATCCCCAAACGGCACCTTTAGGGCCCTGAGAAGCAGAGGGGCTTTCTGGGAATGTAAAAGGCTGGTCCCATTGAAGAGCAGTTCTGCAGTGACAGAGGGTAAGCCGGAGCCACCCTCCCCAAGCCAGACCCAACCAGATGCTGGCTTTTTTTGAcGGCCTAAATCACAGTCCACCCAAAGCCCTACTTTTAAGAGTCTGTGCTCGACCTGAAGCACACAGGCTGTGAGCTG|CAGAAGATGGCTGTGCCACCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAGGGCTATG___GATTTGGCTTAATAAAGCTTGATTTGAAAACAAAATCTGAGAATGGATTG___GAATTTACAAGCTCAGGCTCAGCCAACACTGAGACCACCAAAGTGACGGGCAGTCTGGAAACCAAGTACAGATGGACTGAGTACGGCCTGACGTTTACAGAGAAATGGAATACCGACAATACACTAGGCACCGAGATTACTGTGGAAGATCAG___CTTGCACGTGGACTGAAGCTGACCTTCGATTCATCCTTCTCACCTAACACTGG___GAAAAAAAATGCTAAAATCAAGACAGGGTACAAGCGGGAGCACATTAACCTGGGCTGCGACATGGATTTCGACATTGCTGGGCCTTCCATCCGGGGTGCTCTGGTG	.	.	.
TALL055	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	7	7	3	146	393	medium	.	.	duplicates(2),low_entropy(1)	TCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACG...AAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAGCTgATAATATAGAACAgAATGCTCAAGAG___AATGAAAATGAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL055	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	29	393	low	.	.	duplicates(3),read_through(9)	CCAG___GATCCACCTCTGATGTTCAGTGAAGAGGACCGGAAAAGTCTGCTAGAGCAGTACCATCTGGGTCTGGATCAAAAACGCAGAAAATACGTGGTTGGAGAGCTCATCTGGAATTTTGCCGATTTCATGACT...AGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTT	out-of-frame	KTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL055	CD34(42695),PLXNA2(68145)	CD34	./-	-/-	1:207954097	1:207900003	intergenic	splice-site	deletion/read-through	upstream	downstream	6	4	1	27	2042	medium	.	.	duplicates(3),low_entropy(1),mismappers(1),mismatches(1)	GGAGATTTGAAGCATGAGAGGGATTTCAGGCTCCAtTGCTGGCTTGAAGATGGAGGGGACCACCTGTTAAGAAATTTATGTGGCTCTAGGAGTTGAAAGCAGCCTCTAGCTGACAGCCAGCAAGAAAACAGGAATATCAGTCCTACAACCACAAGGAACTGAGTTTTGCCAAGAATAAGAATGGGCTTGAAGTAGAGTCTTCCTCAGAGCTTCCAG|CTTCTGGGTTCATGAGTCTTGACAACAACGGTACTGCTACCCCAGAGTTACCTACCCAGGGAACATTTTCAAATGTTTCTACAAATGTATCCTACCAAGAAACTACAACACCTAGTACCCTTGGAAGTACCAGCCTGCACCCTGTGTCTCAACATGGCAATGAGGCCACAACAAACATCACAG___AAACGACAGTCAAATTCACATCTACCTCTGTGATAACCTCAGTTTATGGAAACACAAACTCTTCTGTCCAGTCACAGACCTCTGTAATCAGCACAGTGTTCAC	.	.	.
TALL055	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	2	0	270	19	medium	.	.	mismappers(1)	GTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATA?TCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCC	.	.	.
TALL055	FMR1	FMR1	+/+	+/+	X:147944931	X:147944036	CDS	intron	duplication	downstream	upstream	1	1	1	108	30	medium	.	.	.	CAAAATTAACCTCAAATATTGCAAAGCCCTTCATTTTGAGTTTAAAATTTTGTTTTATGAAATGGAAAGTGATAATACTCTTTGTGGGCTTATAAATTGGGAAGAGTTTTGGATTACCCCTGAAACGTCTCTGGAAGCTTCTGTTAA-CCTCTTTTTTTTTTTTTTAAAGTCAGACAATGGTATATAACTTTTAACTCTCGATAGGAACTAATTtTGA...GCATCAAATGCTTCTGAAACAGAATCTGACCACAGAGACGAACTCAGTG|ATTGGTCATTAGCTCCAACAGAGGAAGAGAGAGGTAGTAGAGCTGATATTCTGGAGTTGGGGAGAGTTACCTACTCCTAAGGCCAACCTTGAACCTAACCCCTAACCCCTCTCCCAACAGTCTGTTCTTTTTACTCATGAATTTC...GTAATTCTTTATTAATGATCAATTATTGTAATGGGAGTGGGAGGGCAGGTTGTGGACCAAACATCAGGCAAGCATGTATCTGCCTgCAGCTAGATCCAATCCATGACCCACAAGAGACCCTTCCCTGAAG	out-of-frame	ASNASETESDHRDELS|dwslapteeergsradilelgrvtys*	.
TALL055	ZKSCAN1	ZKSCAN1	+/+	+/+	7:100024685	7:100023233	exon	intron	duplication	downstream	upstream	2	1	0	62	22	medium	.	.	.	TGTGATTCCAGCTACGCAGGAGGCTGAGGTGGGAGGATTGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTGTAATCATGCCACTACTCCAACCTGGGCAACACAGCAAGGACCCTGTCTCAAAAGCTACTTACAGAAAAGAATTAGGCTCGGCACGGTAGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACTTGA|ACTCCTGACCGCAGGCGATTGGCCTGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACCACCCCCGGCCTCAGGAGCGTTCTGATAGTGCCTCG...CAGGAATAGTAAAGAAACACATCATAAAACCTCCCAGGACATAAAGGTGAGCACAGACCCTGTTTGGATCAAGTCAGTTCCTGGAGCCTGAATGATGACTGCTGAATCACGGGAAGCCACGGGTCTGTCC	.	.	.
TALL055	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	6	2	1	267	31	low	.	.	duplicates(2)	CGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGtCAG...AAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATGGGCCACCATGTGCCAGCACCATGCCTCCAAGAGAAAGAGTCATCCC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL055	RP11-421L21.3(44106),SCARNA16(1779)	DPH5	./-	-/-	1:101131374	1:101013818	intergenic	splice-site	deletion/read-through	upstream	downstream	1	7	0	61	138	low	.	.	duplicates(1)	GGTATGGTAAGACACTCACTGGTGGGTCTGAAATCACTGCTGCAATTGCTTCCTTTGTCAGGATTAAGCCAAGGCACTGAGCAGGGCTGAGCCTGCAAACTGAAGTCCCTCAGTTCTACGCCTGAGCAAG|GGCCACAACACACAGTGATCTTGTTCTAAGAGCAACAAAGCTGGGAATTCCTTATAGAGTTATTCACAATGCCTCCATAATGAATGCTGTAGGCTGCTGTGGTTTACAG___TTATATAAGTTTG...___...GACACTTGGAGACC...___...AAGTGAAGAAGAACAGACAAAATGGCATGCACACATTATGTTTACTAG___ACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAA___GG...___CAGTTACCGAGGAGACACTTTGTGTTGGCTTAGCCAGGGTTGGAG	.	.	.
TALL055	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	1	68	202	low	.	.	.	CTTGTGTACTGGGGGGTGGAGGGCCCATTTGACTGCAGGAATTGCTCAAGCACATAAGCACCTTGAAGTGTGTTACTAAGATACAAGAAACAGGTTTGCTTTTGCCTATTCCAGCATGGTGTACCTCTCTTAGGATACCTTTTAGCACAGGTAGCAGAATAC...GGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCA	.	.	.
TALL055	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	3	1	47	17	low	.	.	duplicates(1),low_entropy(2)	CTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTAC	.	.	.
TALL055	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	5	0	28	13	low	.	.	mismatches(1)	CATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCC...CCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCAC	.	.	.
TALL055	Y_RNA(10458),AIM1(46468)	AIM1	./.	+/.	6:106465387	6:106519751	intergenic	CDS	deletion/read-through	downstream	upstream	2	1	2	6	58	low	.	.	.	.	.	.	.
TALL055	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69087206	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	2	108	12	low	.	.	.	GCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___AACTTCCTTCACAAGTGGGACCCCCGCAGCCACCTGCAGCCCCTTGCTGGGACCCCAGAGGCCACCTACCAGATGACTGTGGAGCTCCTGTTCAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGTAAATTATAACAAAACCCAATGGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCC	out-of-frame	RGYLSYPSNVFDGLLTVVLLNFLHKWDPRSHLQPLAGTPEATYQMTVELLFs|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL055	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	1	2	1	7	3	low	.	.	.	GTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCTCT	in-frame	LFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEENITTENSC	.
TALL055	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21904258	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	2	0	1	23	7	low	.	.	duplicates(2)	CCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAACACACAGGCAGCTGGATGTTGAGAGGAGCACATCAGCAGGCACCAGCACACTGGCAGGCCAC	out-of-frame	MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg*	.
TALL055	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	18	6	low	.	.	duplicates(1)	CTTTACTAGATTCCTAGTGG___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGC	out-of-frame	llds*wDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagral	.
TALL055	KCNJ12	KCNJ12(20596),PDLIM1P2(4365)	+/+	./+	17:21419513	17:21440468	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	3	0	8	4	low	.	.	duplicates(1)	CGACCCTCTGCCCTGATTATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|CACTGCTGGTACAAACACAGAAGAGCAATTGATCCTCACTGGTGTTCTTCAGGGACAGCTGGTG___CATGTAAACACTGCACAGGCCAGCTTCCCTTCCCCTTCCACCACAAGAAGAAGCCACTTGAGGTCTCACCAGAAGCAGAGCAGATGCCAGCATCATGCTTTCAGTGCAGCCTGCAGACCGTGAGCCAAACAGACCTCTTTTCTTTATAAATTACCCACTCTCA...AACAGAGGCTGAAGCCTGCGTGCTGGGGGCCGAGAGGCCAGAGGAGAATGTGATGAGACATAGAATTGGTAGTGCAGGAAGTTGGAAGATCAAGTACCGTGATGTTGGTGCTGGCTtCTTGTGTTAAACTGCC	.	.	.
TALL055	IL10RB	IL10RB(10951),AP000295.10(1306)	+/+	./+	21:33288261	21:33308185	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	121	4	low	.	.	.	GGGTTTCTTCCTGATCGGAACAAAGCTGGGGAATGGAGTGAGCCTGTCTGTGAGCAAACAACCCATGACG___AAACGGTCCCCTCCTGGATGGTGGCCGTCATCCTCATGGCCTCGGTCTTCATGGTCTGCCTGGCACTCCTCGGCTGCTTCGCCTTGCTGTGGTGCGTTTACAAGAAGACAAAGTACGCCTTCTCCCCTAGGAATTCTCTTCCACAGCACCTGAAAGAG|CTCTCTGGCATCAATTTTTCCACTTCTCAGAAACACTTTGGCCCACAAATTCCCAAAGGAACCTTGTTCTTCATTCTGGAAAACACGATGCCAACATATCAGAATAAAGGACAGATgGGAG	out-of-frame	GFLPDRNKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE|lsginfstsqkhfgpqipkgtlffilentmptyqnkgqmg	.
TALL055	KLRC1(26668),EIF2S3L(24249)	KLRC1	./-	-/-	12:10481353	12:10453269	intergenic	splice-site	deletion/read-through	upstream	downstream	1	0	1	2	3	low	.	.	.	CCTGGTCTGCAAGTTGTGAAGACCATGGGAAAAGCCTAGTATATGGGCTGGAGTGCATCATTCCTCATGGCACAGTCCCTCACAGCTTCCCTTGGCTAAGGGAGTGAGTTTTCCGACCCCTTCCACTTCCC...CCTCAGTTGGAAATGCAGGAATCGCCCACCTTCTGTGTTGATCTTGCTGGGAGCTGCAGACAGGAGCTGTTCCTATTTGGCCATCTTGCCAGCCACCCTCTTGCTTTTGgTTTGAG|CTATAGCAGGCCTTTTTATGAGACTAACCTGGCCTCTCCACTAAAGGATGTGTGACTTTCTGGGGACAGAAG___AGTACAGTCCCTGACATCACACACTGCAGAGATGGATAACCAAGGAGTAATCTACTCAGACCTGAATCTGCC	.	.	.
TALL055	RP11-96H19.1	DUSP16	+/+	-/-	12:46387972	12:12521463	splice-site	splice-site	inversion	downstream	downstream	0	2	0	33	84	low	.	.	.	GCAGTAGTAAGACCAGACCAAATCAAACCAAACCAAGCAAACCACGGGGAATGGAG|GCTTTCAGTCCAGTGTAAAGCTGTTGGAGCGCGGGAGCAAAGGTAAAGAATGATGTAATGCGCTGGCTGCTCCAAAGCATCTTTTGTTGTGGAATGGTTATTCCAGTCATCTCTTTATGAATCAAATGTGAG	.	.	.
TALL055	HERC6	LEF1	+/+	-/-	4:88379120	4:108048751	splice-site	splice-site	inversion	downstream	downstream	1	1	0	73	1586	low	.	.	.	GCCTGTCGCAGCGGGACCGACGGAATCCGGAGCAGGCGACAGGGCGCAGAAGCGGGATGTACTTCTGTTGGGGCGCCGACTCCAGGGAGCTGCAGCGCCGGAGGACGGCGGGCAGCCCCGGGGCTGAGCTACT...GGGAGCGCCACTCTCTGCTGCTGCTGACCAACCACAGGGTCCTCTCGTGCGGAGACAACAGCAGGGGTCAGCTGGGCCGCAGGGGCGCGCAGCGCGGGGAGCTGCCAG|GTGGAAAACGAAGCTCATTCCCAACGTGCAAAGCCAAGGCAGCGACCCCAGGACCTCTTCTGG...GGAAGCTTGTTGAAAACCCAGACTGTCTCCACGGCCTGCCCAGTCGACCCCAAAGGAACACTGACATCAATTTTACCCTGAGGTCACTGCTAGAGACGCTGATCCATAAAGACAATCACTGCCAACCCCTCTT	in-frame	ERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELP|gGKRSSFPTCKAKAATPGPLL	.
TALL055	RBM5	RBM6	+/+	+/+	3:50103166	3:49972059	splice-site	splice-site	duplication	downstream	upstream	0	1	1	155	194	low	.	.	.	GAAAAAGTTGGTGATTCAAGGAAAGCACATTGCAATGCATTATAGCAATCCCAGACCTAAGTTTGAAGATTGGCTTTGTAACAAG|GATCAAGATTATAGGACCGGCCCAAGTGAGGAGAAACCCAGCAGGCTT...TGCAGTTGAAGGAGTATAACACAG___GGAACTCTAATGATCCAGGACAAAGAAGTTACCCTGGAGTATGTATCAAGCCTGGATTTTTGGTACTGCAAACGA___TGTAAGGCAAACATTGGTGGGCACCGATCTTCC	in-frame	KKLVIQGKHIAMHYSNPRPKFEDWLCNK|DQDYRTGPSEEKPSR	.
TALL055	JARID2	DTNBP1	+/+	-/-	6:15487542	6:15637804	splice-site	splice-site	inversion	downstream	downstream	1	0	1	163	83	low	.	.	.	CGATCACCGGGCTGACAGCCGCCGGGAGCAGGCTTCAGCTAACCACCCCGCAGCGGCCCCCTCCACGGGTTCCTCGGCCAAGGGGCTTGCTGCCACCCATCACCACCCCCCTCTGCATCGGTCGGCTCAGGACTTACGGAAACAG|GTATGAGGATACATGGGCTGCACTTCACAGAAGAGCCAAAGACTGTGCAAGTGCTGGAGAG___CTGGTGGATAGCGAGGTGGTCATGCTTTCTGCGCACTGGGAGAAGAAAAAGACAAGCCTCGTGGAGCTGCAAGAGCAGCTCCA	out-of-frame	DHRADSRREQASANHPAAAPSTGSSAKGLAATHHHPPLHRSAQDLRKQ|v*	.
TALL055	TTC3	SLC5A3	+/+	+/+	21:37073364	21:34094863	splice-site	splice-site	duplication	downstream	upstream	0	1	0	153	50	low	.	.	.	CGGCGGCtGCTGCTGCTGCTGCTGCCCGCGTCCGAGGCTCGCGGGCGGCGGGCCCGG|GGTTGGTACAGTAGGCTTCACTAGACTTAGCTGCAACTCAGAATTTCTCCTCCAGCACCTGAGTAAATGCTGATGGTCTTGTGGAGAGTGGATTAAGAGTACGAGCTAAGTTCTCAATCCCAATTAAGAAGCGGAAAATTTAAACTGTCTTCTTCAAAGTTTATCACAAC	.	.	.
TALL055	AL162151.3	TMF1	+/+	-/-	14:98973470	3:69048563	splice-site	splice-site	translocation	downstream	downstream	0	1	0	486	51	low	.	.	.	AAGCGCAGCAGCAGGCATCGTGGGAAGGTGAAGAGCTTCCCTAAGGATGACCCGTCCAAGCCGGTCCACCTCACAGCCTTCCTGGGATACAAGGCTGGC|g|GGAATAAGTTCCCCTGTCAGTGGAGGATGGGAT...GAAAATTTCTTCAGTGCCTTTCTCTCGCCAACTGATGTCCAGACCATTCAGAAGAGTCCAGTGGTATCAAAACCTCCAGCAAAATCACAACGACCAGAAGAAGAAGTGAAAAGCAGCTTACATGAATCCTTG	.	.	.
TALL055	GNAQ	TLE4	-/-	+/+	9:78031100	9:79627374	splice-site	splice-site	inversion	upstream	upstream	0	1	0	306	175	low	.	.	.	GGATCAACGACGAGATCGAGCGGCAGCTCCGCAGGGACAAGCGGGACGCCCGCCGGGAGCTCAAGCTGCTGCTGCTCG|CACCAGCAACAAGTGGTGCAGGCTGTGGAACGGGCCAAGCAGGTGACCATGGCAGAACTGAACGCCATCATTGGG___CAACAACTCCAGGCCCAGCATTTATCACATGGACATGGTCTCCCCGTACCTCTGACTCCACACCCTTCAGGGCTCCAG	out-of-frame	INDEIERQLRRDKRDARRELKLLLL|apatsgagcgtgqagdhgrterhhwattpgpafitwtwsprtsdstpfrap	.
TALL055	CMAHP	ATXN1	-/-	-/-	6:25166290	6:16522688	splice-site	splice-site	deletion	upstream	downstream	0	1	0	83	27	low	.	.	.	GAAGATTTCAACCTCACTCCATTTCAGCTTTCTCTGaGGAGCTGCTCTTGTGCTGTTTGGCCCCTGCCTACTCGGAATGGAACAAAG|TTTTCCAAAGAAATTAGACCATTTTCTTCGTGAGAAAGAAATCGAC...GAGCCCAAGAGCCCTCAGGAGCCCTCCAGAGCCTGTGGGAAGTCTCCATGGTGAAGTATAGGCTGAGGCTACCTGTGAACAGTACGCAGTGAATGTT___ATCTGATGCACAAAGGAAAATAATAATACAAAAC	.	.	.
TALL055	RP11-574K11.31	SMAD1	-/-	+/+	10:73807108	4:145553784	splice-site	splice-site	translocation	upstream	upstream	0	1	0	142	629	low	.	.	.	CCACCCAGAACAAACTCAGGACCTTAGTTCCCAACTTCACCTTCAACTTGGGCTTCTCGGGCAAGTTCTATCATACTG|GAGTTCATCTTTATTATGTTGGAGGGGAGGTGTATGCCGAATGCCTTAGTGACAGTAGCATCTTTGTGCAAAGTCGGAACTGCAACTACCATCATGGATTTCATCCTACTACTGTTTGCAAGATCCCTAGTGGGTGTAGTCTGAAAATTTTTAACAACC	in-frame	TQNKLRTLVPNFTFNLGFSGKFYHT|gVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNN	.
TALL055	NDST2	SMAD1	-/-	+/+	10:73807108	4:145553784	splice-site	splice-site	translocation	upstream	upstream	0	1	0	142	629	low	.	.	.	CCACCCAGAACAAACTCAGGACCTTAGTTCCCAACTTCACCTTCAACTTGGGCTTCTCGGGCAAGTTCTATCATACTG|GAGTTCATCTTTATTATGTTGGAGGGGAGGTGTATGCCGAATGCCTTAGTGACAGTAGCATCTTTGTGCAAAGTCGGAACTGCAACTACCATCATGGATTTCATCCTACTACTGTTTGCAAGATCCCTAGTGGGTGTAGTCTGAAAATTTTTAACAACC	in-frame	TQNKLRTLVPNFTFNLGFSGKFYHT|gVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNN	.
TALL055	NOTCH1	MAP2K2	-/-	-/-	9:136544024	19:4090708	splice-site	splice-site	translocation	upstream	downstream	1	0	0	198	569	low	.	.	.	CAGCCAGCCGGGGAAGAGAGGGCGGGACCGTCCGCCGCCGCCCCGGGACCGTACGCCGCGCGTGTGCGTCCCAGCCCCGCCGGCCAGCGCAGGAGGCCGCCGCCCGGGCGCAGAGGGCAGCCGGTGGGGAGGC...GCCTGGCGCTGCTGCCCGCGCTCGCCGCACGAG___GCCCGCGATGCTCCCAGCCCGGTGAGACCTGCCTGAATGGCGGGAAGTGTGAAGCGGCCAATGGCACGGAGGCCTGCGT|AACCACACCTTCATCAAGC	out-of-frame	LALLPALAARGPRCSQPGETCLNGGKCEAANGTEACv|ttpss	.
TALL055	SCAF11	SOCS2	-/-	+/+	12:45990353	12:93574722	splice-site	splice-site	inversion	upstream	upstream	0	1	0	274	2033	low	.	.	duplicates(1)	CTGGGAACCTACTGTGGGGCCGCGGCCGGACCGAGCGCCTCGACCTCGGTCTGAG|GATGGTACTGGGGAAGTATGACTGTTAATGAAGCCAAAGAGAAATTAAAAGAGGCACCAGAAGGAACTTTCTTGATT...ACTAATCTTCGAATCGAATACCAAGACGGAAAATTCAGATTGGACTCTATCATATGTGTCAAATCCAAGCTTAAACAATTTGACAGTGTGGTTCATCTGATCGACTACTATGTTCAGATGTGCAAGGATAAGC	.	.	.
TALL055	SCAF11	SOCS2	-/-	+/+	12:45990353	12:93572685	splice-site	splice-site	inversion	upstream	upstream	1	0	0	274	1242	low	.	.	.	CAGCGGAGTCAGTGTCCTAGAGACCCTGTAACACCACAAAGCGGACGAAGGAGTCCATGTTGGGGAACTTGGCAGCGGAGTGACTGGGACCTGGGAACCTACTGTGGGGCCGCGGCCGGACCGAGCGCCTCGACCTCGGTCTGAG|GCGATCAGTGGGTGACCGCGGCTGCGAGGGACTTTGTCATCCGTCCTCCAGGATCTGGGGAGAAAGAGCCC	.	.	.
TALL056	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	25	35	19	165	91	high	.	.	duplicates(9),low_entropy(3),mismappers(1)	AATTGGTGGGTCTCACTGACTTCAAGAATGAAGCCGCGGACCCTCCTG___GCGGAATTCTCCACGAGTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG___...GTGAGAGCGGCGCAGGCCCGGGCCCGGCGTGGCGGAGGTGCGCGTGAGCGGCC...___...GCGCCGGCCCCGG...___...CGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACcACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTT	.	.	.
TALL056	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	9	23	6	105	148	high	.	.	duplicates(3),low_entropy(2),mismatches(4)	CTCCCCCTCGGTACTTCTTGGCTGTTTGG___...G___...GGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGC...GTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGC	.	.	.
TALL056	FOCAD	ELAVL2	+/+	-/+	9:20916937	9:23707399	splice-site	intron	deletion/5'-5'	downstream	upstream	9	10	16	59	59	high	.	.	duplicates(6),mismappers(2),mismatches(1)	GTTTCAAGCAGACTTCACTTGCTCTTGTACATGAG___GTTCATATCCAGCTTTCAGAGTGGCACCGTGCAATTTTTCTTCCACAGGCCTGGCTTGCATACATGAATCGAGCTTATCATGCCATTTTACAG___GGAAGACTAGGAGAGCTGGAGTTGCAGTTAAAACATGGAAAAGAAGAACCTGAGGAGGTGCAGTACAAAAAAAGCACAGCCTGGCTCTG___GGTTAGAGACATGCTGACTGATGAGATCACCAAGGCAGCTGCAAA|GAGGGAGCACCCAACAAGTCAGCTGTTACTCTGTTCCAGATCATGTGACTGAAGTACTCCCATTATGAACAGCCATGTCCCATGGGCTCCAGGGCAGGCATCTACACATTCTCCAAGGAGGCTAACTTCCAATGACTGATCAAGCAACCAGCAGCAGGTGACAGGCTCTGCATGAGATCAAGTGTCACAGGAGGCAGTGGAAATGTGGTTAAAG___CTCACCTGATCAAGAAACCAAGAACAGAACACAAATCCAAGACTTACACCTCCAAGTCCTATTGCAGCATTCAAAAGAGTTCTTCACAGAAGGAAGGGAGAGGAGGC	out-of-frame	FKQTSLALVHEVHIQLSEWHRAIFLPQAWLAYMNRAYHAILQGRLGELELQLKHGKEEPEEVQYKKSTAWLWVRDMLTDEITKAAAk|rehptsqlllcsrscd*	.
TALL056	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	8	3	5	24	148	high	.	.	duplicates(1),low_entropy(1),mismatches(2)	G___...CGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGG...ACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCG	.	.	.
TALL056	SAMD12	SAMD12-AS1	-/-	+/-	8:118580715	8:118671939	splice-site	intron	duplication/5'-5'	upstream	downstream	4	8	3	93	22	high	.	.	duplicates(3),mismappers(2)	GAATATTTAGGCGAAAGCGAGAGGAAGGGGGGAGCGCGGGGCAGGAGGAGTACCTCGGCCAAGAAAATTATGCATGCGTTAGGGAAGCTCTGAGAGAATGGCTGTGGAAG___CTCTCCACTGTGGTTTGAATCCACGGGGTATTGATCACCCTGCCCATGCTGAAGGTATTAAACTGCAAATTGAAGGTGAAGGTGTGGAATCTCAATCCATTAAAAATAAAAATTTCCAGAAGGTGCCTGACCAGAAAGGAACTCCCAAGCGACTGCAGGCAGAAGCTGAGACGGCTAAG|ATCTTCTACAATACCAGTTACTTAAATACAATAAATATGTATCAGTGCTGTAATCAAAAAGAGCTATATTTTTAAGTGGCAAGACAACTGCATACATTAGAAAG___GACTTAGGCTGATGGAATATCTTCTATCTCAGATATGATCTTTGGC...___AGCCTTGCAACTTAAAGTGTGTTTTGTGTACTAGCAGCATGACCACCGCATGGGAGCTTCTTAGAAATCGCAGCACTCTGGGAGGCCgAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAG	out-of-frame	MAVEALHCGLNPRGIDHPAHAEGIKLQIEGEGVESQSIKNKNFQKVPDQKGTPKRLQAEAETAK|ifyntsylntinmyqccnqkelyf*	.
TALL056	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	10	8	3	128	412	medium	.	.	duplicates(3),low_entropy(1)	CCGGCGGCTGTTGTCGGGCCTCCAGCGGGCGGGGCCGTTGGCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAG...___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL056	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	30	412	low	.	.	duplicates(1),read_through(11)	GAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAGGTTATTTTAAAATGTTGAGATTTAACTTCAAAGGATGTCTCATTAGTCCTTAT	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL056	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	4	2	5	70	36	medium	.	.	duplicates(2),mismappers(5),mismatches(1)	GACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGG	.	.	.
TALL056	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	6	37	36	medium	.	.	mismappers(6),mismatches(2)	ATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACT...GGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTAT...GGA___GTATACCTTTACAGGAATTTATACTTTTGAATCACTTATTAAAATACTTGCAAtGGGCTTTTGTTTAGAAGATTTCACATTTTTACGGGATCCATGGAATTGGTTGGATTTCACAGTCATTACTTTTGC___G	.	.	.
TALL056	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	7	0	0	27	36	low	.	.	low_entropy(2),mismappers(14),mismatches(3)	TAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG___...CCAACACCAAG___GGATTGTAGCAACCAAACTGCTGAAGACTGGCGTGGTCTGTCTGTCTTCACCCTCCAGAGGATAGAGGACCTG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___AC	.	.	.
TALL056	KLRB1	DDX12P(1504),RP11-726G1.1(17819)	-/-	./-	12:9598046	12:9449733	splice-site	intergenic	deletion/read-through	upstream	downstream	1	1	1	406	3	medium	.	.	duplicates(1)	GCTGATTGTTCCACCAAAGAATCCAGCCTGCTGCTTATTCGAGATAAGGATGAATTG___ATACACACACAGAACCTGATACGTGACAAAGCAATTCTGTTTTGGATTGGATTAAATTTTTCATTATCAGAAAAGAACTGGAAGTGGATAAACGGCTCTTTTTTAAATTCTAATGA|GTCTGCACTGCCTTTACGAGCTGTAACACTCACTGTAAATGTCTGCAGCTTCACTCCTGAAGCTAGTGAGAGCACGAACCCACCGGGGTGAACGAGCAACTCCAGTACACGCCGTCTTAAAAGCTGTAACgCTCAGGCGAAGGTCTGCAGCTTCACTCCTGAGCCAGCAAGACCACAAACCCACCAGAAGGAAAAAACTCCGAACCTATTGGAACATCtGAGGGAACAAACTCCAGACACACCGCCTTTATAAAAC	out-of-frame	ADCSTKESSLLLIRDKDELIHTQNLIRDKAILFWIGLNFSLSEKNWKWINGSFLNSNe|salplravtltvnvcsftpeasestnppg*	.
TALL056	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	12	0	41	27	low	.	.	low_entropy(1)	CTGACTGTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGAC	.	.	.
TALL056	ZNF445	LINC00694	-/-	-/-	3:44455121	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	53	27	low	.	.	.	GGGAACTCTGTCGCTGGTGGCTGAGGCCTGACGTTCTCTCCAAGGCACAGATCCTAGAGCTGCTGGTGCTGGAACAGTTCCTGAGCATCCTGCCTGGGGAGCTCCGGGTTTGGGTGCAGCTTCATAACCCTGAGAGTGGCGAGGAGGCTGTGGCCTTGCTGGAGGAGCTGCAGAGGGACCTTGATGGGACATCCTGGAGG|GTATGTCTAGAGGTCAGTTTGGACAGGG	out-of-frame	ELCRWWLRPDVLSKAQILELLVLEQFLSILPGELRVWVQLHNPESGEEAVALLEELQRDLDGTSWR|vclevsldr	.
TALL056	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	6	1	17	14	low	.	.	duplicates(2),low_entropy(1),mismappers(1)	CCAGGTCAATGAAGTGTACGGGCTGGTGGATGGGCTGGTCACCTTCTACCTCCCGCTACTGATCATGTGCATCACCTACTACCGCATCTTCAAGGTCGCCCGGGATCAGGCCAAGAGGATCAATCACATTAGC...GGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCC	out-of-frame	ANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL056	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	4	1	16	13	low	.	.	duplicates(3)	GGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAG...GGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACgGAATCAGGtGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAA	.	.	.
TALL056	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	4	134	615	low	.	.	duplicates(3),mismatches(1)	GGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGAT...GTTGCCTGAGAAAATGCGGCCAGCATCCTGGGGAGCgCCCATTTCCTGGGAACAAGCTGACCCTTTTGCG___TCCTTAAAAAAAGTCGGCCAAGATTCCATAGTGCTGCTGATCTGCATTACAGTGTTTCTCTCC	out-of-frame	GELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL056	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	2	182	615	low	.	.	mismatches(1)	GAAATTCTTAATAAACCTATGGAAACACTTAAACTTGCTATTCCATCAGGGATCTATACTCTTCAGAATAATTTACTGTATGTGGCACTATCAAATCTAGATGCAGCTACTTATCAG___GTCACGTATCAGTTA...GTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGC	in-frame	VYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMN	.
TALL056	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	170	615	low	.	.	mismatches(1)	GGAAACAGCAGAAAAAGCATTACATAAAAG___TGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGT	out-of-frame	gnsrksit*kWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL056	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606353	intergenic	intron	deletion/read-through	downstream	upstream	2	4	1	30	49	low	.	.	.	.	.	.	.
TALL056	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	6	0	17	259	low	.	.	mismappers(1)	GCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCACACTGCCCTGCACAGCA...___GGGTTCTCCAGGACAAGGACCTCTTCTCTGTCTTCGCTGATCCCAATATGCTTGATAC___GTTGGTGCCTGCTCACCCAGCCCTCGTCAATGCCATTGcCC	.	.	.
TALL056	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74458896	splice-site	splice-site	deletion/read-through	upstream	downstream	0	5	0	17	240	low	.	.	.	AAAGGTTGCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|GGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCACCTGGCGGTGAAGCTGGCTGACCAGCCACTTACTCCAAAGTCTATTCTTCGGTTGCCAGAGACAGAACTGGGAGAATACTCGCTAGGGGGCTATAGTATTTCATTTCTGAAGCAGCTTATTGCTGGCAAACTCCAGGAGTCTGTTCCAGACCCTGAGCTGATTG___ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTC	.	.	.
TALL056	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74452378	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	17	257	low	.	.	.	CGAGTACAGCCATGGAGACCACT|AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCACACTGCCCTGCACAGCAGCTCCTCTTACAGGGAGGCG___GGGTTCTCCAGGACAAGGACCTCTTCTCTGTCTTCGCTGATCCCAATATGCTTGATAC___GTGGCTTCCTGTTTGAAGGGCTCTCAGATGATGAGGATGACTTTCACCCA___AACAC	.	.	.
TALL056	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	2	1	40	5	low	.	.	.	GTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___GTACCCTGACATGCCCACTGCTGCTGATGTTGTGAATGCTTTAGATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAAC...AAAAGATCTAAAAGCATCACCTTTTGCTTTGTCTGCTGGTGCTTAAG___TTTGAATATGTCATCCCACTGCCTTTGGCCTTCATAGCTTCTG___GCCCAGGAAAGGGAAGAATTACATGAAGACACATGGAGAGGGG	out-of-frame	FSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRTQQLASIVA|gctgesklfwrcpka*	.
TALL056	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	2	0	25	16	low	.	.	duplicates(2),mismappers(2)	GCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CGCTGTTGGGGTCCTTGACCGGATGCGACCAGCATGGGGTACTTGTGGAGGTTTGCGGTGTAAGAAGGCTTCAGGGAATGGTCAGTGGAATCTGAAGCTGGGGGTTAGCCACTGAGGGCTTCT	out-of-frame	PDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL056	LINC01226	LINC01225	+/.	+/.	1:31523622	1:31524541	exon	intron	duplication	upstream	downstream	2	0	3	64	24	low	.	.	.	.	.	.	.
TALL056	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	0	15	17	low	.	.	low_entropy(1),mismappers(1)	AACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAG	.	.	.
TALL056	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	3	0	37	13	low	.	.	low_entropy(1)	CCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTT...CCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCG	.	.	.
TALL056	HTRA1(25982),DMBT1(19775)	DMBT1	./+	+/+	10:122540890	10:122565967	intergenic	splice-site	deletion/read-through	downstream	upstream	3	1	0	11	43	low	.	.	low_entropy(1)	CTTACTCTGTGCCACTCTCTCCAGCAAGGGGACTCTCCTAGGTGCCCTCATGGTCTCTTTGGTTACCTGATTGCACTGTGTTGTTATTACCTGCTTGCCTAGGTCTCCCCACCTGCATCGTAAGCTCTTCAGGGACCTTATTTTATTCATGCTGACTCTCAATGCCTGGGCCAAGACCTGACATGGA|GTGGGTGGATCCCAAGGACTACAGACTACa___CTTCACTGATTCCCTCGGAGGTGCCCTTGGATaCAACTGTAGCAGAAG___GTTCTCCATTTCCCTCGGAGTtGACCCTGGAGTCAACTGTAGCAGAAG___GTTCTCCGATTTCCTTGGAGTCAACCCTGGAGTCAACtGTAGCAGAAG___GTTCTCTGATTCCCTCAGAGTCAAC	.	.	.
TALL056	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	0	0	548	49	low	.	.	duplicates(1),mismappers(1)	GAATTACCAGATCTCCGTCAAGTGCAGTAACCAGTTCAAGTTGGAAGTGTGTCTTTTGAATGCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGG...GTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGG	.	.	.
TALL056	METTL13	DNM3	+/+	+/+	1:171813968	1:171841815	exon	CDS	deletion/read-through	downstream	upstream	0	0	4	7	0	low	.	.	mismappers(1)	CCTGTGTTGTGAACACCACAAAGCCATGATCGCTGGCCTTGCCCTGCTGAGAAACCCAGAGCTACTCCTAG___...CTTTTCTACAGAAGGTTAAAAGCATCTTGACTCCTGAAG___GGTCACCAGATCCTCCTCCTCCTGCAGGCTCACCATGGCTTCAAAAGAATTCAGTGTTCTGCAAGACTCTTCAGTCCTACTACTGCTCTCTATT...|...CAG___GGACTTTCTCCCTCGAGGGTCGGGCATTGTAACAAGACGACCTCTTGTGCTGCAGCTTGTTACTTCTAAAGCAG___AATATGCCGAGTTTCTACATTGCAAAGGAAAGAAATTTACAGATTTTG	.	.	.
TALL056	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	0	100	5	low	.	.	.	CTGAAATGCCCTCTTCACACCGTCCTGAAACTGACGCCTGTCGCTTATG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGACCAATTAACC	out-of-frame	LKCPLHTVLKLTPVAYGCKEGT*PAHETQ*CHPASQPRTHQKASHQQL*GACGLHLGRPAQLPAPGGAHAAAWT|rvkewnswkgp*	.
TALL056	DTX2P1-UPK3BP1-PMS2P11	CCDC146	+/+	+/+	7:77043596	7:77198317	exon	intron	deletion/read-through	downstream	upstream	0	0	4	5	0	low	.	.	.	AAAACTTCGAAGGCTTAA___TCTCTTTCAGCTCTGAAACATCACACATCTAAGATTCAAGAGTTTGCCGACCTAACTCGGGTTGAAACTTTTGGCTTTCGGGGGAAAGCTCTGAGCTCACTTTGTGCACTGAG___TG...|...G___CACACAAGAGTCAGAGGTCCAACTGCTACAGAATGCCAAACGTTTCACTGAGCAAATACAACAGCAGCAGTTTCACCTGCAGCAAGCTGATAATTTTCCAGAAGCATTCTCCACGG	.	.	.
TALL056	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31583149	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	92	10	low	.	.	.	GGAG___CAGTTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGGGTGAGAG...CACAGCAG___CTGTGGCATCCGATCGTGTCTCAATCCATTCTCTGGGACACATGACGCCTGTCCTGTCGCCCCAGAACCTGCTGTCTTGTGACACCCACCAGCAGCAGGGCTGCCGCGGTGGGCGTCTC	.	.	.
TALL056	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31584678	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	92	7	low	.	.	.	GCTGACTGCCGGTGCATGTTGGAAATGGGCCACAGGGCTGGGCATGATATGAGCTGCCTGGACATTGGAGGGGGCTTCCCCGGAATGGAGGGCTCCGGGCCCAAGTTTGAGGAG___GGATAATTCTAATGCCTAC...CCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|ACAGTGCTGAACCCAGGGGAGGTGCTTCCCACAGCCTTCGAGGCCTCTGAGAAGTGGCCCAACC	.	.	.
TALL056	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31579204	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	92	4	low	.	.	.	CTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|GATGTATGCATGGAGGTCGTATCTATCCAGTCTTGGGAACGTACTGGGACAACTGTAACCGTTG___CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGC	.	.	.
TALL056	DDTL	AP000350.6(2383),AP000350.7(8041)	+/+	./-	22:23972217	22:23931957	3'UTR	intergenic	inversion	downstream	downstream	0	4	0	22	11	low	.	.	.	AGATTgTCTACCTCATGGGGATAGCATGTCTTGTCTGAGCAAAGGGAGAG|TGCACCAAACTTTGGGTAACAAACAgTTTAAACTTGTTTTTTTAGACATTCAGTAAGCCCTTTCTCCCCCCTCCCCAAACCGTTTGATTACAAAGAAGCACAATGGGTTAACTGTGGCAAAACATAAGAAATAAGGCAGGGGAGGCAGGTGCAGCCTTGACAACATAAGAATATCCAAACAATGTTGTCAATATCAAAAG	.	.	.
TALL056	ACP1	SNTG2	+/+	+/+	2:277951	2:1068013	3'UTR	intron	deletion	downstream	upstream	0	0	3	667	0	low	.	.	.	CACCCATAGTGCACACTTGTATATTGAAAAGATAGGGAAGAGAGAAACATTTATGGAATCAGTCGTTGGCACCTTCAATACTTCATGATTTTTGTCGAGTTTACTTCATGAGGAGGTCAGCCCATTGGCTCCC...|...TCCTTCAGGAA	.	.	.
TALL056	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	1	2	0	214	61	low	.	.	duplicates(1),mismappers(1),mismatches(1)	GCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACT...CCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATGGGCCACCATGTGCCAGCACCATGC	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdh	.
TALL056	EEF1A1P6	DNAH11	-/-	+/-	7:22510764	7:21820426	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	3048	1	low	.	.	mismatches(7)	CTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTtGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCtGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAAT...GGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTG...|...ATGTAATCAAAG	.	.	.
TALL056	PMS2P9	CCDC146	+/+	+/+	7:77043596	7:77198317	exon	intron	deletion/read-through	downstream	upstream	0	0	3	5	0	low	.	.	.	AAAACTTCGAAGGCTTAA___TCTCTTTCAGCTCTGAAACATCACACATCTAAGATTCAAGAGTTTGCCGACCTAACTCGGGTTGAAACTTTTGGCTTTCGGGGGAAAGCTCTGAGCTCACTTTGTGCACTGAG___TG...|...G___CACACAAGAGTCAGAGGTCCAACTGCTACAGAATGCCAAACGTTTCACTGAGCAAATACAACAGCAGCAGTTTCACCTGCAGCAAGCTGATAATTTTCCAGAAGCATTCTCCACGG	.	.	.
TALL056	PTGER4(3028),TTC33(17712)	TTC33	./.	-/.	5:40696763	5:40740484	intergenic	intron	deletion/read-through	downstream	upstream	0	2	0	10	8	low	.	.	mismappers(1)	.	.	.	.
TALL056	PPARD	FANCE	+/+	+/+	6:35411217	6:35455747	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	26	37	low	.	.	mismappers(1),mismatches(1)	GGAAGAGGAGGAGAAAGAGGAAGTGGCAGAGGCAGAAGGAGCCCCAGAGCTCAATGGGGGACCACAGCATGCACTTCCTTCCAGCAGCTACACAG|GAAACCACTGTTGCTGCGATTGCCCCGGATATGCCAGAGGAACCTGATGTCCCTGCTGATGGCCGTTCGGCCATCGCTGCCGGAAAGTGGGCTCCTCTCTGTGCTGCAGATTGCCCAGCAGGACCTAGCCCCTGACCCcGATGCCTGGCTCCGTGCCCTGGGGGAATTGCTGCGAAGGGATTTGGGGGTGGGGACCTCCATGGAGGGAGCTTCTCCACTGTCTGAAAGATGCCAGAGACAGCTCCAAAGTCTATGTAGGGGGCTGGGCCTGGGGGGCAGGAGGTTGAAATCCC...GAGGAGAACAGGGACTCCCAGCAGCCTGGGAAACGCAGAAAGGACTCAGAGGAAGAGGCTGCCAGTCCTGAGGGGAAGAGGGTCCCCAAAAGATTACGGTGTTGGGAAGAGGAAGAAGATCATGAGAAGGAGA	out-of-frame	EEEEKEEVAEAEGAPELNGGPQHALPSSSYT|gnhcccdcpgyargt*	.
TALL056	WDR27	RP1-137D17.2(3622),WDR27(26521)	-/-	./-	6:169559927	6:169430691	exon	intergenic	deletion/read-through	upstream	downstream	0	0	2	0	1	low	.	.	.	CGCGGCTTGTGGGGCCGAGGACAGACAC___GCTTACGTGTATGAAATGGGCTCAAGCACGTTTTCTCACCGGCTGGCTGGGCACACAGACACTGTCACTGGAGTGGCCTTCAACCCATCAGCGCCCCAG___G...|...AGAATGAGCTGGGATCTGCCCTGACAAGTGGAGCCTCGTTTGAAAGTGTCG___GTAACAGGCTCTGTGTCTGAACCAAAGTTTCCCTTGCAACCTGGTGTGGCTGCATGATGGAGTTTGGGCCGTGACATATGGT	.	.	.
TALL056	RNF216	TNRC18	-/-	-/-	7:5649032	7:5388363	intron	CDS	deletion/read-through	upstream	downstream	0	0	2	1	126	low	.	.	mismappers(1),mismatches(1)	CTGACAGCATGT...|...CCAACAGGCCGCCAAGCTCTTCGGCCTGGAGCCCGGGCGCCCCCCGCCCACCGGCCCTGAGCATAAATGGAAACCCTTCGAGCTGGGCAACTTCGCCGCCACGCAGATGGCCGTGCTGGCCGCGCAGCACCAC	.	.	.
TALL056	USP9Y	RGS18(335),RP11-142L4.3(60558)	+/+	./+	Y:12779644	1:192186150	CDS	intergenic	translocation	downstream	upstream	0	0	2	40	24	low	.	.	.	GTTTGCCTGGGGTG___ATAATGTCAGTGCATCCCAGATACATCTCTTTCCTTTGGCAAGTTGCAGACTTAGGTAGCAACCTGAATATGCCACCTCTTAGAGATGGAGCAAGAGTACTTATGAAACTTATGCCACC...|...GGTACCACAAATATGTATCATGTAGCTTTTCCGTATGTAATACTGTCCAAAATCATCCAATCTCTTCATTAAATTATGAAATATTCAATGAGATGCTTCAAAAACATACCAGGATTTCTTCATAAAATTAA	.	.	.
TALL056	EEF1A1P19	NIM1K	-/-	+/-	5:43495499	5:43262050	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	418	1	low	.	.	mismatches(2)	TTACAACgGAAGTAAAATCTGTCGAAATGCACCATGAAGtTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTT...|...GAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAAC	.	.	.
TALL056	PRKAR1B	EPS15L1	-/-	-/-	7:579256	19:16355851	splice-site	splice-site	translocation	upstream	downstream	0	1	1	339	68	low	.	.	.	GAAAATTGTGGTCCAGGGAGAGCCTGGGGACGACTTTTACATCATCACGGAG|TTTGGCAATGAGGAGCAGCAGCTGGCGTGGGCCAAGCGGGAGAGCGAGAAGGCGGAACAGGAGAGGCTGGCGCGGCTGCGGCGGCAGGAGCAGGAGGACCTGGAACTGGCCATCGCGCTCAGCAAGGCTGACATGCCTGCCGCCTAGGCGAGGGCCGTGTGTAGGCGGGACAGGGCACGGGCGGGTTCCAGAGAGGGGGCAGTGCAGATGTCTATATATACACACACACACCGTCGCCACCGTACTCCAAGGACCGGGACTCGGG	in-frame	KIVVQGEPGDDFYIITE|FGNEEQQLAWAKRESEKAEQERLARLRRQEQEDLELAIALSKADMPAA*	.
TALL056	ZNF292	SYNCRIP	+/+	-/-	6:87155759	6:85641451	splice-site	splice-site	inversion	downstream	downstream	1	0	1	62	412	low	.	.	.	GTTGCGGCGAAGGCGGCTGCGTCGCGGAGCTGCAGCGCCTGGGCGAGCGGCTCCAGGAGCTGGAGCTACAGCTGCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACTACTGTCAGCAGCTGTGCCAG|ATCTCTGGAAACATGGCTACAGAACATGTTAATGGAAATGGTACTGAAGAGCCCATGGATACTACTTCTGCAGTTATCCATTCAGAAAATTTTCAGACATTGCTTGATGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAG___GGCTAGTTGCACATAGTGATTTAGATGAAAG	in-frame	CGEGGCVAELQRLGERLQELELQLRESRVPAVEAATDYCQQLCQ|isgnMATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDE	.
TALL056	TNRC6B	EDEM1	+/+	+/+	22:40178140	3:5195209	splice-site	splice-site	translocation	downstream	upstream	2	0	0	38	328	low	.	.	.	GCAAGAGGGAGAGTGTGTGAGAGAGAGTTAGTTCAAGCCAAAATGGCCGACAGAGTCTCTGCTGGTTTCTGAATATTTAAAATACAAAAAAACAGATAGACAAAAAGAATTCATTTTTTGGACCTTTTTTCATTTCCATTTCTACCTTGTATGCCTCAATTTGCTGGATTTAAGCACTGCTGCACTTTATGAG|TTCAAATCTGAACATCAATGATGTACTAGGGAACTACTCATTG	in-frame	Ms|SNLNINDVLGNYS	.
TALL056	HMGB2	ING2	-/-	+/+	4:173334272	4:183510282	splice-site	splice-site	inversion	upstream	upstream	0	2	0	4032	135	low	.	.	.	CGTCTCCGTTGGGTCCGGCCGCTCTGCGGGACTCTGAGGAAAAGCTCGCACCAG|AAACGTTAAAGGAAATTGATGATGTCTACGAAAAATATAAGAAAGAAGATGATTTAAACCAGAAGAAACGTCTACAGCAGCTTCTCCAGAGAGCACTAATTAATAGTCAAGAATTGGGAGATGAAAAAATACAGATTGTTACACAAATGCTCGAATTGGTGGAAAATCGGGCAAGAC	.	.	.
TALL056	PAIP2	MATR3	+/+	+/+	5:139341980	5:139307239	splice-site	splice-site	duplication	downstream	upstream	0	2	0	1266	903	low	.	.	.	CGGCGCTGCCTGTGGAGATCCGCGGAGGCCGACAGGATTCGTTGGCTGCCGTCCCCGCTGCTGTGCATTGG|AGTTGTCTGCTGGTTCTCAGCTTGAAGAAGATTCTGCAGTCCTTATTGATCCTTTTTCTTGGCGTTACCATTTTT[t]GAAGCAAAGTTAACCTAGCTTTCTAGTTTGAGCTTTCTTTTTGGCCGTCTTTAAAAAAAaTTTTTTTTTTAATCTATAAAATAGACAAGAGCTAGTTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTCAGTAGGG	.	.	.
TALL056	PAIP2	MATR3	+/+	+/+	5:139341980	5:139307239	splice-site	splice-site	duplication	downstream	upstream	0	2	0	1266	903	low	.	.	.	CGGCGCTGCCTGTGGAGATCCGCGGAGGCCGACAGGATTCGTTGGCTGCCGTCCCCGCTGCTGTGCATTGG|AGTTGTCTGCTGGTTCTCAGCTTGAAGAAGATTCTGCAGTCCTTATTGATCCTTTTTCTTGGCGTTACCATTTTT[t]GAAGCAAAGTTAACCTAGCTTTCTAGTTTGAGCTTTCTTTTTGGCCGTCTTTAAAAAAAaTTTTTTTTTTAATCTATAAAATAGACAAGAGCTAGTTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTCAGTAGGG	.	.	.
TALL056	YIPF4	SPAST	+/+	+/+	2:32278234	2:32136563	splice-site	splice-site	duplication	downstream	upstream	0	1	0	138	85	low	.	.	duplicates(1)	GGGGACTTCACCTTTGTCTCCTCAGCAGACGCGGAAG|GTGGGAGAAGGAGAGAAATTGGTGAGGGCTCTTTTTGCTGTGGCTCGAGAACTTCAACCTTCTATAATTTTTATAG___ATGAAGTTGATAGCCTTTTGTGTGAAAGAAGAGAAGGGGAGCACGATGCTAGTAGACGCCTAAAAACTGAATTTCTAATAGAATTTGATGGT___GTACAGTCTGCTGGAGATGACAGAGTACTTGTA	out-of-frame	GDFTFVSSADAE|ggrrreigegsfccgsrtstfynfyr*	.
TALL056	TNFAIP8L1	MYDGF	+/+	-/-	19:4639629	19:4658084	splice-site	splice-site	inversion	downstream	downstream	0	1	0	35	381	low	.	.	.	CCGGCGCTGCTCCCACCGCCGCGGCAACGGCCCCGGCCCACGGAGGCGGCTGGACGGACCCCCGACGGTTGGACGTACGGACTCTGCTTCGAGAGTAG|TGGCTCACAGGCCCGGGGCATTCAAAGCTGAGCTG...ATCGCGCACTGAGCTGTGACCAGCAGCCCTGTTGCGGGTGGCACCTTCTCATCTCCGGTGAAGCTGAAGGGGCCTGTGTCCCTGAAAGGGCCAGCACATCACTGGTTTTCTAGGAGGGACTCTTAAGTTTTCT	.	.	.
TALL056	ZNF721	RBX1	-/-	+/+	4:499056	22:40964047	splice-site	splice-site	translocation	upstream	upstream	0	1	0	21	888	low	.	.	.	AGCGGGCGGTGTTCCCGGCTCCGTGGGGCCGTCTTCCCGGCGAGTCCGCGACGGTCGCCGCCCACGGCGAG|GCATAGAATGTCAAGCTAACCAGGCGTCCGCTACTTCAGAAGAGTGTACTGTCGCATGGG...TCCATCAAGCTTAATTGTTTTGTTATTCATTTAATGACTTTCCCTGCTGTTACCTAATTACAAATTGGATGGAACTGTGTTTTTTTCTGCTTTGTTTTTTCAGTTTGCTGTTTCTGTAGCCATATTGTAT	.	.	.
TALL056	CBL	PTBP2	+/+	+/+	11:119274024	1:96806419	splice-site	splice-site	translocation	downstream	upstream	1	0	0	127	171	low	.	.	duplicates(1)	AGCAGATGCTGCGGAATTTTGGAGAAAAGCTTTTGGGGAAAA___GACAATAGTCCCTTGGAAGAGCTTTCGACAGGCTCTACATGAAGTGCATCCCATCAGTTCTGGGCTGGAGGCCATGGCTCTGAAATCCACTATTGATCTGACCTGCAATGATTATATTTCGGTTTTTGAATTTGACATCTTTACCCGACTCTTTCAG|ATGGTTACGCCCCAAAGTCTGTTTACCC	in-frame	ADAAEFWRKAFGEKTIVPWKSFRQALHEVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTRLFQ|MVTPQSLFT	.
TALL056	LRMP	STK38L	+/+	+/+	12:25052956	12:27297710	splice-site	splice-site	deletion	downstream	upstream	0	1	0	216	90	low	.	.	.	CTTCAAACTATAAATACTGAATTATCGAACACTTGCCAGGCACTTCAGCAGAAGACAAGGAAACTGAAGA|TTaCCGTTACTATGGCAATGACGGCAGGGACTACAACAACCTTTCCTATGAGCAACCATACCCGGGAAAGAGTGACTGTAGCCAAGCTCACATTGGAGAATTTTTATAGCAACCTAATTTTACAGCATGAAGAGAGAGAAACCAG___GCAGAAG	.	.	.
TALL056	STK38L	LRMP	+/+	+/+	12:27244332	12:25096910	splice-site	splice-site	duplication	downstream	upstream	0	1	0	59	318	low	.	.	.	GGAGCTGACGGGCGCCCGGCCGGCTGCGGTCCGTGCGGAGGCTGAGCCGGCCGCGGGCGCGACCGGAGGCAG|TCTTTAACACCTCTGTGTGAAGATGACAACCAGGCACAGGAAATCATTAAGAAGCTGGAGAAGAGTATAAAGTTTCTTAGCCAGTGTGCAGCACGAGTGGCCAGTAGGGCTGAGATGTTGGGAGCCATCAATCAG___GAAAGCCG	.	.	.
TALL056	TTYH3	PDGFA	+/+	-/-	7:2632278	7:512455	splice-site	splice-site	inversion	downstream	downstream	0	1	0	144	28	low	.	.	.	CCTGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|GGAGTGAGGATTCTTTGGACACCAGCCTGAGAGCTCACGGGGTCCATGCC...AGAGAAGCATCG___AGGAAGCTGTCCCCGCTGTCTGCAAGACCAGGACGGTCATTTACGAGATTCCTCGGAGTCAGGTCGACCCCACGTCCGCCAACTTCCTGATCTGGCCCCCGTGCGTGGAGGTGAAACGCTG	out-of-frame	LHRLPHFDLSWEATSSQFRPEDTDYQQ|gvrilwtpa*	.
TALL056	TTYH3	PDGFA	+/+	-/-	7:2632278	7:501242	splice-site	splice-site	inversion	downstream	downstream	0	0	0	144	42	low	.	.	inconsistently_clipped(1)	CTCCTGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|GTGGCCAAGGTGGAATACGTCAGGAAGAAGCCAAAATTAAAAGAAGTCCAGGTGAGGTTAGAGGAGCATTTGGAGTGCGCCTGCGCGACCACAAGCCTGAATCCGGATTATCGGGAAGAGGAC	in-frame	LLHRLPHFDLSWEATSSQFRPEDTDYQQ|VAKVEYVRKKPKLKEVQVRLEEHLECACATTSLNPDYREE	.
TALL056	SIN3A	UBE2J2	-/-	-/-	15:75451423	1:1257310	splice-site	splice-site	translocation	upstream	downstream	1	0	0	148	264	low	.	.	.	CGGAGCCTGTGACCGCTTCGTTAGTGGAGAGGTAGCTGGCAGTCCGCTTCGGCGGGCCTGTGCCCCGCGCCGTTCTCGGGGCCTCCCTGCTGAGCTCGCGGCTCACGCTGAGAGGGACACGCAGTGACGAGCGGCCGAAGCAGCTTTGCG|GTGGCTATTATCATGGAAAACTAATTTTTCCCAGAGAATTTCCTTTCAAACCTCCCAGTATCTATATGATCACTCCCAA	.	.	.
TALL056	TAX1BP1	VOPP1	+/+	-/-	7:27740269	7:55497690	splice-site	splice-site	inversion	downstream	downstream	0	1	0	719	97	low	.	.	.	CGGAAGCCTGCGTAACTTTCTCCCTTGATCCGGGAGTCTTTCCACTGG|ATGCCGCTCCTACGAGGACTGCTGTGGCTCCAGGTGCTGTGTGCGGGCCCTCTCCATACAGAGGCTGTGGTACTTCTGGT...CCCCAAATCCCGGCCCAG___GAGCCCAGCAGCCGGGGCCGCCCTATTACACtGACCCAGGAGGACCGGGGATGAACCCTGTCGGGAATTCCATGGCAATGGCTTTCCAGGTCCCACCCAACTCACCCCAGGGGAG	.	.	.
TALL056	TAX1BP1	VOPP1	+/+	-/-	7:27740269	7:55473045	splice-site	splice-site	inversion	downstream	downstream	0	1	0	719	192	low	.	.	.	AAGAGGTTCGGCGGCTGATGGCGGATCAGGATCGGAAGCCTGCGTAACTTTCTCCCTTGATCCGGGAGTCTTTCCACTGG|GAGCCCAGCAGCCGGGGCCGCCCTATTACACtGACCCAGGAGGACCGG...GGCTTcCCAGGTCCCACCCAACTCACCCCAGGGGAGTGTGGCCTGCCCGCCCCCTCCAGCCTACTGCAACACGCCTCCGCCCCCGTACGAACAGGTAGTGAAGGCCAAGTAGTGGGGTGCCCACGTGCAAGAG	.	.	.
TALL056	RBM14	SSBP3	+/+	-/-	11:66617057	1:54404930	splice-site	splice-site	translocation	downstream	downstream	1	0	0	363	371	low	.	.	.	GGCGGATACGACTCCGGAGGAGCTGGCAGCCCTCTTTGCGCCCTACGGCACGGTCATGAGCTGCGCCGTCATGAAACAGTTCGCCTTCGTGCACATGCGCGAGAACGCGGGCGCGCcGCGC...CGGCTGCATGCACGAGCCAGGAACTGCGCAGCCTCTTCGAGCGCCGCGGACGCGTCATCGAGTGTGACGTGGTGAAAG|GTTAGCTTTATACGTCTACGAATATTTACTGCACGTAGGAGCACAGAAATCTGC	out-of-frame	AACTSQELRSLFERRGRVIECDVVK|g*	.
TALL056	RBM14	SSBP3	+/+	-/-	11:66617057	1:54228826	splice-site	splice-site	translocation	downstream	downstream	0	1	0	363	433	low	.	.	.	CCTCTTAATACTTGGAAGATTTTCGTGGGCAATGTGTCGGCTGCATGCACGAGCCAGGAACTGCGCAGCCTCTTCGAGCGCCGCGGACGCGTCATCGAGTGTGACGTGGTGAAAG|TTCCCGATGGGTCCCGGC...GGGAAGATGCCAGAAATTATGCAAGAAGTGAGGTGTCATTATCCAGGAGCTGGTGGGGAGGGCATCTCCCTGCTCCCCTCAACCCCCTCCCACCCCATCCACGCCCCCTACCTTTCCCAATTTTAGTTTCAT	out-of-frame	PLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK|vpdgsr	.
TALL056	RTF1	HENMT1	+/+	-/-	15:41417313	1:108659962	splice-site	splice-site	translocation	downstream	downstream	1	0	0	301	128	low	.	.	.	CGGGCAAGAGGGGAGTCCGGGCGGCGGCCGGCGTGGGAGCCGGGGGACCACCATGGTAAAGAAGCGGAAAGGCCGCGTCGTGATCGACTCGGACACAGAGGACAGCGGCAGCGACGAGAACCTGGATCAG|CTGAGTCAGTGCTGATTCTCTCAAATAGAGCTTGAAGGATAAATCTTCATTTTTGTTTCAACAAAACTTCGAAACAAAATGGAAGAAAATAATCTACAG___TGCAG	out-of-frame	GQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSGSDENLDQ|lsqc*	.
TALL056	DENND1B	NEK7	-/-	+/+	1:197715031	1:198319412	splice-site	splice-site	inversion	upstream	upstream	1	0	0	32	396	low	.	.	duplicates(1)	CTGCGGGCTTCCAGGCCAGCGCGCGGGGGCCGGACGGACAGCCCCACACCGACATGTAACCATGGACTGCAGGACCAA___GGCAAATCCAGACAGAACCTTTGACTTGGTGTTGAAAGTGAAATGTCATGCCTCTGAAAATGAAG___ATCCTGTGGTATTGTGGAAATTCCCAGAGGACTTTGGAGACCAG|CTCCGACAGTTAGTTAATATGTGCATCAACCCAGATCC	in-frame	MDCRTKANPDRTFDLVLKVKCHASENEDPVVLWKFPEDFGDQ|LRQLVNMCINPD	.
TALL056	DENND1B	NEK7	-/-	+/+	1:197772868	1:198232553	splice-site	splice-site	inversion	upstream	upstream	1	0	0	64	186	low	.	.	.	CTGTGAGCAGCCTCTTTCCCTGTGTGGCCGCCGGCGTGGGCGGGGACGGCGCGACCCTCGCGCGGCCGGGCTGCGGGCTTCCAGGCCAGCGCGCGGGGGCCGGACGGACAGCCCCACACCGACATGTAACCAT...GGCAAATCCAGACAGAACCTTTGACTTGGTGTTGAAAGTGAAATGTCATGCCTCTGAAAATGAAG|AGTTCTAAAGTTCCTGTTGCTTCAGACAATGGATGAGCAATCACAAGGAATGCAAG	out-of-frame	ANPDRTFDLVLKVKCHASENE|ef*	.
TALL056	VGLL4	RAF1	-/-	-/-	3:11601833	3:12618747	splice-site	splice-site	duplication	upstream	downstream	1	0	0	141	257	low	.	.	.	CAGACCCTGCCGGTGGCCTCTGCCCTCAGCAGTCACCGCACCGGCCCTCCCCCAATCAGCCCCAGCAAGAGGAAGTTCAGCATGGAGCCAGGTGACGAGGACCTAGACTGTGACAACGACCACGTCTCCAAAATGAGTCGCATCTTCAACCCCCATCT|GTTTAAGAATTGTTTAAGCTGCATCAAT	out-of-frame	QTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFNPHl|fknclsci	.
TALL056	VGLL4	RAF1	-/-	-/-	3:11643437	3:12618747	splice-site	splice-site	duplication	upstream	downstream	1	0	0	101	257	low	.	.	.	GCCAGGAGCTACTCAGCAACAATTGATTTTTGAAACTTAACTCTTTTGGGGCAAAAGCAAAGAGCTGGTTTTCTTTGCTAGCCCAATAAATGCTATTTATGAAGATGGACCTGTTGAACTATCAGTACTTGGACAAGATGAACAACAATATCGGCATTCTGTGCTACGAAG|GTTTAAGAATTGTTTAAGCTGCATCAATGGAGCACATACAGG	out-of-frame	MLFMKMDLLNYQYLDKMNNNIGILCYE|glriv*	.
TALL056	DYRK1A	ERG	+/+	-/-	21:37486614	21:38403709	splice-site	splice-site	inversion	downstream	downstream	1	0	0	329	137	low	.	.	.	GAGCAAGAATGGGTTGCCATTAAAATAATAAAGAACAAGAAGGCTTTgCTGAATCAAGCACAGATAGAAGTGCGACTTCTTGAGCTCATGAACAAACATGACACTGAAATGAAATACTACATAG|ATCCTACGCTATGGAGTACAGACCATGTGCGGCAGTGGC	in-frame	EQEWVAIKIIKNKKAlLNQAQIEVRLLELMNKHDTEMKYYI|dPTLWSTDHVRQW	.
TALL056	CUX1	PRKAR1B	+/+	-/-	7:101816093	7:551470	splice-site	splice-site	inversion	downstream	downstream	0	1	0	220	237	low	.	.	.	TATGTCTCAAGATGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAG|GGCACCGCGTCCGTGCTGCAGCGCCGGTCCCCCAATGAGGAGTACGTGGAGGTGGGGCG...GGCCCCGCTTCGAGCGTGTGCTGGGGCCCTGCTCTGAGATCCTCAAGAGGAACATTCAGCGTTACAACAGCTTCATCTCCCTCACCGTCTGAGCACAGCTCCCGCCCTGCAGCCCCAGCTCCCCAGTGTGGTG	in-frame	MAANVGSMFQYWKRFDLQQLQ|GTASVLQRRSPNEEYVEVG	.
TALL056	CUX1	PRKAR1B	+/+	-/-	7:101916225	7:551470	splice-site	splice-site	inversion	downstream	downstream	1	0	0	269	237	low	.	.	.	CTCAAGATGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAG___AGAGAACTCGATGCCACCGCAACGGTATTGGCGAACCGGCAGGATGAAAGTGAGCAGTCCAGA...GAGTTCAAGAAGAACACTCCAGAG|GGCACCGCGTCCGTGCTGCAGCGCCGGTCCCCCAATGAGGAGTACGTGGAGGTGGGGCGCCTGGGACCCTCTGACTACTTCG___GGGAGATTGCACTGCTGCTGAACCGGC	in-frame	EFKKNTPE|GTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNR	.
TALL056	ACSF3	SLC7A5	+/+	-/-	16:89102759	16:87841155	splice-site	splice-site	inversion	downstream	downstream	0	1	0	759	215	low	.	.	.	GATGATGCCTGAGTTCAGCCCTCAGCAG|GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGAACATTGTGCTGGCATTATACAGCGGCCTCTTTGCCTATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTG	out-of-frame	MMPEFSPQQ|vmcpi*	.
TALL056	MAFK	MAD1L1	+/+	-/-	7:1530898	7:1898390	splice-site	splice-site	inversion	downstream	downstream	0	1	0	184	162	low	.	.	.	CGAGCGCCAGGCGGCGGCGGCGGCCGAGGGGAGCGCGACAGTGAGCGCCGGCGCGAGGACAGCGCGTGCCCGCGAGGAGCCGCCGCGCGCCCGCGCCCTCCGCGCGACGCCAG|AGCTGAAGAAGCAGGTGG...CAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAG___GCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCAC	.	.	.
TALL056	YY1	CTBP1	+/+	-/-	14:100239923	4:1238337	splice-site	splice-site	translocation	downstream	downstream	0	1	0	720	577	low	.	.	.	GCAGATCAAGACCCTGGAGGGCGAGTTCTCGGTCACCATGTGGTCCTCAG|GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCATTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCCATCCTGAAGGACGTGGCCACTGTGGCCTTCTGCGACGCGCAGTCCACGCAGGAGATCCATGAGAAG	in-frame	QIKTLEGEFSVTMWSS|gVRPPIMNGPLHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHE	.
TALL056	MTA1	PTBP1	+/+	+/+	14:105445511	19:807869	splice-site	splice-site	translocation	downstream	upstream	0	1	0	240	847	low	.	.	.	CTCCAGCACCCTCATCGCCCTGGCCGACAAGCACGCAA|AGAGTCACACCCCAAAGCCTCTTTATTCTTTTCG___GCGTCTACGGTGACGTGCAGCGCGTGAAGATCCTGTTCAATAAGAAGGAGAACGCCCTAGTGCAGATGGCGGACGGCAACCAGGCCCAGCTGG___CCATGAGCCACCTGAACGGGCACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCGAAG	out-of-frame	SSTLIALADKHA|kshtpkplysfrrlr*	.
TALL056	PTBP1	MTA1	+/+	+/+	19:797505	14:105450058	splice-site	splice-site	translocation	downstream	upstream	0	1	0	728	327	low	.	.	.	TGGGTCGGTTCCTGCTATTCCGGCGCCTCCACTCCGTCCCCCGCGGGTCTGCTCTGTGTGCCATGGACGG|GGGAAATAGAAGAGGAAATGGAGAAtCCGGAAATGGTGGACCTGCCCGAGAAACTAAAGCACCAGCTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTCTCTGCCCGCCACGCACATCAG___GGGCAAGTGCAGCGTCAC	out-of-frame	MDg|gnrrgngesgnggparetkapaaasgavplpaagvsarhahqgqvqr	.
TALL056	CTDP1	NFATC1	+/+	+/+	18:79715528	18:79527528	splice-site	splice-site	duplication	downstream	upstream	1	0	0	55	46	low	.	.	.	TCAAGAGCAAGGTGCTGGCAGACGTGGCCATAATTTTCAGTGGGCTACACCCGACAAACTTCCCGATAGAGAAGACGCGGGAGCATTACCACGCCACGGCGCTGGGAGCGAAGATCCTCACTCGGCTGGTGCTGAGCCCCGACGCCCCTGACAGGGCCACGCACCTGATCGCCGCGCGAGCTG|TAAATGAAATAATACGAAATGACCTCTCCAGCACGAGCACCCACTCCTAGTTGCCACATTGGAG	in-frame	KSKVLADVAIIFSGLHPTNFPIEKTREHYHATALGAKILTRLVLSPDAPDRATHLIAARA|vNEIIRNDLSSTSTHS*	.
TALL056	CTDP1	NFATC1	+/+	+/+	18:79704917	18:79527528	splice-site	splice-site	duplication	downstream	upstream	1	0	0	58	46	low	.	.	.	GGTGCTCATGGTGGACTTGGACCAGACGTTGATTCACACAACCGAGCAGCACTGTCAGCAGATGTCGAATAAA___GGCATCTTTCACTTCCAGCTGGGCCGGGGTGAGCCCATGCTGCACACGCGCCTGCGTCC...GTACGAGCTGCACGTCTTCACCTTCGGCAGCCGGCTGTACGCACACACCATCGCAG|TAAATGAAATAATACGAAATGACCTCTCCAGCACGAGCACCCACTCCTAGTTGCCACATTGGAGCACTCAGTTCAGC	in-frame	YELHVFTFGSRLYAHTIA|vNEIIRNDLSSTSTHS*	.
TALL056	CTDP1	NFATC1	+/+	+/+	18:79697988	18:79527528	splice-site	splice-site	duplication	downstream	upstream	1	0	0	61	46	low	.	.	.	CTCCGAG___CAAGCTGAACAGCTGGGAAGAGAAGACCAGCAGCGACTGCACCGAAACCGGAAGCTGGTGCTCATGGTGGACTTGGACCAGACGTTGATTCACACAACCGAGCAGCACTGTCAGCAGATGTCGAATAAA|TAAATGAAATAATACGAAATGACCTCTCCAGCACGAGCACCCACTCCTAGTTGCCACATTGGAG	out-of-frame	SEQAEQLGREDQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNK|*	.
TALL056	CPT1A	AKAP8L	-/-	-/-	11:68784815	19:15380612	splice-site	splice-site	translocation	upstream	downstream	0	1	0	561	360	low	.	.	.	AGCAGATGCAGAGGATCCTGGACAATACCTCGGAGCCTCAGCCCGGGGAGGCCAGGCTGGCAGCCCTCACCGCAGGAGACAG|CTCATGATGGAGCAGTCCAAGAAGTCCTCCCTCATGGTGGCCCGCAGTATT...CAAGCTCATCAGCAAGAAGCTGGAGCGCTACCTGAAG___GGCGAGAACCCTTTCACCGACAGCCCCGAGGAGGAGAAGGAGCAGGAGGAGGCTGAGGGCGGTGCCCTGGACGAGGGGGCGCAGGGCGAAGCGGCA	out-of-frame	QMQRILDNTSEPQPGEARLAALTAGDs|s*	.
TALL056	LMNB1	ZNF775	+/+	+/+	5:126777252	7:150410160	splice-site	splice-site	translocation	downstream	upstream	0	1	0	635	194	low	.	.	.	CGGCGCGAACCCTGCTGGGCCTCCAGTCACCCTCGTCTTGCATTTTgCCGCGTGCGTGTGTGAGTGG|TTGCAGAGTGGGCAGGATCTTAAGACCCGATAGGTGCAGAACCCATCTGGACACGGAGACCAGGA...CACTGCACCCGGGCATGAGGACACATCCAGTAAGAAGACCTGCCTCAAGAGGTGCACTGCGGTGACCAGTGGAGGTGACTGGTTGGAGCCTGGAATTGGAAGCAGATTCCAAGCTCTGGTGGACAAACTCTCC	.	.	.
TALL056	LDLRAD4	MEX3C	+/+	-/-	18:13387762	18:51177576	splice-site	splice-site	inversion	downstream	downstream	0	1	0	133	755	low	.	.	.	CCGGGGAGCAGTATGCCGGAAGCTGGTTTTCAGGCCACAAATGCTTTCACAG|GTTGTAAAATTAAAGCACTGAGAGCCAAGACAAACACGTATATCAAGACTCCTGTTCGTGGTGAAGAGCCCATTTTTGTTGTCACTGGAAGGAAAGAAGATGTTGCCATGGCCAAAAGAGAGATCCTCTCAGCTGCAGAGCACTTCTCCATGATTCGTG	in-frame	MPEAGFQATNAFT|gCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIR	.
TALL056	GNAQ	ARIH1	-/-	+/+	9:77794463	15:72580731	splice-site	splice-site	translocation	upstream	upstream	0	1	0	634	262	low	.	.	.	CCTCTATCATGTTTCTAGTAGCGCTTAGTGAATATGATCAAGTTCTCGTGGAGTCAGACAATGAG|CGATCTAGGGCAGCCCTGCAGAGGTACCTGTTCTACTGTAATCGCTATATGAACCACATGCAGAGCCT...ACCTCAAAAAGAATAACCAGTCCATTATCTTTGAG___AATAACCAAGCAGATCTAGAGAATGCCACAGAGGTGCTCTCGGGCTACCTTGAACGAGATATTTCCCAAGATTCTCTGCAGGATATAAAGCAGAAA	in-frame	SIMFLVALSEYDQVLVESDNE|RSRAALQRYLFYCNRYMNHMQS	.
TALL056	CBFA2T3	ACSF3	-/-	+/+	16:88901504	16:89145267	splice-site	splice-site	inversion	upstream	upstream	0	1	0	294	979	low	.	.	.	GCCGCCCCCACCGCCTGCCGCATCCCAGGGGGCCACACGCCCCCCCTCCTTCACGCCACACACAC|GGGACACCGTGGTGTTTAAGGATGGCCAGTACTGGATCCGAGGCCGGACCTCAGTGGACATCATCAAGACTGGAGGCTACAAGGTCAGCGCCCTGGAGGTGGAGTGGCACCTGCTGGCCCACCCCAGCATCACAG___ATGTGGCTGTGATTGGAGTTCCGGATATGAC	in-frame	PPPPPAASQGATRPPSFTPHT|rDTVVFKDGQYWIRGRTSVDIIKTGGYKVSALEVEWHLLAHPSITDVAVIGVPDM	.
TALL056	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89145267	splice-site	splice-site	inversion	upstream	upstream	0	1	0	173	979	low	.	.	.	CGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GGGACACCGTGGTGTTTAAGGATGGCCAGTACTGGATCCGAGGCCGGACCTCAGTGGACATCATCAAGACTGGAGGCTACA...GGGAGCTCAAAGAGTGGGCCAG___AAATGTCCTGGCCCCGTACGCGGTGCCCTCGGAGCTGGTGCTGGTGGAGGAGATCCCGCGGAACCAGATGGGCAAGATTGACAAGAAGGCGCTCATCAGGCACTTCCACCC	.	.	.
TALL056	MIR181A1HG	DEK	-/-	-/-	1:198937226	6:18237516	splice-site	splice-site	translocation	upstream	downstream	1	0	0	326	901	low	.	.	duplicates(1)	CTTCCACAGGAGCAAGGGATGTCTGAGCACAAGTGGCTGAGTTCCGAGTGACTTTATGAAGCACTTTCTACCTTCCTCTCCGGCATGAAAACAGGGATTCTGCACCTGCATCATGGACAGTCTGGCAAAAGCCTCTGCTCTGCCTCCGGGGACAAGAAACTAGAGCAAATAACCGTTTTGAAATT|CCACCAAAAAAGACAGCCAAAAGAGAAAAACCTAAACAGAAAGCTACTTCTAAAAGTAAAAAATCTGTGAAAAG	.	.	.
TALL056	CD28	STK17B	+/+	-/-	2:203706748	2:196146055	splice-site	splice-site	inversion	downstream	downstream	0	1	0	171	1328	low	.	.	.	CGGGGAGGAGGGGCTGGAACCCTAGCCCATCGTCAGGACAAAGATGCTCAGGCTGCTCTTGGCTCTCAACTTATTCCCTTCAATTCAAGTAACAG|TGCTGCAGGTGGAGAAATTTTCAGCCTGTGTTTACCTG...CACACATCACCATTTGTGGGAGAAGATAATCAAGAAACATACCTCAATATcTCTCAAGTTAATGTAGATTATTCGGAAGAAACTTTTTCATCAGTTTCACAGCTGGC	out-of-frame	MLRLLLALNLFPSIQVT|vlqvekfsacvy	.
TALL056	HP1BP3	FURIN	-/-	+/+	1:20787195	15:90875582	splice-site	splice-site	translocation	upstream	upstream	1	0	0	684	168	low	.	.	.	CTCGGCGGCTGGGACTGGAGGACAGCGGTGGCGGAGGCGACTAGCGGCGGCGGGAGCGGCGCCGAGAGGCCGTGCGGGACGCGGGCGCCAGGACCGGCCGAACGCAGAG|GGTCGGCACTCTTCACCCTCCCGAGCCCTGCCCGTCTCGGCCCCATGCCCCCACCAGTCAGCCCCGGGCCACAGGCAGTGAGCAGGCACCTGGGAGCCG	.	.	.
TALL056	AP3D1	DOT1L	-/-	+/+	19:2137011	19:2229785	splice-site	splice-site	inversion	upstream	upstream	1	0	0	113	105	low	.	.	.	CGCGGCATCCGTAACCACAAGGAGGACGAG___GCAAAATACATATCTCAGTGCATTGATGAGATCAAGCAGGAGCTGAAGCAGGACAACATAGCGGTGAAGGCGAACGCGGTCTGCAAGCTGACGTAT___TTAC...GTGCCTCCAAGTTCACCTTCAAG___CGAATTGGCTACCTCGCTGCTTCCCAGAGCTTTCACGAAGGCACCGACGTCATCATGCTGACCACCAATCAGATCCGTAAG|GTAACTAGGATTTCTACCTCAACCGCGAG	out-of-frame	ASKFTFKRIGYLAASQSFHEGTDVIMLTTNQIRK|vtriststa	.
TALL056	DOT1L	AP3D1	+/+	-/-	19:2194577	19:2102268	splice-site	splice-site	inversion	downstream	downstream	1	0	0	101	123	low	.	.	.	CGAGAAGCTCAACAACTACGAGCCCTTCTCCCCCGAGGTGTACGGGGAGACCTCCTTCGACCTGGTGGCCCAGATGATTGATGAGATCAAGATGACCGACGACGACCTGTTTGTGGACTTGGGGAGCG___GTGTG...CGAGAAAGCAGACATCCCGGCCAAGTATGCGGAG___ACCATGGACCGCGAGTTCAGGAAGTGGATGAAATGGTATGGAAAAAAGCATGCAGAATACACA|GGTGAGAACTCTGTCTCAGTCGACGGGAAGTGCAG	in-frame	EKADIPAKYAETMDREFRKWMKWYGKKHAEYT|GENSVSVDGKC	.
TALL056	CAPRIN1	RBM4	+/+	+/+	11:34083041	11:66665856	splice-site	splice-site	deletion	downstream	upstream	1	0	0	732	94	low	.	.	.	CAGAAGAGTACACTGAGCAAAGTGAAGTTGAATCAACAGAG___TATGTAAATAGACAGTTCATGGCAGAAACACAGTTCACCAGTGGTGAAAAGGAGCAGGTAGATGAGTGGACAGTTGAAACGGTTGAG|GCAAGATAACCCCTGTGACAGAAGGCTACTGTTGCTGTAACAAAGGGCATACATACATTTTCAA	out-of-frame	EEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVE|ar*	.
TALL056	CAPRIN1	RBM4	+/+	+/+	11:34052636	11:66639700	splice-site	splice-site	deletion	downstream	upstream	0	1	0	658	1856	low	.	.	.	GCAGATTCTCGGGGTGATCGACAAGAAACTTCGGAACCTGGAGAAGAAAAAG|GCTCTTGTCAGGATGGTGAAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGCAGTATGGGAAGGTGCTGGAATGTGACATCATTAAGAATTAC	out-of-frame	QILGVIDKKLRNLEKKK|alvrmvklfignlpreateqeirslfeqygkvlecdiikn	.
TALL056	PITPNM2	CDK2AP1	-/-	-/-	12:123110385	12:123267282	splice-site	splice-site	duplication	upstream	downstream	1	0	0	159	396	low	.	.	.	GGCGGGCGCTCCCCGTGAGGCGGCGTGAGGTGGCGGCGGCCCAGCCGGGGCCCCGAAGAGGACAGAGCCCGCGGCCGCGCCGAGCGGG___GATGCTGGCACGTGTGTCCTGGTCCTCAACAACCTTCTGTGAGCCTAGGGACCCATTTCTCCTCCTTTGACAGGGACATCAGTGGAGCCTTCTCAGACCCACAG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCA	.	.	.
TALL056	RBM14-RBM4	SSBP3	+/+	-/-	11:66617057	1:54228826	splice-site	splice-site	translocation	downstream	downstream	0	1	0	363	433	low	.	.	.	CCTCTTAATACTTGGAAGATTTTCGTGGGCAATGTGTCGGCTGCATGCACGAGCCAGGAACTGCGCAGCCTCTTCGAGCGCCGCGGACGCGTCATCGAGTGTGACGTGGTGAAAG|TTCCCGATGGGTCCCGGC...GGGAAGATGCCAGAAATTATGCAAGAAGTGAGGTGTCATTATCCAGGAGCTGGTGGGGAGGGCATCTCCCTGCTCCCCTCAACCCCCTCCCACCCCATCCACGCCCCCTACCTTTCCCAATTTTAGTTTCAT	out-of-frame	PLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK|vpdgsr	.
TALL056	RBM14-RBM4	SSBP3	+/+	-/-	11:66617057	1:54404930	splice-site	splice-site	translocation	downstream	downstream	1	0	0	363	371	low	.	.	.	GGCGGATACGACTCCGGAGGAGCTGGCAGCCCTCTTTGCGCCCTACGGCACGGTCATGAGCTGCGCCGTCATGAAACAGTTCGCCTTCGTGCACATGCGCGAGAACGCGGGCGCGCcGCGC...CGGCTGCATGCACGAGCCAGGAACTGCGCAGCCTCTTCGAGCGCCGCGGACGCGTCATCGAGTGTGACGTGGTGAAAG|GTTAGCTTTATACGTCTACGAATATTTACTGCACGTAGGAGCACAGAAATCTGC	out-of-frame	AACTSQELRSLFERRGRVIECDVVK|g*	.
TALL056	LINC01221	SRSF10	+/+	-/-	1:199016465	1:23967723	splice-site	splice-site	inversion	downstream	downstream	1	0	0	315	559	low	.	.	.	TCTTTCTCCAGTTGAGTTTCAGATGAGACTGTACTTCCAGGCAAATCCTTTTTGCAATCTTGTTCACCCCAAACAGAGGACTCAGCTAAGCTCTTCCCAGATTCCAGATACACAGAAATTTTAAG|ACCAAACTGCAGCTGGAATACCCAGTACAGTTCTGCTTACTACACTTCAAGAAAGATCTGAAAGCGGAAAAAGAACCAAAGAAGGGCAGTTCAAGCGACC	.	.	.
TALL056	ZFR	SUB1	-/-	+/+	5:32444622	5:32588512	splice-site	splice-site	inversion	upstream	upstream	0	1	0	216	3966	low	.	.	.	GCGGGTGAGAGTTCAGAGTTCAGCAGCAGCAGCCCGAGCCCATGATTCCCATATGCCCTGTAGTTTCTTTCACCTATG|GATGCCTAAATCAAAGGAACTTGTTTCTTCAAGCTCTTCTGGCAGTGATTCTGAC...ATTTTAAAGGCAAAGTGCTAATTGATATTAGAGAATATTGGATGGATCCTGAAGGTGAAATGAAACCAGGAAGAAAAG___GTATTTCTTTAAATCCAGAACAATGGAGCCAGCTGAAGGAACAGATTTCTGAC	out-of-frame	MIPICPVVSFTY|gclnqrnlflqallavil	.
TALL056	ANP32B	NINJ1	+/+	-/-	9:97983609	9:93126638	splice-site	splice-site	inversion	downstream	downstream	1	0	0	2237	463	low	.	.	.	GCGCCGCCGGCCTCCGCCGCTAGCAAACCCTTCCGACGGCCCTCGCTGCGCAAGCCGGGACGCCTCTCCCCCCTCCGCCCCCGCCGCGGAAAGTTAAGTTTGAAGAGGGGGGAAGAGGGGAACATGGACATGAAGAGGAGGATCCACCTGGAGCTGAGGAACCGGACCCCGGCAGCT|CCGGCCCGCTGGGGCTGGAGGCACGGGCCCATCAACGTGAACCATTACGCCAGCAAGAAGAGCGCAG	in-frame	MDMKRRIHLELRNRTPAA|PARWGWRHGPINVNHYASKKSA	.
TALL056	PSPC1	ZMYM5	-/-	-/-	13:19751271	13:19852190	splice-site	splice-site	duplication	upstream	downstream	1	0	0	815	532	low	.	.	.	ACAACCACCACGTTTTGCTCAACCTGGGACATTTGAATTTGAGTATGCATCTCGATGGAAGGCTCTTGATGAAATGGAAAAGCAGCAGCGTGAGCAGGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGAGGCAGAAATGGAAGCAGCTAGGCATGAACACCAATTAATGCTAATGAGGCAAG|GTTCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGAC	out-of-frame	QPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQ|gslawknvqwed*	.
TALL056	PSPC1	ZMYM5	-/-	-/-	13:19759323	13:19852190	splice-site	splice-site	duplication	upstream	downstream	0	1	0	714	532	low	.	.	.	GGAACCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTGATGCAGAAAACTCAACAATATCATAA|GTTCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCT...GGCATCTCAGAAAGGAAATATAAGTGAGACAATTGTTATTGATGATGAAGAGGACATAGAAACAAATGGAGGAGCAGAGAAAAAGTCTTCCTGTTTTATCGAATGGGGACTTCCTGGAACTAAAAACAAAAC	in-frame	EPMEQFDDEDGLPEKLMQKTQQYHk|figMEKCSVGGLELTEQT	.
TALL056	TTK	ELOVL4	+/+	-/-	6:80005982	6:79916883	splice-site	splice-site	inversion	downstream	downstream	0	1	0	271	2089	low	.	.	.	GAGACATTAAAAATAAGTTTAAAAATGAAGACCTTACTGATGAACTAAGCTTGAATAAAATTTCTGCTGATACTACAG|ATTCAATTCCATGTGACCATTGGGCACACGGCACTGTCTCTTTACACTGACTGCCCCTTCCCCAAATGGATGCACTGGGCTCTAATTGCCTATGCAATCAGCTTCATATTTCTCTTTCTTAACTTCTACATTCGGACATACAAAGAGCCTAAG	out-of-frame	DIKNKFKNEDLTDELSLNKISADTT|dsipcdhwahgtvslh*	.
TALL057	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	16	32	12	158	212	high	.	.	duplicates(23),low_entropy(2),mismappers(2),mismatches(4)	GGGGAGGGGAGCCGGCTCCCCAGCCTGCTTTCTCCTGCCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...AAAAGGCAGAAAATACACACGCGG?GAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...GCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCT...___...CATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAG	.	.	.
TALL057	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	22	0	164	52	high	.	.	duplicates(8),low_entropy(2)	CTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCA...GCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCACCTTCCTGAGCCACCCGTGGCCAGGCTCTGCTG	.	.	.
TALL057	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	4	10	1	85	47	high	.	.	duplicates(8),low_entropy(1)	CAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAG...CGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACA	.	.	.
TALL057	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	13	0	55	61	high	.	.	duplicates(12),low_entropy(12),mismatches(1)	CAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATG...AAGCAGCgTCCAGACACGGAGCGCCTCATTGTgG___ATTACTCATGgGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAAgTGGATCTGCTTCTACAGCAACAgCTTCC...GTTCCATGACTAAAGAAAAAACAGCTCGCCTCATTCCCAATGCCATCCAAGTTTGCACTGATTCAGAAAAG___CACTTCTTCACTTCGTTTGGGGCCCGGGATAGGACATATATGATGATGTTCCG	.	.	.
TALL057	STIL	TAL1	-/-	-/-	1:47314036	1:47225889	splice-site	splice-site	deletion/read-through	upstream	downstream	4	10	0	75	145	high	.	.	duplicates(4)	CCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGGGGCGGCGCCGCGAGAGACTTAAAGGGCCGCGACGCGGCGACGGCCGAAGCGCGCCATCGGGTGCCCACCACCGAGCTGTGCAGACCTCCCGG	.	.	.
TALL057	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	4	10	0	75	64	high	.	.	duplicates(7),low_entropy(1),mismatches(1)	GCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGG	.	.	.
TALL057	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	14	32	5	148	103	medium	.	.	duplicates(35),low_entropy(1),mismappers(1),mismatches(4)	CCCACCACCTCCAAATCATGCAAGACACAGG___...CTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCG	.	.	.
TALL057	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	8	10	0	47	96	medium	.	.	duplicates(18),low_entropy(16),mismappers(2)	GCGCCGGCGCTGAGCGGGCCCCCGCCGCCCGCGCACTCCCGAGGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGCAGCAACAATGGCAAACGTGCATCTGCCAGTGGCCAGCAGCCAGCTGCATCCCGT...TGCCTACGGGGACTCTAACCAGTGTGAGCCCAACCCAGGGTGCTGGGCCTGCAGGGGTAAGCCCACCTCCCCTACCTGGAGCCGGAACACAGCATCATCCCAGTAAGC	.	.	.
TALL057	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	7	2	1	162	723	medium	.	.	duplicates(4),low_entropy(1)	GCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___...GGACACGGCCGCCCCAGGAGGGTCCTTG...___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACC	out-of-frame	MKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL057	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	19	723	low	.	.	duplicates(1),read_through(5)	GCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAAT...GGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAG	out-of-frame	DSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL057	STIL	TAL1(1104),STIL(16815)	-/-	./-	1:47314036	1:47233324	splice-site	intergenic	deletion/read-through	upstream	downstream	1	5	0	75	16	medium	.	.	duplicates(6),mismappers(1)	CCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|AATGAACCCAGAGACCCTCCGTGGGCTGAGCGCATCATCCAGCTGGCACTGAACTCAGATTTCTACCCCACAGTAAAGACCCTGGTCTCTGCAATGAGTTGAGCCCAGGTCCCTTTCCCTGGCTAGGTTTTGGCTGCCCCTCTTCATCAGCTGAGCCGCAGAGAAGACTCCGTGTCAAATTTCCTTCCAAGGCAGACTCCACCAAGCACTAG	.	.	.
TALL057	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	0	8	212	medium	.	.	duplicates(1),mismatches(1)	CGGGGGGCGGCGTGAGCGGCTGCGGGGCCCCCAGGCGCCCCGGCCCCTCCCCGGGCTCCACGCCGCGGGCAGGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCC...GCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCC	.	.	.
TALL057	DEPDC1	PARP11	-/-	-/-	1:68476834	12:3812073	3'UTR	splice-site	translocation	upstream	downstream	2	0	0	63	54	medium	.	.	.	GAAGCAGCACTTTTTGGTGACAAACCTACAATCAAGCAACCAATGCTGATTTTAAGAAAACCAAAGTTCCGTAGTCTAAGATAACTAACTGAATTAAAAATTATGTAATACTTGTGGAACTTTGATAAATGAAGCCATATCTGAGAATGTAGCTACTCAAAAGGAAGTCTGTCATTAATAAG|GAAGGTTTGCTCTTCAGTCATCTAGCCACTAAATGTTAATTATCTGATACTTTTGAAACAGATATGAAAAAAAG	out-of-frame	EAALFGDKPTIKQPMLILRKPKFRSLR*ltelkim*ylwnfdk*shi*ecsyskgslslir|kvcssvi*	.
TALL057	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	4	4	0	18	14	low	.	.	duplicates(2),mismappers(1)	GGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTG	.	.	.
TALL057	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	3	9	8	low	.	.	duplicates(2)	GTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAG	out-of-frame	LEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqk	.
TALL057	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	1	26	143	low	.	.	duplicates(4)	CTCCCAGAGACCACCTCAGGATGGGGGCTTCCTTCCTGACTTCAGCACAGCAGCACCTGTCACCACTCACCTCAAGAGGTGGCTCCCGAGCCTCCTGGGAGGGAAGGGGCCATGGCAGTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCAGCCTGCTCTTCCTGGTGGCCCATCT	.	.	.
TALL057	C9orf171	EEF1A1P5	+/.	+/.	9:132528015	9:133019827	intron	exon	deletion	downstream	upstream	0	0	4	2	7895	low	.	.	duplicates(2),mismatches(2)	.	.	.	.
TALL057	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	3	0	0	116	37	low	.	.	duplicates(1),low_entropy(1),mismappers(1)	GGAAAATGAAAGCGGTCGTGGCCAGGACTGGCGCAGCTGCCGTTTCAGGCGAGGGGCGCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL057	ZNF577	AC006272.1	-/-	-/-	19:51877282	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	2	0	107	13	low	.	.	duplicates(2),low_entropy(1),mismappers(2)	GGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGG	out-of-frame	ENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICP|gfiiiq*	.
TALL057	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	0	1	2	40	116	low	.	.	duplicates(1),mismappers(1)	CTGTATaGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATC...GAAAGACGTCATTACTCTACGGAGACATGTGGAAACAAAAGTTAGAGCTAAAATCCGTAAGAGGAAGGTGACAACGAAAATCAACCATCATGACAAAATCAATGGAAAGAGGAAGACCGCCAGAAAACA___GA	.	.	.
TALL057	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	9	428	low	.	.	duplicates(1)	CTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGC...TCTCCAGGACAAGGACCTCTTCTCTGTCTTCGCTGATCCCAATATGCTTGATAC___GTTGGTGCCTGCTCACCCAGCCCTCGTCAATGCCATTGTCCTGGTTCTGCACTCCGTAGCAGGCAGTGCCC	.	.	.
TALL057	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74458896	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	9	446	low	.	.	.	GGTTGCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|GGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCACCTGGCGGTGAAGCTGGCTGACCAGCCACTTACTCCAAAGTCTATTCTTCGGTTGCCAGAGACAGAACTGGGAGAATACTCGCTAGGGGGCTATAGTATTTCATTTCTG	.	.	.
TALL057	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	0	2	1	56	6	low	.	.	.	CACCCCTCCACCCACTCAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAACTGCAGCATATAGTATCATGAGCTAATAAACAATTCCTGCTTTA	.	.	.
TALL057	KLRB1	RP11-705C15.2	-/+	+/+	12:9607802	12:9653683	CDS	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	2	0	237	205	low	.	.	.	ATTTTCTTGCCCTcGTATGACTCGGATAGCCCTCCCAGAGGAATCTTCACGGCTTGCCGCaTGCGGGAAGAGACAG___AATGCTAACTCTTCAGAGACACAGGAAAGTGCCAGTTTCAACAAATG___TTGTGATTAT...ATGCCGAAAGGAAAATTAAAGCCACTTACCCCGAGGAAGAGATGAAGGTGAAGAACTTTCTGGGCCTGAGTCTGTGG|ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAG___AATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAATCATCC	.	.	.
TALL057	KLRB1	RP11-705C15.5	-/+	+/+	12:9607802	12:9653683	CDS	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	2	0	237	205	low	.	.	.	ATTTTCTTGCCCTcGTATGACTCGGATAGCCCTCCCAGAGGAATCTTCACGGCTTGCCGCaTGCGGGAAGAGACAG___AATGCTAACTCTTCAGAGACACAGGAAAGTGCCAGTTTCAACAAATG___TTGTGATTAT...ATGCCGAAAGGAAAATTAAAGCCACTTACCCCGAGGAAGAGATGAAGGTGAAGAACTTTCTGGGCCTGAGTCTGTGG|ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAG___AATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAATCATCC	.	.	.
TALL057	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	56	142	low	.	.	duplicates(4),mismatches(2)	CACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACagcGTCTtCA...GAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCT	.	.	.
TALL057	B3GNT5	KLHL24	+/+	+/+	3:183272440	3:183635701	3'UTR	5'UTR	deletion/read-through	downstream	upstream	0	0	2	126	320	low	.	.	mismappers(3)	AGGCCAAAATAATGACTTCAGCAAGAGTGACTGAACTCACTCTAAGGCCTTTGACTGCAGAGGCACCTGTTAGGGAAAATCAtATGTCTCATATAATAAGGTGATGTCGGAAACACGCAAAACAAAACGAAA...|...GACCGCGG...GAG___GTGTGGAAATTAAAAGAACACACATATTTTGACTGGGGCTTTGATCAACCAAATGCTAAAAAG___CCACATAAAGAAGATCCCTAAT	.	.	.
TALL057	KLHL24	B3GNT5	+/+	+/+	3:183635793	3:183269498	splice-site	splice-site	duplication	downstream	upstream	0	1	0	235	177	low	.	.	.	TTAGCCACTGCTGGCTGCTTCCAGTGTTCGCCGAGAGGTACCGGGGGTGACAGCTCCGGGACCGGCCGAAAGGCGAGGAACCG|GTGGCATGGAATATTCACATGGGAGAGCCGCATGAGGCCGCCCACCACGC...AAGAAACTATTTTGTAAAATAAGAAGACTTCCATTTTgAATGACCAACATGTATTAAGATGGACACCTACTCTACGAAACACGAAGTTCTATGGTCTCGAAGAAGCCCGTGCCTGTTTAAAACTGATCCTAAC	.	.	.
TALL057	STK10	RANBP17	-/-	+/-	5:172044220	5:171260985	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	2	259	1	low	.	.	duplicates(1),mismappers(1),mismatches(1)	GTTTGCTTTCCACTTAAGACAAAGCtTTGTCTATGTGGGGGGCGGGGACCGGGGAAAGAGGGAGGCTGAAATGTTTATTCTGCTTCTCCCGTGTTTCATGCCATCTCGCGTCCCCCT...|...TAATGTGTCCA	.	.	.
TALL057	PSMD5	CTA-384D8.31(153),KLHDC7B(228)	-/-	./+	9:120821460	22:50547805	CDS	intergenic	translocation	upstream	upstream	0	0	2	19	10	low	.	.	.	TTTGAAAGCAATCTGCTGGATGATTTGAAAAGTGTAATGAAAACAAATGACATTGTTCGATACAGGGTGTATGAG___GATTCGTGAAGTTTTTTGGAAACCTGGCTGTCATGGATAGTCCTCAACAGATCT___GAACT...|...CCCCAAGTCCAGCTGCAGCCGCAACTCCAGCCCCAGCCCCAGTCCCAGTCCCAACCCTCACACCCCCATCCCCAGCCCTAACCCCAGTCCCAACCCCAGCCCTAAGCCCAGCTCCAACTCCAGCCCTAACCCC	.	.	.
TALL057	RP5-991G20.1	ZFHX3	+/+	-/+	16:72713399	16:72820783	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	24	2	low	.	.	.	CTTTATTCTTCTTTCTCACCCAACGATTTACCTGAACGGTTATAAAGTGCACGTTATTTCCCTAAG___CACTTTGAGTATATTGGCCCACTGCATTCTGGACTTCAAAATTTCTGATGCGAAATATGCTGATACT...|...ACAACCAGAGTGGGAAGGAACCTCAGAAACCTTTGGACCAACAGAGGAAAAAGCCCAGAGGTGCAGGACATAGATCAAAACCAGTCGCATGCGAGTCATTCTAGGATCCGGCCAAAGTTAATTAACAGAGGGCCATTCAGTCTCCA	.	.	.
TALL057	AASDHPPT	DOCK9	+/+	-/+	11:106097559	13:98807137	3'UTR	intron	translocation/5'-5'	downstream	upstream	0	0	2	103	5	low	.	.	.	TTAGGATGCTTTTGGCCAGAGGTAACAGTGTCCAAATATAATTGGCCTAAGTAACCTAGGAAATTGTTTGACATAACACAGGGTTCAGGGGTGTCATTAAAGACACACTTTTTTTGCCTTGACCTCAGTTGGTT...|...GCAGGTTCCAAAAGGGTCTTCATGAGAACAGAATGCCAGAGGACAGCTCTCTAAGCAGAAAATGATCGCCATTCCCACAGTCACGCTGCTGGTGAGTTCATTCCTTGGCCTGTCCATGTGTCCATTCACC	.	.	.
TALL057	GLT8D1	XPO4	-/-	-/-	3:52700448	13:20831828	CDS	intron	translocation	upstream	downstream	0	0	2	106	3	low	.	.	.	CAGGGGAGGTGCAGCTCAACGTGGAGTTTGGAGGAGGCTACCTTGACCTTTGAATGCCAAGTGGGAGCCAGCCAGATGAAAGG___GGTTAAAAACTAATATTTATATGACAGAAGAAAAAGATGTCATTCCGTA...|...AAAAAAAAAAAAAAAAAAAAAAAATCACTGTACTAAATGTCCTGATTCTTTAATTTGGTGAGAACATGGATGGGAAGGT	.	.	.
TALL057	CD226(20087),RTTN(21903)	CD226	./-	-/-	18:69981890	18:69947433	intergenic	splice-site	deletion/read-through	upstream	downstream	1	0	1	1	34	low	.	.	.	CAGAGTTAAAGGTCTGTCTCCTACCTACTTAGAGCTAAGGGCATAGATCAAGTCAATGCAAGTATTCAATTAAAAAGAAAATGACTGCAGATCTGTTTCTATTTAATACTTAGAGAATTGTAGGTTCTAGGTACTCTGAAACAGCCACTAATTTCATTCCCTTGGCTTACCTATTCCCTTGGATATAG|AACCAGCCTTTCAAACAGTTTCCAG	.	.	.
TALL057	CCNB1IP1	RP11-106M7.1(18027),TAF9BP2(11445)	-/-	./-	14:20316341	10:114797930	CDS	intergenic	translocation	upstream	downstream	0	0	2	285	2	low	.	.	.	AAACTCTCTGGCTATGCATGGGTCACTGCCTGCTCTCACATCTTCTGTGATCAGCATGGCAGTGGTGAGTTTAGTCGCTCACCAGCTATCTGTCCTGCCTGCAACAGTACCCTTTCTGGAAAGCTAGATATT...|...GTATATATGGACAAAAATGTGTTATGTTACTCAGATAAAGTAGATAAGATAACTTCATAATACCAGGTCACAGAGTGGAATATTTAGGAATTATAGGCCAATCTAACTGTCCTGTCCCACTTTAGCCCCAGAA	.	.	.
TALL057	KLHL8	RAP1GDS1	-/-	+/+	4:87220418	4:98352476	splice-site	splice-site	inversion	upstream	upstream	1	0	1	51	155	low	.	.	duplicates(1)	CTCGCGGGGGCTGAGGCGAGAGGACGCCAAGCGCCCGCCGGGGCTCCGCGGGGCCGCGCAGGAGAGCGCGCGTCCGCCGGGTGCTCGCGCGGGGTTGGTGAGGTTCCGCTGAGGGCGGCCGGGGCTCTGGGAGCGTGGTAACGTGGCTGCAACCTTAGCGACATCAGGAAGAACAGGGTCGAGGATCGAG|AGTTTATGCGAATTCCATGTGTGGATGCTGGATTGATTTCACCACTGGTGCAGCTGCTAAATAGCAAAGACCAG	.	.	.
TALL057	TTYH3	MAD1L1	+/+	-/-	7:2632278	7:1898390	splice-site	splice-site	inversion	downstream	downstream	1	1	0	498	255	low	.	.	.	GGCCGGGCCCCGCCATGGCCGGGGTCAGCTACGCGGCGCCCTGGTGGGTGAGCCTCCTGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|AGCTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAG___GCCACCAGCCCCTCGGGTTCCAAGATGCAGCTAC	out-of-frame	MAGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQ|s*	.
TALL057	SPRED2	B3GNT2	-/-	+/+	2:65431962	2:62222212	splice-site	splice-site	inversion	upstream	upstream	1	0	1	178	621	low	.	.	duplicates(1)	GCAGCCTGCCTTTGCACCCCTTCCCCCAAACCCTATCCCGCGCCCTGCTTCCCCTTCTGCTGCGGCGCCCTCTTCATCTCTAGCCGCCCCCCCTCCCCAAATCAGGCGATCTCCGGAGATGTGAAGAAGGGGGGCGAGCGGACAGGAAGATGAAGGGAGCAAAGCTGCCCGCCGCGGGACAGGCGTCTAGGTGAACAAGAAAATGACCGAAGAAACACACCCAGACGA|ATATGAGAAATGAGTGTTGGACGTCGAAGAATAAAGTTGTTGGGTATCCTGATGATGGCAAATGTCTTCATTTATTTTATTATGG	out-of-frame	MTEETHPDe|yek*	.
TALL057	SPTAN1	LDB1	+/+	-/-	9:128575345	10:102111536	splice-site	splice-site	translocation	downstream	downstream	2	0	0	613	757	low	.	.	.	TGGACTGGATCAATGACAAG___GAAGCAATTGTTACTTCTGAAGAGCTGGGCCAGGATCTGGAGCATGTAGAGGTTTTACAGAAGAAATTTGAAGAGTTTCAAACAGATATGGCTGCTCATGAAGAAAGAGTTAATGAAGTGAACCAGTTTGCTGCCAAACTCATACAG|GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTTCCCC	out-of-frame	DWINDKEAIVTSEELGQDLEHVEVLQKKFEEFQTDMAAHEERVNEVNQFAAKLIQ|vvpqshssctrrrsprtatpf	.
TALL057	FKRP	NFYB	+/+	-/-	19:46748663	12:104135534	splice-site	splice-site	translocation	downstream	downstream	0	1	0	62	209	low	.	.	duplicates(1)	GGAGAGACAAGTAAACTCTCAGAGTAACTGTCCCCTCTGACTACCATTTCTA|AGGTTGAAATCACAAAGATTAGACACCTTTTTAGATAGGTGTTCTTCAGCACCACTGACAACACGGTTCTGACAGTATTTCATGACA___ATGGATGGTGACAGTTCTACAACAGATGCTTCTCAACTAGGAATCTCTGCAGACTATATTGGAGGAAGTCATTATGTTATACAGCCTCATGATG___ATACTGAG	.	.	.
TALL057	EXOC6	SNX13	+/+	-/-	10:92848634	7:17816289	splice-site	splice-site	translocation	downstream	downstream	0	1	0	197	69	low	.	.	.	GCGAGAGTCTGGGCACCGTCCCCGAGCACGAGCGGATCTTGCAGGAGATCGAGAGCACCGACACCGCCTGTGTGGGGCCCACCCTCCG|TTTGAAAGTCTCTCAAGCATATTGAAACTTCCTGGAAAAAAGACT...TAGCTCCTGAAATGATGAAGGCATCCCCaGCTTTAGCTCACTATGTGTATGATTTCCTTGAGAACAAAGCCTACAGTAAAGGAAAAGGGGATTTTGCTCGCAAG___ATGGACACTTTTGTAAATCCACTTCGCA	out-of-frame	ESLGTVPEHERILQEIESTDTACVGPTLr|lkvsqay*	.
TALL057	RBM19	IQGAP1	-/-	+/+	12:113823209	15:90473715	splice-site	splice-site	translocation	upstream	upstream	0	1	0	129	275	low	.	.	.	GAAAAAGCGGTCTGTGGTGTTGGACGAGATCCTGGAGCAGCTGGAAGGCAGTGACAGCGACAGCGAGGAGCAGACCCTTCAGCTGTGAGCTGGCACCGAGAGG|TCACAGTGGAGAGGATACAAGCAGAAGAAGGCATATCAAGATCGGTTAGCTTACCTGCGCTCCCACAAAGATGAAGTTGTAAAG___ATTCAGTCCCTGGCAAGGATGCACCAAGCTCGAAAGCGCTATCGAGATCGCCTGCAGTACTTCCGG	out-of-frame	KKRSVVLDEILEQLEGSDSDSEEQTLQL*agter|SQWRGYKQKKAYQDRLAYLRSHKDEVVKIQSLARMHQARKRYRDRLQYF	.
TALL057	BRF1	PACS2	-/-	+/+	14:105241265	14:105348493	splice-site	splice-site	inversion	upstream	upstream	1	0	0	62	115	low	.	.	duplicates(1)	CGCAGACCCGTGCCTGTATATTCCACGCTTTGCGCACCTGCTGGAATTCGGGGAGAAGAACCACGAGGTGTCCATGACTGCCCTGAGGCTCCTACAGAGGATGAAGCGGGACTGGATGCACACAGGCCGGCGCCCCTCGGGCCTCTGCGGAGCAG|GTTGTGCAGCCTGACTCTGAAGAAG	out-of-frame	MTALRLLQRMKRDWMHTGRRPSGLCGA|gcaa*	.
TALL057	BRF1	PACS2	-/-	+/+	14:105252507	14:105348493	splice-site	splice-site	inversion	upstream	upstream	0	1	0	53	115	low	.	.	duplicates(1)	CTTGGAAAGACGTTTCTTCTCTTGGCAAGAGAGCTCTGCATCAATGCGCCGGCCATAG|GTTGTGCAGCCTGACTCTGAAGAAGCTGGTGGTCTTCAAGGAGCTGGAGAAGGAGCTGATCTCCGTGGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACCCCGGCTGTGGCTGGGTGCTGTGTAGGCTTTCCATGTGCCTGGGAG	out-of-frame	LGKTFLLLARELCINAPAI|gcaa*	.
TALL057	RBL1	RBM39	-/-	-/-	20:37056146	20:35725155	splice-site	splice-site	deletion	upstream	downstream	1	0	0	135	2381	low	.	.	duplicates(1)	GCACCAAGTGACCAACTTATAAATATTTTTGA___ATCTTGTGTGCGTAATCCTGTGGAAAACATTATGAAAATACTAAAAGGAATAGGAGAGACTTTCTGTCAACACTATACTCAATCAACAGATGAACAGCCAGGATCTCACATAG|AGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGCGGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCT	out-of-frame	APSDQLINIFESCVRNPVENIMKILKGIGETFCQHYTQSTDEQPGSHI|enllii*	.
TALL057	PPM1K	GNAS	-/-	+/+	4:88284406	20:58903528	splice-site	splice-site	translocation	upstream	upstream	1	0	0	135	9596	low	.	.	.	GCTTTGACTGCTTGCTTCGGAGATCCGAGACGACGGAGAAGGCACTCTTATTTACCGACCAAGAAAGCTCCTCCCCCGTCCTCCGTTAGCTAATTAAAACATTTTTCAGGGACGTAGCCATCCAGAG|CAGTGAGAAGGCAACCAAAGTGCAGGACATCAAAAACAACCTGAAAGAGGCG	.	.	.
TALL057	AP3D1	CSNK1G2	-/-	+/+	19:2151239	19:1969508	splice-site	splice-site	inversion	upstream	upstream	1	0	0	114	581	low	.	.	.	CCGGGCCCCCTCACGGCGCCCAGCCGCGGGCCTCCCGAGGCAAAAGCCCGTGGGCCGCCGCGATGGCCCTCAAGATGGTGAAGGGCAGCATCGACCGCATGTTCGACAAGAATCTGCAGGACTTGGTCCGCGGCATCCGTAACCACAAGGAGGACGAG|CTGTGAGCCGTGAGCTTTGAG	out-of-frame	MALKMVKGSIDRMFDKNLQDLVRGIRNHKEDE|l*	.
TALL057	CCDC90B	IFI44	-/-	+/+	11:83273647	1:78663765	splice-site	splice-site	translocation	upstream	upstream	0	1	0	242	1057	low	.	.	duplicates(1)	GTTTACAGATCAAGAAAAGCAACTTATGGAAACAACTACAGAATTTACAAAAAAG|GGAATCTAAGGGAGGAAATTATCAACTGTGCACAAGGAAAAAAATAGATATGTGAAAGGTTCACGTAAATTTCCTCACATCACAGAAGATTAAAATTCAGAAAGGAGAAAACACAGACCAAAGAGAAGTATCTAAGACCAAAG	out-of-frame	LQIKKSNLWKQLQNLQKr|eskggnyqlctrkkidm*	.
TALL059	TCF7	SPI1	+/+	-/-	5:134138164	11:47360040	splice-site	splice-site	translocation	downstream	downstream	229	300	186	1602	1761	high	.	.	duplicates(231),mismappers(4),mismatches(29)	GGCGCGCCGGACGAGCTGCTGGCCTTCCAGGATGAAGGCGAGGAGCAGGACGACAAGAGCCGCGACAGCGCCGCCGGTCCCGAGCGCGACCTGGCCGAGCTCAAGTCGTCGCTCGTGAACGAGTCCGAGGGCGCGGCCGGCGGCGCAGGGATCCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGATGGCGCGCGCGCTGCGCAACTACGGCAAGgCGGG	in-frame	GAPDELLAFQDEGEEQDDKSRDSAAGPERDLAELKSSLVNESEGAAGGAGIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQ|dHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKa	.
TALL059	TCF7	SPI1	+/+	-/-	5:134116033	11:47359006	splice-site	splice-site	translocation	downstream	downstream	1	2	14	1783	1926	high	.	.	duplicates(3)	CGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___...CAG...___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGATGGCGCGCGCGCTGCGCAACTACGGC	in-frame	MYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|VSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNY	.
TALL059	TCF7	SPI1	+/+	-/-	5:134116033	11:47360040	splice-site	splice-site	translocation	downstream	downstream	1	3	109	1783	1761	medium	.	.	duplicates(37),mismatches(1)	CCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAGGTGGGGCACCTGGCCCTCCACCCTGGCCCCGACCCTGGCCGTGTCTGTGCCCTG	out-of-frame	PGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|titgtstpttctassrasprttsrssracsprscssstatwswsrctssippwchpipvlatrsptcpgcassthpcpqpspaqmrrrasgraphwrcltarrmawspglgsclgrqvghlalhpgpdpgrvca	.
TALL059	TCF7	SPI1	+/+	-/-	5:134138164	11:47355546	splice-site	splice-site	translocation	downstream	downstream	1	2	8	1602	1878	medium	.	.	duplicates(5),mismatches(1)	CCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGATGGCGCGCGCGCTGCGCAACTACGGCAAGACGGGCGAGGTCAAGAAGGTGAAGAAGAAGCTCACCTACCAGTTCAGCGGCGAAGTGCTGGGCCGCGGGGGCCTGGCCGAGCGGCGCCACCCGCCCCACTGAG	in-frame	PPPSGAGQHPQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQ|gSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVKKKLTYQFSGEVLGRGGLAERRHPPH*	.
TALL059	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	11	32	9	204	115	high	.	.	duplicates(24),low_entropy(1),mismatches(6)	TTCTTGGCTGTTTGG___...GCCAGGGCCAAG___...GCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC...___...GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCC	.	.	.
TALL059	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482895	17:4483875	intron	intron	duplication	upstream	downstream	2	5	4	160	237	high	.	.	duplicates(2),mismatches(1)	.	.	.	.
TALL059	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	5	4	1	97	67	high	.	.	duplicates(6),low_entropy(1)	CCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTGGCAGAAG	.	.	.
TALL059	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	18	51	17	265	148	medium	.	.	duplicates(48),low_entropy(1),mismappers(3),mismatches(5)	GAAGCCGCGGACCCTCCTG___GCGGAATTCTCCACGAGTTTTGAGCAGCCTCGGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG___...GCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGGGTAGAGATACA	.	.	.
TALL059	SPNS3	RP13-580F15.2	+/.	-/.	17:4482895	17:4483875	intron	intron	duplication/3'-3'	upstream	downstream	2	5	4	160	237	medium	.	.	duplicates(2),mismatches(1)	.	.	.	.
TALL059	OAZ1	TCF3	+/+	-/-	19:2269744	19:1650287	splice-site	splice-site	inversion	downstream	downstream	1	1	2	2749	407	medium	.	.	duplicates(3)	GCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATG___ATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGGCCCGCCTCCCTGGCCGGGGCGCAGTTCGGAGGTTCAG___GTCTTGAGGACCGGCCCAGCTCAGGCTCCTGGGGCAGCGGCGACCAG	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|vsrpevpalapge*	.
TALL059	LLfos-48D6.2	TCF3	+/+	-/-	19:2269744	19:1650287	splice-site	splice-site	inversion	downstream	downstream	1	1	2	2749	407	medium	.	.	duplicates(3)	GCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATG___ATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGGCCCGCCTCCCTGGCCGGGGCGCAGTTCGGAGGTTCAG___GTCTTGAGGACCGGCCCAGCTCAGGCTCCTGGGGCAGCGGCGACCAG	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|vsrpevpalapge*	.
TALL059	BSG	DAZAP1	+/+	+/+	19:572701	19:1417500	splice-site	splice-site	deletion	downstream	upstream	0	3	0	858	922	medium	.	.	duplicates(2)	TAGGAATCATGGCGGCTGCGCTGTTCGTGCTGCTGGGATTCGCGCTGCTGGGCACCCACGGAGCCTCCGGGGCTG|GAAGCTCTTCGTGGGCGGTCTTGACTGGAGCACGACCCAAG___AGACTCTGCGCAGCTACTTTTCCCAATATGGAGAAGTCGTAGATTGTGTTATCATGAAAGATAAAACCACCAACCAGTCTCGAGGCTTTGGGTTTGTCAAATTTAAAGACCCAAACTGTGTGGGGACGGTGCTGGCCAGCAGACCGC	out-of-frame	MAAALFVLLGFALLGTHGASGA|gssswavltgarpkrlcaatfpnmeks*	.
TALL059	TIMM17A	TIMM17A	+/+	+/+	1:201963118	1:201958065	exon	intron	duplication	downstream	upstream	0	2	1	24	25	medium	.	.	duplicates(2)	GGTAAGTAAAGCTATGAAAGAAAAGAAGAACGAAAGAGGAAGCAGAGTAGTTTGATTTTGTTTATTGCTGCTTAAACCAGAGAGATATGTTATTCTGGAAGGGTGATTTGCTTGTTTTTACACAT...TTTTTTGTTTGTTTGAGATGGAGTGTCGCTCTTGTTGCCC|AGGCGGAGGTTGCAGTGAGCCAAGATCATGCCATTGCACTCCATCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAACCTCAGGTTCGTGAGTCAGGACCGATAGCTTCTGAGGTAACATAAAGCTGAAGAGAATGTGATCTGAAGGATTGGGGTTTCATGCAGGAGAAACCCATCAAGCCGATTGGGCTCTTCTCCAAGGTTGGTTTTGGGACATTGTGC	.	.	.
TALL059	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	6	122	660	low	.	.	duplicates(3)	CCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGT...___AATGAAAATGA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL059	IL10RB	IL10RB(10951),AP000295.10(1306)	+/+	./+	21:33288261	21:33308185	splice-site	intergenic	deletion/read-through	downstream	upstream	5	0	1	107	9	low	.	.	duplicates(6)	GGACAACTTATTGTGTTCAAGTTCGAGGGTTTCTTCCTGATCGGAACAAAGCTGGGGAATGGAGTGAGCCTGTCTGTGAGCAAACAACCCATGACG___AAACGGTCCCCTCCTGGATGGTGGCCGTCATCCTCATGGCCTCGGTCTTCATGGTCTGCCTGGCACTCCTCGGCTGCTTCGCCTTGCTGTGGTGCGTTTACAAGAAGACAAAGTACGCCTTCTCCCCTAGGAATTCTCTTCCACAGCACCTGAAAGAG|CTCTCTGGCATCAATTTTTCCACTTCTCAGAAACACTTTGGCCCACAAATTCCCAAAGGAACCTTGTTCTTCATTCTGGAAA	out-of-frame	TTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE|lsginfstsqkhfgpqipkgtlffile	.
TALL059	EEF1A1P6	FAM126A	-/-	-/-	7:22511807	7:22908067	exon	intron	deletion/read-through	downstream	upstream	0	0	6	1378	0	low	.	.	low_entropy(2),mismatches(4)	...GCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGaGACTTtATCAAAAACATGATTACAGGGACATCTCAGGC...CCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGA|...GGACTTAAAGGAGG	.	.	.
TALL059	TRIO	EEF1A1P13	+/+	-/+	5:14462821	5:14652043	CDS	exon	deletion/read-through/5'-5'	downstream	upstream	0	0	5	11	24	low	.	.	duplicates(4),low_entropy(3),mismappers(2),mismatches(17)	GGGATGCAGAGCT...|...ATCACGAACAGCAAAGCGACCCAAAGGTGGATAGTCTGAGAAGCTCTCAaCACACATGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCaGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAACGGCGATCAA...GCATGCAATgTGAGCCGTGTGGCAATCCAATACAGGGGCATAGCCgGCGCTTATTTGGCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGTCATTTTTGC	.	.	.
TALL059	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	4	0	22	22	low	.	.	duplicates(1),low_entropy(1)	CCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAG	.	.	.
TALL059	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	4	0	19	435	low	.	.	duplicates(4),low_entropy(1)	GGCTACAGCAGGGTGAGCAGCCGGAAGAGGGGCAGGAAGTGGAGACAGAAAGGTTGCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCACACTGCCCTGCACAGCAGCTCCTCTTACAGGGAGGCG___GGGTTCTCCAGGACAAGGACCTCTTCTCTGTCTTCGCTGATCCaAATATGCT	.	.	.
TALL059	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74458896	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	19	472	low	.	.	duplicates(2)	CTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|GGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCACCTGGCGGTGAAGCTGGCTGACCAGCCACTTACTCCAAAGTCTATTCTTCGGTTGCCAGAG...ATTTCTGAAGCAGCTTATTGCTGGCAAACTCCAGGAGTCTGTTCCAGACCCTGAGCTGATTG___ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCAC	.	.	.
TALL059	ISCA1P6	HS6ST1	-/-	-/-	2:128518702	2:128317723	3'UTR	intron	deletion/read-through	upstream	downstream	4	0	0	15	51	low	.	.	duplicates(4),low_entropy(1),mismatches(1)	CGCCCGCCGTGTCCATGGAGAGAGGCTGAGGCGGCCGgCCTCCaGCCCGAcGCACCGGGGCATCGGGACGGCGAAGATGTCGGCTTCCTTAGTCCGcGCAACTGTCCAGGCTGTGAGC...CCTGACACCTTCAGCAGTAAACAAGATAAAACAACTTCTTAAAGATAAGCCTGAGCATtTAGGTGTAAAAGTTGGTGTCCGAACCAGGGGCTGTAATGGCCTTTgTTATAgTCTAGAATATAC...CCCAAACATCAAAGGGACTTGTGGCTGTGGAGAAAGCTTTAATATTTGAAATCTCAGGACTCTTCTGGCCGTAGGTTCCAGGAAAGCTGGTGGAAGCTTTGGGGTTCAATGCAGAAATCATGTGACTGTCACGTG|CTGCTGTGCGCCGTGAGGTCTGGCCCGCCGGACTTGGGGACGCGGGCTTCTGGGTGTGTGCGTGGCCTACCTGGAGTGTTGGCTTCCCCGTGCCGCTTCGGTGCTGTGGTCCCAAAA	.	.	.
TALL059	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	1	1	2	10	148	low	.	.	duplicates(4),low_entropy(1)	TACATGTACAGCCAACTTCCTTGAGGGTTCGTTCTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL059	EEF1A1P6	DNAH11	-/-	+/-	7:22511514	7:21894122	exon	intron	deletion/5'-5'	upstream	downstream	0	0	4	5317	5	low	.	.	duplicates(2),low_entropy(2),mismappers(1),mismatches(13)	TGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGaGACTTtATCAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCCTAC...|...GAAGTCAGGAGTTCGAGACCAGCCTGG	.	.	.
TALL059	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	1	62	8	low	.	.	duplicates(1),mismatches(1)	AGAG___CACCCGCCGAGGCCCGAGTACCAGTCTCCGTTTCTGCAGAGCGCCCAGTTCCTCTTCGGCCACTACTACTTTGACTACCTGGGGAACCTCATCGCCCTGGCAAACCTGGTGTCCATTTGC___GT...GCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGcCATG...GTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGT	out-of-frame	FRFLRIIPSMK|*	.
TALL059	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	0	0	238	20	low	.	.	duplicates(2),mismappers(2)	CTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGT...CGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAG	.	.	.
TALL059	IKBKG	CTAG1A	+/+	+/+	X:154564020	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	150	5	low	.	.	duplicates(2)	CGAGAAGAAGGAGCTCCTGCAGGAGCAGCTGGAGCAGCTGCAGAGGGAGTACAGCAAACTGAAGGCCAGCTGTCAGGAGTCGGCCAG___GATCGAGGACATGAGGAAGCGGCATGTCGAGGTCTCCCAGGCCCCCTTGCCCCCCGCCCCTG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGC	out-of-frame	EKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRHVEVSQAPLPPAP|ad*	.
TALL059	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	3	0	48	6	low	.	.	duplicates(2)	GGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTC	.	.	.
TALL059	AC004967.7	ASNS	-/-	-/-	7:97972135	7:97937160	splice-site	intron	deletion/read-through	upstream	downstream	0	2	1	274	262	low	.	.	duplicates(1)	GGGGACCCGGtCGGGATGGCTGCAGCGGCGGCCGGGGCTGGGAGCGGGCCCTCGGCGGCCCAGGAGAAGCAGTTCCTGCCGGCGCTGCTGAGTTTCTTCATCTACAACCCGCGCTTCTGGCCGCGGGAAGGAGAG|ACCTCCCAGTGCCAAGTGTATAAGCGTGTCCAGAATTGGTGGGTCTCACTGACTTCAgGAATGAAGCCGCGGACCCTCCTG___GCGGAATTCTCCACGAGTTTTG...ATTT-CTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGG...GTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAG	.	.	.
TALL059	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	1	1	1	52	223	low	.	.	low_entropy(1)	GCAGTCTATAACTGA___AAATGTGGTAAAGTACTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGT...AACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTT...CCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATTTGTAT	.	.	.
TALL059	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511839	7:23337781	exon	intron	deletion	downstream	upstream	0	0	3	1363	0	low	.	.	duplicates(1),mismappers(1),mismatches(10)	.	.	.	.
TALL059	ACCS	EXT2	+/+	+/+	11:44083311	11:44106655	splice-site	intron	deletion/read-through	downstream	upstream	0	0	2	34	1	low	.	.	duplicates(1),mismappers(1)	AGAAAACCAGGATGTGGCCACTGCCGTGGCTTCCCTCTGCCGCTACCACGGCCTCAGTGGCTTGGTCCAGTACCAGATGGCACAGCTGCTCCGGGACCGTG___ACTGGATCAACCAGGTGTACCTGCC...GGCTTCTTCATCTGGGTTGACTTGAGAAAG|g|GTCTTGCTCTGTCACTTGGGCTGGAGTGCAGTGGCgCGATCTCGGCTCACCGCAACCTCCACCTCCTGGATTCAgGCAATTCTCCTGCCTCAGCCTCCCAACTAGCTGGGATTACAG___GAGTGTGAGGAAGAGGCTGTCTGTGTCATTATGTGTG	out-of-frame	GFFIWVDLRK|glalslglecsgaisahrnlhlldsgnspasasqlagitgv*	.
TALL059	AL589822.1(1109),AGAP7P(44746)	MSMB	./-	-/-	10:46064875	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	0	0	2	2	9	low	.	.	mismappers(2)	CATGGCTCCATTGGAGCCTCAACCTCCCAGGCTCAAGTGATGTTCCCgCCTCAGCCTCCTGAGTATCTGGGACTAAAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCC	.	.	.
TALL059	PRKCH	PCDH10	+/+	+/+	14:61550425	4:133149717	3'UTR	5'UTR	translocation	downstream	upstream	0	0	2	9	33	low	.	.	duplicates(2)	TTTTAAGGAAATGAAGGGCTTTCCAAATAGAATGATTTACTCTGAAGAAACAAACAATGGTATCTCTGAAACTCACAACCTAAAGCCCAATCTTGAAAATATGTTGTGCACCAAGACGACTGCTTC...|...CCTCCTCCTCCTCTTTTTCCTCCTCCTCGTTCTCCTCCCATCAGCAAGAAGACAAACCGAGGACAGTCTTGAAATATCGAAATTTCCTCTTTGGGATTTGCCAGCGCCAAGACTGTCGGAATAAAG	.	.	.
TALL059	EEF1A1P13	DNAH5	-/-	-/-	5:14652444	5:13875999	exon	intron	deletion	upstream	downstream	0	0	2	6	1	low	.	.	duplicates(1),mismappers(1),mismatches(3)	CAAAATTGGTGGTATTGGTAcTGTTCCTGTTGGCCGAGTGGAGACTGGTgTTCTCAAACCCGaTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACgGAAGTAAAATCTGTCGAAATGC...|...TTTCCCAGTGTTTAAGGAATAGT	.	.	.
TALL059	LRRC27	ESF1	+/+	-/-	10:132352482	20:13782580	intron	CDS	translocation	downstream	downstream	0	0	2	4	99	low	.	.	.	TCCGTGTGGGGCAGGCGCAG___GTGCAGCGCTCCGTGTGGGGCAGGCGCTGAGGCCTCCGTGTGGGGCAG___GCGCAGGTGCAGCGCTCCGTGTGGGGCAGGCGCTGAGGCCTCCGTGTGGG...|...ATTAGACTCAGGCACCTCTGAAATTGTGAAATCTCCCAGAATCGAGTGTTCTAAGACAAGAAGAGAAATGCAATCAG___TGGTTCAACTCATAATGACAAGAGACAGTGATGGTTATGAAAACTCAAC	.	.	.
TALL059	C12orf42	RP11-328J6.1	-/-	-/-	12:103262469	12:103178200	exon	intron	deletion/read-through	upstream	downstream	0	0	2	3	1	low	.	.	mismappers(1)	CTTTCCTGCACTTCCTGGCTCCTCAG___ATTTTGTTTAAATATAAGAACTGGAAAACCAAAG___GTGACTGTTTAGCTTGGCCATTTGCTGCTCCTACCTCAAATAGAAG___G...|...AGGCGACTTCTTGGCAGATACTGCATCTTCAGCCAGGAGAAGTTGGCTTAGTACAAAAGGGCTTTTGAAGCG___GAAACTACAAGAAGATGCATCTGTCTTAACAAAAAATAATAAACCAAGAAAATAAAAGATATGGGATCCTAGAAATAAAAGGTGCAACACAAGAG	.	.	.
TALL059	NF2	CABP7	+/+	+/+	22:29683064	22:29727662	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	8	3	low	.	.	low_entropy(1)	AAAAG___CCTCAAGCCCAAGGCAGAAGACCTATCTGCATTTGAGCCCTCAAA|AGATCCGAGAGGCCTTCAAGGTGTTTGACCGTGACGGCAATGGCTTCATCTCCAAGCAGGAGCTGGGCACAGCCATGCGCTCACTGGGTTACATGCCCAACGAGGTGGAGCTGGAGGTCATCATCCAGCGGCTGGACATGGATG___GTGATGGTCAAGTGGACTTTGAGGAGTTTGTGACCCTTCTGGGACCCAAACTCTCCACCTCAGGGATCCCAGAGAAGTTCCATGGCACCGACTTTGAT	out-of-frame	KPQAQGRRPICI*alk|rserpsrcltvtamasspsrswaqpcahwvtcptrwswrssssgwtwmvmvkwtlrsl*	.
TALL059	SBK1	PPP2R3B	+/+	-/-	16:28319197	X:361590	splice-site	splice-site	translocation	downstream	downstream	2	0	0	107	265	low	.	.	duplicates(4)	ATCACCAACAGCCTCTCCTCCAGCCCCTTCATCATCAAGGTCTTTGACGTGGTCTTTGAGACAGAGGACTGCTACGTCTTTGCCCAGGAGTACGCACCTGCTGGGGACCTGTTTGACATCATCCCTCCCCAG|GTTCAGACACGGAAAGAAGAGCCTCTGCCCCCGGCCACGAGCCAAAGCATTCCGACCTTCTACTTCCC	in-frame	ITNSLSSSPFIIKVFDVVFETEDCYVFAQEYAPAGDLFDIIPPQ|VQTRKEEPLPPATSQSIPTFYF	.
TALL059	PLD4	AKT1	+/+	-/-	14:104932355	14:104780216	splice-site	splice-site	inversion	downstream	downstream	0	2	0	11	457	low	.	.	duplicates(2)	CCGGTGGGGAACCATTCCAACATCCCATTCAGCAGGGTGAACCACAGCAAGTTCATGGTCACGGAGAAGGCAGCCTACATAG|GGGAGTACATCAAGACCTGGCGGCCACGCTACTTCCTCCTCAAGAATGATGGCACCTTCAT...GTGGACCAACGTGAGGCTCCCCTCAACAACTTCTCTGTGGCGC___AGTGCCAGCTGATGAAGACGGAGCGGCCCCGGCCCAACACCTTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAACG...CG___GGAGGAGTGGACAACCGCCATCCAGACTGTGGCTGACGGCCTCAAGAAGCAGGAGGAGGAGGAGATGGACTTCCGGTCGGGCTCACCCAGTGACAACTCAGGGGCTGAAGAGATGGAGGTGTCC	in-frame	PVGNHSNIPFSRVNHSKFMVTEKAAYI|gEYIKTWRPRYFLLKNDGTF	.
TALL059	C19orf25	CSNK1G2	-/-	+/+	19:1478774	19:1969508	splice-site	splice-site	inversion	upstream	upstream	0	1	1	66	711	low	.	.	.	GTCGACGCTGGGCTTTCGGGTCCCGCGCCCAG___AGATGGGCTCCAAGGCAAAGAAGCGCGTGCTGCTGCCCACCCGCCCAGCGCCCCCCACGGTGGAGCAGATCCTGGAGGATGTGCGGGGTGCGCCGGCAGAGGATCCAGTGTTCACCATCCTGGCCCCGGAAG|CTGTGAGCCGTGAGCTTTGAGGCGGTGGGATGTGTCAGCAGAATGTCTCCTGCCCC...GCGGCCTGGCCGGCCCGAACGCCTGCGTCTCAGTAGCTGGGAGCCACGGGCCCACGCCCGCCCACCGGCCGCAGTGATGTTCTAGCCACAGAGGAGCCAAGACCTCAGGTTTCCAGAGACTTGGGATTTGCACGGCAGCAGAGTCACCGTGGAGAGGC	out-of-frame	MGSKAKKRVLLPTRPAPPTVEQILEDVRGAPAEDPVFTILAPE|avsrel*	.
TALL059	TIMM13	TCF3	-/-	-/-	19:2427256	19:1650287	splice-site	splice-site	deletion	upstream	downstream	1	1	0	880	407	low	.	.	duplicates(3)	AGCAGGTGAAAGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCTGCAG___AGGATGACGGACAAGTGTTTCCGGAAGTGTATAGGGAAACCTGGGGGCTCCCTGGACAACTCCGAGCAG|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATG___ATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGG	out-of-frame	QVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQ|gfqa*	.
TALL059	GRAMD4	CERK	+/+	-/-	22:46675552	22:46721015	splice-site	splice-site	inversion	downstream	downstream	1	0	1	573	240	low	.	.	.	GTCAGGTCAGAGGCTGGGTACTTCCAGTGGAAAGTGTGACAGGCGGGCCTTCTCCCATTAGTGTGCGAGAATGaCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGACTACATC...GAGAA___TTACTTGTGCTTCGAAAGCTCCAAATCTGGGTCCTCAAAGAGGAACAAAGTCATCAAGCTAGTGGACATCACGGACATCCAGAAG|ATGCCTGCTCTGTGCCTGTATCTGAGATCATCGCCG	out-of-frame	ENYLCFESSKSGSSKRNKVIKLVDITDIQK|mpalclylrss	.
TALL059	KAT6A	SLC20A2	-/-	-/-	8:42051901	8:42472654	splice-site	splice-site	duplication	upstream	downstream	0	1	0	70	59	low	.	.	duplicates(1)	GCGGCCGTGTCAGTTTGGGGCATCTCCGCGGTCCGGCCCGGGGCCCCGGGATCTCGGCTGTCCTTCCTCCCG|GAGGAGACATCACAGCTTTCCCAGATCGGGAGGAAAAATATGGAATGTGTTTTACCGCTGACTGAACACAACCAAATGAACTGTCCTGACAGTAGTTTGCAAACCAGCAGCTAGCAGTTTGTCCAGCCTCTAACATTGTCCAGCACTTTCCAG	.	.	.
TALL059	HDAC4	SNHG7	-/-	-/-	2:239236593	9:136725110	splice-site	splice-site	translocation	upstream	downstream	1	0	0	82	909	low	.	.	duplicates(1)	CGGCGCCGAACGCCCTGAGAAAAACGCCTTTGGAGCAGTTTCCGGGATTAAGCGAAAGTCTGGGCTGAAG___ATGGACTTTCTGGCCGAGACCAGCCAGTGGAGCTGCTGAATCCTGCCCGCGTGAACCACATGCCCAGCACGG|ATGCAGAGGCCAGGATGTGGGCCCAGCCCTGTGCCAGGAGGCTGGCTGGAATAAAG	out-of-frame	rrrtp*ekrlwssfrd*akvwaeDGLSGRDQPVELLNPARVNHMPST|daearmwaqpcarrlagi	.
TALL059	SETD2	MAP4	-/-	-/-	3:47113876	3:47857512	splice-site	splice-site	duplication	upstream	downstream	0	1	0	147	340	low	.	.	duplicates(1)	CGGTTTCAGAGAAAACAGCATGCAGATGTGGAAGTCATACTCACAGAAAAGAAAGGCTGGGGCTTGAGAGCTGCCAAAGACCTTCCTTC|GTTCAGATTCAGAACAAGAAAGTGGACATCTCTAAGG...TGAACTTCAAGGAGAAGGCCCAGGCCAAGGTGGGATCCCTCGATAATGTGGGCCACCTACCTGCAGGAGGTGCTGTGAAG___ATTGAGACCTACAGGCTGACGTTCCGGGCAAATGCCAGGGCCCGC	out-of-frame	RFQRKQHADVEVILTEKKGWGLRAAKDLPs|frfrtrkwtsl	.
TALL059	PPP2R3B	CLPTM1L	-/-	-/-	X:345516	5:1318453	splice-site	splice-site	translocation	upstream	downstream	1	0	0	358	446	low	.	.	.	GAACACGCACCCGGGGCTGTCGTTCCTGAAGGAGGCGTCCGAGTTCCACTCGCGCTACATCACCAC...CCTGCTCATCGACGCGGACGACCTGGCGCGGCACAATGACCACG|GCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGGCCACGCGGGCGCC	out-of-frame	LLIDADDLARHNDH|gfilwinae*	.
TALL059	SIN3A	C15orf39	-/-	+/+	15:75451423	15:75205999	splice-site	splice-site	inversion	upstream	upstream	1	0	0	142	194	low	.	.	.	GCGGAGACGGTTTCTCCATCTTCCCCCCTCCCCTTCCCCCCTCGGgGTTT...CACGCTGAGAGGGACACGCAGTGACGAGCGGCCGAAGCAGCTTTGCG|GTCAGAAGTTGAGTAGCAGGGGCCTAGGAGGGCTCGAAGCCTTCACAGCGATGGCAGAGAAGCGACCCCTGAGAACCC	.	.	.
TALL059	GNG7	MBD3	-/-	-/-	19:2702646	19:1585214	splice-site	splice-site	deletion	upstream	downstream	0	1	0	131	155	low	.	.	.	GCGAGCGCTCGCGGGCCGGGGCGGAGGGTTCGGCTGCGCGGCGGGGCTGAGGCGGCCGCGGGGCCCGAGCGCAG|CCCGAGCGGGAAGAAGTTCCGCAGCAAGCCGCAGCTGGCGCGCTACCTGGG...GCCAGCGCGTGCGCTACGACTCCTCCAACCAGGTCAAG___GGCAAGCCCGACCTGAACACGGCGCTGCCCGTGCGCCAGACGGCGTCCATCTTCAAGCAGCCGGTGACCAAGATTACCAACCACCCC	.	.	.
TALL059	PHF12	SPTBN1	-/-	+/+	17:28950065	2:54612161	splice-site	splice-site	translocation	upstream	upstream	0	1	0	296	225	low	.	.	duplicates(1)	CTCCTGTGCTGCGACCACTGCCCGGCTGCCTTCCACCTCCAGTGCTG|CCTAAACCCACCAAGGGACGAATGCGCATCCACTGCTTAGAGAATGTGGACAAGGCCCTTCAGTTCCTGAAGGAGC...CATCTGGACCATCATCCTGCGCTTCCAG___ATCCAGGATATCAGTGTGGAAACTGAAGACAACAAAGAGAAGAAATCTGCCAAGGATGCATTGCTGTTGTGGTGCCAGATGAAGACAGCTGG___GTAC	out-of-frame	LLCCDHCPAAFHLQCc|lnpprdecasta*	.
TALL059	PQLC1	CTDP1	-/-	+/+	18:79919184	18:79736351	splice-site	exon	inversion	upstream	upstream	1	0	0	50	251	low	.	.	.	CTGGCAGTGGAGCAGCTTCTCGGACTACGTGCAGTGCGTCCTGGCCTTCACGGGCGTGGCGGGCTACATCACCTACCTGTCCATTGACTCCGCCCTGTTTGTGGAGACCCTGGGCTTCCTGGCTGTGCTGACCGAAGCCATGCTGGGTGTGCCCCAGCTTTACCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|TCAGGTGGACGACATCCTTGGAGAAGGCAGCGACGACAGCGAC	in-frame	WQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMs|qVDDILGEGSDDS	.
TALL059	GNG7	UQCR11	-/-	-/-	19:2702646	19:1585214	splice-site	splice-site	deletion	upstream	downstream	0	1	0	131	155	low	.	.	.	GCGAGCGCTCGCGGGCCGGGGCGGAGGGTTCGGCTGCGCGGCGGGGCTGAGGCGGCCGCGGGGCCCGAGCGCAG|CCCGAGCGGGAAGAAGTTCCGCAGCAAGCCGCAGCTGGCGCGCTACCTGGG...GCCAGCGCGTGCGCTACGACTCCTCCAACCAGGTCAAG___GGCAAGCCCGACCTGAACACGGCGCTGCCCGTGCGCCAGACGGCGTCCATCTTCAAGCAGCCGGTGACCAAGATTACCAACCACCCC	.	.	.
TALL059	VAV1	CCDC57	+/+	-/-	19:6843166	17:82179189	splice-site	splice-site	translocation	downstream	downstream	0	1	0	653	167	low	.	.	duplicates(2)	GGCCCTCCTCAGGACCTGTCTGTTCATCTCTG|GTACAAGCAACAGCTGTCCCTGGCAGTGGAAAGGGAGCGGAGCCTGGAGCGTGATCAGGTGCAGCTGGGCCTGGACTGGCAGCGCCGCTGTGATGACATTGAAAGGGACCAGATCCAAAAGTCAGAGGCCCTGATTCAGGGTCTGAGCATGGCAAAAAGTCAG___GTTGCTGCCAAGCTGCA	in-frame	GPPQDLSVHLw|YKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKL	.
TALL059	CTBP1	MAEA	-/-	+/+	4:1238183	4:1332757	splice-site	splice-site	inversion	upstream	upstream	1	0	0	520	231	low	.	.	.	CCCGCGGCCCCTGGTGGCATTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCCATCCTGAAGGACGTGGCCACTGTGGCCTTCTGCGACGCGCAGTCCACGCAGGAGATCCATGAGAAG|ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGGACGAG	out-of-frame	PRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEK|tckkalqpsrrepagr	.
TALL059	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89102604	splice-site	splice-site	inversion	upstream	upstream	1	0	0	386	181	low	.	.	.	GCGGGGACCAAGCTGGAAGGAGCAGCGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GTGACCGGGCTGGTCCACAAGTGGGCATGGACCAAAGACGACGTGATCCTCCACGTGCTCCCGC	.	.	.
TALL059	CBFA2T3	ACSF3	-/-	+/+	16:88976657	16:89098591	splice-site	splice-site	inversion	upstream	upstream	1	0	0	38	88	low	.	.	.	CCAGGACGCCCCAGCTGGCCCAGCCCCTCCTCTTTCCCTCAAGGCTGCAGGAGGTCGGGAAAGGCAGTCCTGGTAGAGGCCTGTCCTGGGCTCCAGGTTGGCCCCTGAGGGTGGCCCTCCTCATGC...CCTGGCATCTGCCGGCTGCTCCGCACCCCGGGGTCCCAGGAAGGGCGGCCCAG|GTGTCCCACCGGCCTTCCGGGTTCCAGCGCCAGGCCTGGTGCCTGCCCCAGGAGGATGAGCATTTGCATTGCC	out-of-frame	LASAGCSAPRGPRKGGP|gvppafrvpapglvpapgg*	.
TALL060	TCF7	SPI1	+/+	-/-	5:134138164	11:47360040	splice-site	splice-site	translocation	downstream	downstream	182	300	46	1303	1768	high	.	.	duplicates(41),mismappers(2),mismatches(66)	GCGCCGCCGGTCCCGAGCGCtACCTGGCCGAGCTCAAGTCGTCGCT...GCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___...GCCTTCAGGAGACAGAATTGGCCAAG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCA	in-frame	psgdrigqGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQ|dHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTF	.
TALL060	TCF7	SPI1	+/+	-/-	5:134116033	11:47360040	splice-site	splice-site	translocation	downstream	downstream	23	18	22	1591	1768	high	.	.	duplicates(2),mismappers(2),mismatches(5)	CGGCCGGCGGCGCAGGGATCCCGGGGGTCCCGGGGGCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGA	out-of-frame	AGGAGIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|titgtstpttctassrasprttsrssracsprscssstatwswsrctssippwchpipvlatrsptcpgcassthpcpqpspaqmrrrasgraphwrcltarrmawspglgsclgrqaarr	.
TALL060	TCF7	SPI1	+/+	-/-	5:134138237	11:47360040	splice-site	splice-site	translocation	downstream	downstream	3	4	47	33	1768	high	.	.	duplicates(1),mismatches(4)	CTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAGGTACAAGCCTGGGATGGGGAGGGGCCCAGTGAAACCAGAGCCTAAGGGCCAAGACCCCAGCTTCTGAGACCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGG	out-of-frame	SGAGQHPQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQgtslgwggaq*nqslraktpasetr|pllglppppraqrvrelrreqlhgaperaapaaaaalpphgagadarpryphgatpsqswppgllpapdvppvpipvpspaqlr*	.
TALL060	TCF7	SPI1	+/+	-/-	5:134116086	11:47360040	splice-site	splice-site	translocation	downstream	downstream	0	1	22	59	1768	medium	.	.	mismatches(4)	GCCGGCGCCGGGGCCCGCGGCGAGGCCGAG___GCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___...CAGAATTGGCCAAG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTGGTAAGTGGACCCCGCAGCCAGTGCCGCCCTGTGCTTGCAGCCTCCTTGACCAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGG	out-of-frame	MYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLVSGPRSQCRPVLAASLTr|pllglppppraqrvrelrreqlhgaperaapaaaaalpphgagadarpryphgatpsqswppgllpapdvppvpipvpspaqlr*	.
TALL060	TCF7	SPI1	+/+	-/-	5:134116033	11:47359006	splice-site	splice-site	translocation	downstream	downstream	3	1	1	1591	2397	medium	.	.	.	CCCGCGGTCCCACCGCCCCTCACTCCCCTCCGGTTCTCCCTCCAGGCTCTCGGGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCG	in-frame	pavpppltplrfslqALGREHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|VSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKI	.
TALL060	TCF7	SPI1	+/+	-/-	5:134116086	11:47359006	splice-site	splice-site	translocation	downstream	downstream	0	1	1	59	2397	medium	.	.	.	CCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTGGTAAGTGGACCCCGCAGCCAGTGCCGCCCTGTGCTTGCAGCCTCCTTGACCAG|GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGC...CAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAG___GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGA	out-of-frame	MYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLVSGPRSQCRPVLAASLTr|sptcpgcassthpcpqpsp	.
TALL060	TCF7	SPI1	+/+	-/-	5:134138164	11:47355546	splice-site	splice-site	translocation	downstream	downstream	1	1	0	1303	3083	medium	.	.	.	CGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|GCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGTTGGACCTGCTCCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGC	in-frame	QPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQ|gSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEAL	.
TALL060	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	5	10	1	44	43	high	.	.	low_entropy(2),mismatches(2)	TGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTG___...TGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGC...CCTGCTCAGCACCCCCTACCCCTTCGGCCTCgaCCCCAGCTCAGTTGTGCAGGATTCCCGCcTCCCGCCACTCAA___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCGAG	.	.	.
TALL060	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	4	11	0	58	23	high	.	.	mismatches(1)	AAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGG	.	.	.
TALL060	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	4	2	0	47	29	high	.	.	mismatches(1)	CTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGAC	.	.	.
TALL060	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	6	1	44	15	medium	.	.	mismatches(5)	CCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGAT	.	.	.
TALL060	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	3	0	237	23	medium	.	.	duplicates(1),mismappers(1),mismatches(1)	TGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGG...CCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTA	.	.	.
TALL060	IFT122	ZNF707	+/+	+/+	3:129476370	8:143689202	CDS	splice-site	translocation	downstream	upstream	2	0	0	32	12	medium	.	.	.	CCTGGCTGTGGCTGACTGGGGACAGAAAGTTTCCTTCTACCAGCTGAGTGGAAAACAG___ATTGGAAAGGATCtGGCACTGAACTTTGACCCCTGCTGCATCAGCTACTTTACTAA|AGTTGCTGAACCTGTTTGCATGAGTTGCTCCTGACGGCCCTTTAGGATACTTCCATGTCTGTAGGGTCTAGA	out-of-frame	LAVADWGQKVSFYQLSGKQIGKDlALNFDPCCISYFTk|vaepvcmscs*	.
TALL060	LCORL	CYB5B	-/-	+/+	4:17960265	16:69459093	exon	splice-site	translocation	upstream	upstream	2	0	0	6	352	medium	.	.	.	TCTCAGGGCCAGTCCAACACTGATAAGATTGAATGCCAAGCAGAAAATTACCTAAATGCACTCTTTCGAAAGAAAG___CTGATTCAAGCATCTGGGTCTCCAAGAGGTCTCCTACCAATGGTTGG|GACCCTTCAAAAAATGATACATGCAAAA	in-frame	SQGQSNTDKIECQAENYLNALFRKKadssiwvskrsptngw|DPSKNDTCK	.
TALL060	RAB11B-AS1	KIAA1551	-/-	+/+	19:8390009	12:31992378	splice-site	splice-site	translocation	upstream	upstream	0	2	0	51	240	medium	.	.	.	CTACCCGACTATCAGAGGACCTGTCCGGGAAGAGAAATGGGGCTACGTCCAG|ATAATGTTAATTCAAGACTCTCGAAGAGAAGCTTCAGTGCAGATGGATTTGAGATGCTACAAAACCCAGTAAAAGATTCAAAAGAAATGTTTCAAACCTACAAACAGATGTACCTGGAGAAGAGAAG	.	.	.
TALL060	EEF1A1P6	RAPGEF5	-/-	-/-	7:22510541	7:22337383	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	11	800	2	low	.	.	low_entropy(6),mismappers(2),mismatches(16)	CTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAAcGGTCTCAGAACTGTTTGTTTC...|...TGGCCTTTTAAGA	.	.	.
TALL060	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	1	162	410	low	.	.	mismatches(1)	GCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL060	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	40	410	low	.	.	duplicates(1),read_through(24)	CGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGC...TACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGgAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGAT	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL060	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	2	5	0	27	10	low	.	.	.	ATTTTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAAC...___TGTTTCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAGGACTGCAAGTATATCG	.	.	.
TALL060	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	6	0	16	880	low	.	.	low_entropy(2),mismappers(2),mismatches(2)	GGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCACACTGCCCTGCACAGCAGCTCC	.	.	.
TALL060	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74458896	splice-site	splice-site	deletion/read-through	upstream	downstream	0	5	0	16	614	low	.	.	low_entropy(1),mismatches(1)	AGGCGCCATACCGAGTACAGCCATGGAGACCACT|GGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCACCTGGCGGTGAAGCTGGCTGACCAGCCACTTACTCCAAAGTCTATTCTTCGGTTGCCAGAGACAGAACTGGGAGAATACTCGCTAGGGGGCTATAGTATTTCATTTCTGAAGCAGCTTATTGCTGGCAAACTCCAGGAGTCTGTTCCAGACCCTGAGCTGATTG___ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGG	.	.	.
TALL060	AC012501.2	GALNT13	-/+	+/+	2:153510977	2:153732769	intron	5'UTR	deletion/read-through/3'-3'	downstream	upstream	1	5	0	35	41	low	.	.	mismatches(2)	AGTTACCCAGCAAATACAAGCAGAAGGAGAGAGTGGGCCACTCTGTGGTATCTCGCAATGGAGCAGACACTGTTGGACAAGAGCAGATTCACTGGAGAG|GTAACAAGTTGGAAGACTTTGGATCTCAAGAAAAGTGGATTTTGCCTCTACCGTAGAGATAG___ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGTGCCACATACA___TGGAATGTATCCTGCTTTCATCTTGGAGTTCACCTGTGTGGCTTGGATTTATCA...GAAGGCTTTTG	.	.	.
TALL060	TASP1	RP4-585I14.3(406),TASP1(20283)	-/-	./-	20:13483227	20:13369109	splice-site	intergenic	deletion/read-through	upstream	downstream	4	2	0	247	27	low	.	.	.	CTGGAGCTCATAACCCCTACTCCACAGCT___GATGTGGAGAGCATCTTGTGCGCACCATACTGGCTAGAGAATGTTCACATGCTTTACAAGCTGAGGATGCTCACCAAGCCCTGTTGGAGACTATGCAAAACAAGTTTATCA|CTACCTGAAATCTTCATTTGGCATCACCATTACTTCAACCTCAAATACAAATGCAGAAAATGAAATTGCCTACTATGACTAGTaACAA	out-of-frame	GAHNPYSTADVESILCAPYWLENVHMLYKLRMLTKPCWRLCKTSLS|lpeifiwhhhyfnlkykcrk*	.
TALL060	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	97	158	low	.	.	mismatches(3)	TGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCT	.	.	.
TALL060	CTB-113I20.1(17107),TCF7(15564)	VDAC1	./-	-/-	5:134099147	5:133993018	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	1	58	540	low	.	.	duplicates(1)	GTAAGCCGGAGCCACCCTCCCCAAGCCAGACCCAACCAGATGCTGGCTTTTTTTGAcGGCCTAAATCACAGTCCACCCAAAGCCCTACTTTTAAGAGTCTGTGCTCGACCTGAAGCACACAGGCTGTGAGCTG|CAGAAGATGGCTGTGCCACCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAGGGCTATG___GATTTGGCTTAATAAAGCTTGATTTGAAAACAAAATCTGAGAATGGATTG___GAATTTACAAGCTCAGGCTCA...AAACCAAGTACAGATGGACTGAGTACGGCCTGACGTTTACAGAGAAATGGAATACCGACAATACACTAGGCACaGAGATTACTGTGGAAGATCAG___CTTGCACGTGGACTGAAGCTGACCTTCGAT	.	.	.
TALL060	ACTB	RNF216P1	-/-	+/-	7:5527624	7:4997753	3'UTR	exon	deletion/5'-5'	upstream	downstream	0	0	5	18238	57	low	.	.	duplicates(2),low_entropy(4),mismappers(11),mismatches(3)	G___ATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGGCGGACTATGACTTAGTTGCGTTACACCCTTTCTTGACAAAACCTAACTTGCGCAGAAAACAAGATGAGATTGGCATGGCTTTATTTGTTTTTTTTGTTTTGTTTTGGTTTTTTTTTTTTTTTT...|...TCGGTGAAGA	.	.	.
TALL060	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69079020	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	64	17	low	.	.	.	TCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACA	out-of-frame	NCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLL|*	.
TALL060	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	0	83	120	low	.	.	low_entropy(1)	TGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___GGACTCTGAGA	.	.	.
TALL060	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	3	1	0	31	26	low	.	.	mismappers(1)	CGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTG	out-of-frame	RDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGF	.
TALL060	IKBKG	CTAG1A	+/+	+/+	X:154556376	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	86	7	low	.	.	mismatches(1)	GGAGCTTCTGCATTTCCAAGCCAGCCAGAGGGAGGAGAAGGAGTTCCTCATGTGCAAGTTCCAGGAGGCCAGGAAACTGGTGGAGAGACTCGGCCTGGAGAAGCTCGATCTGAAGAGGCAGAAGGAGCAGGCTCTGCGGGAGGTGGAGCACCTGAAGAGATGCCAGCAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTCATTGTGGGGGCCTGATTGTTTG	out-of-frame	ELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQ|ptdccrppptaalhqllspaafpvdvdhavlsarvfgsaslraealspawrpflghassprewsqhewpvhcggliv	.
TALL060	IKBKG	CTAG1A	+/+	+/+	X:154552189	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	3	0	0	151	7	low	.	.	mismatches(1)	TGAATAGGCACCTCTGGAAGAGCCAACTGTGTGAGATGGTGCAGCCCAGTGGTGGCCCGGCAGCAGATCAGGACGTACTGGGCGAAGAGTCTCCTCTGGGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCG	out-of-frame	NRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQELR|ad*	.
TALL060	BTF3	ARHGEF28	+/+	+/+	5:73505352	5:73655138	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	4	7460	0	low	.	.	mismappers(2),mismatches(3)	CGAAGCTCTGCCCAAACAAT___CTGTGGATGGAAAAGCACCACTTGCTACTGGAGAGGATGATGATGATGAAGTTCCAG___ATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAGGCAAACTGAATTGAGTCAACTTCTGAAGATAAAACCTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACTGCTTTTTAAGAAATTTTTGTTTATGGATCTGATAAAATCTAGATCTCT...|...AAGCTCTTTTCA	.	.	.
TALL060	CD300A	CD300A(21228),CD300LB(15150)	+/+	./+	17:74481833	17:74506024	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	2	809	41	low	.	.	duplicates(1),low_entropy(1),mismatches(2)	CTCACA___GCTCCCGCTGCTCCTCTCCCTGCTGGCATTGTTGCTGCTTCTGTTGGTGGGGGCCTCCCTGCTAGCCTGGAGGATGTTTCAGAAATGGATCAAAG___CTGGTGACCATTCAGAGCTGTCCCAGAACCCCAAGCAG___GCTGCCACGCAGAGTGAGCTGCACTACGCAAATCTGGAGCTGCTGATGTGGCCTCTGCAGGAAAAGCCAGCACCACCAAGGGAGGTGGAGGTGGAATACAGCACTGTG|AAGACAGGAATGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATGTCCCCTGTGACCTGCACATATACATCCAGATGGCCTGAAGCAACTGAAGATCCACAAAAGAAGTGAAAATAGCCTTAACTGATGACATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATACGCTATATTCTCCCCTGCCCTTAAGAAGGTACTTTGTAATATTC	out-of-frame	SQLPLLLSLLALLLLLLVGASLLAWRMFQKWIKAGDHSELSQNPKQAATQSELHYANLELLMWPLQEKPAPPREVEVEYSTV|ktgmsgl*	.
TALL060	PLAC8	COPS4	-/-	+/-	4:83090874	4:83062686	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	1	2	1	3106	6	low	.	.	duplicates(136),low_entropy(60),mismatches(64)	CTTTCCTGTCCT...CAGGCCACAAGACATTTCCTGCTCGGAACCTTGTTTACTAATT___GTCTCTGTGGCACATTTTGTTTCCCGTGCCTTGGGTGTCAAGTTGCAGCTGATATGAATGAATGCTGTCTGTGTGGAACAAGCGTCGCAATGAGGACTCTCTACAGGACCCGATATGGCATCCCT___GGATCTATTTGTGATGACTATATGGCAACTCTTTGCTGTCCTCATTGTACTCTTTGCCAAATCAAGAGAGATATCAACAGAAGGAGAGCCATGCGTACTTTCTAAAAACTGATG___GTGAAAAGCTCTTACCGAAGCAACAAAATTCAGCAGACACCTCTTCAGCTTGAGTTCTTCACCATCTTTTGCAACTGAAATATGATGGATATGCTTAA|GGCACTTAAGAACACCCCCCAGACAGCGCTTCAGCACTATGGCTGGGTGCCATTTTAAACAGCAAAATCACTGGTAACAGAACGaAAGTGTGAAAAACATGATCTTA?AC?GACCATGAAAAGGACATTTGTGTACAGTATAAAAGTAAAAAAACAAGCAGGGAATCTACATGTTCAACCTCGGGTGGAAACATGTGTCAGGACATTCAAATGTTT	out-of-frame	VSVAHFVSRALGVKLQLI*MNAVCVEQASQ*GLSTGPDMASLDLFVMTIWQLFAVLIVLFAKSREISTEGEPCVLskn*w*kalteatkfsrhlfslssspsfatei*wicl|rhlrtpprqrfstmagchfkqqnhw*	.
TALL060	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	1	8	8	low	.	.	mismatches(1)	CGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATG...CCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGA...GACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGA	out-of-frame	RNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrh	.
TALL060	AC079250.1	AC079807.4	-/.	-/.	2:47691056	2:48148875	exon	intron	deletion	downstream	upstream	0	0	3	28	0	low	.	.	.	.	.	.	.
TALL060	EEF1A1P6	DNAH11	-/-	+/-	7:22511577	7:21849601	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	11027	2	low	.	.	low_entropy(1),mismappers(2),mismatches(10)	TATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGaGACTTtATCAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTAC...|...TCAACAAATAATT	.	.	.
TALL060	RP11-429O1.1	RP11-750B16.1	+/.	+/.	17:52480927	17:53106134	intron	exon	deletion	downstream	upstream	0	0	3	1	8	low	.	.	mismatches(1)	.	.	.	.
TALL060	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	0	3	0	12	66	low	.	.	.	GTGAGGCCGTGGATGCAGGCATTAAGGTATACTGTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCT	.	.	.
TALL060	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528417	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	15	66	low	.	.	.	AGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATG	.	.	.
TALL060	CXorf21	AC005926.1(232193),CXorf21(11453)	-/-	./-	X:30576752	X:30547371	splice-site	intergenic	deletion/read-through	upstream	downstream	1	2	0	107	3	low	.	.	.	GAAGAAGATTGTTTCTGAGCTTGAGAAGCTTCTGGAGGATTGAAGAGTATTTGAAGTCTGTGTCAAACATCCATATCATAAGTGGAATTTTGGAGATATTCAAAG|AAAACTCAGCAtTGAAAATTATCACAATTAATTTCACATGGGTATTTGATCTCAATGAAAAGTGATGGTGTCATATACCTTTGATCTTCTTCAG___GGGCTCTTCCACCTTTGCTG	.	.	.
TALL060	SLC35E2B	SSU72	-/-	-/-	1:1692449	1:1564916	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	45	933	low	.	.	mismatches(1)	CCGGGGCCTAGCGCTATGCCTGCGGCGGAGACTGCATCAGGCTCTCG|CAAACGGGGATTCAGCGTCCGATCCTTTGGAACAGGGACTCACGTGAAGCTTCCAGGACCAGCTCCCGACAAGCCCAATGTTTATGATTTCAAAACCACATATGACCAGATGTACAATGATCTTCTTAGGAAAGACAAAGAACT___CTATACACAGAATGGGATTTTACATATGCTGGACAGAAATAAGAGAATCAAGCCCCGGCCAGAA	.	.	.
TALL060	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	3	0	8	3	low	.	.	mismatches(1)	GAAGCAcCTTCgAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTcTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGC	.	.	.
TALL060	SPOCK2	MICU1	-/.	-/.	10:72074592	10:72420516	intron	intron	deletion/read-through	downstream	upstream	0	0	2	8	0	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL060	EIF5A	NAA38	+/+	-/+	17:7312129	17:7867178	3'UTR	intron	deletion/5'-5'	downstream	upstream	0	0	2	724	0	low	.	.	mismappers(2),mismatches(1)	GGTTTTCCCCACCCCCTCgATCTGTCGGGGAGCCCCTGCCCTTCACCTAGCTCCCTTGGCCAGGAGCGAGCGAAGCTGTGGCCTTGGTGAAGCTGCCCTCCTCTTCTCCCCTCACACTACAGCCCTGGTGGGGGAGAAGGGGGTGGGTGCTGCTTGTGGTTTAGTCTTTTTTTTTTTTTTTTTTTT...|...GAAAGCGGGA	.	.	.
TALL060	EIF4G2	SBF2	-/-	-/-	11:10802203	11:10282757	CDS	intron	deletion	upstream	downstream	0	0	2	16	0	low	.	.	mismappers(1)	AGAGTTGCGAGAACACCATTGGGTTCCTCGCAAGGCTTTTCTTGACAATGGACCAAAGACGATCAATCAAATTCGTCAAGATGCAGTAAAA___GATCTAGGGGTGTTTATTCCTGCTCCTATGGCTCAAGGGATGAGAAGTGACTTCTTTCTGGAGGGACCGTTCATGCCACCCAGGATGAAAATGGATAGGGACCCACTTGGAGGACTTGCTGATATGTTTGGACAAATGCCAG___GTAGCGG...|...CTCAAATGGCA	.	.	.
TALL060	OSBPL8	NAP1L1	-/-	-/-	12:76404578	12:76060179	intron	CDS	deletion/read-through	upstream	downstream	0	0	2	0	9776	low	.	.	mismappers(1),mismatches(3)	GAGGAAGAGTT...|...GAAAGGAAGTATGCTGTTCTCTATCAGCCTCTATTTGATAAG___CGATTTGAAATTATTAATGCAATTTATGAACCTACGGAAGAAGAATGTGAATGGAAACCAGATGAAGAAGATGAGATTTCG___A	.	.	.
TALL060	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511760	7:23343166	exon	intron	deletion	downstream	upstream	0	0	2	538	4	low	.	.	low_entropy(1),mismappers(1),mismatches(9)	.	.	.	.
TALL060	ATAD2	IQCG	-/-	-/-	8:123320068	3:197892637	3'UTR	CDS	translocation	upstream	downstream	0	0	2	98	0	low	.	.	.	TTTTGAGGGGAATAAGGAATGGTCATCTAAAATGAGAGATTCTGGATTTTAATGCAGTTCAAAGTTGAGCTGTATTTTTGTTGTTGATTTATCTGGATTTTTTTTAAAGCCTTCTAAAACCCAGT...|...GGCAAAGATG___ATAAGAGAGTATGAACAGGTCATCATTGAAGATCGTATAGAAAAGGAGAGGAGCAAGAAGAAGGTAAAACAGGATCTCTTGGAATTAAAGAGCGTTATAAAG___AGACAGGGTCTTG	.	.	.
TALL060	SH3TC1	ORAOV1	+/+	-/-	4:8199405	11:69668012	splice-site	splice-site	translocation	downstream	downstream	0	2	0	489	77	low	.	.	.	CTGCGTGCTACGGCCCTGTGGGCCTGGGAGCTGCCTCTGAGGAACACGCCGCAG|CAGAAAGATGAAGGTCTTAGAATCATTGATTGGAATGATCCAGAAATTCCCTTATGATGACCCTACTTACGATAAACTCCATGAAGACTTAGACAAGATCAGAGGAAAATTTAAACAG___GGTCACCGAAGTCCCCACACGCTG	.	.	.
TALL060	ENO1	FAM53A	-/-	-/-	1:8878580	4:1668905	splice-site	splice-site	translocation	upstream	downstream	0	2	0	3423	4	low	.	.	.	ATCTCGCCGGCTTTACGTTCACCTCGGTGTCTGCAGCACCCTCCGCTTCCTCTCCTAGGCGACGAGACCCAGTGGCTAG|GCACAAATCCTGAAGAGCCCGTGGGCGTGGACTGCTCATCTGTAAAGAAAGTGGAGACATGACCTTGAGATTTGGCTGACCCAGCAATGCTGGGGCCTTCGCAAGTCTGATGTTCCAG	.	.	.
TALL060	MAD1L1	C7orf50	-/-	-/-	7:2149152	7:1010143	splice-site	splice-site	deletion	upstream	downstream	1	0	0	145	147	low	.	.	.	CGCGCACCTGCG___GGAGATGAGAGAGACCAACGGGCTGCTCCAGGAAGAGCTGGAAGGGCTGCAGAGGAAGCTGGGGCGCCAGGAGAAGATGCAGGcGACGCTGGTTGGCTTGGAGCTGGAGAAC...GGCCTGAGCATCAG___GACTCCAGAAGACCTTTCCAGATTCGTGGTTGAGCTGCAGCAGAGGGAGCTTGCCTTGAAGGACAAGAACAGCGCCGTCACCAGCAG|GGCGAAGCTGTGCTCAGGCCCGGG	out-of-frame	GLSIRTPEDLSRFVVELQQRELALKDKNSAVTSr|aklcsgp	.
TALL060	DLEU2	RNASEH2B	-/-	+/+	13:50068097	13:50930683	splice-site	splice-site	inversion	upstream	upstream	1	0	0	151	1572	low	.	.	.	CTCCGCCGTTGACAG___GTTTTGACCTGTAGCAGAGAACCAATTCTGGAGAACAGCCTCACTTCTTTGATTGAATACTTACATAATGCATTGGAACATGACATGAGATTAAG___GTTTAATAATGAT...AGACCACAATAAAAGAGACCTCTACTTAGCTCAGCAATTCTTACCTT|GAGGTCTTCTCCATTTTGCCACACCTGTGGATCCTCTATTTCTGCTTCTCCACTACCTCATAAAGGCTGATAAGGAGG	.	.	.
TALL060	C17orf89	RPTOR	+/+	+/+	17:81239678	17:80822201	splice-site	splice-site	duplication	downstream	upstream	1	0	0	715	86	low	.	.	.	CGGCTGGCCGCCTGCGGGGCCGAG___GCCGCGGCGTACGGCAGGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAGGACTTCTGCGCGCGGGAGTTCGAGGCCCTGCGGAGCTGCTTCGCCGCTGCG|GATCCCTGGCCGCCTGAACGACAGGAGGACGCCCCTGGGTGAACTGAACTGGAT	out-of-frame	RLAACGAEAAAYGRCVQASTAPGGRLSKDFCAREFEALRSCFAAA|dpwpperqedapg*	.
TALL060	NCOR2	CDK2AP1	-/-	-/-	12:124567308	12:123267282	splice-site	splice-site	deletion	upstream	downstream	1	0	0	56	352	low	.	.	.	TCCCGACCCGAGGCCGGGCCTGCTGCGCGCCCCCAGCCCGATCGGCACCGCCACTTGCCTGAGCGCCCCGGCGGCCCGAGCGCGCCCCAAGCCCGGGCGCCACCGCTGCCACCTCCGCGAG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGAC	.	.	.
TALL060	NCOR2	CDK2AP1	-/-	-/-	12:124449815	12:123267282	splice-site	splice-site	deletion	upstream	downstream	1	0	0	142	352	low	.	.	.	CCGAGCCTGAGAAGCCCGTGTCACCGCCGCCCATCGAGTCGAAGCACCGCAGCCTGGTGCAGATCATCTACGACGAGAAtCGG___CCGCTGTACAACCAGCCCTCCGACACCCGGCAGTATCATcAGAACATCAAAAT|CTGGGAGTGTCCACTCGCCTTtCACCAGCATGGCAACG	out-of-frame	EPEKPVSPPPIESKHRSLVQIIYDENRPLYNQPSDTRQYHqNIKi|wecplafhqhgn	.
TALL060	FUBP1	RABGGTB	-/-	+/+	1:77956572	1:75789952	splice-site	splice-site	inversion	upstream	upstream	1	0	0	446	632	low	.	.	.	AACGGATCCAAATTCAGCAGCTTGGGCTGCTTATTACGCTCACTATTATCAACAGCAAGCACAGCCACCACCAGCAGCCCCTGCAGGTGCACCAACTACAACTCAAACTAATGGACAAG|ATTCTTACGCTGTATGACAGTATTAATGTTATTGACGTAAATAAAGTTGTGG	out-of-frame	TDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQ|dsyav*	.
TALL060	RABGGTB	FUBP1	+/+	-/-	1:75787604	1:77948774	splice-site	splice-site	inversion	downstream	downstream	1	0	0	715	337	low	.	.	.	TTTCCCTGTTAGACATG___GGCACTCCACAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTTGTTATTGGAGAAACATGCAtATTATATCGCATCCTATGGCTCAAAGAAAGATGATTAT|GGCCAATAATAAGAAGTGGACAATACAGTATTTGCTTCATTGTGTGGGGGAAAAAAACCTTTGTTAAATATATGGATGCAGACGACTTGAT	in-frame	MGTPQKDVIIKSDAPDTLLLEKHAyYIASYGSKKDDY|GQ*	.
TALL060	RNF126	DAZAP1	-/-	+/+	19:661356	19:1434740	splice-site	splice-site	inversion	upstream	upstream	0	1	0	4	1437	low	.	.	.	CAGCTTTCTGTCCCCACTGGCCGTGGCAGGAGAGGCTGGTTGCCTGACAGCCCGCCAGCCTGG|GTTACGGGCAGGACTTGAGTGGCTTCGGACAGGGCTTCTCAGACCCCAGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCGTGCCAGGGTCGGGGGGCCCgCCCGCCGGCGGCAGCGGCTTTGGACGAGGGCAGAA	.	.	.
TALL060	RNF126	DAZAP1	-/-	+/+	19:663047	19:1432514	splice-site	splice-site	inversion	upstream	upstream	1	0	0	285	1169	low	.	.	.	GGGTGCCGCGCGGGGGGCGGGCGGCGCGGAGTAGGTGGCGGCGGCCATGGCCGAGGCGTCGCCGCATCCCGGACGGTACTTCTGCCACTGCTGCTCCGTGGAGATCGTCCCGCGCCTGCCG|GTTTTGGCTACGGGCCTCCACCTCCA	out-of-frame	MAEASPHPGRYFCHCCSVEIVPRLP|vlatglhl	.
TALL060	PRKAR1B	SUN1	-/-	+/+	7:596146	7:895334	splice-site	splice-site	inversion	upstream	upstream	1	0	0	801	364	low	.	.	.	GGGGAAGTGGAT___GTGTACGTGAACGGAGAGTGGGTGACCAACATCAGCGAGGGAGGCAGCTTCGGGGAGCTGGCGCTCATCTACGGCACCCCCAGGGCTGCGACCGTGAAAGCCAAGACGGACCT...CGACCGGGACAGCTACCGGCGCATCCTTATG|GGAcCCTTCTGACgAGCCTCATGGGCTCCTCAGAGCAGGAGGATGGGGAGGAGAGCCCCAGCGACGGCA	out-of-frame	DRDSYRRILM|gpf*	.
TALL060	SUN1	PRKAR1B	+/+	-/-	7:886650	7:596304	splice-site	splice-site	inversion	downstream	downstream	1	0	0	246	834	low	.	.	.	CCGGGAGCTCATGTACTCGGGAGCCCTGCTCTTCTTCAGCCATGGCCAG___CAAAACAGTGCAGCAGACTTGTCCATGCTGGTCCTGGAGTCCCTGGAGAAGGCGGAAGTGGAGGTGGCTGACGAGCTGCTGG|GTGTACGTGAACGGAGAGTGGGTGACCAACATCAGCGAGGGAGGCAGCTTCGGG	.	.	.
TALL060	PRKAR1B	GET4	-/-	+/+	7:596146	7:895334	splice-site	splice-site	inversion	upstream	upstream	1	0	0	801	364	low	.	.	.	GGGGAAGTGGAT___GTGTACGTGAACGGAGAGTGGGTGACCAACATCAGCGAGGGAGGCAGCTTCGGGGAGCTGGCGCTCATCTACGGCACCCCCAGGGCTGCGACCGTGAAAGCCAAGACGGACCT...CGACCGGGACAGCTACCGGCGCATCCTTATG|GGAcCCTTCTGACgAGCCTCATGGGCTCCTCAGAGCAGGAGGATGGGGAGGAGAGCCCCAGCGACGGCA	out-of-frame	DRDSYRRILM|gpf*	.
TALL060	GET4	PRKAR1B	+/+	-/-	7:886650	7:596304	splice-site	splice-site	inversion	downstream	downstream	1	0	0	246	834	low	.	.	.	CCGGGAGCTCATGTACTCGGGAGCCCTGCTCTTCTTCAGCCATGGCCAG___CAAAACAGTGCAGCAGACTTGTCCATGCTGGTCCTGGAGTCCCTGGAGAAGGCGGAAGTGGAGGTGGCTGACGAGCTGCTGG|GTGTACGTGAACGGAGAGTGGGTGACCAACATCAGCGAGGGAGGCAGCTTCGGG	out-of-frame	RELMYSGALLFFSHGQQNSAADLSMLVLESLEKAEVEVADELL|gvrerrvgdqhqrgrqlr	.
TALL060	PITRM1	FUS	-/-	+/+	10:3163725	16:31189123	splice-site	splice-site	translocation	upstream	upstream	1	0	0	101	4172	low	.	.	.	CAGACTTCTTCCTGACCACACGTACTCAGTGGTCTCCGGGGGTGACCCACTGTGCATCCCGGAGCTTACATGGGAGCAGCTTAAGCAGTTTCATGCCACTCACTATCACCCAAGCAATGCTAG|AACAGGATAATTCAGACAACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACAATTGAG	out-of-frame	RLLPDHTYSVVSGGDPLCIPELTWEQLKQFHATHYHPSNAr|tg*	.
TALL060	PITRM1	FUS	-/-	+/+	10:3149621	16:31189123	splice-site	splice-site	translocation	upstream	upstream	0	1	0	117	4172	low	.	.	.	GGCCCTATGTGCCCCTCTTCTGCAGCGTCCTCACCAA|AACAGGATAATTCAGACAACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACAATTGAGTCTGTGGCTGATTACTTCAAGCAGATTGGTATTATTAAG___ACAAACAAGAAAACGGGA	out-of-frame	PYVPLFCSVLTk|tg*	.
TALL060	SPATC1L	SUMO3	-/-	-/-	21:46184356	21:44809118	splice-site	splice-site	deletion	upstream	downstream	0	1	0	310	1801	low	.	.	.	CCGGCTGCTGATAAAACAAGACCCTCGGAGCCAAGAAACAACACTGAG|GGCTTGTCAATGAGGCAGATCAGATTCAGGTTCGACGGGCAGCCAATCAATGAAACTGACACTCCAGCACAG___CTGGAGATGGAGGACGAGGACACCATCGACGTGTTCCAGCAGCAGACGGGAGGTGTGCCGGAGAGCAGCCTGGCAGGGCACAGTTTCTAGAGGGCCCGTCCCCAGCCCG	.	.	.
TALL060	SPATC1L	SUMO3	-/-	-/-	21:46184356	21:44814104	splice-site	splice-site	deletion	upstream	downstream	0	1	0	310	1178	low	.	.	.	AGATGACCCATCTGTTGCATCCCGGCTGCTGATAAAACAAGACCCTCGGAGCCAAGAAACAACACTGAG|GAGGGTGTGAAGACAGAGAATGACCACATCAACCTGAAGGTGGCCGGGCAGGACGGCTCCGTGGTGCAGTTCAAGATCAAGAGGCACACGCCGCTGAGCAAGCTGATGAAGGCCTACTGCGAGAGGCA	.	.	.
TALL060	NPM1	MGAT1	+/+	-/-	5:171388006	5:180809076	splice-site	splice-site	inversion	downstream	downstream	1	0	0	9401	158	low	.	.	.	GGTTGTTCTCTGGAGCAGCGTTCTTTTATCTCCGTCCGCCTTCTCTCCTACCTAAGTGCGTGCCGCCACCCGATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTCG|GTTAACACAGAAATCTGCCTCCTGGGCCATGCCGCTTCTAAGGCCTGTT	out-of-frame	MEDSMDMDMSPLRPQNYLF|g*	.
TALL060	MGAT1	NPM1	-/-	+/+	5:180803602	5:171405302	splice-site	splice-site	inversion	upstream	upstream	0	1	0	64	13916	low	.	.	.	CTTTACTCCTGGCTCAGCGACAG|GGACAAGAATCCTTCAAGAAACAGGAAAAAACTCCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGTGAGTAAAGTTATCTTAAAAAAACTTTGTCTCCCCaCTCAAATTGCAC	.	.	.
TALL060	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89145267	splice-site	splice-site	inversion	upstream	upstream	0	1	0	114	1183	low	.	.	low_entropy(1)	CCGCCGGATCCCCCGGACCCCCCGACC|GGGACACCGTGGTGTTTAAGGATGGCCAGTACTGGATCCGAGGCCGGACCTCAGTGGACATCATCAAGACTGGAGGCTACAAGGTCAGCGCCCTGGAGGTGGAGTGGCACCTGCTGtCCCACCCCAGCATCACAG___ATGTGGCTGTGATTGGAGTTCCGGATATGACATGGGGCCAGCGGGTCACTGCTGTGGTGACCCTCCGAGAAGGACACTCACTGTCCCACAGGGAGCTCAAAGAGTGGGCCAG___AAATGTCCTGGCCCCG	.	.	.
TALL060	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89100662	splice-site	splice-site	inversion	upstream	upstream	0	1	0	114	167	low	.	.	.	TCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCtCGACC|CTCGGCCGCCTGTCAGTGCAATGCTGCCCCATGTGGTGCTCACCTTCCGGCGCCTGGGCTGCGCCTTGGCGTC...GAGACACAGAGGAAGTGGTCTTCTGCACACAGCCCCAGTGGCCCGCTCGGACAGGAGCGCCCCGGTGTTCACCCGTGCCCTGGCCTTTGGGGACAGAATCGCCCTGGTTGACCAGCACGGCCGCC	.	.	.
TALL061	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	87	0	340	145	high	.	.	duplicates(10),low_entropy(1),mismatches(6)	ACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTC	.	.	.
TALL061	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	37	29	9	88	89	high	.	.	duplicates(1),low_entropy(7),mismatches(5)	AGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGA	out-of-frame	ATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL061	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	16	44	13	362	197	high	.	.	duplicates(8),low_entropy(17),mismappers(1),mismatches(5)	CCGCCCTGCAGGTGCCCGAGCCGCAGGGTGCGCCCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAG...ACCAGCCCGGCT	.	.	.
TALL061	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123577367	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	12	362	193	medium	.	.	duplicates(1)	CCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GAGGTTTCCTGGCCTGTGGCGTCAGAAGAGGGGAGGGGGATGAGTGCTGAGCTTCCTGGGAGCGACC	.	.	.
TALL061	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	47	1	193	193	high	.	.	duplicates(3),low_entropy(10),mismappers(2),mismatches(5)	CAAAACTCCCGGGCTCCAGAGATCCTCCTTCCTCAACCTCCCAAAATGCTGGGATTACAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCCTCATTCCCAATGCCATCCAAGTTTGCACTGATTCAGAAAAG___CACTTCTTCACTTCGTTTGGGGCCCGGGATAGG	.	.	.
TALL061	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	9	16	3	55	79	high	.	.	mismatches(2)	ACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...TTTTTTT...___...GTC...___...CTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCgaCTCGCACCTGCTCAG...GCACCACGTGGTGCCCCCCAGTACCGTGACCGAGGACTACCTGAGAAGCTTCCGGCCCTACCACACCACCGACGACCTCCGCATGTCCTCACTGCCTCCCCTCGGCCTGGACCCGGCCACTGCTG	.	.	.
TALL061	PTPN1	PREPL	+/+	-/-	20:50510590	2:44332656	splice-site	splice-site	translocation	downstream	downstream	3	5	3	457	82	high	.	.	duplicates(1),mismatches(1)	GCGGCTAGGGCGGCGGTAGCTGCAGGGGTCGGGGATTGCAGCGGGCCTCGGGGCTAAGAGCGCGACGCGGCCTAGAGCGGCAGACGGCGCAGTGGGCCGAGAAGGAGGCGCAGCAGCCGCCCTGGCCCGTCATGGAGATGGAAAAGGAGTTCGAGCAGATCGACAAGTCCGGGAGCTGGGCGGCCATTTACCAG|CTCCCTCCTTGGGCCTGTGGATTCATAATGGATACAAATTCTGACCCAAAGAACTGCCCCTTTCAACTTTGCTCTCCAATACGTCCCCCAAAATATTACACATACAAGTTTGCAGAAGGCAAACTGTTTGAGGAAACTGGGCATGAAGACCCAATCACAAAGACTAGTCGCGTTTTACGTCTAGAAGCCAAAAGCAAG___GATGGAAAATTAGTGCCAATGACTGTTTTCCACAAAACTGACTCTGAGGACTTGCAGAAGAAACCTCTCTTGGTACATGTATATGGAG	in-frame	MEMEKEFEQIDKSGSWAAIYQ|LPPWACGFIMDTNSDPKNCPFQLCSPIRPPKYYTYKFAEGKLFEETGHEDPITKTSRVLRLEAKSKDGKLVPMTVFHKTDSEDLQKKPLLVHVYG	.
TALL061	PTPN1	PREPL	+/+	-/-	20:50510590	2:44329112	splice-site	splice-site	translocation	downstream	downstream	2	0	1	457	89	medium	.	.	.	GGCGGTAGCTGCAGGGGTCGGGGATTGCAGCGGGCCTCGGGGCTAAGAGCGCGACGCGGCCTAGAGCGGCAGACGGCGCAGTGGGCCGAGAAGGAGGCGCAGCAGCCGCCCTGGCCCGTCATGGAGATGGAAAAGGAGTTCGAGCAGATCGACAAGTCCGGGAGCTGGGCGGCCATTTACCAG|GATGGAAAATTAGTGCCAATGACTGTTTTCCACAAAACTGACTCTGAGGACTTGCAGAAGAAACCTCTCTTGGTACATGTATATGGAGCTTATGGAATGGATTTGAAAATGAATTTCAGGCCTGAGAGGCGGGTCCTGGTGGATGATGGAT	in-frame	MEMEKEFEQIDKSGSWAAIYQ|DGKLVPMTVFHKTDSEDLQKKPLLVHVYGAYGMDLKMNFRPERRVLVDDG	.
TALL061	ST6GALNAC4	RP11-203J24.8	-/+	+/+	9:127916161	9:127940395	exon	splice-site	deletion/read-through/3'-3'	downstream	upstream	3	7	0	67	33	high	.	.	low_entropy(1)	CTCCCCTGCCCATGAGGAACCAGAGACCTTGACTCAGGCAGTCGAGATGAACTGCCCCCCACATCCAGCTCTCTCTCTCACAGCCCGGGGCTTCTGCAGTAAAGACAAGAGCGGCTGAACTGAACTTCACAACCCCAGTTCCACGTAGGCTTTGCCTG|TTTTCTCCCCAGGAATCTGGAACGATGAAGGTGATGATTGTGCCTGTGGCCAAGACCGGGAGAACCCTGGATCCCTACACCTTCCCCACCCCTGGAATGTCACTATACATATCTGACTTCTTCTGATGTTGCCTTTGACCCTAAAGTCAATATGATAAAGTAACAAG___AAGCTGGGACAGAGGAACAAACACAGCCCACTCAAGCAGTGGTGGCAACATTCTGTTAGAAAGGAGGGGAGTCAAAGAAAAAAA[a]CACCCCTCCGCCCATCTCCTTATCAC	.	.	.
TALL061	SLC16A3	METRNL	+/+	+/+	17:82229106	17:83084938	splice-site	splice-site	deletion	downstream	upstream	0	4	1	368	631	high	.	.	low_entropy(6),mismappers(1),mismatches(1)	GCAGAGGCGGgcAGAGGCGGCGAGAGGCGGGCTGAGGCGGCCCAGCGGCGGCAG|CGGGCTGACGCACGAGGCACACAGGAAGGAGGTGGAGCAGGTGTATCTGCGCTGTGCGGCGGGTGCCGTGGAGTGGATGTACCCAACAGGTGCTCTCATCGTTAACCTGCGGCCCAACACCTTCTCGCCTGCCCGGCACCTGACCGTGTGCATCAGGTCCTTCACGGACTCCTCGGGGGCCAATATTTATTTGGAAAAAACTGGAGAACTGAGACTGCTGGTACCgGACGGGGACGGCAGGCCCGGCCGGGTGCAGTGTTTTGGCCTGGAGCAGGGCGGCCTGTTCGTGGAGGCCACGCCGCAGCAGGATATCGGCCGGAGGACCACAGGCTTCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTG___CG	.	.	.
TALL061	SLC16A3	METRNL	+/+	+/+	17:82229106	17:83093167	splice-site	splice-site	deletion	downstream	upstream	1	2	0	368	1942	medium	.	.	low_entropy(2),mismappers(1),mismatches(1)	CCGCGGGCCGCTCCCCTAGCCAGGAAGAGCCGCCGTCCGCACCGGGACCGGAGAGGAAGCGGAGGTCTGAAGGGGGACAG...AGAGGCGGCGAGAGGCGGGCTGAGGCGGCCCAGCGGCGGCAG|CGCCGTGCCGTCCCTGCAGTGACACCGAGGTGCTCCTAGCCGTCTGCACCAGCGACTTCG___CCGTTCGAGGCTCCATCCAGCAAGTTACCCACGAGCCTGAGCGGCAGGACTCAGCCATCCACCTGCGCGTGAGCAGACTCTATCGGCAGAAAAGCAGGGTCTTCGAGCCGGTGCCCGAGGGTGACGGCCACTGGCAGGGGCGCGTCAGGACGCTGCTGGAGTGTGGCGTGCGGCCGGGGCATGGCGACTTCCT	.	.	.
TALL061	ZFP36L2	AC093609.1(116905),ZFP36L2(2806)	-/-	./+	2:43224469	2:43219596	CDS	intergenic	inversion	upstream	upstream	5	42	2	371	85	medium	.	.	low_entropy(2)	CGCGCAGCCGCCGGCGCCGCCCAGCGCGACCCTCCCCGCCGGGGCCGCCGCACCTCCCTCGCCGCCCTTCAGCTTCCAGCTGCCGCGCCGCCTGTCCGACTCGCCCGTGTTCGACGCG|CACACGTGCACGGCATGCATGCGCGCGCGCACACACACACACAACACACACAACACACACACACACACTCTTTCAAGGTCTAGCAAAACCCATCAGGAGAGGTTGGGCCCTGGAGGTGCTGTGGCTTCCTGCTGCCCCGCTCCCTCCCGCCTCCTCCCTGCAGGGCTCCTCCTGGGGAGGCCTGTCCAGCTGCCAGGCCCCGCCCCGCCACAGCCCCCGCTGTCCTCCTCCCTCCCTCAGCCGTGCCAGCAGCGGCACAGAACTGGAATTGCCCTGGACGGCCACAGCTCTGCATATCCCCCAGGAGTGTGGACAAGAAAAAATAAACACAATTAGAGTTCACGACAATGGGCCCCTGATGGAAG	out-of-frame	AQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDA|htctacmrarththnthnththtlsrsskthqerlgpggavasccpapsrllpaglllgrpvqlpgpappqpplssslpqpcqqrhrtgialdghssayppgvwtrknkhn*	.
TALL061	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	6	16	9	101	43	medium	.	.	duplicates(3),mismatches(3)	GAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATaTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGA	.	.	.
TALL061	AC114730.2	RTP5	+/+	+/+	2:241844478	2:241871714	splice-site	splice-site	deletion/read-through	downstream	upstream	3	6	1	212	152	medium	.	.	low_entropy(1),mismatches(1)	CGGGAGCGCAGCCGCAGCCCGGCGGCGACACAGGCCCGGGGCCAGCCGGGGACGGAAAAAGTGAGTGCGCGGCGGCGCGGGGCGGCCTGACGGGAAGGCGGGAGGCGAAGTGCTGACTGCGCCGCGGTCTCTCAGCCGCCAACACACCGCGGACGCCCGGGGACAGCGACCGCTTCCTCCCTCCCCGCCCGCCTTGTCTCTTTTT|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGTGCAGGCTGTGCCCCGCACCCGGGGACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCTGGTCTTGCACATCCTGCAGGACTGCTACGGGGATGGCCCCGGCCCAGCCCGGCACCCCAGGGAGGCCTATGAGGGCTGCTGTGAG	.	.	.
TALL061	UPP1	UPP1	+/+	+/+	7:48106358	7:48104152	exon	intron	duplication	downstream	upstream	1	1	8	233	214	medium	.	.	duplicates(1)	AAGTATTTGCCTGAAATCTTAAATATTAACAAGGTATGAAACAGGGATCAATGAAACACATCATGGTATATGGTTCAGTGACAGACAACAGTGGGAAATCGCCGTGAATGGAAGCAAGAAATATGGGACAAAGTACTTGAAGGTTCCTGGCCATTTTTATTTTATTCTTTTTTTTTTCTTTCGAAATGGAGTTTGCTCTTTTTGCCCATtCT|t|GtTTGCAGTGAGCCAACATCGCGCCACTGCACTTCAGCCTGGCAACAGAGCGAGACTCCATCTCAACAACAACAACAACAAACAAACAAACAAAAACCCCCACAAACATGGCAAAGAAAGAATGAGATTTAATGAGAAAGCAAAAGCTAACAAATTGTTGAATTGTAAGCCAAAGTCTGTTAGGCAGATTTGTTTTAAATACGTGGTCTTGCTCTCTGGGGTTCCAACTCTGTGCCATTCTTTCTGCTAAAAACTGGGTTCTAGT	.	.	.
TALL061	NEU4(26920),AC114730.2(47)	RTP5	./+	+/+	2:241844333	2:241871714	intergenic	splice-site	deletion/read-through	downstream	upstream	1	5	0	173	152	medium	.	.	mismatches(2)	CGAGGCCCGGCCACACCCAGGGCGCTCCTGAAGCCGCCGCAGCTGCTGTGCGAGGCCGGGCCGACCCGCCTGGGGCGCGTGGGTGGGGCGGGAGCGCAGCCGCAGCCCGGCGGCGACACAGGCCCGGGGCCAGCCGGGGACGGAAAAA|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGTGCAGGCTGTGCCCCGCACCCGGGGACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCTGGTCTTGCACATCCTGCAGGACTGCTACGGGGATGGCCCCGGCCCAGCCCGGCACCCCAGGGAGGCCTATGAGGGCTGCTGTGAGGCCTGTGAG	.	.	.
TALL061	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	0	4	1	9	98	medium	.	.	.	AGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCT...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACC	.	.	.
TALL061	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	3	0	158	106	medium	.	.	.	ACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTG...GTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAG	.	.	.
TALL061	LINC01059	GRAMD1B	+/+	+/+	11:123454829	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	4	0	25	197	medium	.	.	low_entropy(2)	GGGGATGTTCTGCATATCTTGCCTTGTGCTGAATTTCCTATAAAATGGCTTCATGAAACTTTGATGTCAGCTTAAGCAGTACTGCCACCAGGCTCTGCGGAGGGCCCTAAGTGAATAGAGGGC...CAAATTTGAAATGAGTGACAGTGGGTTATAATTAGGGGAGAAGATGCTCTTGATGCTACTGAGAAGATACAGAGTGAGAACTTTTCTTAGAAAAGTCTGAGGTTGTAAAGAAGAACCAAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAATGTAAGTATTCCTGTTTCCCTT	.	.	.
TALL061	RP11-680G10.1	GSE1	+/+	+/+	16:85357643	16:85648552	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	6	79	medium	.	.	mismappers(1)	CTGCCCCTGTTCCTATACACCCTGCGAGCAAGCCACAGCCTGTTGGTGGATGACGGACAGCAGCTGATCATCGGTGCTTGCGTGGAGTGTGGGACCCTGGTGTGTGCGGGCCAAGGGCTCACCCG...AGCCTGTTTGTGGATCTCTGGAAGCATCTGCAGCCAGCCACCCTCCCACCCGGGAGTCCGAGACCCGGCCACGCGCCCCCACGGAGACCCTGCCCAGAGGCCCCAGGATGGCCCAGGAGCTGAGGCCAGCACAGTGTCTGCAGAGCAGCCGGGAGGAGGACGGACCAGACCTTACTGGTGCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCT...GGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAG...GCATGTCCTCACTGCCgCCCCTCGGCCTGGACCCGGCCACTGCTGCAGCCTACTACCACCCCAGCTACCTGGCCCCACACCCCTTCCCCCACCCGGCCTTCAG___GATGGACG	.	.	.
TALL061	THAP9-AS1	THAP9-AS1	-/-	-/-	4:82895458	4:82896272	exon	intron	duplication	upstream	downstream	1	2	1	182	172	medium	.	.	.	ATGGGACTTACACATTTATTTTGATAAAAGAACACAGAAAAGGTCAGGTATGAGCAGAAAATTGACATTTATTTCAGCCTAATGTGGATACTGTACTCTGAATTAAAAATTTCTTTTCCTTACT...GGCATTGGAGGGGGTGGAaCTTTTAACTTTGACAGTCT|CACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAGAAAGAGTTGGTTCTGTTAAACAATATTTATTTCTCATAATAACCCTATGAAAGCAGATACAGACTTCTGGCTTTTTAGGATTGGTATTTCACTTGTTGAACACCTACCCTTGTGTCAGATGTATAGCAGGTTAACAAAGTCAATACAGTGATACACTTGACATAATCTTTGTTCTGAGTTTTTTTCCCAATTATAGTAAAAT	.	.	.
TALL061	EML3	EML3	-/.	-/.	11:62604608	11:62606667	intron	intron	duplication	upstream	downstream	0	2	1	41	26	medium	.	.	.	.	.	.	.
TALL061	SLC35A3	SLC35A3	+/+	+/+	1:100024323	1:100008163	3'UTR	intron	duplication	downstream	upstream	0	2	1	59	102	medium	.	.	.	ATTTGGTGGGCAAAAATGCTTTCTATAATTTGAATATGGGTTTAATTTAATTATTAACTATAGACAGAATTACTTACTGAGTATAAGAAGTATTTTACTGTCTGGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGC|GGCTGGTCTCGAACTCCTGACCTCATGATCCACCCTCCTCAGCCTCCTAAAGTGCTGGGATTACAGGCGCGAGCCACTGTACCCAGCCTAATATTTTTCATATTTATTTTAAATGAGTATTACAAAAGTTTAAGTGGCATATCAAATTCATATTTTCATAAATATTGCTTAGGGTAAGCTAAAGTAGGCATTGTTTCAAACAGTTAGGTATTTTAAATTAGAAAGTTATTAATAGTTCAGGTGGAACATAAGTTTGAC	.	.	.
TALL061	LINC00672	LASP1(3150),LINC00672(248)	+/+	./+	17:38927391	17:38924920	exon	intergenic	duplication	downstream	upstream	1	0	1	12	21	medium	.	.	duplicates(1),mismappers(1)	TGGGATTCAGAGTAGAATTGGCCTGCAAATCTGGGGTGTTTATTCCTTTTACAAGTCTATCATAATTGTTCTACATTTAATTTTCCTTTCTTGCTTAAAAGTAAACAAGGAGAGTCAGGAGTGGTGGCTCATGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGATGGATCA|CCTGACCTTGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCGCCCGGCTGGTCTCTGACACATCTAAGCTATGAACCATTAGGGTAAGTTTCTGACCATCTCTGAGCCCCATCTATGAAAGACTCATAGGGAGGTTGAAATTGCgCCACATGTACGATATCTGGCCCAG	.	.	.
TALL061	SLC12A7	NKD2	-/-	+/+	5:1093533	5:1032152	splice-site	splice-site	inversion	upstream	upstream	0	1	1	369	1199	medium	.	.	.	AGGGAAGAACATGGCACTTTTCGAG___GAGGAGATGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACGAGGAGAGCCGGCGGCGGGAGGCCAAG|GAGCTGCCCAATGGGGACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTACAGG...CAACATTGACGTGGGTCTCTCTCCGGCCTCACTTGCGGGAACACGTCCCTGGGGCCGGGGGCTCAGGGACAGGCATGTGTTGCCCTAAACTGGGCATCTGTGGACACGGCGTAGTTCACTCAGTC	in-frame	GKNMALFEEEMDSNPMVSSLLNKLANYTNLSQGVVEHEEDEESRRREAK|ELPNGDPKEGPFREDQCPLQ	.
TALL061	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1076812	splice-site	splice-site	inversion	downstream	downstream	1	0	0	1131	368	low	.	.	.	GCCCCGGCTTCAGAACTCAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGA...GCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GTGTTTGGCCACGGGAAGGCCAACGGGGAGCCCACGTGGGCGCTGCTGCTG	in-frame	FVASAYASGRKGAEEAERRARDKQ|VFGHGKANGEPTWALL	.
TALL061	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1065478	splice-site	splice-site	inversion	downstream	downstream	0	0	0	1131	492	low	.	.	inconsistently_clipped(1)	CGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|AACATACGGTCCCTAATGAGCACAGAGAAGACCAAGGGCTTCTGCCAGCTGGTGGTCTCGTCCAGCCTGCGGGATGGCATGTCCCACCTGATCCAGTCGGCCGGCCTGGGCGG	in-frame	AYASGRKGAEEAERRARDKQ|NIRSLMSTEKTKGFCQLVVSSSLRDGMSHLIQSAGLG	.
TALL061	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	5	1	3	63	39	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	TGCAGAGCGCCCAGTTCCTCTTCGGCCACTACTACTTTGACTACCTGGGGAACCTCATCGCCCTGGCAAACCTGGTGTCCATTTGC___GTGTTCCTGGTGCTGGATGCAGATGTGCTGCCTGCTG...TTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GTTTTGGAGATCTCAACTCTGGCTGTGTACCGATTGCCACACCCAGGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGACATGACCCGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGTAAATTATAACAAAACCCAATGGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCCCTGTCATCGAGGGAGTTT	out-of-frame	VYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLLVLEISTLAVYRLPHPGWRPEMVGLLSLWDMTRMLNMLIVFRFLRIIPSMK|*	.
TALL061	IL9R	WASH6P	+/+	+/+	X:156004565	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	7	0	1	670	179	low	.	.	duplicates(1),mismappers(1),read_through(6)	GTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGG	out-of-frame	MGLGRCIWEVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|vpenyfyvpdlgqvpeidvpsylpdlpgiandlmyiadlgpgiapsapgtipelptfhtevaeplkadlqd	.
TALL061	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	8	0	411	179	low	.	.	duplicates(1),mismatches(1)	AGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCC	out-of-frame	MPQTCDGTGQMHLGr|sqrttsmcqtwarclrlmfhptcltcpalpttsctlptwapalp	.
TALL061	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	5	0	3	446	179	low	.	.	low_entropy(1),read_through(2)	ACCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG	out-of-frame	MGLGRCIWEVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|gprelllcarpgpga*	.
TALL061	IL9R	WASH6P	+/+	+/+	X:156007607	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	3	305	179	low	.	.	.	GTGGAGTGAGTGGAGCCAGCCTGTGTGCTTCCAGGCTCCCCAGAGACAAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCC...CCAG___GGTGAAGAGAATCTTCTACCAGAACGTGCCCTCTCCAGCGATGTTCTTCCAGCCCCTCTACAGTGTACACAATGGGAACTTCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG	out-of-frame	RVKRIFYQNVPSPAMFFQPLYSVHNGNFQ|vpenyfyvpdlgqvpeidvpsylpdlpgiandlmyiadlgpgiapsapgtipelptfhtevaeplka	.
TALL061	IL9R	WASH6P	+/+	+/+	X:156001508	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	512	179	low	.	.	.	CAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TAACTGCTGCAAGAACGGACAGACACTGCTGCAGAGAACTTGCCACGGTGTTTCATGCTGTGGCTGGTGGTTCCAGGCTGCACGCTCCATTCTAGGAAAGG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAAC	out-of-frame	MPQTCDGTGQMHLGSNCCKNGQTLLQRTCHGVSCCGWWFQAARSILGK|gprelllcarpgpga*	.
TALL061	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	3	4	1	953	13	low	.	.	mismatches(1)	GCGCTGCCTGCTTGCCTACTTCCTGGATAAGAGTGCAG___AGGAGATGCCCTACCTGAAATGCCCTCTTCACACCGTCCTGAAACTGACGCCTGTCGCTTATG___GCTGCCGTGTGGAATCCATCTACCTG...CTGCACACACCGGGAGccGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGACCAATTAACCTGAGCTGCTGAGGACTCTGAGAAGCTTCCCTTATGCTGTGGTTATGTGGGATTTCCCAGGTCAGTGTCAGTTGTGTAAAATACAGAGGTCTCC	out-of-frame	CTHREpSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|elksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
TALL061	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	5	0	86	283	low	.	.	duplicates(2),low_entropy(1),mismatches(3)	CAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGG...___AATGAAAAT	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL061	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	24	283	low	.	.	read_through(6)	AAAGAACACACCCCGGAGATGTGGACACGGCCGCCCCAGGAGGGTCCTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACaCAGGAAATTAGCAAGGGAA...TCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGT	out-of-frame	QRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL061	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	5	2	0	68	159	low	.	.	low_entropy(2)	CTGACATTACATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGG	.	.	.
TALL061	TPCN2	RP11-554A11.9	+/+	+/+	11:69135532	11:69159446	intron	splice-site	deletion/read-through	downstream	upstream	3	0	3	42	18	low	.	.	mismappers(1),mismatches(1)	TGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG...CCAGCATGAAG___CTGATGGCCGTGGTGGCCAGTACCGTCCTGGGCCTGGTGtAGAACATGCGTGCGTTTGGCGGGATCCTGGTG...CCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTT|GACTTGCTGTGCTCAGATCCTCCATTCAAGAGAGCTACAGACACGGGGGTGCTGGTGAGCAGGAGCCGAGACCATCTGGGGTGGGACCGACCAAGAGTTTGAGGTGTCCAGGGGGTGACGTGAAGATGACCTATTGCAGAGGGTCCCTTCTCATTCACGCTCTGAAGTCTG	.	.	.
TALL061	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	1	3	2	32	225	low	.	.	duplicates(1),inconsistently_clipped(1),low_entropy(2),mismatches(2)	ATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTT...CAGAAATCCATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA___...CTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAAGACGTCATTACTCTACGGAGACATGTGGAAACAAAAG	.	.	.
TALL061	TTC33	AC108105.1(192654),SNORA63(141894)	-/-	./-	5:40746798	5:40513069	splice-site	intergenic	deletion/read-through	upstream	downstream	3	1	1	105	8	low	.	.	duplicates(1)	AGACTGAGTaGTCTTTCCTTTGCCCGCTTCTGTGGACTGTTCGAACGCCCAGGGGTGGGCCAAACCCGTTTCTTAGGAAACCAGGAATCCAGGGAAGGCAG___AATGGCTTCCTTTGGGTGGAAGAGGAAAATTGGTGAGAAGGTCTCAAAGGTCACTTCCCAGCAGTTTGAAGCTGAAGCTGCTGATGAGAAGGATGTAGTTGACAACGATGAAGGGAACTGGCTTCATGCCATTAAACGTAGGAAAGAAATTCTTCTTGAAGGCTGTGCTGAGAAAAGTAAACAGCTGAAGGATGAAGGAGCCAGTTTGGCTGAAAATAAAAG|GAGACCTTAAGATAGAAAAACTGCCAGGAGGGACCTGTAGGTCTGCTTTCTCCACTCATGTTTGGAGAACACGTCTCCAAAGAAATTCATCTGAACTTGATGCAGAGATTCCTGGACTAGATTCCTGAGAAATCTAATGTCAGCTACAGAAATGCCCCA	out-of-frame	MASFGWKRKIGEKVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAENKr|rp*	.
TALL061	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	intron	deletion/read-through	downstream	upstream	0	4	1	16	11	low	.	.	duplicates(1)	ATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGT...GGACACACTGCTGAACTCTGACAGTACAAAGGAAATG___GGTTTTACGTGCAAGATCCAGGCTCTGCGTGATAAGCTGTGGATCTTCCTGGTTCAtTCTTTCTATGCTGTTCGTCACACAGAAA	in-frame	IAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADL	.
TALL061	GYPE	RP13-578N3.3	-/-	+/-	4:143876746	4:143841053	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	2	2	38	5	low	.	.	.	TGGCAATGCACACTTCAACCTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATG___GGATAACACTCATTAATTGGTGGGCGATGGCTCGTGTTATTTTTGAGGTGATGCTTGTTGTTGTTGGAATGATCATCTTAATTTCTTACTGTATTCGATGACTGATAAAG|AAA?AGCATGCTCCCTGTGTTGATGCAGTCGCCCCCCTCCCGGGCTTTGTTCTACACATGGATGTAACCTGCCACACACTGGAAGACACTAAGTTTGGAACCCATGTAATGTTCAACTAGTCAAACAAGGGAAAATAGCATCAACCTTACCATTAATTTAAGTCACCTTTTGCAAAAGCTCCTCTACCCCATATGTTTTTTAACCGACTAATGGAACTGTCAGCAAAAGTAGGAAACAGCATCACAG___AAACACACTTTTGGGGGACATTAGAAAGATGACTGATTAG	out-of-frame	AMHTSTSSSVTKSYISSQTNGITLINWWAMARVIFEVMLVVVGMIILISYCIR*lik|k?hapcvdavaplpgfvlhmdvtchtledtkfgthvmfn*	.
TALL061	MTG1	CYP2E1	+/+	+/+	10:133402773	10:133531585	splice-site	splice-site	deletion/read-through	downstream	upstream	0	4	0	192	37	low	.	.	.	CTGTGTG___GAACGGTGCTGGACCACCTGGTCGGGGAGGAGACCATGGCTGACTACCTGCTGTACACCCTCAACAAACACCAGCGCTTTGG|GAATCATTTTTAATAATGGACCTACCTGGAAGGACATCCGGCGGTTTTCCCTGACCACCCTCCGGAACTATGGGATGGGGAAACAGGGCAATGAGAGCCGGATCCAGAGGGAGGCCCACTTCCTGCTGGAAGCACTCAGGAAGACCCAAG___GCCAGCCTTTCGACCCCACCTTCCTCATCGGCTGCGCGCCCTGCAACGTCATAGCCGACATCCTCTTCCGCA...ATGTGTCTGAAAGGGTGAAGGAGCACCATCAATCTCTGGACCCCAACTGTCCCCGGGACCTCACCGACTGCCTGCTCGTGGAAATGGAGAAG___AGAAGCTCCATGAAGAAATTGACAGGGTGATT	out-of-frame	LCGTVLDHLVGEETMADYLLYTLNKHQRFg|nhf*	.
TALL061	SPNS3	SPNS2	+/+	+/+	17:4453205	17:4513247	splice-site	splice-site	deletion/read-through	downstream	upstream	0	4	0	277	17	low	.	.	.	CCAGGAGCTGAGCCCCTCATCTGCGCCTCCAGCCTGCTTGCCACAGCCCCCTGCCTCTACCTGGCTCTCGTCCTGGCCCCGACCACCCTGCTGGCCTCCTAT|GCGTCCTTCTGGACATCCAGCAGCACTTTGGGGTCAAGGACCGAGGCGCCGGCCTGCTGCAGTCAG___TGTTCATCTGTAGCTTCATGGTGGCTGCCCCC...CAACAGGAAGGTGATTCTCAGCTGCGGCATTTTCTTCTGGTCGGCCGTCACCTTCTCCAGCTCCTTCATTCCCCAGCAG___TACTTCTGGCTGCTGGTCCTGTCCCGGGGGCTGGTGGGCATCGG...CGTGAAGCAGGCAGCCGGAGACTGGCACTGGGCATTGCGG___GTGTCCCCTGTCCTGGGCATGATCACAGGAACACTCATCCTCATTCTGGTCCCAGCCACTAAAAGGGGTCATGCCGACCAGCTCG	out-of-frame	PGAEPLICASSLLATAPCLYLALVLAPTTLLASY|asfwtssstlgsrteapaccsqcssvaswwlp	.
TALL061	SPNS3	SPNS2	+/+	+/+	17:4478637	17:4513247	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	274	17	low	.	.	.	CTGCAACTGGGCAGTGGTTGCCGACATCCTGCTG|GCGTCCTTCTGGACATCCAGCAGCACTTTGGGGTCAAGGACCGAGGCGCCGGCCTGCTGCAGTCAG___TGTTCATCTGTAGCTTCATGGTGGCTGCCCCCATCTTCGGCTAtCTGGGCGACCGCTTCAACAGGAAGGTGATTCTCAGCTGCGGCATTTTCTTCTGGTCGGCCGTCACCTTCTCCA	out-of-frame	CNWAVVADILL|asfwtssstlgsrteapaccsqcssvaswwlppssaiwatastgr*	.
TALL061	THAP9-AS1	SEC31A	-/-	-/-	4:82895458	4:82896272	exon	intron	duplication	upstream	downstream	1	2	1	182	172	low	.	.	.	ATGGGACTTACACATTTATTTTGATAAAAGAACACAGAAAAGGTCAGGTATGAGCAGAAAATTGACATTTATTTCAGCCTAATGTGGATACTGTACTCTGAATTAAAAATTTCTTTTCCTTACT...GGCATTGGAGGGGGTGGAaCTTTTAACTTTGACAGTCT|CACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAGAAAGAGTTGGTTCTGTTAAACAATATTTATTTCTCATAATAACCCTATGAAAGCAGATACAGACTTCTGGCTTTTTAGGATTGGTATTTCACTTGTTGAACACCTACCCTTGTGTCAGATGTATAGCAGGTTAACAAAGTCAATACAGTGATACACTTGACATAATCTTTGTTCTGAGTTTTTTTCCCAATTATAGTAAAAT	.	.	.
TALL061	LINC01410(5077),RP11-262H14.5(19185)	RP11-764K9.1	./.	-/.	9:62818563	9:63809355	intergenic	intron	deletion	downstream	upstream	0	0	3	7	2	low	.	.	.	.	.	.	.
TALL061	PLXNA2	CD34(59668),PLXNA2(51172)	-/-	./-	1:208023234	1:207971070	3'UTR	intergenic	deletion/read-through	upstream	downstream	1	2	0	8	13	low	.	.	duplicates(3)	GGAGAGGGCTGGGGGAGGGGAGCGCAGAGGTCTGGCTTCCATCCTTGGCGTGTAGCTTTGGATCGCTGTCTAACCACACAGCAGACGTTGCCCGGTCTCCCCAGCTCTAGTTTCTTGCCTGAATG...AATACTGATCCAGCAGCTGCTCCAGGAGAGGCCGTCTTTTTTTCCCAGCCACGCTGTGTCTTGCATGAGACTCCTGGGGC|TCTTTGTATGTTTATTCCACAGTGCAGAGCCCAGTGCTGACGAGACAGATGGTACACTCTCAGCAGATCTCTGATGGTTGAAT___CAGTGGTGTAACCCTGGCAAGTCACTTTCCTTGGGTGAGATCCCATT	.	.	.
TALL061	EEF1A1P13	TRIO	-/-	+/-	5:14652279	5:14472079	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	68	0	low	.	.	mismappers(1),mismatches(4)	GAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGaGTGAAGCTCTTCCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATC...|...CAATTGGCCT	.	.	.
TALL061	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23232293	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	1	82	11	low	.	.	.	GTGATGTTAGTTATTTGCTTTGGCTGTGCCCTTGGAAGGCATTGAGACATACTGCTGTGCCCAGCACCAAGATGAT___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTGTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGAACGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGG___GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGCAAAGAGCCCTGGAAT	.	.	.
TALL061	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23242710	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	82	4	low	.	.	mismappers(2)	TCGGTCTCTGCTGTTTTACGTCCTCCACCTCGGGAGCCCCCGGTGACTGTCACAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGATGCCAGGACATCCTGGAAGCTGGG...CTGACAACAAAGGAGATTGTGACATATTGCTGGGCCTAACACTAAGGTGATGTTAGTTATTTGCTTTGGCTGTGCCCTTGGAAGGCATTGAGACATACTGCTGTGCCCAGCACCAAGATGAT___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|ACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAATGGCGTGATCTTGGCTCACTGCAACCTCTGCCTTCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGT...GTGGATGAGTACAAGGTGCACAAAGGAAGTTATAATGGATTTAACCAGTGTTTGACAACTACCCAGAGCAAAATATTTCAGTGTGATAAATATGTGAAAGACTTTCATAAATTTTCAAATTCAA	.	.	.
TALL061	EEF1A1P6	DNAH11	-/-	+/-	7:22510608	7:21791384	3'UTR	intron	deletion/5'-5'	upstream	downstream	0	0	3	3806	1	low	.	.	low_entropy(1),mismappers(2),mismatches(5)	CTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATAT...|...GGCAAGGTCACT	.	.	.
TALL061	ANKRD36	RP11-734K23.9	+/+	+/+	2:97264285	2:97284690	intron	splice-site	deletion/read-through	downstream	upstream	1	2	0	6	70	low	.	.	.	AGCGGCTTGAGAAAATCCTGCAGCATTCAAGTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG___ATATGGACATTTCTGGAATTAAGAGCATTGAATCTACTTATGAATACG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTTGGACATCTGTAGTATTCCTGGTCTCGAATCATCCTGATATTCTTCATTTTGTTATTCACATTGGAC	out-of-frame	RLEKILQHSSLMLQVFES*mkiwtflelralnllmnt|flhrhypkqcfttvadrpenfhlkqqselqrqvtnqcgg*	.
TALL061	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	1	0	33	14	low	.	.	mismappers(2)	AAAAAGTTTATTAGAAAACTAGAAGCTTTCCATTTAGTAGGCAGCACCAGTGGATGTAATGAAAATGATAAATCATTCTCAAATTATATTTGTTACACATTAGGGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGT	out-of-frame	kkfirkleafhlvgstsgcnendksfsnyicytlGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL061	RP11-108K14.8	CYP2E1	+/+	+/+	10:133402773	10:133531585	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	192	37	low	.	.	.	AACGGTGCTGGACCACCTGGTCGGGGAGGAGACCATGGCTGACTACCTGCTGTACACCCTCAACAAACACCAGCGCTTTGG|GAATCATTTTTAATAATGGACCTACCTGGAAGGACATCCGGCGGTTTTCCCTGACCACCCTCCGGAACTATGGGATGGGGAAACAGGGCAATGAGAGCCGGATCCAGAGGGAGGCCCACTTCCTGCTGGAAGCACTCAGGAAGACCCAAG___GCCAGCCTTTCGACCCCACCTTCCTCATCGGCTGCGCGCCCTGCAACGTCATAGCCGACATCCTCTTCCGCA...ATGTGTCTGAAAGGGTGAAGGAGCACCATCAATCTCTGGACCCCAACTGTCCCCGGGACCTCACCGACTGCCTGCTCGTGGAAATGGAGAAG___AGAAGCTCCATGAAGAAATTGACAGGGTGATT	out-of-frame	TVLDHLVGEETMADYLLYTLNKHQRFg|nhf*	.
TALL061	ZNF644	RP4-665J23.4(28167),PHKA1P1(1905)	-/-	./-	1:90937485	1:90891087	splice-site	intergenic	deletion/read-through	upstream	downstream	2	1	0	282	18	low	.	.	low_entropy(1)	CGGCGTGTGACGCGGGGACGCCGCGTGCTCCCAACGTCGCCCCGGTTTGACGCACACGGCACCAAACT___GTTTGATTTAATTTTGGATGAGATCGTTCTTGCAGCAAGATGTTAATAAGACAAAAT...CAGAACTGCCCAGTGGGAAAAAGAATCAGTCTCTTACACTCATAGAACTTCTTAAAAATAAAAGGATGGGAGAAGAAAGGAATTCTGCTATTTCTCCTCAAAAGATCCATAATCAGACAGCAAGAAAGAGATTCGTTCAGAAATGCGTTCTTCCATTAAATGAGGATAGTCCGTTGATGTATCAGCCACAAAAAATGGACTTGACTATGCACTCAG|GTAAACTGTTCATTAAAAACCAGAGTGAAAATGGTGCATATGACTAGTAAGGTAAGAAGCAATACACGATTTTGGGAAAAGCCTACTTAAGCTGG...___AACTCAAGAAATAAACTAAAGTCTTGAAGCAAGCTGAGG	out-of-frame	ELPSGKKNQSLTLIELLKNKRMGEERNSAISPQKIHNQTARKRFVQKCVLPLNEDSPLMYQPQKMDLTMHS|gklfiknqsengayd*	.
TALL061	MLLT11	GABPB2	+/+	+/+	1:151060553	1:151088190	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	140	14	low	.	.	low_entropy(2)	AGAAGACAAAGCCGTCAAAGCCCCAACAGCTTTGTATTTCTCCAGCCCGGCGCAGACCCCGGAGCTCCCGAGGCACTCCCTCCATCTTTGGAACACGCCAGTAATTGATTGATAACAG|ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAACGTTGATGGCAAATGGCGCCCCATTCACCACAGACTGG___AATGGTGCAGATGTGAATGCCAAGGACATGCTGAAGATGACAGCTTTGCATTGGGCCACAGAGCGCCACCATCGAGATGTCGTAG	.	.	.
TALL061	ARHGAP35	NPAS1	+/+	+/+	19:46989675	19:47032278	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	181	2	low	.	.	.	GTACATTGAAGCCACAG___GACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCTGCAGAGACAGTTTGATCAAG___ACCACAACCTGGACCTGGCAGAGAAAGACTTTACGGTGAATACCGTGGCTGGTGCCATGAAGAGCTTTTTCTCAGAACTGCCTGACCCCCTGGTCCCGTATAACATGCAGATCGACTTGGTGGAAGCACACA|CCCCAGGCCGCCGCGGCCCCGCAGCGCTGGTCTCCGAAGTCTTCGAGCAGCACCTGGG...TGCAG___TCCCTGGATGGCTTTGTGTTCGCCTTGAACCAGGAAGGAAAATTCCTCTACATCTCAGAGACAGTCTCCATCTATCTcGGTCTCTCACAG___GTGGAGATGACGGGCAGCAGCGTCTTCG	in-frame	YIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAH|tPGRRGPAALVSEVFEQHL	.
TALL061	ZNF260	CTD-2630F21.1(2747),CTBP2P7(3129)	-/-	./-	19:36515650	19:36493787	5'UTR	intergenic	deletion/read-through	upstream	downstream	1	2	0	90	11	low	.	.	.	CCG___GCCTGCTTCCTTGTATATCCACAGGAGCTGCAAAACCTCTTAGAGTTCTAAGGGCGCTCCCTGAATTTTGGGATGCTGCTTTGTTCCCCAACCATAACATCCAAGTCCAGTGTCATTTTTC...GAAGTTTATAAACAGATAAAGACGCAACATGAAAGACTT|CCTTCACATTCACTCACCTCTCATCGACTCTCCAGAGCAACTTCCAGTCCTGCAGCCTCCATTCTTG___CTGCCAAACAGGGAAGGGCCCCCTGTCCAGTGGACACGTGACCCACGTGACCTTACCTATCATTGGAGATGGCTCACACTCCTTACCCTGCCCCCCTTGTCTTGTATCCAATAAATA	.	.	.
TALL061	CLN8	ARHGEF10	+/+	+/+	8:1771597	8:1857960	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	275	5	low	.	.	.	TTTTGCTTTGAAAATGTTGCAGTCCACCTGTCCAACTTGATCTTCCGGACATTTGACTTGTTTCTGGTTATCCACCATCTCTTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGTTGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAG|AAAATGAAATGAAATATGATACCAATAATAATGAAGAGGAAGAGGGAGAACAGTTCGATTTTGACAGTGGAGATGAAATCCCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGGAGGTGCTGG	out-of-frame	FCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLK|kmk*	.
TALL061	LHFPL3	KMT2E	+/+	+/+	7:104809185	7:105063387	intron	CDS	deletion/read-through	downstream	upstream	0	0	3	1	526	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	AGCCCGCGT...|...CCGGCTTCCCCTCCgCCATCAGTCCTTATTAGCAAAAATGAAGTAGGCATATTTACCACTCCTAATTTTGATGAAACTTCCAGTGCTACTACAATCAGCACATCTGAGG	.	.	.
TALL061	PRSS57	RNF126	-/-	-/-	19:691858	19:652884	splice-site	splice-site	deletion/read-through	upstream	downstream	3	0	0	343	248	low	.	.	low_entropy(2)	TGGGGACGTCCTCTGCTGACTGTGGCCACCGCCCTGATGCTGCCCGTGAAGCCCCCCG___CAGGCTCCTGGGGGGCCCAGATCATCGGGGGCCACGAGGTGACCCCCCACTCCAGGCCCTACATGG...GGCCAACATCACTGCGGAGGCTTCCTGCTGCGAGCCCGCTGGGTGGTCTCGGCCGCCCACTGCTTCAGCCACAG___AGACCTCCGCACTGGCCTGGTGGTGCTGGGCGCCCACGTCCTGAGTACTGCGGAGCCCACCCAGCAGGTGTTTGGCATCGATGCTCTCACCACACACCCCGACTACCACCCCATGACCCACGCCAACGACATCTGCCTGCTGCGG|GATTATATCTGTCCAAGATGCGAGTCTGGTTTTATCGAGGAGCTTCCGGAAGAGACCAG___GAGCACAGAAAATGGTTCTGCCCCCTCCACAGCTCCCA?AGACCAGAGCCGGCCACCGTTGGAG___CACGTGGACCAGCACCTGTTCACGCTGCCGCAGGGCTACGGACAGTTTGCTTTCGGCATCTTCGAT	in-frame	GQHHCGGFLLRARWVVSAAHCFSHRDLRTGLVVLGAHVLSTAEPTQQVFGIDALTTHPDYHPMTHANDICLLR|DYICPRCESGFIEELPEETRSTENGSAPSTAP?DQSRPPLEHVDQHLFTLPQGYGQFAFGIF	.
TALL061	DPY19L2P2	PMPCB	-/+	+/+	7:103269588	7:103298568	intron	splice-site	deletion/read-through/3'-3'	downstream	upstream	0	1	2	1	570	low	.	.	.	AGACTGTATCATCATGTGCATAGAAAAATCCAAAGGATTCTACAAAAAAGCTACTAGAACCACTGACTTCATCGAGATGCAG|TCATTATATTTTGGAGAGAACAGATTAAGAAGTACACAGGCTGCTACCCAAGTTGTTCTGAATGTTCCTGAAACAAGAGTAACATGTTTAGAAAGTGGACTCAGAGTAGCTTCGGAAGACTCTGGGCTCTCAACATGCACA___GTTGGACTCTGGATTGATGCTGGAAGTAGATACGAAAATGAGAAGAACA	.	.	.
TALL061	RMND5A	AC093616.4	+/+	+/+	2:86741047	2:87716775	CDS	exon	deletion	downstream	upstream	0	0	3	257	22	low	.	.	.	ACcAGATCCTGCAGAGCCACG___GCCAAGATGCTGAATTATCAGGGACACTTTCACTTGTTTTGACACAGTGCTGTAAAAGAATAAAGGATACTGTTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGTGTTTCTCG...|...ACCCAAAGGGAAGTCT___GTGCTCTCATCAGATGTTCCTTCAGGaACAGAAACTGAGGAGGAAGATGACGGCATGAATGACATGAATCACGAGGTCATGTCATTAATATGGAGTGAAGATTTAAG	.	.	.
TALL061	METRNL	TBCD	+/+	+/+	17:83085323	17:82905936	splice-site	splice-site	duplication	downstream	upstream	0	2	1	1796	188	low	.	.	.	AAAAAACTGGAGAACTGAGACTGCTGGTACCgGACGGGGACGGCAGGCCCGGCCGGGTGCAGTGTTTTGGCCTGGAGCAGGGCGGCCTGTTCGTGGAGGCCACGCCGCAGCAGGATATCGGCCGGAGGACCACAGGCTTCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTG|TCTTCCCGAGGCTGCTGTCCATGACACTGAGTCCAGATCTTCACATGAGGCATGGGTCGATTCTCGCCTGCGCAGAAGTTGCTTACGCCTTGTACAAACTTGCAGCCCAAGAGAACAG___GCCCGTCACGGACCATCTGGACGAGCAGGCAGTGCAGGGCCTGAAGCAGATTCACCAGCAG___CTCTATGATCG	in-frame	KTGELRLLVPDGDGRPGRVQCFGLEQGGLFVEATPQQDIGRRTTGFQYELVRRHRASDLHELS|vFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYD	.
TALL061	TMLHE	F8A2(43711),F8A3(29973)	-/-	./-	X:155499920	X:155426941	intron	intergenic	deletion/read-through	upstream	downstream	0	0	2	1	2	low	.	.	mismappers(2)	GTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCTCATGCCTATGTCCTGAATGGTATTGCCTAGGTTTTCTTCCAGGATTTTTATGGTTTTAGGTCTAATATTTAAGTCTTTAATCCATCTTGAATTAATTTTTGTATAAGCTGTAAGGAAGGGATCCAGTTTCAGCTTTCTaCATATGGCT...|...AAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCAGATAGTTGTAGAT	.	.	.
TALL061	RTKN	RP4-665J23.4(27155),PHKA1P1(2917)	-/-	./+	2:74427573	1:90890075	CDS	intergenic	translocation	upstream	upstream	0	0	2	45	12	low	.	.	.	CAAAAGCCCCACAAGCTCATTCTTCTAAGGCAGGCGTGATCAAGGCTGCCTGATTGTCACTGCCAACTTCTGTGACCAAGGTAGACCTCTTCTTTCTCCTGCAGGAGACTCGAGTCCGGGCAGG...|...AACAGACAGTTTGATTAAAAAACATTCTATTGATGCCAAATGTTTGTTTGAAAATTCTCTCCAGGAGAAGGCTCTTCCAGAAACTGTATACAGATCAGAGATGCCAATGAGACTCAGGCTCATTT	.	.	.
TALL061	TPK1	RP11-61L23.2	-/-	-/-	7:144620256	7:143822936	exon	intron	deletion	upstream	downstream	0	0	2	0	20	low	.	.	.	AGAACACACAGGAG...|...GTCTAATAGGCATGATTGAGATCTAAAGAGATTTTACCCTGTATTTACCAGCTTAAAATAAAAGAAAAAAAATACATTTACAATTTcAAGGCACCTCTCTGATTATCAATGCCCATATTGTTC	.	.	.
TALL061	LYRM4	RP11-530A18.1(8585),PPP1R3G(9014)	-/-	./-	6:5136864	6:5075567	3'UTR	intergenic	deletion/read-through	upstream	downstream	0	0	2	0	2	low	.	.	.	AGAAAATAAAAATGTAAAGGATCCTGTAGAAATTCAAACCCTAGTGAATAAAGCCAAGAGAGACCTTGGAGTAATTCGTCGACAG___ATT...|...CAGATTGCTGTTGCCTCCCCAGTGTGACCCACCTGCAGTCCTCTGGTGCAGCTCTGATAGAGAAATCTTTGATGCCAACTATATCCACCTACCAA___ACAGGGTCTTCCTGTCAC	.	.	.
TALL061	ACAD9	MCF2L2	+/.	-/.	3:128908532	3:183268065	3'UTR	intron	inversion	upstream	upstream	0	0	2	11	8	low	.	.	.	.	.	.	.
TALL061	MRGBP	RAB30-AS1	+/+	+/-	20:62800144	11:83074360	3'UTR	intron	translocation/5'-5'	downstream	downstream	0	0	2	239	8	low	.	.	.	TAGCAAGCAATAAAAACATGACCTCACTCTTCCTCAAAGGAGCCCCTGGTCTTCCCTGTGTGACTCAGTTCTTTCCATCTGTTTGTCCCGCTGCAAGCCTCTTTCTGCGCTGACTG...|...ATAAATAAAATTTATAATGAGTGCAGGATTTTTTCATCTTTATGGTCAGATGTCCATTAGATACAAGGATAGAAAAACTTCAAACTACCCAAACACATGACAAATTATAGAAATCACTGTATTCT	.	.	.
TALL061	PURA	CTB-131B5.5	+/+	+/+	5:140108264	5:140164650	intron	splice-site	deletion/read-through	downstream	upstream	1	0	1	2	5	low	.	.	duplicates(1)	GCTAGCGCCGCTGTCCAGGACAGGTGTGCGCGCGCGCGCCCTCCTCCCCTCCCCCCTTCCTCGCGCCTGTCTCGCGCGCGCCCTCCCTCCCGCCAGCCTGCGCCCTCCCTCACCTGCGGCAGGACAGCGCCCGCCCGCCCGGGTAAGCCCCTCGCGACCTTCCCTGCTGCCACTGCCACAGCTCCAG|GACAAAAGCCCTCACCAGAAGCCGA	.	.	.
TALL061	ENC1	RP11-37B2.1	-/-	-/-	5:74635939	8:89735263	CDS	intron	translocation	upstream	downstream	0	0	2	54	3	low	.	.	.	AAAAGAACCTGCATCCCACCAACTGCCTGGGCATGCTGCTGCTGTCTGATGCACACCAGTGCACCAAGCTGTACGAACTATCTTGGAGAATGTGTCTCAGCAACTTCCAAACCATCAGGAAGAATG...|...CCTAGAGGAAAAGTCATCATGTTTTCACCATTGAATATGTTGAAGTCATCATGTTTTCACCGTTGAATATGTTAGGTGTGTGCTTCTCATATATGGACTTTGTTGTGTTGAGGAACATTCCTT	.	.	.
TALL061	ETFB	NUDT9	-/-	+/+	19:51345311	4:87443866	CDS	intron	translocation	upstream	upstream	0	0	2	211	12	low	.	.	.	ACAGCTGACCTGAGGCTCAACGAGCCCCGCTACGCCACGCTGCCCAACATCATG___AAAGCCAAGAAGAAGAAGATCGAGGTGATCAAGCCTGGGGACCTGGGTGTGGACCTGACCTCCAAGCTCTC...|...GCCAAAGTTAGGAGTATGGACTGGAGCCATTGAAGGTTTCAGAACGGGGGAGAGGCATTCTCTTCtGAGGCAGACCTATGTGGTAAGCCAAATCATATTCAAGTCTCTTGATGAGCATGAATCAG	.	.	.
TALL061	CBX5	ZNF613	-/.	+/.	12:54233680	19:51888519	3'UTR	intron	translocation	downstream	downstream	0	0	2	107	18	low	.	.	.	.	.	.	.
TALL061	ADAM12	UROS	-/-	-/-	10:126099142	10:125815065	intron	CDS	deletion/read-through	upstream	downstream	0	0	2	0	231	low	.	.	.	AGGCCCTTGGTGTCAT...|...GTTATGTTTGGAGCAAAACAATAAAACTGAAG___TCTGGGAAAGGTCTCTGAAAGAAAAATGGAATGCCAAGTCAGTGTATGTGGTTGGAAATGCTACTGCTTCTCTAG___TGAGTAAAATTGGCCTGG	.	.	.
TALL061	ZFP41	ZNF696	+/+	+/+	8:143251340	8:143292972	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	22	23	low	.	.	mismatches(1)	CTGCCGCTGAAGGCCCCAGTCTGGACTCTCTGCCCTCTGGGTCCCCGAGCTCTGCAGCGAGCCCTGGGACCACTCATCCCTGCCCAGCCAGCTTCAGTGCCCGGGGCCGCTTGTCCCTGCCC...GTCCCAGCCATGCAGTGGGGCCCCTGGGGTGCCCTCGGCAGCTTCGGTCCAGCCTGCATCTGCCCCTCGGCCTTCCGACGTGGGCGGTGGGCCCCAGCCCCACAGACCAGCCCAGCATTCAG|AAATTGTTCCAACTGCTGGTGTTCTGCAAGATGGAGCCAGGAGGAGAGCCCACAGGTGCTAAAGAGAGCAGTACCCTGATGGAGTCC...TTGTGAAAACCAGGAAGCCAGAGAGAGGCCCGGAGGTTCCCCTCGAGGCCCGGTCACTTCTGAGAAAACTGGAGGACAGAGTGGCCTCGAGTCAGACGTCCCTCCGAACGCAGGCCCCGGCGC	.	.	.
TALL061	SEC23A	TMX2	-/-	+/+	14:39038074	11:57739258	intron	CDS	translocation	upstream	upstream	0	0	2	14	19	low	.	.	.	GGAAATTGCATGAGGAAGGGAAATCTAGGTAGAGAATAGTATGGGCTAAGATAAAAGACTACATGCAGAGCTGACTAGAAGAACATAAAACGGAAATGTGTTGTACAAGTAAATTGTGGAGGATC...|...GAG___GAGAATGTGATCCGAGAATTTAACTTAAATGAGCTATACCAGCGGGCCAAGAAACTATCAAAGGCTGGAGACAATATCCCTGAGGAGCAGCCTGTGGCTTCAACCCCCACCACAGTGTCAG	.	.	.
TALL061	LINC-PINT	ZNF418	-/-	-/-	7:130967390	19:57932648	splice-site	splice-site	translocation	upstream	downstream	0	2	0	89	9	low	.	.	.	TTTACAACCCACTAATGGATTACCCTACAGTTTGAAAAACATTGCGTTAGACCAGTTTGACTGTTGTCAAGAACCAAAAAA|AGACCATTCTCCATAACAAGGGAGTGGGATTTAAATGACTCT...GTGGGGATGTGGAGCCATGCAAGAAGGCCTTCATAGAATGACTTGGGACTGCATTGCTATTGGGAGCCATGAGAATTCTGTG___CAGGGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCC	.	.	.
TALL061	EIF4G3	TMOD3	-/-	+/+	1:20980334	15:51911040	splice-site	splice-site	translocation	upstream	upstream	2	0	0	128	227	low	.	.	.	TTCCATTCGTCCTGGTGCACAGACACCCACTGCAGTGTACCAGGCTAATCAGCACATCATGATGGTTAACCATCTGCCCATGCCGTACCCAGTGCCCCAGGGGCCTCAGTACTGTATACCACAG___T...CCCCCCCAACAATATCCAGTTCAACCACCGGGGCCAGGTCCTTTTTATCCTGGACCAGGACCTGGGGACTTCCCCAATGCTTATG|AGACTGCACAGTTCCAGCAAGATTGGGAGTCAGGCATGGA	out-of-frame	PPQQYPVQPPGPGPFYPGPGPGDFPNAY|etaqfqqdwesgm	.
TALL061	IKZF2	UBR3	-/-	+/+	2:213147708	2:169872236	splice-site	splice-site	inversion	upstream	upstream	2	0	0	174	40	low	.	.	.	ATTGATGGCTATATAACGT___GTGACAATGAGCTTTCACCCGAAAGGGAGCACTCCAATATGGCAATTGACCTCACCTCAAGCACACCCAATGGACAGCATGCCTCACCAAGTCACATGACAAGCA|GTTTTGCAAAAGGCATCAAATTAAATCAAGTTCAAATATTCCCTGTGTCCCTAAAGACTTACTGATG	out-of-frame	IDGYITCDNELSPEREHSNMAIDLTSSTPNGQHASPSHMTS|sfakgiklnqvqifpvslkty*	.
TALL061	CDK12	SSBP2	+/+	-/-	17:39501439	5:81513717	splice-site	splice-site	translocation	downstream	downstream	2	0	0	253	395	low	.	.	.	CTTTTACCTTGTATTTGAGTATATGGACCATGACTTAATGGGACTGCTAGAATCTGGTTTGGTGCACTTTTCTGAGGACCATATCAAGTCGTTCATGAAACAGCTAATGGAAGGATTGGAATACTGTCACAAAAAGAATTTCCTGCATCGGGATATTAAGTGTTCTAACATTTTGCTGAATAACAG|AGTGCTGCAGCAGCTCCCAGTCCAGTGCTAGGAAACATTCCCCCAG	out-of-frame	FYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLNNr|vlqqlpvqc*	.
TALL061	ADAMTS6	LUC7L	-/-	-/-	5:65451475	16:206147	splice-site	splice-site	translocation	upstream	downstream	0	2	0	81	451	low	.	.	.	ATGGAAACACCATTCCAGAAAATGGGATTGCCCACCACGATAATGCAGTTCTTATTACTAG|GCAGAAAAAGTACATGAGTTAAATGAAGAAATAGGAAAACTCCTTGCTAAAGCCGAACAGCTAGG...ACTTCGGTGGCAAGTTACACTTGGGGTTCATTCAGATCCGAGAGAAGCTTGATCAGTTGAGG___AAAACTGTCGCTGAAAAGCAGGAGAAGAGAAATCAGGATCGCTTGAGGAGGAGAGAGGAGAGG	out-of-frame	GNTIPENGIAHHDNAVLITr|qkkyms*	.
TALL061	GINM1	SNRPC	+/+	+/+	6:149572344	6:34757912	splice-site	splice-site	duplication	downstream	upstream	0	2	0	198	529	low	.	.	.	ACGGGCGCCCCCGAGCCGCCGCCGCTGTCCGGAGCCCCACAG___GACGGCATCAGAATTAATGTAACTACACTGAAAGATGATGGGGACATATCTAAACAGCAG|GTTTTATTGTGACTACTGCGATAC...ATTATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGACAAAACAA___CGGCTGCATTTCAACAAGGAAAGATACCTCCTACTCCATTCTCTGCTCCTCCTCCTGCAGGGGCGATGATAC	out-of-frame	TGAPEPPPLSGAPQDGIRINVTTLKDDGDISKQQ|vll*	.
TALL061	RNF138	ADSS	+/+	-/-	18:32092886	1:244437768	splice-site	splice-site	translocation	downstream	downstream	0	2	0	347	256	low	.	.	.	GTCAGGAGGTGCTCAAAACGCCCGTGCGGACCACGGCCTGTCAGCACGT|GGAGGAAATAATGCTGGCCATACAGTTGTTGTGGATTCTGTGGAATATGATTTTCATCTCTTACCCAGTGGAATAATTAATCCAAATGTCACTGCATTCATTG___GAAATGGTGTGGTAATTCATCTACCTGGATTGTTTGAAGAAGCAGAGAAAAATGTTCAAAAAGGAAAAG___GACTAGAAGGCTGGGAAAAAAG	out-of-frame	QEVLKTPVRTTACQHv|eeimlaiqllwilwnmifisypve*	.
TALL061	CCDC57	EFCAB14	-/-	-/-	17:82195263	1:46686870	splice-site	splice-site	translocation	upstream	downstream	0	2	0	519	330	low	.	.	.	CACGAATTCCGTCTGCAGGCTGACAACATGAGCAACACAGCCTTGTCCCGGGAGCTTAAG|ATGGGTGATAGATCTGCCACTCTGAAAAGACAGTCTTTGGATCAAGTCACCAACAGAACAGATACAGTAAAAATCCAAAGCATAAAG___AAAGAAGATAGTTCAAATTCTCAGGTATCCAAGCTAAGAGAGAAA	in-frame	HEFRLQADNMSNTALSRELK|MGDRSATLKRQSLDQVTNRTDTVKIQSIKKEDSSNSQVSKLRE	.
TALL061	TRMT10A	SACM1L	-/-	+/+	4:99563559	3:45703438	splice-site	splice-site	translocation	upstream	upstream	2	0	0	8	350	low	.	.	.	AGACAGCTTAATCCCGTCTCTGAAATGCGTTTGCTGGCTGGGAGCCTAGAAGGGATAGTGGGCGAGGCTCCGCCCCGTGGTGGGGCGCTTTCCGTCGGCGTGTGTTTTGGGGTTGCCATCGGCCCGTAGTgTGTGAAA|GCATATCACACCTGAAAAATTTTATGTGGAAGCTTGTGATGATGGAGCAGATGACGTACTTACCATTGACCGTGTGTCCA	.	.	.
TALL061	ZNF331	ZNF525	+/+	+/+	19:53539282	19:53375770	splice-site	splice-site	duplication	downstream	upstream	0	2	0	371	58	low	.	.	.	AGGCCAGCATCCTTCAGAAAAAGCATCCCCGAGGAGGAAGACGAATCGTTAAACATCTGAAAGGGTCAG|GGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGG...ATGCTGGAGAATTATAGGAACCTGGTCTCCCTGG___GATTTCTATGATGACTGGATTTTGAATTTTGTGGAACGCTTTTTCTCCATCTACTAAGGTGATGTGGTTTTAATCTTTCATTCTGTTCTAGT	.	.	.
TALL061	TAF7	COG5	-/-	-/-	5:141320518	7:107230691	splice-site	splice-site	translocation	upstream	downstream	0	2	0	1018	133	low	.	.	.	CGGTGAAACTGAACTTATAATCGTCACTGGATT|ATGGAGTTGGCTGTGGGTCCATTCTGTAGACGAGTATCTGATTTAGGAAAGTCCTATCGGATGCTGAGATCATTCAG___ACCTCTGCTCTTCCAGGCAAGTGAACATGTAGCCAGTAGT	.	.	.
TALL061	METRNL	SPRY1	+/+	+/+	17:83085323	4:123401537	splice-site	splice-site	translocation	downstream	upstream	0	2	0	1796	986	low	.	.	.	GCTTCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTG|GATTTCAGATGCATGCCAGGTTTCCACTGATTGCCAGAACTCGAGATCACTACACATGGATCCCCAAAATCAACATGGCAGTGGCAGTTCGTTAGTTGTGATCCAGCAGCCTTCTTTGGATAGCCGTCAGAGATTAGACT	out-of-frame	FQYELVRRHRASDLHELS|gfqmharfpliartrdhytwipkinmavavr*	.
TALL061	TAPBPL	TRDC	+/+	+/+	12:6462243	14:22465533	splice-site	splice-site	translocation	downstream	upstream	2	0	0	101	5680	low	.	.	.	CCCATCTCCATGAAGACCGCACAGCGCGTGTAAGCCAGCCCAGCTGACCTAAAGCGACATGAGACTACTAGAAAGAAACGACACCCTTCCCCAAGCCCCCACAGCTACTCCAACCCAAACAACAACCAAGCCAGTTTAATG|GCTGACTGGCATGAGGAAGCTACACTCCTGAAGAAACCAA	out-of-frame	HLHEDRTARVSQPS*pkat*dy*kettpfpkppqllqpkqqpsqfn|g*	.
TALL061	PQLC1	KCNG2	-/-	+/+	18:79919184	18:79899040	splice-site	splice-site	inversion	upstream	upstream	1	0	1	247	15	low	.	.	.	AGTCAAGGTTGCCCCCAGGCGGTCCTTCCTGG___TGCTTTGAATATGTTATTCCACTGCCCTCTGGACTCCATTGTTTCTGATGAGAAGTCAGCTGTTAATCTTATTGGGGTTTCCTT___ACTTCGACC...GGGCTTCCTGGCTGTGCTGACCGAAGCCATGCTGGGTGTGCCCCAGCTTTACCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|GGCGAGTGCTCCCCCAAGTGCCGCAGCCTGTTCGTGCTGGAGACCGTGTGCGTGGCCTGGTTCTCCTTCGAGTTCCTGCTGCGCTCCCTGCAGGCCGAGAGCAAGTGCGCCTTCCTGCGCGCGCCACTCAACATCAT	out-of-frame	GFLAVLTEAMLGVPQLYRNHRHQSTEGMr|asappsaaacscwrpcawpgspsssccapcrprasapscarhsts	.
TALL061	EP400NL	SFSWAP	+/+	+/+	12:132105304	12:131714822	splice-site	splice-site	duplication	downstream	upstream	0	1	0	109	249	low	.	.	.	TACAAGCATATCTTAGGCAGAATGATTTGGACATTGAAGAAGAGGAAGAGGAGCACTTTGAAGTCATTAATGATGAG|AGGAAGAATACAAGCGATTGAGTGAAGCACTAGCAGAGGATGGGAGCTACAATGCCGTGGGGTTCACTTACGGTAGCGACTATTACGACCCGTCAGAGCCGACGGAGGAGGAGGAGCCTTCCA	out-of-frame	QAYLRQNDLDIEEEEEEHFEVINDE|rkntsd*	.
TALL061	MICAL2	TRIM21	+/+	-/-	11:12162419	11:4390458	splice-site	splice-site	inversion	downstream	downstream	0	1	0	291	81	low	.	.	.	GGAAAGCCAAAGCCCTGTGGTACAAATTGGATAAGCGTGGTTCCCACAAAGAGTATAAGCGAGGGAAGTCGTGCACGAACACCAAG|CCAAACCCCCTAAAGGTCTCCACACTGCTGTTTAACGG...GCTTGACAATGATGTGGGAGGAGGTCACATGCCCTATCTGCCTGGACCCCTTCGTGGAGCCTGTGAGCATCGAGTGTGGCCACAGCTTCTGCCAGGAATGCATCTCTCAGGTTGGGAAAGGTGGG	out-of-frame	KAKALWYKLDKRGSHKEYKRGKSCTNTK|pnplkvstllfn	.
TALL061	CHD9	BAZ2B	+/+	-/-	16:53307953	2:159332686	splice-site	splice-site	translocation	downstream	downstream	1	0	0	108	368	low	.	.	.	CAGAATACAGCGAgCCCAGTGTACCCACTCCCCCAGGTGCCGGTGTTAAAGAAGAACATGATCAGTCAACACAGATGTCAAAGGTGAAGAAGCATGTACGAGAAAAGGAGTTTACAGTGAAAATCAAAGAC|TACTGCCAAATCTGTCGAAAGGGAG	in-frame	EYSePSVPTPPGAGVKEEHDQSTQMSKVKKHVREKEFTVKIKD|YCQICRKG	.
TALL061	RP11-154H12.3	NFATC1	+/+	+/+	18:79792801	18:79433579	splice-site	splice-site	duplication	downstream	upstream	0	1	0	16	78	low	.	.	.	GTCCGAAAGACAGACAGAAGCCCGGGGACaGACGTCCGTGGGAGCTCCTCCCGCACTGCAGAAG|CCCGACCCTGCCCGCCCTGGACTGGCAGCTGCCGTCCCACTCAGGCCCGTATGAGCTTCGGATTGAGGTGCAGCCCAAGTCCCACCACCGAGCCCACTACGAGACGGAGGGCAGCCG	.	.	.
TALL061	RP11-154H12.3	NFATC1	+/+	+/+	18:79792801	18:79527528	splice-site	splice-site	duplication	downstream	upstream	0	1	0	16	44	low	.	.	.	CGGGGACTGACGTCCGTcGGAGCTCCTCCCGCACTGCAGAAG|TAAATGAAATAATACGAAATGACCTCTCCAGCACGAGCACCCACTCCTAGTTGCCACATTGG...TGAATAAATAAACTGAACTCACACCTGGTACCACTCAGAACCTCCAACTGACTGAATGCCAGGAGCTGAACATTAATATGTGCAAAGATTGGCTCTCCAACAAGAAGGAAAGCAGGGAGGAA	.	.	.
TALL061	IL4R	SF3B2	+/+	+/+	16:27342259	11:66058830	splice-site	splice-site	translocation	downstream	upstream	1	0	0	312	646	low	.	.	.	CTGTGAGCTGCCTGGTCCTGCTGCAGGTGGCAAGCTCTG___GGAACATGAAGGTCTTGCAGGAGCCCACCTGCGTCTCCGACTACATGAGCATCTCTACTTGCGAGTGGAAGATGAATGGTCCCACCAATTGCAGCACCGAGCTCCGCCTGTTGTACCAGCTGGTTTTTCTGCTCTCCGA|AAAAACCGGAAGCGTAGGAACCGAAAGAAGAAGAAAAAGCCCCAGCGGGTGCGAGGGGTGTCCTCTGAG	out-of-frame	VSCLVLLQVASSGNMKVLQEPTCVSDYMSISTCEWKMNGPTNCSTELRLLYQLVFLLSe|ktgsvgterrrkspsgcegcpl	.
TALL061	NCKAP1L	KPNB1	+/+	+/+	12:54517938	17:47680020	splice-site	splice-site	translocation	downstream	upstream	1	0	0	723	904	low	.	.	.	CAGAGCTACTTTTCTTGTTGGAGGGGATTAGGTCTCTGGTCCGAAGACACATCAAAGTGATACAGtAATACCACCTTCAGTACTTGGCAAGATTTGATGCTCTTGTGCTCAGTGACATCATTCAG|CGGATGTGATGCTGGTACAACCCAGAGTAGAATTTATTCTGTCTTTCATTGACCACATTGCTGGAGATGAGGATCACACAG	out-of-frame	ELLFLLEGIRSLVRRHIKVIQ*YHLQYLARFDALVLSDIIQ|rm*	.
TALL061	FBRSL1	NOC4L	+/+	+/+	12:132525823	12:132151258	splice-site	splice-site	duplication	downstream	upstream	0	1	0	257	103	low	.	.	.	AAAGGGGGCGACCGGGACAGTGACGACGACAGCGTCCTCGAAGCCACCAGCTCCCGGGACCCGCTCAGCGAT|GGAGTACCCTGACTTCTACCGGAAGCTCTACGGCCTCTTGGACCCCTCTGTC...CGCGCCCGCTTCTTCCACCTGGCTGACCTCTTCCTGTCCTCCTC___CCACCTCCCCGCCTACCTGGTGGCCGCCTTCGCCAAGCGGCTGGCCCGCCTGGCCCTGACGGCTCCCCCTGAGGCCCTGCT	out-of-frame	KGGDRDSDDDSVLEATSSRDPLSD|gvp*	.
TALL061	TTYH3	C7orf50	+/+	-/-	7:2632278	7:1010143	splice-site	splice-site	inversion	downstream	downstream	0	1	0	219	256	low	.	.	.	AGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAG|GGCGAAGCTGTGCTCAGGCCCGGGCTGGACGCAGAGCCAGAGCTGTCCCCAGAGGAGCAGAGGGTCCTGG...GCAG___ATGGGCCCAAAAGCACAAGAACTGGAGGTTTCAGAAGACGAGGCAGACGTGGCTCCTGCTGCACATGTATGACAGTGACAAG___GTTCCCGATGAGCACTTCTCCACCCTGCTGGCCTACCT	in-frame	SWEATSSQFRPEDTDYQQ|GEAVLRPGLDAEPELSPEEQRVL	.
TALL061	SLC7A5	ZFPM1	-/-	+/+	16:87851724	16:88528032	splice-site	splice-site	inversion	upstream	upstream	0	1	0	603	50	low	.	.	.	CCGCCACCCGGGTCCAGGATGCCTTTGCCGCCGCCAAGCTCCTGGCCCTGGCCCTGATCATCCTGCTGGGCTTCGTCCAGATCGGGAAGG|ATGACGCACTCTGGTGCAGGGTCACCAAtCCGGTG...CCTGTGAAGAAGGAGCCAGCAGAGCCCACGTGCCCGGCCCCTGCACACGACCTCCAGCTCCTGCCCCAGCAGGCCGGGATGGCCTCCATCCTTGCCACCGCAGTGATCAACA___GCAGCAGTGTCCT	in-frame	ATRVQDAFAAAKLLALALIILLGFVQIGK|dDALWCRVTnP	.
TALL061	ZFPM1	SLC7A5	+/+	-/-	16:88453678	16:87841155	splice-site	splice-site	inversion	downstream	downstream	0	1	0	13	761	low	.	.	.	CGGAGACATGTCCAGGCGGAAACAGAGCAACCCCCGGCAGATCAAGC|GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGAACATTGTGCTGGCATTAT...ATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTGGCCATCATCATCTCCCTGCCCATCGTGACGCTGGTGTACGTGCTGACCAACCTGGC	in-frame	MSRRKQSNPRQIK|rDVSNLDPNFSFEGTKLDVGNIVLAL	.
TALL061	GNB1	EHMT1	-/-	+/+	1:1890820	9:137716626	splice-site	splice-site	translocation	upstream	upstream	0	1	0	239	151	low	.	.	.	CGACGACCTGCCGAGCGGCGGCCGAGGCGGCGGTGTGGGCGCGTCAGGCCGCGACGAGGGCGCTGAG|AGACACCTATGGCTGCCGATGAAGGCTCAGCAGAGAAACAGGCAGGAGAGGCCCACATGGCTGCGGACGGTGAGACCAATGGGTCTTGTGAAAACAGCGATGCCAGCAGTCATGCAAATGCTGCAAAGCA	.	.	.
TALL061	SRPK2	KMT2E	-/-	+/+	7:105388648	7:105038126	splice-site	splice-site	inversion	upstream	upstream	0	1	0	40	284	low	.	.	.	CATTCAGGCCCGAAAGCGGAGGCCGAAAAGAGAGAAACATCCGAAAAA|GTCTATTCTGGATAAGCAGGTTTTGTGAAGACATTTATTCTTTCTTGGACCTCAGATTTACCAGACATCTCATG___GGTTTGTGGATGCACTTAGATGTTTGCAATGAGCACTGTGGCTGGCATGCCCCAGTGTTTTGGATACCAATGCATAGGACTCCATAGTAATCGA	out-of-frame	IQARKRRPKREKHPKk|sildkqvl*	.
TALL061	ANKRD33B	CELF2	+/+	+/+	5:10618462	10:11314139	splice-site	splice-site	translocation	downstream	upstream	0	1	0	105	422	low	.	.	.	CAGCCCTAATCACAGCTGCACAGGCAG|TGGCTGCTTCAACCCCCAACTCCACTGCTGGTGCAGCCATGAACTCCTTGACCTCTCTtGGGACTCTGCAAGGACTGGCTGGAGCCACTGTTGGACTG...ATGGCGGCTCTGAATGGAGGACTTGGCGCCACAGGCTTGACGAATGGCACGGCTGGCACCATGGACGCCCTCACCCAGGCCTACTCAGGAATTCAACAGTACGCAGCCGCCGCGCTGCCCACTCT	in-frame	ALITAAQA|vAASTPNSTAGAAMNSLTSLGTLQGLAGATVG	.
TALL061	STK40	THRAP3	-/-	+/+	1:36358239	1:36259382	splice-site	splice-site	inversion	upstream	upstream	1	0	0	347	227	low	.	.	.	CTGACCCTGGAGGAGAGGGGGGACCAAGGCATAGAGAGCCAGGAAGAGCGGCAGGGCAAGATGCTGCTGCACACCGAGTACTCACTGCTGTCTCTCCTGCACACGCAGGATGGCGTGGTGCACCACCACGGCCTCTTCCAG|AAGTGTATGCTGACTTGTAAAGTGAAGAAGCCAGTGGTGCTGCGGGTGTTCTTTTGGGGTAGTGTCTGGGATCCAGTACGAGTTGAATCATTGTTCAAAT	out-of-frame	LTLEERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQ|kcmltckvkkpvvlrvffwgsvwdpvrveslfk	.
TALL061	SCO2	PPP6R2	-/-	+/+	22:50526246	22:50434966	splice-site	splice-site	inversion	upstream	upstream	0	1	0	647	254	low	.	.	.	CTCGGGAAGTCCCGCAGAACGCCGGCAGCTGCTGCCTCGCGCCCGGGAGCAGGAGGAGCTGCTGGCGCCCGCAGATG|GGCAGCGGGTGGCATGAGACGTGGGAACATGGGCCACCTCACACGGATCGCCAACGCGGTGGTGCAGAACCTGGAGCGGGGCCCTGTGCAGACGCACATCAGCGAGGTCATCCGAG___GGCTCCCTGCGGACTGCCGTGGCCGCTGGGAGAGCTTCGTG	out-of-frame	SGSPAERRQLLPRAREQEELLAPAD|gqrva*	.
TALL062	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	10	105	0	198	203	high	.	.	duplicates(8),low_entropy(3),mismappers(1),mismatches(21)	AAACTGTGCAAACCCTGACTGTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACT	.	.	.
TALL062	CWF19L1	PKD2L1	-/-	-/-	10:100245799	10:100299718	splice-site	splice-site	duplication	upstream	downstream	18	12	2	173	39	high	.	.	duplicates(1),mismatches(1)	AAACCAAGATACCATTTTGCTGCTTTGGAAAAGACCTATTATGAGAGGCTTCCATATCG___AAACCATATCATTCTACAGGAAAATGCACAGCATGCCACCCGGTTTATAGCTCTGGCAAATGTTGGAAATCCAGAAAAGAAAAAG___TATCTTTACGCGTTCAGTATTGTTCC...GCAGAACTGGTAAAACAGCCTCCGGATGTCACTGAAAACCCTTACAGAAAATCTGGGCAGGAAGCATCCATAGGAAAGCAAATTCTTGCCCCTGTG___GAAGAATCAGCCTGTCAGTTTTTCTTTGATTTAAATGAAAAGCAGGGAAGaAAGCGTTCATCCACAGGTAGAGATAGCAAATCTTCTCCTCATCCAAAGCAGCCTCGCAAACCTC|TGACCTATGGAATGACAAGCTCCAGTGCTTATTACTACACCAAAGTGATGTCTGAGCTCTTCTTACATACTCCATCAGACACTGGAGTCTCCTTTCAGGCCATCAGCAGCATGGCGGACTTCTGGGAT___TTTGCCCAGGGCCCACTACTGGACAGTTTGTATTGGACCAAATGGTACAACAACCAGAGCCTGGGCCATGGCTCCCAC...AGGCTGCGGCAGCTAAAGGTCCGCAATGACTCCTGTGTGGTGCATGAAGACTTCCGGGAGGACATTCTGAGCTGCTATGATGTCTACTCTCCAGACAAAGAAGAACAACTCCCCTTTGGGCCCTT	in-frame	AELVKQPPDVTENPYRKSGQEASIGKQILAPVEESACQFFFDLNEKQGRKRSSTGRDSKSSPHPKQPRKP|lTYGMTSSSAYYYTKVMSELFLHTPSDTGVSFQAISSMADFWDFAQGPLLDSLYWTKWYNNQSLGHGS	.
TALL062	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	6	12	0	52	39	high	.	.	duplicates(1),mismatches(1)	CTGGCACCACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTG...CTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAG...___GCAATTTATAGCACTGATCTGTCATCAATACCAC	out-of-frame	LLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL062	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	0	52	21	medium	.	.	low_entropy(1)	GGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGA...___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTAC	out-of-frame	GKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL062	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	52	105	medium	.	.	duplicates(1),mismatches(1)	TCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGgTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAAC	out-of-frame	IVTTACGSLREEIQPGDIVIIDQFIDs|vpfdeknkphsdstaeikektsvfwppdicylclkn*	.
TALL062	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	11	1	0	49	58	high	.	.	duplicates(1),low_entropy(3),mismappers(17),mismatches(1)	CTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG___...CCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGGATCTGGACCCCTACTATATCAATAAGAAA___ACGTTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGA	.	.	.
TALL062	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	4	2	2	180	58	low	.	.	mismappers(2)	AGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACA...GAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGA	.	.	.
TALL062	FP236383.8	bP-2189O9.2(105672),MIR3648-1(351)	+/+	./+	21:8391168	21:8986648	exon	intergenic	deletion	downstream	upstream	111	1	0	144	83	medium	.	.	duplicates(16),low_entropy(1),mismappers(1),mismatches(11)	CGGTTCTCGGTGGGGGCCGAGGGCCGTCCGGCGTCCCAGGCGGGGCGCCGCGGGACCGCCCTCGTGTCTGTGGCGGTGGGATCCCGCGGCCGTGTTTTCCTGGTGGCCCGGCCGTGCCTGAG|GTTTCTCCCCGAGCCGCCGCCTCTGCGGGCTCCCGGGTGCCCTTGCCCTCA	.	.	.
TALL062	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	11	3	98	30	medium	.	.	low_entropy(1),mismatches(1)	CAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGG...___TGTCTGAGTGCTATGAAGATTGC	.	.	.
TALL062	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	6	5	1	181	273	medium	.	.	duplicates(2)	CGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL062	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	29	273	low	.	.	duplicates(6),read_through(19)	GAACG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACC	out-of-frame	MKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL062	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	8	1	0	145	29	medium	.	.	duplicates(2),mismappers(1),mismatches(3)	AGCTGAAaGTGCTGGGTGtCAACCTCTGGTGtCCGTACCTGATGCACGgACACCCCGCCTAtCTGTACTCGTGGGcG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGC	.	.	.
TALL062	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	4	0	13	64	medium	.	.	low_entropy(1)	CAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCGGTACTTCTTGGCTGTTTGG___...GTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGG	.	.	.
TALL062	MTAP	CDKN2A	+/+	-/+	9:21818202	9:21994151	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	1	4	0	52	7	medium	.	.	.	CTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCCGTGAGCCGCGGGATGTGAACCACGAAAACCCTCACTCGCGGCGGGCCGCACGCGCGCCGAATCCGGAGGGTCACCAAGAACCTGCGCACCATGTTCTCGCCGCCTCCAGGGCCGAGCTCGGCAGCCG	out-of-frame	LKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|krllp*	.
TALL062	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	9	64	medium	.	.	low_entropy(1),mismatches(1)	CGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTG	.	.	.
TALL062	ZNF616	DSCR3	-/-	-/-	19:52139732	21:37232451	splice-site	splice-site	translocation	upstream	downstream	0	2	0	10	133	medium	.	.	.	ATAGCCCCTTCGCCCCTGCAACAGGCACTTCTCCCCAC|CCTCAGAAGGGGAAGTTTACTCCCAGTCCCGTGGACTTCACGATTACACCTGAAACCTTACAGAACGTCAAAGAG___AGAGCTTTGCTTCCCAAATTTCTCCTTCGAGGACATCTCAACTCAACAAACTGTGTCATCACGCAGCCACTAACGGGA	.	.	.
TALL062	ARHGEF7	ING1	+/+	+/+	13:111153991	13:110719229	splice-site	splice-site	duplication	downstream	upstream	0	1	1	75	246	medium	.	.	.	TGGTGCAGCCCCGGAGGAAGAAAAAAGG___GTCTACCCCGAGCCCCGGAGCGAGAGCGAGTGCCTGAGCAACATCCGCGAGTTCCTGCGCGGCTGCGGGGCTTCCCTGCGGCTGGAG|AGATCCTGAAGGAGCTAGACGAGTGCTACGAGCGCTTCAGTCGCGAGACAGACGGGGCGCAGAAGCGGCGGATGCTGCACTGTGTGCAGCGCGCGCTGATCCGCAGCCAGGAGCTGGGCGACGAGAAGATCCAGATCGTGAGCCAGATGGTGGAGCTGGTGGAGAACCGCACGCGGCAGGTGGACAGCCACGTGGAGCTGTTCGAGGCGCAGCAGGAGCTGGGCGACACAGCGGGCAACAGCGGCAAGGCTGG	out-of-frame	gaapeeekrVYPEPRSESECLSNIREFLRGCGASLRLE|rs*	.
TALL062	RP11-554D15.1	EEF1A1	+/-	-/-	6:74234129	6:73519473	intron	CDS	deletion/3'-3'	upstream	downstream	0	0	12	0	65535	low	.	.	duplicates(189),inconsistently_clipped(1),low_entropy(50),mismappers(8),mismatches(44)	ACTTGGATATAC|TGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGGACATCTCAG___GCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAG	.	.	.
TALL062	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	0	6	1	242	401	low	.	.	mismatches(1)	CTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCAC?AGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAA	.	.	.
TALL062	CD1B	CD1C(1408),CD1B(32913)	-/-	./-	1:158329852	1:158295038	splice-site	intergenic	deletion/read-through	upstream	downstream	1	5	0	921	14	low	.	.	mismatches(1)	AGAAATTCTGTGCACTAATCATACAATATCAAGGTATCATGGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|GTCACAGGGTGACTAAGGGTGCAGGAGAGTCACCTAGGGCCTCCTGGTGCCAAGGAAATGAGCAATGGAAGCAGGACCCAAGCTGG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCTGGGCAATGGAATGTGTGGTGTTGGAAGCATTAGCCAGC	out-of-frame	KFCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQRQ|ghrvtkgagespraswcqgneqwkqdpswercncpis*	.
TALL062	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	1	4	0	30	11	low	.	.	duplicates(1)	CTGCTCTCTGTAGATAACAGCAATGGCAGGCATTCCGGACCATGTGTTTGCAGTGGAGAATGGCTTCAAGGCCCTGAGAAGCACCATTGATGCCGTGAGTGGGTGGAGATGAGGGGCTGGGGGC...GTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAAC...___TGTTTCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAGGACT	.	.	.
TALL062	MYB	MYB(16883),MIR548A2(3104)	+/+	./+	6:135196000	6:135236056	splice-site	intergenic	deletion/read-through	downstream	upstream	4	1	0	1242	275	low	.	.	mismatches(1)	CCTTAAGTCTGAAATAACATTCACAAAGATTTCTGCAGGAGCCAAATTTGGTTGGTGGTGTTGTCACAGTGAGGCTCTTTGGGCTGTGCGGCACCTCATGACCATATTGGCTACACCCATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTT	out-of-frame	lkseitftkisagakfgwwcchsealwavrhlmtilatpivfaasnqtfvfisltl*fqRHYNDEDPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|satgsefcqqpeggrklilllkdvqisapssiclh	.
TALL062	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	10	6	low	.	.	duplicates(1)	ACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTtTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCAC	out-of-frame	TGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseep	.
TALL062	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	67	56	low	.	.	low_entropy(1),mismatches(1)	GATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTT	out-of-frame	FFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL062	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	91	56	low	.	.	.	CTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTC...TTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTATCTCTGTTTCTGGGGTTTTT	out-of-frame	LTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL062	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	69	56	low	.	.	duplicates(1)	AGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGAT...GGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTT	in-frame	GELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIF	.
TALL062	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	1	0	64	10	low	.	.	mismappers(1)	AGGCACCAAGtCAGATTCGtTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTAC...CCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCG	out-of-frame	GTKsDSfFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL062	EEF1A1P6	FAM126A	-/.	-/.	7:22511265	7:22911735	exon	intron	deletion	downstream	upstream	0	0	4	653	0	low	.	.	duplicates(1),mismappers(2),mismatches(8)	.	.	.	.
TALL062	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511609	7:23329947	exon	intron	deletion	downstream	upstream	0	0	4	20118	0	low	.	.	low_entropy(1),mismappers(2),mismatches(14)	.	.	.	.
TALL062	PARD3B	EEF1B2	+/+	+/+	2:205575416	2:206160027	intron	CDS	deletion	downstream	upstream	0	0	4	0	9014	low	.	.	mismappers(1),mismatches(2)	AGCGCTCTCT...|...CGATTACCTGGCGGACAAGAGCTACATCGAGGG___GTATGTGCCATCACAAGCAGATGTGGCAGTATTTGAAGCCGTGTCCAGCCCACCGCCTGCCGACTTGTGTCATGCCCTACGTTGGTATAATC	.	.	.
TALL062	LINC01225	LCK	+/+	+/+	1:31536409	1:31568166	splice-site	intron	deletion/read-through	downstream	upstream	3	0	1	284	156	low	.	.	mismappers(3),mismatches(1)	AATCGGATGATGGCAACTTTCACTGGGCAGTGAAAGGTCAG___TTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CTACTCAGGAGGCGGAGGCAAAGGATCGCTTGAA___GAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCAtTGtACTaCAGCCTGGGCaAcAGAGcGAG	.	.	.
TALL062	KCNJ12	KCNJ12(20596),PDLIM1P2(4365)	+/+	./+	17:21419513	17:21440468	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	3	0	10	4	low	.	.	.	CCTGATTATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|CACTGCTGGTACAAACACAGAAGAGCAATTGATCCTCACTGGTGTTCTTCAGGGACAGCTGGTG___CATGTAAACACTGC...___GGTGTATGAAGAAAGGGCTTCAGCAGAAACAGAGGCTGAAGCCTGCGTGCTGGGGGCCGAGAGGCC	.	.	.
TALL062	RP11-286B14.1	EEF1A1P11	+/.	+/.	1:95767995	1:96447458	intron	exon	deletion	downstream	upstream	0	0	3	0	5	low	.	.	low_entropy(1),mismappers(1),mismatches(9)	.	.	.	.
TALL062	KLRB1	RP11-705C15.2	-/+	+/+	12:9622436	12:9633425	intron	exon	deletion/read-through/3'-3'	downstream	upstream	1	0	2	33	36	low	.	.	mismappers(1)	CTGGAAGACATACAAATGCCGAAAGGAAAATTAAAGCCACTTACCCCGAGGAAGAGATGAAGGTGAAGAACTTTCTGGGCCTGAGTCTGTGG...ACGCTGTCACCCAGGCTGGAGTGGAATGGCgCTATCTTGACTCACTACAGCCTTAATCTCCTGAGCTCAAGCAATCCTCTCACCTCAGGCTCCTGAGTAGCTGGGACTACAA|ATGGGTTCTCTACCTGGC...CCATGTTGAACATGCCTGGCCCTCAG___ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAG	.	.	.
TALL062	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	3	0	8	4	low	.	.	.	TGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAAC...GCCTGTAATCCCAGCACTTTGGGAGGCCGAG___TCCACCAGGGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGA	.	.	.
TALL062	ST6GALNAC3	RP4-706A16.3	+/.	+/.	1:76399965	1:77129504	intron	exon	deletion	downstream	upstream	0	0	2	1	544	low	.	.	mismappers(1)	.	.	.	.
TALL062	DUSP7	SFMBT1	-/.	-/.	3:52049605	3:52909504	3'UTR	intron	deletion	downstream	upstream	0	0	2	90	0	low	.	.	.	.	.	.	.
TALL062	HP1BP3	EIF4G3	-/-	-/-	1:20744177	1:20944594	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	943	0	low	.	.	mismappers(1),mismatches(1)	...ATCAATTTCTAGGTATTTTTCACTGGCCCAAAGTATTGCATTCCCTTAACAGCAAGCACAAGTTCTCTATATCACTTGTTTTTTGTTGTTGTTGTTG|...AGAAATTGATT	.	.	.
TALL062	TFAP4(34382),GLIS2(7304)	TFAP4	./-	-/-	16:4307457	16:4268081	intergenic	splice-site	deletion/read-through	upstream	downstream	1	0	1	54	4	low	.	.	duplicates(1)	GGCGCCGACAGCATCCTCCGGGGGTAGGCGCCCACAGTCATTCTTTCCATCGCTGCGGACACGGGAGTCAGAAG?GAAACAGTCCTGTCCTCGTGGGGCTTACGTTCCAGGCGCAAGAGCCACAG|ACGGAGGAAACCGA	.	.	.
TALL062	KIAA1244	HEBP2	+/+	+/+	6:138311867	6:138404581	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	1	0	low	.	.	.	AGGGGTGCAAGC...|...AGGACGCCGGCCCCCAG___CCCGGAAGTTATGAGATCCGACACTATGGACCAGCCAAGTGGGTCAGCACGTCCGTGGAGTCTATGGACTGGGATTCAGCCATCCAGACGGGCTTTAC	.	.	.
TALL062	STK3	HNRNPM	-/-	+/+	8:98749276	19:8455405	splice-site	splice-site	translocation	upstream	upstream	0	2	0	15	1073	low	.	.	.	GGCTCTGTCTCAGACATAATTAGATTACGAAACAAGACA|TGAAGGAGAACGACCTGCTCAGAATGAGAAGAGGAAGGAGAAAAACATAAAAAGAGGAGGCAATCGCTTTGAGCCATATGCCAATCCAACTAAAAGATACAGAGCCTTCATTACAAACATACCTTTTGATGTGAAATGGCAGTCACTTAAAG	out-of-frame	GSVSDIIRLRNKT|*	.
TALL062	NEK8	HSPA8	+/+	-/-	17:28741571	11:123059762	splice-site	splice-site	translocation	downstream	downstream	2	0	0	33	10388	low	.	.	.	GTCGATTGGGAAGGAGGGATGAGGATGCCGGACTCCCTCGGCCAGTGCAGTTGGATGAGACACACCCTTACACGGTGACTTCCGTGTCCTGTTGCCATGGAAACACCCTCCTGGCTGTTCGAT|CACCCAGGCCAGTATTGAGATCGATTCTCTCTATGAAGGAATCGACTTCTATACCTCCATTACCCGTGCCCGATTTGAAGAACTGAATGCTGACCTGTTCCGTGGC	out-of-frame	RLGRRDEDAGLPRPVQLDETHPYTVTSVSCCHGNTLLAVR|sprpvlrsilsmkestsipplpvpdlkn*	.
TALL062	MBD5	ORC4	+/+	-/-	2:148342336	2:147943522	splice-site	splice-site	inversion	downstream	downstream	1	0	0	11	179	low	.	.	.	AATTTTTTGGAG___AGAGAAGAGGTACTCCCTTATAGGGACTCGTAAAGACATAGAGCATCTGGAAATTAACTGCCTCCATTACACTGCTGAGTCACACACAACGCTTGTTATGTTTTCATCACTTCTCTCCAGAAG|TATCTCTCAGAAGATAGAAGTGTGCAAGAAGTACTACAGAAGCATTTCA	.	.	.
TALL062	MBD5	ORC4	+/+	-/-	2:148178793	2:147975975	splice-site	splice-site	inversion	downstream	downstream	0	1	0	13	96	low	.	.	.	ATTGAAGGCTTTATGGTTTACAGACAAGATCTTTAGAAGATAAGCACTAAAG|GATTTGAATTTGTTGAAATGAGCAGTCGTAAATCAAAGAGTAACAGCTTAATTCACACAGAGTGCCTTTCAC...ATCGGACCCCGAGGATCAGGAAAAACTATG___TTAATAAgTCATGCTTTGAAAGAACTCATGGAAATAGAAGAAGTGAGTGAAAATGTATTACAAGTTCACTTAAATG___GACTGCTGCAGATCAATG	.	.	.
TALL062	ITGB2	VRK3	-/-	-/-	21:44910284	19:49976784	splice-site	splice-site	translocation	upstream	downstream	0	1	0	920	576	low	.	.	.	CGGGAATGCATCGAGTCGGGGCCCGGCTGCACCTGGTGCCAGAAGCTG|AACTTTCCATTTGCAGTGTGCAACAGAAAAAAAAAAATGAAGcAATGTGACTCAAGGCCTGCTGTTTAATCACAGATAAGCTTCTAGAACAAGCCCTaGAATGTGCATTCCTGCCACTGGTTTCAGGATACTCATCAGTCCTGATTAGCC	out-of-frame	RECIESGPGCTWCQKL|nfpfavcnrkkkmkqcdsrpav*	.
TALL062	BCL11B	C17orf62	-/-	-/-	14:99231345	17:82446696	splice-site	splice-site	translocation	upstream	downstream	1	0	0	48	605	low	.	.	.	GGCGCTCTCCCGCCCTGCCTCCCCCTGCCGTGCTGCAGCGCGCGCCCGGTCTCGGGTGACGGGACTCAGGGTGAGGGTCAGACGGAGGCTCCCTTTGGATGCCAGTGTCAGTTGTCAG|ATAGCCTGGGCTGGAAGCTCTTC	in-frame	GALPPCLPLPCCSARPVSGDGTQGEGQTEAPFGCQCQLS|dSLGWKL	.
TALL062	BCL11B	C17orf62	-/-	-/-	14:99257471	17:82445960	splice-site	splice-site	translocation	upstream	downstream	0	0	0	186	781	low	.	.	mismatches(1)	TCGGGATCCAAtTCACtCCCGACGAAGATGACCACCTGCTCTCACCCACGAAAGGCATCTGTCCaAAGCAGGAGAACATTGCAG|GAAGCCATCTTCGACAAGAGCACAGGGAAGGTTGTTTTG...ACAAGAAGCTGCTGACTCTTTTCAGAGCTGGCCACGACCAGG___TGGTGGTCCTGCTCCATGATGTCCaTGATGTGAGCGTGGAGGAGGAGAAGGTCCGGTACTTCGGGAAAGGCTACATGGTG	out-of-frame	GIQfTPDEDDHLLSPTKGICPKQENIA|gshlrqehregcf	.
TALL062	USP20	NAA35	+/+	+/+	9:129863299	9:86003585	splice-site	splice-site	duplication	downstream	upstream	0	1	0	671	51	low	.	.	.	AGATAAGAAGCCAGCCCTGTGCAAGAGCTACCAGAAGCTGGTCTCTGAGGTCTGGCATAAGAAACG|GATTTTTTCTGTGAATTTAGTGAACAGTCACCATGTGTTCTTTCAAGATCTCTGTTACAA___ACCACTTTCCTGGTGGATAACAAAAAGGTCTTTGGAACTCATCTCATGCAAGACATGGTGAAAGATGCACTTCGGTCTTTTGTCAGTCCTCCGGTGCTTTCCCCCAA___GTGCTACCTATAT	out-of-frame	DKKPALCKSYQKLVSEVWHKKr|ifsvnlvnshhvffqdlcykplswwitkrsleliscktw*	.
TALL062	DSCAML1	FXYD2	-/-	-/-	11:117776791	11:117822717	splice-site	splice-site	duplication	upstream	downstream	1	0	0	13	13333	low	.	.	.	CCGGgAAGATCCGGAGCCCCAACATCCGCGTCAAAGCAG___TTTTCAGGGAACCCTACACCGTCCGGGTGGAGGATCAAAGGTCAATGCGTGGCAACGTGGCCGTCTTCAAGTGCCTCATCCCCTCTTCAGTGCAGGAATATGTTAGCGTTGTATCTTGGGAGAAAGACACAGTCTCCATCATCCCAG|GCGGCAGCCCCAAGGGGGACGTGG	in-frame	GKIRSPNIRVKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSIIP|gGSPKGDV	.
TALL063	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	15	116	0	195	198	high	.	.	duplicates(2),low_entropy(1),mismatches(15)	GTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCA	.	.	.
TALL063	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	52	29	5	148	126	high	.	.	duplicates(1),low_entropy(8),mismatches(7)	CACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCA	out-of-frame	HKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL063	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	18	22	0	67	72	high	.	.	duplicates(1),mismatches(6)	CCTCGGATCCTTGATCCTGGAGCGCCGGTGGCGCCCGCAGTTCTCCAAGAAGACTTGGGATTGGTCGAGCGCGGAACCAGTGCGGGGCGCTGATTGGTtGGCACACCAATACGTAACGGCGACC...CCTTCAGTTTCGCGAGCTTGTGTTTGCCGCCTCAGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGGCCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGCGGAGCCCC...___CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAG	.	.	.
TALL063	STIL	TAL1	-/-	-/-	1:47314036	1:47224098	splice-site	splice-site	deletion/read-through	upstream	downstream	2	1	0	67	102	low	.	.	duplicates(1),mismatches(3)	CCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|CGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCAACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAGCAGAATGTGAACGGGGCCTTTGCCGAGCTCCG	.	.	.
TALL063	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	6	10	0	27	51	high	.	.	low_entropy(1),mismatches(5)	CCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...ATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGC	.	.	.
TALL063	AXIN1	Z97634.3	-/-	+/-	16:309973	16:387150	splice-site	exon	duplication/5'-5'	upstream	downstream	2	3	3	241	35	high	.	.	.	CCCCAGCCACCAGTGCCAACGACAGCGAGCAGCAGAGCCTGTCCAGCGATGCAGACACCCTGTCCCTCACGGACAGCAGCGT___GGATGGGATCCCCCCATACAGGATCCGTAAGCAGCACCGCAGGGAGATGCAGGAGAGCGTGCAGGTCAATGGGCGGGTGCCCCTACCTCACATTCCC|GCGGAATCAGGGTGGTGACCTCGGCCACATCACCGTCATAGAGCTTCTTCACAGCCTGTTTGATCTGGTGCTTGTTGGCTTTAACATCCACAGTGAACAAAAGCGTGTTGTTTTCTTCTGTCCTCTTCACGGCCGACTCCGTGGTCAGCGGAAACTTGATGACAGCATAGTGGCCAAGCTTGTTTCTCC	out-of-frame	PATSANDSEQQSLSSDADTLSLTDSSVDGIPPYRIRKQHRREMQESVQVNGRVPLPHIP|aesgw*	.
TALL063	FIP1L1	PDGFRA	+/+	+/+	4:53428183	4:54274925	splice-site	CDS	deletion	downstream	upstream	2	2	2	345	41	high	.	.	.	CGGGCAAATGAGAACAGCAACATACAG___GTCCTTTCTGAAAGATCTGCTACTGAAGTAGACAACAATTTTAGCAAACCACCTCCGTTTTTCCCTCCAGGAGCTCCTCCCACTCACCTTCCACCTCCTCCATTTCTTCCACCTCCTCCGACTGTCAGCACTGCTCCACCTCTGATTCCACCACCGG|CTGCCTTATGACTCAAGATGGGAGTTTCCAAGAGATGGACTAGTGCTTG___GTCGGGTCTTGGGGTCTGGAGCaTTTGGGAAGGTGGTTGAAGGAACAGCCTATGGATTAAGCCGGTCCCAACCTGTCATGAAAGTTGCAGTGAAGATGCTAAAAC___CCACGGCCAGATCCAGTGAAAAACAAGCTCTCATGTCTGAACTGAAGATAATGAC	out-of-frame	RANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPP|aal*	.
TALL063	AXIN1	TMEM8A	-/-	-/-	16:309973	16:387750	splice-site	intron	duplication	upstream	downstream	0	3	3	241	16	high	.	.	mismappers(2)	TGCAGACACCCTGTCCCTCACGGACAGCAGCGT___GGATGGGATCCCCCCATACAGGATCCGTAAGCAGCACCGCAGGGAGATGCAGGAGAGCGTGCAGGTCAATGGGCGGGTGCCCCTACCTCACATTCCC|ACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGATGTGATCTTGGCTCACTGCAACCTCCACCTCTCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAG___GCGGAATCAGGGTGGTGACCTCGGCCACATCACCGTCATAGAGCTTCTTCACAGCCTGTTTGATCTGGTGCTTGTTGGCTTTAACATCCACAGTGAACAAAAGCGTGTTGTTTTCTTCTGTCCTCTTCACGGCCGACTCCGTGGTCAGCGGAAACTTGATGACAG...CCCTCTCCG___AGGTGGGGCTGGTGTCCGAGCACTTCTCaCAGGCCCCGCAGAGGCTGTCCTTCTACAGCTGGTAtGGCAGTGCCAGGCTCTTCCGCTTCCGCGTGCCCCCAGATGCTGTGCTTCTA	out-of-frame	ADTLSLTDSSVDGIPPYRIRKQHRREMQESVQVNGRVPLPHIP|tescsvtqagvq*	.
TALL063	ZP1	DICER1	+/+	-/-	11:60875248	14:95087229	splice-site	3'UTR	translocation	downstream	downstream	0	1	1	14	141	high	.	.	.	CTGCAGCACCTCTGCtTGCCACACCTCAGGGCTGGAGACTTGCTCCACTGCATGTAGCACTGGCACTACAA___GACAGCGACGATCCTCAGGTCACCGTAATGACACTGCCAGGCCCCAGGACATC...CGGGGCCAGTGGGCTTTGAGGATTCTTATGGGCAGGAGCCCACACTTGGGCCCACAG|AAAGATTCTGATACCCTGCCTTGACAACATGAAACTTGAGGCTGCTTTGGTTCATGAATCCAGGTGTTCCCCCGGCAGTCGGCTTCTTCAGTCGCTCCCTGGAGGCAGGTGGGCACTGCAGAGGATCACTGGAATCCAGATCGAGCGCAGTTCATGCACAAGGCCCCGTTGATTTAAAATATTGGATCTTGCTCTGTTAGGGTGcCTAATCCCTTTACACAAGATTGAAGCCACCAAACTGAGACCTTGATACCTTTTTTTAAC	out-of-frame	GPVGFEDSYGQEPTLGPT|erf*	.
TALL063	APLN(65582),XPNPEP2(18455)	XPNPEP2	./+	+/+	X:129720519	X:129749038	intergenic	intron	deletion/read-through	downstream	upstream	8	15	3	73	84	medium	.	.	low_entropy(3),mismappers(2),mismatches(1)	CAGACTTGATCATTTCCCTTTGCTTCGTGATTGTGTTAAGTGACTGCCAAAGGCCTGTTCCTGAATAGTCAGCACATTCCTCAGGACGGTGAGTGGGAGCCCATCTGCTCCTGGAGCGCTTCCTTTCCTTTATTGTGCTATTTTGGCCTCAATTTCCCATTTGGACAGGAGCATCTTCCAGCCGGTGGGGAAAGGGAGAGGGTGGAGAGGGGCGCCACAGCCTTCCTTCATTTCTCACTCATATCCCTGGTTTCT|CTGTACGCACCAGACCATTGAAATTTGGGTTCATTTGGTTTCTCAGAAAGGTATCATATTCCTGAAC___ACTTTTTTGGGGCTCCTTTGCTTCTAGGGAGCACTTGGCAGGAGAAAGTATCTGGCGTCCGAAGCCAGATGCAGAAGCATCAAAAGGTCCCGACTGCCGTCCTTCTGTCGGCGCTTGAGGAG	.	.	.
TALL063	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	3	14	0	21	35	medium	.	.	low_entropy(2),mismatches(2)	CGCACTCCCGAGGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___ATTGGTTTCTGATACTAAATTGGCCTCTAG...___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGC...CAATGGCAAACGTGCATCTGCCAGTGGCCAGCAGCCAGCTGCATCCCGTTACCTGCCTCGTGAGGTGCCTCCACGCTTCCGCCAGCAAGAACAGAAGCAGCTATTAAAGAGAGGCCAGCCATTGC	.	.	.
TALL063	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	7	8	0	47	21	medium	.	.	.	CGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGG...___TGTCTGAGTGCTATGAAGATTG...AAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGA	.	.	.
TALL063	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	1	7	2	39	41	medium	.	.	mismatches(2)	GCGAA?????G?GCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCT___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAAAATTAAAAACACTGGGCATGTGGAA	out-of-frame	A???ALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL063	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:21995048	splice-site	splice-site	deletion/read-through	downstream	upstream	1	5	2	39	67	medium	.	.	mismatches(1)	CATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG___TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATT	out-of-frame	HGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|fgkqakln*	.
TALL063	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	2	3	1	39	98	medium	.	.	mismatches(1)	GCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGgTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGGAGATCTATTTGGAATGTATCTAACTCCAAAGAAACCATCAGAGGTAACAG___TAGAGACGGGG	out-of-frame	VLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDs|vpfdeknkphsdstaeikektsvfwppdicylclkn*	.
TALL063	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	8	2	0	273	54	medium	.	.	mismappers(2),mismatches(1)	GGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGAAACTAGCCTGGCCAACGTGGCAAAAC	.	.	.
TALL063	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21825670	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	3	2	1	21	19	medium	.	.	low_entropy(1),mismappers(6)	CGGCCCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|AGACAAGGTCTCACTATGTTGCCCAAGCTGGTCTCAAACTTCTGGGCTCAAGCAATCCTCTTGCTTCAACCTCTCAAAGTGCTAGGATTACAGGCGTGAACCACTGTGCCAGGCCACAATGGCCATTATCAAAATGACAAAACAAAGTAAGTGTTGATGAGGATGTGACAAAAACAGAACCCTTGTATACTG	out-of-frame	MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|etrshyvaqaglkllgssnplastsqsaritgvnhcarpqwplsk*	.
TALL063	MIR4435-1HG	AC083899.3	-/-	+/+	2:111344061	2:87125198	splice-site	5'UTR	inversion	upstream	upstream	0	2	0	93	15	medium	.	.	.	CTTGCAAGAAACCTCAGGACTTGAGTAACAGCAACATG|TTTGACTTTGAAGGATCACTTTCCCCTGTCATTGCGCCCAAAAAAGCAAGGCCTTCTGAGACTGGATCTGATGAT___GACTGGGAATAT...___AGTATTGCACTGT...CCCCCAGAAGTTGCAAGCAGAACA	.	.	.
TALL063	MYB	MYB(16883),MIR548A2(3104)	+/+	./+	6:135196000	6:135236056	splice-site	intergenic	deletion/read-through	downstream	upstream	4	4	0	901	253	low	.	.	mismatches(1)	TGCGGCACCTCATGACCATATTGGCTACACCCATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTTGACCCTGTGAGACCCTAAGGACCCAGCCCTCTCCTAGCCTGTGGACCACATCCCTGTGAGCTCATAAAGGAGGGTTGTTTTAAGTGGCTAAGTCTGTGG	out-of-frame	rhlmtilatpivfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|satgsefcqqpeggrklilllkdvqisapssiclhfdpvrp*	.
TALL063	MPLKIP	CDK13	-/-	+/-	7:40134229	7:40094527	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	3	2	0	417	175	low	.	.	mismappers(1)	CCCCGGTCTAGGCCGTACGGGAGCAGTCACTCTCCGCGACACGGCGGCAGCTTCCCGGGGGGCCGGTTCGGGTCTCCGTCCCCTGGCGGCTACCCTGGCTCCTACTCCAGGTCCCCCGCGGGGTCCCAGCAGCAATTCGGCTACTCCCCAGGGCAGCAGCAGACCCACCCCCAG|TGGTGGAGCAGAACTGCTTCCTAGACCATCATTGCTAACATAAGGAGCAGAAGAGAAAGAAGAGGATCCAAAGTTGTCCTTGTAGTCTGAAGTGGACAC___GTATACTGGATTAAATGTGCTGTGAAA	out-of-frame	PRSRPYGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQ|wwsrtas*	.
TALL063	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	195	587	low	.	.	duplicates(1),low_entropy(2)	GAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL063	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	13	587	low	.	.	read_through(5)	ATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCC...GCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTA	out-of-frame	LTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL063	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	0	0	37	3	low	.	.	mismappers(1)	GGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAGGCAAGAAAATTC...___GC...GCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GAAAACAAACAACCTGATTTTAAAATGGCCAAAGGACCTGAACAGACATTTCCCTAAAGAAGATGTGAAGATGGC	out-of-frame	GGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL063	SNAI3-AS1(6478),RNF166(2831)	CTU2	./+	+/+	16:88693664	16:88707136	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	11	87	low	.	.	.	CTGGGAGGCCCCTTATTGGAGGGAGCCCCCcCCCCCTCCCCACCCCC...GCAGTTCTGGAAAGGCCTGGGCTGAGTCTCGCGAACCACACCCTGCTGCCGCCGCCTTGGAGTACCCAAAATGCTGGTCGTGGCTCCTGAGATCCAG|CCGTGAGCAGAAGTGTGTGAAGTGCAAGGAAGCGCAGCCCGTTGTGGTGATACGAGCCGGAGATGCCTTCTGCAG___GGACTGTTTC	.	.	.
TALL063	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	2	0	30	7	low	.	.	.	GGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAA...AGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTG	out-of-frame	IAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL063	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	0	1	8	6	low	.	.	low_entropy(1)	CCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTG?TTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAG	.	.	.
TALL063	RP11-1023L17.1	C1QTNF3	-/-	-/-	5:34175462	5:34043043	exon	CDS	deletion/read-through	upstream	downstream	0	0	2	44	0	low	.	.	mismappers(1)	GTTGGAGAGCTCATCTGGAATTTTGCCGATTTCATGACTAACCAGT___CCAAGGATGAAGGAAACACTGGACCTCATTATGGATTTACTTTTGGGATACACTCATCATTCCAGAGGAGGGTAAA...|...AG___TCTCCACAAACCGGAGGACTACCCCCAGACTGCAGTAAGTGTTGTCATGGAGACTACAGCTTTCGAGGCTACCAAGGCCCCCCTGGGC	.	.	.
TALL063	IL1R2(15728),IL1R1(20272)	IL1R1	./+	+/+	2:102044272	2:102093717	intergenic	intron	deletion/read-through	downstream	upstream	1	0	1	3	0	low	.	.	.	CTTCCAGCTGTCCTTGCCAAGGTGCCAGATGTATGAGAGCCCCTCCAGACCAGACCATCTTTTAGTCCAGTGCCACCAAGTCAACTCTGTTGATGCCACATGGAACAGACGAACCACTCAGCTGTGCCCTGTCCAAATTCCTGACCTAAAAAATTCTGAG|AGTTCTTTACATATTCTGGATGCAAGTCCAGTGGTGTCAG	.	.	.
TALL063	FASTKD2	AC008269.2(13496),CPO(57769)	+/+	./+	2:206791685	2:206881785	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	2	13	4	low	.	.	.	AGTAGCTGTGCTATGTGTTTCCAGATCTGCTTATTGTTTGGGTTCAAGCCACCCCAGAGGATTCCTTGCTATGAAAATGCGGCATTTGAATGCAATGGGTTTTCATGTGATCTTG___GTC...|...CATGTCGGGTCTGTTGGTGGAGATGCCAAACACGGAAGACAGTGAAGTGGTGGCTCAGCGTTCTCCAAAGGAATGAGCAAGCAGATGAGGCAAAGCACACTCTGAAG___AGTGACAACTATAGCTTC	.	.	.
TALL063	AC104820.2	ITGA4	+/+	+/+	2:181362849	2:181457528	exon	5'UTR	deletion/read-through	downstream	upstream	0	0	2	75	330	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	GATAAGAGGGACCACTGTAAATAAGTGACATGAATGATACTGCAAAGGACCATAGCCTAACCAGCCAAGCAAACTGGAAGTACCTTTAGACTCACGCTTTGCCAAGCTCAGTTCCAGAATCAC...|...AGCCCGCTGGCGCCGGACACGCTGCGCCTCATCTCTTGGGGCGTTCTTCCCCGTTGGCCAACCGTCGCATCCCGTGCAACTTTGGGGTAGTGGCCGTTTAGTGTTGAATGTTCC	.	.	.
TALL063	PFKFB3	RP11-563J2.2	+/+	+/+	10:6232895	10:6326557	CDS	exon	deletion/read-through	downstream	upstream	0	0	2	2	2	low	.	.	mismappers(1)	CCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA___A...|...CCAGTAAGGAGCTCCACCGTGACTCTCCTCCCTGCTCCGTTGCCCCGACGAGGAAGTGTGAAAACGTTTCTGGCTCCATCCAAGAG___GTAACTTCAGTACGCCAGCACGGTTGAGAACTATTGTTCAACGCGAACTTCACATATGAAG	.	.	.
TALL063	C17orf85	C17orf85	-/-	-/-	17:3823511	17:3826120	intron	CDS	duplication	upstream	downstream	0	2	0	7	213	low	.	.	.	CGTAAATAGCCTtTTGCTCATCAGAGCTTCATGCC|AGTGAGGACAAGTCAGCTGAGAAAAGGAAAAAAG___ACAAGCAGGAAGACAGTTCAGATGATGATGAAGCTGAAGAAGGAGAGGTTGAAGATGAGAACTCAAGTGATGTAGAG___TTGGATACGTTGTCTCAGGTAGAAGAGGAGTCTTTGTTAAGAAACGATCT	.	.	.
TALL063	TRAIP	ACAD10	-/-	+/+	3:49841113	12:111753814	intron	CDS	translocation	upstream	upstream	0	2	0	6	130	low	.	.	.	CTTTGTGTTAGATTAGTGCTGTGGCTCAGTCTGACCTGCAG|GGCACAGTGCTGGCGGACATCGCGCAGTCGCGCGTGGAGATTGAGCAGGCACGGCTGCTGGTGCTGAGAGCTGCCCACCTCATGG...CAG___CAGGCCTGAGCAGCGACTACCCACTGGCTCAGTTCTTCACCTGGGCCCGAGCCCTGCGCTTTGCCGACGGCCCTGACGAGGTGCACCGGGCCACGGTGGCCAAGCTAGAGCTGAAGCACCGC	.	.	.
TALL063	IGF2R	TCP1	+/+	-/-	6:160062619	6:159784067	splice-site	splice-site	inversion	downstream	downstream	1	0	1	86	2173	low	.	.	.	CTGGAATCTGGGTGTGGTGCAGATGAGTCCCCAAGCCGCGGCGAATGGATCTTTGAGCATCATGTATGTCAACGGTGACAAGTGTGGGAACCAGCGCTTCTCCACCAGGATCACGTTTGAGTGTGCTCAGATATCG___GGCTCACCAGCATTTCAGCTTCAGGATGGTTGTGAGTACGTGTTTATCTGGAGAACTGTGGAAGCCTGTCCCGTTGTCAGAGTGGAAG|GCATGCCCAAGAGAATCGTAAATGCAAAAATTGCTTGCCTTGACTTCAGCCTGCAAAAAAC...AGACCCTGAAAAACTGGACCAAATTAGACAGAG___AGAATCAGATATCACCAAGGAGAGAATTCAGAAGATCCTGGCAACTGGTGCCAATGTTATTCTAACCACTGGTGGAATTGATGATATGTG	in-frame	WNLGVVQMSPQAAANGSLSIMYVNGDKCGNQRFSTRITFECAQISGSPAFQLQDGCEYVFIWRTVEACPVVRVE|gMPKRIVNAKIACLDFSLQK	.
TALL063	SRSF7	STMN1	-/-	-/-	2:38751229	1:25904738	splice-site	splice-site	translocation	upstream	downstream	0	2	0	1876	8293	low	.	.	.	CTTGCTAAAGAGCCGAGCACGCGGGTCTGTCATCATGTCGCGTTACGGGCGGTACGGAGGAG|GACTTTCCTTATCCCAGTTGATTGTGCAGAATACACTGCCTGTCGCTTGTCTTCTATTCACCATGGCTTCTTCTG___ATATCCAGGTGAAAGAACTGGAGAAGCGTGCCTCAGGCCAGGCTTTTGAGCTGATTCTCAGCCCTCGGTCAAAAGAATCTGTTCCAG	in-frame	MSRYGRYGG|glslsqlivqntlpvacllftMASSDIQVKELEKRASGQAFELILSPRSKESVP	.
TALL063	MYH9	PIDD1	-/-	-/-	22:36387807	11:804463	splice-site	splice-site	translocation	upstream	downstream	2	0	0	726	95	low	.	.	.	GCCtAGCTGGGTGCGGTGAGGCGCGCAGATCACCGCGGTTCCTGGGCAGGGCACGGAAGGCTAAGCAAGGCTGACCTGCTGCAGCTCCCGCCTCGTGCGCTCGCCCCACCCGGCCGCCGCCCGAGCGCTCGAGAAAGTCCTCTCGGGAGAAGCAGCGCCTGTTCCCGGGGCAGATCCAGGTTCAG|CTTCCCCGGGCGCTGCCTGGACAGGCCTGCCTGCGTGCTGGGACATGTCTGGCCTCCAAGGACCGTCGGTGGGCGAT	.	.	.
TALL063	CCL3	CCL18	-/-	+/+	17:36089183	17:36070951	splice-site	splice-site	inversion	upstream	upstream	2	0	0	124	0	low	.	.	.	CAGGACAGGGACCCACAGAACGCACACTCACATGTTCCTGCAG___TTGCTGCTGACACGCCGACCGCCTGCTGCTTCAGCTACACCTCCCGGCAGATTCCACAGAATTTCATAGCTGACTACTTTGAGACGAGCAGCCAGTGCTCCAAGCCCaGTGTCAT|CCTCCTAACCAAGAGAGGCCGGCA	out-of-frame	LLLTRRPPAASATPPGRFHRIS*LTTLRRAASAPSPVS|ss*	.
TALL063	ANKRD28	CDKAL1	-/-	+/+	3:15795223	6:20781145	splice-site	splice-site	translocation	upstream	upstream	1	0	0	98	89	low	.	.	.	CTAAATTGCCACAGGAAAATAAATCCCTACATTCTCCACCTTCTGGAAATGTATTG___CCATCACTGGTGCAAGCTATATTTAACGGAGATCCTGATGAAGTTCGAGCACTAATATTTAAGAAAGAAGATGTTAACTTTCAG|GTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGG	out-of-frame	klpqenkslhsppsgnvlPSLVQAIFNGDPDEVRALIFKKEDVNFQ|vtl*	.
TALL063	ANKRD28	CDKAL1	-/-	+/+	3:15859377	6:20955419	splice-site	splice-site	translocation	upstream	upstream	0	1	0	25	89	low	.	.	.	GGCCGGTCGGCGGCGGCAGCGGCAGCGGCGGAGGAGGAGGAGGCTGGAGTGGGCGCGGAGGCGACCGCCATGGCGTTCCTCAAACTCCGTGACCAG|AGGGTGTTTGTGAGATATGGTTGACC...CCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAG___GAAATGGCAAAAATCCTTAATCACCCCAG	out-of-frame	MAFLKLRDQ|rvfvryg*	.
TALL063	FAF1	USP1	-/-	+/+	1:50655442	1:62447341	splice-site	splice-site	inversion	upstream	upstream	0	1	0	381	495	low	.	.	.	CTTACAAGTATCCCCGTTCGCCACCAATTATGGGAGGGCTGGCCAACTTCTGCTACAGACGACTCA|GTGAAGAACAAATTGGTTTTGAGCTAGTGGAGAAATTATTTCAAGGTCAGCTGGTATTAAGGACGCGTTGCTTGGAATGTGAAAGTTTAACAGAAAGAAGAGAAGATTTTCAAGACATCAGTGTG	out-of-frame	LTSIPVRHQLWEGWPTSATDDS|vknklvls*	.
TALL063	FAF1	USP1	-/-	+/+	1:50596121	1:62447341	splice-site	splice-site	inversion	upstream	upstream	1	0	0	392	495	low	.	.	.	GCTACAGACGACTCA___ATGTGTCTTGCTGAATCAGGGCTCTCTTATCCCTGCCATCGACTTACAGTGGGAAGAAGATCTTCACCTGCACAGACCCGGGAACAGTCGGAAGAA|GTGAAGAACAAATTGGTTTTGAGCTAGTGGAGAAATTATTTCAAGGTCA	out-of-frame	ATDDSMCLAESGLSYPCHRLTVGRRSSPAQTREQSEE|vknklvls*	.
TALL063	MALAT1	S100PBP	+/+	+/+	11:65504595	1:32826098	splice-site	splice-site	translocation	downstream	upstream	1	0	0	495	129	low	.	.	.	GCATTTCATCCTTCATGAAGCCATTCAGGATTTTGAATTGCATATGAGTGCTTGGCTCTTCCTTCTGTTCTA___TAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTGTGAAACG...GCAGTTTTAAGCAGTCGTATTTGTGATTGAAGCTGAGTACATTTTGCTGGTGTATTTTTAG|AAATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACCTCTCTCTTGCCTAAAGACG	.	.	.
TALL063	RAB18	APBB1IP	+/+	+/+	10:27509930	10:26566961	splice-site	splice-site	duplication	downstream	upstream	1	0	0	287	558	low	.	.	.	GAACGGGGTCAGGATGGACGAGGACGTGCTAACCACCCTGAAGATCCTCATCATCGGCGAGAGTGGGGTGGGCAAGTCCAG___CCTGCTCTTGAGGTTCACAGATGATACGTTTGATCCAGAACTTGCAGCAACAATAG|GATAAGAAtCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCCCGGGCCCCGC	out-of-frame	MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI|g*	.
TALL063	PDS5A	RHOH	-/-	+/+	4:39976440	4:40242714	splice-site	splice-site	inversion	upstream	upstream	1	0	0	197	2219	low	.	.	.	CTGTGAACCAAAAGTTGTCCCCCAGGATGGACTTCACCGCGCAGCCCAAGCCTGCCACTGCCCTCTGTGGCGTCGTGAGTGCCGACGGGAAGATCGCTTACCCTCCGGGGGTAAAAGAGATCACCGACAAGATCACCACGGACGAGATGATCAAACGCCTGAAG|TTTCCAACATGGCTAGATCCATCAGAAACTGAAGCCGTGGAGAACGC	out-of-frame	MDFTAQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRLK|fptwldpseteaven	.
TALL064	RUNX1	AFF3	-/-	-/-	21:34799301	2:99727128	splice-site	splice-site	translocation	upstream	downstream	12	13	38	500	124	high	.	.	duplicates(2)	GTCTTCACAAACCCACCGCAAGTCGCCACCTACCACAGAGCCATCAAAATCACAGTGGATGGGCCCCGAGAACCTCGAA___GACATCGGCAGAAACTAGATGATCAGACCAAGCCCGGGAGC?TGTC...___...CT...___...CGGCGCACAGCCATGAGGGTCAGCCCACACCACCCAGCCCCCACGCCCAACCCTCGTGCCTCCCTGAACCACTCCACTGCCTTTAACCCTCAGCCTCAGAGTCAGATGCAGG___ATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAA|AGAAAGGTGATGCAGAGCCAGAGAGTCCAGACAATGGCACATCGAATACATC___AATGCTGGAAGATGACCTTAAGCTAAGCAGTGATGAAGAGGAGAATGAACAG___CAGGCAGCTCAGAGAACGGCTCTCCGCGCTCTCTCTGACAG___CGCCGTGGTCCAGCAGCCCAACTGCAGAACCTCGGTGCCTTCCAGCAAGGGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCTCCTCCAGCGACTCAGAGAGCAGCTCCGGATCTGACTCGGAGACCGAGAGCAGCTCCAGCGAGAGTGAGGGCAGCAAG	in-frame	RRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLS|kKGDAEPESPDNGTSNTSMLEDDLKLSSDEEENEQQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSETESSSSESEGS	.
TALL064	RUNX1	AFF3	-/-	-/-	21:34799301	2:99672589	splice-site	splice-site	translocation	upstream	downstream	5	0	19	500	136	high	.	.	.	CGGCGCACAGCCATGAGGGTCAGCCCACACCACCCAGCCCCCACGCCCAACCCTCGTGCCTCCCTGAACCACTCCACTGCCTTTAACCCTCAGCCTCAGAGTCAGATGCAGG___ATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAA|AATGCTGGAAGATGACCTTAAGCTAAGCAGTGATGAAGAGGAGAATGAACAG___CAGGCAGCTCAGAGAACGGCTCTCCGCGCTCTCTCTGACAG___CGCCGTGGTCCAGCAGCCCAACTGCAGAACCTCGGTGCCTTCCAGCAAGGGCAGCAGCAGCA...___GCTGAACCGGCATCCTCTAACAAGTGGCAGCTGGATAAATGGCTAAACAAAGTTAATCCCCACAAGCCTCCTATTCTGATCCAA	out-of-frame	RRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLS|kcwkmtls*	.
TALL064	AFF3	RUNX1	-/-	-/-	2:99752221	21:34792610	splice-site	splice-site	translocation	upstream	downstream	1	1	2	20	267	high	.	.	.	CAGAAACCGACCGCGTATGTGAGGCCAATGGACGGCCAAGATCAGGCCCCTGATGAGTCTCCTAAGCTGAAGTCGTCTTCGGAAACCAGCGTGCACTGCACATCATACAGGGGAGTCCCTGCC...GGAGAAACCAACAGCTGTGTTGAAGAAATAATCCGG___GAGATGACCTGGCTTCCACCACTTTCTGCTATTCAAGCACCTGGCAAAGTGGAACCAACCAAATTTCCATTTCCAAATAAG|CGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCG...CGCCGGTCACCTCGGGCATCGGCATCGGCATGTCGGCCATGGGCTCGGCCACGCGCTACCACACCTACCTGCCGCCGCCCTACCCCGGCTCGTCGCAAGCGCAGGGAGGCCCGTTCCAAGCCAGCTCGCCCTCCTACCACCTGTACTACGGCGCCTCG	out-of-frame	GETNSCVEEIIREMTWLPPLSAIQAPGKVEPTKFPFPNK|rhpt*	.
TALL064	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	3	51	2	136	86	high	.	.	duplicates(2),low_entropy(4),mismatches(4)	GGAAGTTCAAACTGTGCAAACCCTGACTGTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAG	.	.	.
TALL064	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	18	14	5	91	186	high	.	.	duplicates(5),low_entropy(3),mismatches(6)	TTTCCTTTCAAATGAGTAATCCCTGAAGATCTTAACCCCCCAATTTCATCACCCTCACCTCCCCCCTTTATTTTTCTCTCGCTCCTCTTCCCCGCCTGCTTCCCTCCGCCGCGCTCCCCCCTCCTTTTTTTTtTTTGC...GCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGtACCACGTGGTGCCCCCCAG...GGAGCGCGAGCG	.	.	.
TALL064	APOB(57699),TDRD15(22145)	AC067959.1	./+	+/+	2:21101772	2:21527507	intergenic	splice-site	deletion	downstream	upstream	1	5	1	34	21	high	.	.	duplicates(1),mismatches(2)	GGCGTGTCCGGAGTTTGTTCCTTCTGATGTTCAGATGTGTCCAGAGTTTCTTCCTTCCGGTGGGTTCGTGGTCTCACTGACTTCAGGAGTGAAGCTGCAGACCTTCGCGG...CTCTTAAAAGCGGCGCGTCTGGAGTTGTTCTTTCCTTCCGGTGGGTTCGTGGTCTCACTGGCCTCAGGAGTGAAGCTGCAGACCTTCATG|AAACAAAGCTCCAAATTTGGAAGCAGCAGTGAAACTCCACAG___ATTACTGAGGGCAAAATTGCTGGGTCATATG___GCACACTGGAT...CAcAGGCACCAAGGAAAGGTCTTGTGCTGACACAGGGAGAAAGCTGTCATTTACAAGCTGGGAGGAGACCTTCACCAGA...G___GAAGGAGGTGATGAAGAGAGAAAGAAAGGATGGAAGGAAGGAGGAAGTGGACAATGAG___ATCCTGGCTGATGGATGTAATGAAGGCATGAACTATACTAGTTGAACAAGGAA	.	.	.
TALL064	STRN3	PRKD1	-/-	-/+	14:30947090	14:29584869	splice-site	intron	inversion/5'-5'	upstream	upstream	2	1	3	42	15	high	.	.	.	GAAACCAAAGACACAGAGGCTCCCACAGCACCTCAGAATAGCCAGTTAACGTGGAAGCAAGGCAGACAGCTTTTAAGACA___GTATCTTCAGGAAGTAGGTTATACAGATACAATATTAGATGTACGGTCTCAGCGGGTAAGGTCATTACTTGGACTATCTAATTCAGAACCAAATGGATCAGTAGAAACAAAGAATTTAGAACAGATCCTGAATGGAGGTGAATCTCCTAAGCAAAAGGGACAAGAAATAAAAAG|GCGGGAAATCACCTGTGAAACCTCAAGGCTGATCTCTTTTGTCAAGACACAGTACATTTTCCCCCGACTTCTCTCCACCCCAAATTATTCAGGTATCTTTTCAAAATAGAAACCAGATAGAACAATCATTCTGGTGATAGAGCCTTCGCCAATCAACCTTCAAGCTCCTTGCCTTCAG___CTCTCAACCCAGCATGCTGTTGCTCAGCAACACTAACTGGGACGCTCCTCTCAGGGACTGAAACCAGAGGCTGCCG	out-of-frame	ETKDTEAPTAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQRVRSLLGLSNSEPNGSVETKNLEQILNGGESPKQKGQEIKr|reitcetsrlisfvktqyifprllstpnysgifsk*	.
TALL064	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	12	25	7	76	55	medium	.	.	duplicates(4),mismappers(2),mismatches(5)	AGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGGG	.	.	.
TALL064	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	19	1	0	320	86	medium	.	.	mismatches(7)	CCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGAC	.	.	.
TALL064	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	4	6	122	501	medium	.	.	low_entropy(1),mismatches(1)	CGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL064	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	30	501	low	.	.	read_through(12)	CAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACC...GTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAGCTAATAATATAGAACAgAATGCTCAAGAG___AATGAAAATGAAAGCCAAGTTTCAAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL064	LATS2(16512),RPS12P23(16259)	LATS2	./-	-/-	13:21078059	13:21046230	intergenic	splice-site	deletion/read-through	upstream	downstream	2	7	5	153	30	medium	.	.	low_entropy(1),mismatches(2)	CCGCAGAAGAGCGTCCTGGAGAGAAGGTTCCAGAGAAGCCTGGCGCAGGTTCCGGCCTGGCGGAGGCTCCCCGGGGTCTTGGAGCTGCGCGTGGGCATCAcCACCTGGCTGTCTGTGTCTCCAGCCTGGGTCCAAGATGTGTGGGCCGGGCTTGCAGGCAGaGGTCCAGAGAGGCTGTTGGGAGATGACCATTTCCATCTGAAGGGCTTCGTAGTCTCTGAG|AGAGTGATAATCTTCAAAATGAAGACTTTGGAAAATTTTAGGTTCTCTATAGGAACTACAAAAATGGAAGGAAAGAACATTTTCAAAAGGAAATTATTTTGAAAGTATGTTTACAACAAACTGATACTATTGACAGTTTTTTTTTTTAAATAATAAAACACTTTAAGAAGATTGTATTTATGGTAAAAGGAAACTGGACTAACAATGAGGCCAAAGACTTTTCCTGCCACGACTTATTCTGGAAATAGCCGGCAGCGACTGCAAGAGATTCGTGAGGGGTTAAAgCAGCCATCCAAGTCTTCGGTTCAGGGGCTACCCGCAGGACCAAAC	.	.	.
TALL064	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	11	101	140	medium	.	.	duplicates(1),low_entropy(2)	GGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCC	out-of-frame	IRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL064	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	1	1	2	130	15	low	.	.	.	GGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTAT...ATGGAGAACTGGTATCAAAGAATGGATTTTTT[t]CAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTA...TCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTAC	out-of-frame	GELVSKNGFFsgi*ptdldsscss|dgymhpvhphvvrrlayqhnqtvcrnsptvem	.
TALL064	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	2	130	140	low	.	.	low_entropy(1)	TGAAGCTCAGAGAGGTTAATGAAATTGCTTATTGATCCCAATCTAGTAGTGGCAGAGCCAGAACCAAATCTCCTTAAAACTTTTCACTATTTGTGTTTCAGTAGGTCGGAAACAGCAGAAAA...GAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAAC	in-frame	ELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPK	.
TALL064	RP11-460N20.4(2926),RP11-460N20.5(2397)	RP11-479O9.2	./.	+/.	7:65081706	7:65773650	intergenic	exon	deletion	downstream	upstream	3	0	1	9	11	medium	.	.	duplicates(1),low_entropy(1),mismatches(1)	.	.	.	.
TALL064	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	1	1	4	99	medium	.	.	.	CTCTGCACCAAGCCAGGAGATG___GAAGGAAAATACATGTACAGCCAACTTCCTTGAGGGTTCGTTCTTTTGCATCAGGGTGTCTCAAACTGCTGCCCTTAAAACACCTtTAAGAGAATCATCCAGG...GGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGA	.	.	.
TALL064	RP13-297E16.4	AKAP17A	+/+	+/+	X:1755983	X:1593442	exon	splice-site	duplication	downstream	upstream	1	1	1	36	152	medium	.	.	.	CAAGTATCTGTCTCTTTGGGTCTGTCTAACAAGGAGCAAAGCCTGGCCTCCCACCAGCATCCAGACAATAGTGGATTCCCTCTCCATAGATGTCAAAAAAGAAACAGATGCTCCCGCAGGTGAAATGAGCTCTGGTCCACAATGCAACGCAGGCTGTGCAGAAAATCAAAGAGGAACCAACCCAGAAGTATCCCCCAGGACAAATCATTAAGGGGGAAA|AGGCCCAAGGTCCCGGAGGCTATGGCAGCGGCTACCATCGTGCACGACACGTCTGAGGCCGTGGAGCTCTGCCCTGCTTACGGCTTGTACCTGAAGCCCATCACCAAGATGACCATCAGCGTGGCACTCCCGCAGCTGAAGCAGCCGGGGAAGTCCATCTCCAACTGGGAGGTGATGGAGAGGCTGAAGGGCATGGTGCAGAACCACCAGTTCTCC	.	.	.
TALL064	INTS6	KSR1	-/-	+/+	13:51451977	17:27624562	splice-site	3'UTR	translocation	upstream	upstream	0	2	0	95	75	medium	.	.	.	CCTGCCAGCAGAGGAGACAGGTATATGCTGGTCACTTTCGAAGAGCCGCCCTATGCTATCAAGG|CTGGATTTGGAAAAGTCTTTGAAGTGAGAGCACCACGCTTGTCTTCGTTAGAAACTCTTAACTGCAGAAAAAAGTTCCAGATGGCAAGGGAGCCCTTAAGTGGAGATTAGGTTGCATTAGACTCCAAAACCAGAAAGGAAAAAGGGTGATGGGAGTGGAGACGTGATTGGATTCAG	out-of-frame	PASRGDRYMLVTFEEPPYAIK|agfgkvfevraprlssletlncrkkfqmareplsgd*	.
TALL064	SPSB4(4897),PXYLP1(75218)	COPS2	./-	-/-	3:141153508	15:49106320	intergenic	splice-site	translocation	upstream	downstream	0	2	0	0	6	medium	.	.	.	CCAGAAACTGACCATGCTGGCACCCTGATCTTGGACTTCCAGCCTCTAAAAGT|AGAAAGGAGAGGAAGATTTGGACACAGACACACAGAGAAGAGGTCAAAGTGAAGACAGAACCAGAGATTGGAGTTTTGCTGCCATAAGCCAAGAAACCAAGAGCCAAGAAACACCAGAAGGTAGG	.	.	.
TALL064	RP11-180D15.1(59369),AL590222.1(12814)	ATRX	./+	-/-	X:79145217	X:77520916	intergenic	splice-site	inversion	downstream	downstream	0	2	0	165	174	medium	.	.	.	GCCATCACATGAATTCTTTGGAGATCTCTGAAGAAAACAGAAAGAAACTGAAATG|TGGAAGGAGAACATGAATCTCTCAGAGGCCCAAGTACAGGCGTTAGCATTAAGTAGACAAGCCAGCCAGGAGCTTGATGTTAAACGAAGAGAAGCAATCTACAATGATGTATTGACAAAACAACAGATG___TTAATCAGCTGTGT	.	.	.
TALL064	PLCB4	FAH	+/-	+/+	20:9402531	15:80159756	intron	splice-site	translocation/3'-3'	upstream	upstream	0	2	0	7	301	medium	.	.	.	CTGCTTTTCCTGCTTCCACTCCTGTTTCCTCCTAAACTAGTCTCCATATGGCAACCACAGCAATCTTTTAAAACTTcAATCAG|CCTACACTCAACAGCTTCATGGGCCTGGGTCAGGCTGCCTGGAAGGAGGCGAGAGTGTTCTTGCAGAACTTGCTGTCTGTGAGCCAAGCCAGGCTCAGAGATGACACCGAACTTCGGAAGTG___TGCATTCA	.	.	.
TALL064	MVB12A	CTD-2521M24.6	+/.	-/.	19:17413535	19:17989245	intron	intron	duplication/3'-3'	upstream	downstream	0	1	1	45	1	medium	.	.	.	.	.	.	.
TALL064	RB1	SPRYD7	+/+	-/-	13:48381443	13:49921580	splice-site	splice-site	inversion	downstream	downstream	0	2	0	124	35	medium	.	.	.	CATTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCATGGCTCTCA|GGTATTACTTATGACCATGTCGAATTAAATGTATACTTGAATGGAAAAAACATGCATTGTCCAGCATCAGGTATACGAGGGACAGTGTATCCAGTTGTTTATG___TTGATGACAGTGCAATTTTGGATTGCCAGTTCAGTGAGTTTTAT	in-frame	HLERCEHRIMESLAWLS|GITYDHVELNVYLNGKNMHCPASGIRGTVYPVVYVDDSAILDCQFSEF	.
TALL064	RP11-764K9.1	LINC01410(4942),RP11-262H14.5(19320)	-/-	./-	9:63809294	9:62818428	intron	intergenic	deletion	upstream	downstream	0	0	12	4	73	low	.	.	duplicates(1),mismappers(1),mismatches(5)	TTTGCAAGTATTTTGTTGTGGATcATTGAATGGATGTTCATCAAGGATACTGGCCTGAAGTTTTCTTTTTTTGTTtTGTCACTGCCAGGCTTTGGTATCAGGATGATTaTtGC...|...CCTTTGCAGGGACATGCAGGAAGCTGGAAACCATCATTCTCAGCAAACTATC?CAAAGACAAAAAACCAAACACCCGCATGTTCTCACTTATAGGTGGGAATTGAACAATGAGAACACGTGGACACAGGAAGGGGAACATCACACACCAGGG	.	.	.
TALL064	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	4	3	1	414	30	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	GCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATGGGCCACCATGTGCCAGCA...AATGTCATTTTCTGTCATCAAGAAGATTCTAATTGGCCTTTAAGTGAAGGAAAGGCTTTGAAGCAAAAGTTTGATGAGATTTTTTCAGCAACAAG___GTACGTCAGACACAAGGTCAGAAAGTAAAA	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL064	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	1	3	23	12	low	.	.	mismatches(1)	CCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACAC	.	.	.
TALL064	GIMAP6(16243),RP11-632K21.6(27942)	GIMAP1	./+	+/+	7:150648891	7:150720046	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	1	20	408	low	.	.	mismatches(1)	TCAtCCTTCAACTTCCCCTCAcTCAGTGAGGATTAGACTGTGCTTTCTGGATGTcGCTGTCACAGTTCAGCAGATGCTGAGATAAAGTTGTGCAGGCATGAAATTCATTTAGGAGTATTTTTGGGAAGAGC|AGGTTTAGAAGAGAACGCTCAGTCCCGGCAGGAGTCCACGCGGAGGCTCATCCTTGTTGGGAGAACAGGGGCCGGGAAGAGCGCCACTGGGAACAGCATCCTGGGCCAGAGACGGTTCTTCTCCAGGCTGGGGGCCACGTCTGTGACCAGGGCCTGCACCACGGGCAGCCGCAGGTGGGACAAGTGCCACGTGGAAGTCGTGGACACTCCGGACATTTTCAGCTCCCAAGTGTCCAAGACAGATCCTGGCTGTGAGGAGAGAGG	.	.	.
TALL064	FAM157B	FO082796.1	+/+	+/+	9:138251596	9:138294343	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	23	5	low	.	.	duplicates(1),low_entropy(2),mismatches(1)	CCAGGCTCAG___GTCTGAAGGCCAGAATTCTACA___...CTGAGTCAAGGTGGGAGCAGGGTCGGTAGCTTCCGAGGCTCTG?GGGAGAATCCGTTTCCTGGCCGTAGAGGTGGCCTGCACTCCGCAGCTTGTGCTGCCCGTCTCGAATGACTGGAGTTTCCTGCTTCTGTCACTACACCTCCCACCCTCTCCATCACCTGCTCTGCTCTTACAAGG...___AGAAATGGAATCATCGTATCGCTGATCTACGTAAACAAACTGAAGAATTGTCTGAAAGAAAATATG___ACATGAACTTATGAATTCAACAGGTGAAGATTTACAACTTGATAAATCAACTTTGTCAG|CTGATCCATATGAATTCCTCTTATTAAGAAAAAT...AAGGTATGGATAAGGCCCTGAGTCATCTTCCTGAGCTGAATGATAGTTAAGCTGAATGTACGTATAAAATATGATTTTCTAACCACTTGCTCGCCAACAAGGAAAACTTTTAAGTAGAGCAGAA	.	.	.
TALL064	GIMAP6(16243),RP11-632K21.6(27942)	GIMAP1-GIMAP5	./+	+/+	7:150648891	7:150720046	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	0	20	408	low	.	.	mismatches(1)	TCAtCCTTCAACTTCCCCTCAcTCAGTGAGGATTAGACTGTGCTTTCTGGATGTcGCTGTCACAGTTCAGCAGATGCTGAGATAAAGTTGTGCAGGCATGAAATTCATTTAGGAGTATTTTTGGGAAGAGC|AGGTTTAGAAGAGAACGCTCAGTCCCGGCAGGAGTCCACGCGGAGGCTCATCCTTGTTGGGAGAACAGGGGCCGGGAAGAGCGCCACTGGGAACAGCATCCTGGGCCAGAGACGGTTCTTCTCCAGGCTGGGGGCCACGTCTGTGACCAGGGCCTGCACCACGGGCAGCCGCAGGTGGGACAAGTGCCACGTGGAAGTCGTGGACACTCCGGACATTTTCAGCTCCCAAGTGTCCAAGACAGATCCTGGCTGTGAGGAGAGAGG	.	.	.
TALL064	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	1	2	1	3	2	low	.	.	.	ACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAA...TTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCTCTCTTCTTATGGCTCTGGACACACTGCTGAAC	out-of-frame	CMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqe	.
TALL064	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	2	0	119	6	low	.	.	mismappers(2)	GGAACAAGGGGCCGAGGCCACGCTGCCTGCATCTCGTGCTGGGGACCTGCATGCGCCAGCACCAGGGCTTGGACTGGATCTTACTCAGTCCATGGTGCCCAGCCTCTGCCCCAACATGCCCTCTGCATGTGACCGTCATGCCCTGGATGGAGCCACTCCTGGCTCACCCCACCTGCACTGCACTGTCCCCAGAGAGCCACCCCTCCACCCACTCAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAACTGCAGCATATAGTATCATGAGCTAATAAAC	.	.	.
TALL064	TMSB15B	TMSB15B(11298),H2BFWT(33137)	+/+	./+	X:103962592	X:103978010	5'UTR	intergenic	deletion/read-through	downstream	upstream	0	0	3	6	69	low	.	.	.	GGGAGGGCGAGGTCTGCTCTGAAGTCACCAAGCTCCTGATCTTAGAAGAGATGGTGGGCGCAGGCTCTGGAGGCTCAAGCGGAGGAGGGGAAGGAGGCGAGTCCGGAAACCCTCGGCCAATC...|...AGAATATTAGAAAAATATTATGAAAATAGTTGAAGAGAAATGTTATGAAAATAGTTG------------------AAGGAGACCAAGAAAAACTCCCACAAAATCAGCTGCAAGTAAATCCCTCTGGATGGTGCCGC	.	.	.
TALL064	LHFPL1	HMGB3P30(25785),AMOT(58198)	-/.	./.	X:112671842	X:112716305	intron	intergenic	deletion/read-through	downstream	upstream	0	1	2	1	15	low	.	.	.	.	.	.	.
TALL064	EEF1A1P13	DNAH5	-/-	-/-	5:14652238	5:13887988	exon	intron	deletion	upstream	downstream	0	0	3	31	1	low	.	.	mismatches(2)	GTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGATTGC...|...ACACAGGGATTTGAAG	.	.	.
TALL064	LL0XNC01-116E7.2	RAB9B	-/-	-/-	X:103918417	X:103832060	exon	5'UTR	deletion/read-through	upstream	downstream	0	0	3	19	0	low	.	.	.	GCGAGGCAGGGGATGGAGCACTCCCATGGCCTGGTTGCGCTGAGAAAGGAGTTGTGGCTCATCTGGATGCTGCCGACTGG___GTCATCAAAGCCGAATCCGAATTTGAATTCTGTGCGGCTGATTG...|...G___CACCCTAAAAAGAAAGAATAAAACAACAACAGGAAAAAAAGGAAAATATTTAAATTGTGACAAAAACCCACTGG___GTTCTCTTGGTTACAAACTCCTTCCCTTCTGG	.	.	.
TALL064	LATS2(18631),RPS12P23(14140)	SAP18	./+	+/+	13:21080178	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	0	2	1	18	1222	low	.	.	.	CAGTTCGAGGGGCTCAGCCCTGAAAATTCCCTGGCAGTGCTGGACGTTAATCTGCAATGAAGTCATCACAT|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAAT...ACACTTG___GATGGATGCAACtTTGAAAGAACTGACAAGCTTAGTAAAAGAAGTCTACCCAGAAGCTAGAAAGAAGGGCACTCACTTCAATTTTGCAATCGTTTTTACAGATGTTAAAAGACCTGGC	.	.	.
TALL064	HPGDS	SMARCAD1	-/-	+/-	4:94302146	4:94288190	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	1	1	1043	56	low	.	.	.	AAAATCCCCATTTTGGAAGTTGATGGACTTACTCTTCACCAGAGCCTAGCAATAGCAAGATATTTGACCAAAAACACAG___ATTTGGCTGGAAACACAGAAATGGAACAATGTCATGTTGATGCT...ATGCAAGACTTGGACACATATTTAGGGGGGAGAGAATGGCTTATTGGTAACTCT|ATGCTACAATGGTATTGTACCAACTTTGAGGAATATGCTGTGATATTGAAAATAAATTGCCATGTTTACAATTGACTTTATTATGGATCAATGGGAAAAAAGAAGTAGAAAAAACAAACACTGCAAATGTCACAACTGTTAAATCGCTGTATTTTTCATTCATACTATACTTTCAACAATTAAAAAAAaATATATATATTTTAATAGAGATGGAG	out-of-frame	MQDLDTYLGGREWLIGNS|mlqwyctnfeeyavilkinchvyn*	.
TALL064	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853395	18:48093388	exon	intron	deletion/read-through	downstream	upstream	0	0	3	79	0	low	.	.	low_entropy(2),mismappers(1),mismatches(10)	...CCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGGGTATA|...GCATCTGAGG	.	.	.
TALL064	JRK	MEAF6(5125),SNIP1(14550)	-/-	./+	8:142657883	1:37519899	3'UTR	intergenic	translocation	upstream	upstream	0	0	2	59	13	low	.	.	.	CCTCATGGCCAGGGCCTGGAGGATTCCCACCATACCCTACCCAGCGCCAATAACAGAGGGACCCTGGAGTTtTGTACaCAAGATAGCAGTTCAGTGCTTGCACACATACTAGTTGAGAAGGGAA...|...ACCTCCAACACTGGGGATCACTTTCAACATGAGATTTGGAGACAAAACATCCAAGCCATAACAAGGTAGTTTATAGTTTTCAAAGAATTGGTCCATTCATCTAAGTTAAATTAATGTGCATAGGC	.	.	.
TALL064	C11orf54	MED17	+/+	+/+	11:93766226	11:93784304	intron	5'UTR	deletion/read-through	downstream	upstream	0	0	2	35	45	low	.	.	mismappers(1)	CCgTTAGTGTCCTCCAAAATGGGGTGCATGGACAGCAGGTACACATGAC___CTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCACTTGAGACCTGGAGGCTGAAGCTATAGTGAATCC...CCATCCTTGGCAACAGAGTCAGACCATGTTC|CGAGGAGGGAGCTTGCGGTGCGTTCTGGGAAAGTTGCTGGGCCAGCTCCTTTGTTTCCAGTCTGAGCGTTGCGTTCGGTTTCCCGAGGGTCTTC	.	.	.
TALL064	NTSR1	KLHL2	+/+	+/+	20:62730781	4:165297617	intron	CDS	translocation	downstream	upstream	0	2	0	7	18	low	.	.	.	GGTGcCGTCAGGATCTTGGTTTTGGTTTTTGT|AGCAGTAATAGCATGGGTGAACCATGACAAGGATGTGAGGCAAGAGTTTATGGCCCGACTGATGGAACATGTACGGTTACCTTTGCTTCCTCGGGAATATTTAGTTCAG___AGGGTTGAAGAGGAAGCATTGGTCAAGAATAGCAGTGCTTGCAAAGATTACCTCATTGAAGCAATGAAGTACCATTTGC	.	.	.
TALL064	ECD	UBQLN1	-/-	-/+	10:73163889	9:83679095	CDS	intron	translocation/5'-5'	upstream	upstream	0	0	2	102	5	low	.	.	.	TTtAGATGTTACTTCTGCATTGTTCTATGTGGTTTATATTTTGGAACTTTAAACATAGTTTTCAAAGAAGAATGGAAGAAACCATGAAGCTTGCTACGATGGAAGACACAGTGGAGTACT...|...GTGCCAAGTGCCATGTAATCAAAGTGAACTATGAAAGGGGCCAGTTTCCCCCCCAAAACCATAGTAAGCTGCAGTCAACGTGAGTCACTGTAACAAGAAAGAGTTCCCTCCATTTTAACCCTA	.	.	.
TALL064	SPPL2A	USP3-AS1	-/-	-/-	15:50732675	15:63565338	CDS	intron	duplication	upstream	downstream	0	0	2	4	2	low	.	.	.	GGACAATGCAC___GATTGCATGTCGTGGCAAAAACATGGAAGTGAGACTTATTTTTCTCTCTGGACTGTGCATAGCAGTAGCTGTTGTTTGGGCTGTGTTTCGAAATGAAGACAG___GTGGGCTTGG...|...TCCCTGCTAGGTAACTGGCTTTTAGTTTCAGTGGGGAAAAAAAAGAAAGAATAGGCTTAATGATTTCTCTATCCAAAGCTGCTGATTACATTGAGGGTGTGTGTGTTTTGGGGGTGTGTGTATG	.	.	.
TALL064	STXBP4	STXBP4(26890),HLF(64490)	+/+	./+	17:55160050	17:55200522	3'UTR	intergenic	deletion/read-through	downstream	upstream	1	0	1	5	1	low	.	.	.	CTGGATCCATCCCGTGATGAGTGTCCTGAATCTATCTCGCTCAGAGGAGAATGAAGAGGATTGCTCTAGAGAACTCCCCAACCAGAAAAGTTGATGGTTTTCCTTAGGAAGTGGAGCTACATGG...TGTTGAAGTGTGAAATGGAGACTCTGGACTTTGG|GAGAAAAAAGTAAATTCAGAGTTTCTGTATCTTCTTTGTTGCTCAAGATCACAAATTAATAAGGGGCAGAAGTAGGACTCAAACCCAGG	.	.	.
TALL064	FAM134B	RP11-797H7.1(575),SEPHS1P1(14940)	-/-	./-	5:16473262	7:64837457	3'UTR	intergenic	translocation	upstream	downstream	0	0	2	103	13	low	.	.	.	CATTTTAATGTAGCTACTCTTATTTATTTTTTCTTTCTGAGGTATTAAAATATCTGGACTGAGTTTTGCCAAATGTTAAAGGGAGAAGAGTTACTGAAGACTTTGAACACTTGCTTTTTGTGATTG...|...GGCACGTACCTGCCCTACCTCAaCCTGTTAAGGGAGCTGCTAAGAGAACATGCCAACTGCAGCCTTCCAAAGCCCGGACCGCTCAGCCCAGACAGTCCAGCCATAATAACCCCAGAAGATCAGG	.	.	.
TALL064	LMAN1	CCDC9	-/-	+/+	18:59330811	19:47263100	3'UTR	intron	translocation	upstream	upstream	0	0	2	123	3	low	.	.	.	AAGACAACCACATTTTAATTTGTTCACAGTATGTAAATCTGTCTAAATTTCAGTGAATTTCTGGTCAGTATGATGCAGCCTCTGAGCAGAATATTGACCAGTAAGAGGGTAAATAAAGTGGGGGC...|...AAAAAAAAAAAAAATCAATAAATTTTTGCTACCATGGAAGGAAG	.	.	.
TALL064	GXYLT2	PPP4R2	+/+	+/+	3:72979219	3:73037109	intron	intron	deletion/read-through	downstream	upstream	0	0	2	7	0	low	.	.	duplicates(1),mismappers(1),mismatches(1)	TGATAAACCAACATGAACATGATTTCATCACTGAAATCAGAAATATGTTGAGTTCTATGACAGCACAAATCATATTTCCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT...|...ATAGAAGGGG	.	.	.
TALL064	GXYLT2	PPP4R2	+/+	+/+	3:72967719	3:72998077	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	115	142	low	.	.	duplicates(1),read_through(8)	CATGTTGTACCCTCTGTACCAGAAGTACAAGAATGCCATCACGTGGGGAGACCAGGATTTATTAAATATTATTTTTTATTTCAACCCAG___AGTGTCTCTATGTATTCCCCTGCCAGTGGAACTACC...ACGGAAGCAACTGCAGAGAGGCTGAGCATGAAGGTGTGTCTGTTCTGCATGGAAACCGAGGCGTCTACCATGACGATAAGCAACCAACGTTCAGAGCACTCTATGAAGCAATACGGGAT|ATTTTGAGAAGAGGGGGAAAAAGGAAGTTTGTCCTGTCCTGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAAT___GATTCAGTGGTCCCAATTTAAAGGCTATTTTATTTTCAAACTGGAGAAAGTGATGGATGATTTCAGAACTTCAGCTCCTGAGCCAAGAGGTCCTCCCAACCCTAATGTCGAATATATTCCCTTTGATGAAATGAAGGAAAGAATACTGAAAATTGTCACTGGATTTAATGG___TATCCCTTTTACTATTCAGCGACTATGTGAAT...AACTATACAGGAACAGACAAATTTCTCAGAGGAGTAGAAAAG___AATGTGATGGTTGTTAGCTGTGTTTATCCTTCTTCAGA___GAAAAACAATTCCAATAGTTTAAATCGAATGAATGGTGTTATGTT	out-of-frame	GSNCREAEHEGVSVLHGNRGVYHDDKQPTFRALYEAIRD|ilrrggkrkfvlswisffvm*	.
TALL064	CTD-3131K8.2	RPL23P2(1039),RWDD2B(5312)	-/-	./+	19:17510754	21:28999072	exon	intergenic	translocation	upstream	upstream	0	0	2	12	18	low	.	.	.	CGAAAGCCACTGCGCCTGGCCATGCTTGTTGAATTTTTTAAGCTAACCCTCCTAGTGTGGTGGTGTGTCCCTCTGAGTGCCCAGAAAGGCCTCCAATCGAGTTCTTGCCTGGACAGAGGGCTGGA...|...GAGTGCTGTTTATTGTCTAAAATCCTACCTACCTCAGGGGTCTGCAGATAAGAATAGGATCTTCTTTGCTTCCACTTTCCTTAAAACAATAAATCATTGTTTTgGGGCTGCTGTCAACAGAAT	.	.	.
TALL064	LRRK1	RP11-505E24.2(4500),RP11-424I19.1(26037)	+/+	./+	15:101058201	15:101090566	intron	intergenic	deletion/read-through	downstream	upstream	0	1	1	3	11	low	.	.	.	GAAAAGAGGAGTCCAGGTAAGCTCCTGCGGGCTGCCCTGCCCCCTTTGTATTTGGGGTGGGAGGCCGCCGTGGAAT|CTCTGGAGCCCTGAGCCTGTAGTCAAGAAGTCTGACTGTGATGAGGCCGCCATGCTCTGAGGAAGCCCAAGCCACATGCAGAGGCTGTTGTGGCCAACAGCCTGGGCTGAGGTCGCACCAACAGCCAGCATCATGTGGGGGAAACATGAGAGATGACATCTTCAGATGGTTCCAG	out-of-frame	KEESr*apagcpapfvfgvggrrgi|sgalsl*	.
TALL064	USP45	PPARA	-/-	+/-	6:99446186	22:46238763	CDS	3'UTR	translocation/5'-5'	upstream	downstream	2	0	0	23	21	low	.	.	.	AAACCTTGAAATGAATGGGGATTCTTTAATGTTTGCCAGCCTCATGAATTCTGAGTCACGTCTGAATGAAAGCCCTACTGATGACAGTGAAAAAGAAGCCAGCCATTCTGAAAGCAATGTTGATGCTGACAGTGAGCCTTCAGAATCTGAAAGTGCTTCAAAGCAGACTGGGCTGTTCAGATCCAGTAGTGGATCCGGTGTGCA|CCAGGAGGTGGGAGAGGAGGGATGCGCCGCC	out-of-frame	NLEMNGDSLMFASLMNSESRLNESPTDDSEKEASHSESNVDADSEPSESESASKQTGLFRSSSGSGVh|qevgeegca	.
TALL064	KLHL24	RP11-154D6.1	+/+	-/+	3:183671183	6:71290941	CDS	intron	translocation/5'-5'	downstream	upstream	0	0	2	55	7	low	.	.	duplicates(1)	GGCAAAACAGACTTAGCAGCGTAGAATGTTATGATTCCTTTTCAAATCGATGGACTGAAGTTGCTCCCCTTAAGGAAGCCGTGAGTTCTCCTGCAGTGACTAGCTGTGTAGGCAAACTGTTTGTG...|...AATTACATCTATGAATGGAGACAGTCCAGGACTAGAGTCCTCAGCATCTGAGATCAATGGTATTTAAAGGCATGGGAAGATAAGGGGTTATCAAGGAGTGATGACGACTGAGGACCTTAGGCAC	.	.	.
TALL064	KLHL24	OGFRL1	+/+	+/+	3:183671183	6:71290941	CDS	intron	translocation	downstream	upstream	0	0	2	55	7	low	.	.	duplicates(1)	GGCAAAACAGACTTAGCAGCGTAGAATGTTATGATTCCTTTTCAAATCGATGGACTGAAGTTGCTCCCCTTAAGGAAGCCGTGAGTTCTCCTGCAGTGACTAGCTGTGTAGGCAAACTGTTTGTG...|...AATTACATCTATGAATGGAGACAGTCCAGGACTAGAGTCCTCAGCATCTGAGATCAATGGTATTTAAAGGCATGGGAAGATAAGGGGTTATCAAGGAGTGATGACGACTGAGGACCTTAGGCAC	.	.	.
TALL064	SPPL2A	USP3	-/-	+/-	15:50732675	15:63565338	CDS	intron	duplication/5'-5'	upstream	downstream	0	0	2	4	2	low	.	.	.	GGACAATGCAC___GATTGCATGTCGTGGCAAAAACATGGAAGTGAGACTTATTTTTCTCTCTGGACTGTGCATAGCAGTAGCTGTTGTTTGGGCTGTGTTTCGAAATGAAGACAG___GTGGGCTTGG...|...TCCCTGCTAGGTAACTGGCTTTTAGTTTCAGTGGGGAAAAAAAAGAAAGAATAGGCTTAATGATTTCTCTATCCAAAGCTGCTGATTACATTGAGGGTGTGTGTGTTTTGGGGGTGTGTGTATG	.	.	.
TALL064	RP1-267D11.6	RP11-57H12.5	+/+	-/-	12:120117593	1:95245831	exon	intron	translocation	downstream	downstream	0	0	2	17	46	low	.	.	.	GGTCCAGCTCCGAGCCGAGCCTGGGAGCTGAATGACCCAGTGTGCAAGGCGCACCTCGGAGACCGAAAGCAACCGCTCCCCCGGCTTCAATTTCACACCACCTGCAGATACACGTCTCAGAATC...|...AGCTGGGTTTAGCCTAATATTCCTGAGCTGGCTTAAAGAGAAATCTGAGTCTTTCAGGTAAAGATGAGCATGAAAATTAATTTGTATTTATTTTTTGTCAGCTACTATTTTACCCAAAAGGATC	.	.	.
TALL064	SNRPB2	ZNF696(1262),TOP1MT(5061)	+/+	./-	20:16738860	8:143299323	CDS	intergenic	translocation	downstream	downstream	0	0	2	4	16	low	.	.	.	GGATATAATATCAAAAATGCGTGGAACTTTTGCTGACAAAGAAAAGAAAAAAGAAAAaAAAAAAGCCAAAACTGTGaAACAGACTGCAACAAaaACAAACAAAAAGCCTGGCCAG___GGAACTCCA...|...TTCTGTCCCTTCTAATTTACATGCTATTGTTGTCTAGTATTTTAGTTGACACTATTCTTTTATATATAtATATGTATTCATATTTATAATTTTATTTGCTTGCCATTCCATCTTATATCTAAG	.	.	.
TALL064	OAT	PLCL2	-/-	+/-	10:124408616	3:16939663	CDS	intron	translocation/5'-5'	upstream	downstream	0	0	2	354	3	low	.	.	.	TGACCTTAACATCTAGAGCTTTCTATAATAACGTACTTGGTGAATATGAGGAGTATATTACTAAACTTTTCAACTACCACAAAGTTCTTCCTATGAATACAG___GAGTGGAGGCTGGAGAGACTGC...|...GGCTTAATCCATCTTTATAAATTTTATTCTAGAAATAACTACTTTTTTATTGTTTCACCCAATTTTAATACACTGCACACACATATCTGATAGTTTTCACATTTATTTATGTGTTTGTGGTCTGC	.	.	.
TALL064	UMAD1	INMT-FAM188B	+/+	+/+	7:7878661	7:30792116	exon	intron	deletion	downstream	upstream	0	0	2	74	5	low	.	.	.	AAACAGAACTGCCATTGGTCAATAAACTGTAAAGGGAAGAGGTAAATTGTGATAGAGAATTTTCTATGTCATGGGAAATTGAAATCAaATTTATTTTGATTACCAGCAATATGATTTGTTAACTC...|...ATTATTTCTATTTTATTTTATTTTTCATCCTATCCTTACTTTTATTCTTTACAATAAGCCTTAATGATTCCTACATTGATTGATTTCTGAATGTTAAACCAACCTTACATCCTAAGAATAAATC	.	.	.
TALL064	UMAD1	FAM188B	+/+	+/+	7:7878661	7:30792116	exon	intron	deletion	downstream	upstream	0	0	2	74	5	low	.	.	.	AAACAGAACTGCCATTGGTCAATAAACTGTAAAGGGAAGAGGTAAATTGTGATAGAGAATTTTCTATGTCATGGGAAATTGAAATCAaATTTATTTTGATTACCAGCAATATGATTTGTTAACTC...|...ATTATTTCTATTTTATTTTATTTTTCATCCTATCCTTACTTTTATTCTTTACAATAAGCCTTAATGATTCCTACATTGATTGATTTCTGAATGTTAAACCAACCTTACATCCTAAGAATAAATC	.	.	.
TALL064	PCSK7	IFT122	-/-	+/+	11:117205513	3:129515973	3'UTR	intron	translocation	upstream	upstream	2	0	0	440	4	low	.	.	.	CAGCTGCCTAGGTCCCCCAAGCATGGGGGACCCCTTCCCACATATAAGTTGAGAAGGTGCCTGCCATAGCCAGGAGCGCATCTCAATGGAAACATCACTGGGGTCACTTGGGAAGAGGACTTCGGGGTAGAGGCTGGGAGGAGCCCCTGGACATGCCTGTCCTGAAAGCGGCTGCCTCCATTATCCATTCCCA|AGAGGCCACACACACACACAGACACACACGCACACACAGACTGCCC	.	.	.
TALL064	ATXN7L2	SENP5	+/+	+/+	1:109488929	3:196932860	CDS	3'UTR	translocation	downstream	upstream	0	0	2	50	33	low	.	.	.	CCAGAGACCAAAAAGATCTGTACCCGCCTGTTGACCTGCAAG___ATCCACTCAGTACACCAGCGCCGGGAAGTCCAGGGCCGGGCCAAGGACTTTGACGTGCTGGTGGCAGAGCTGAAGGCCAACTC...|...GGCATGCAGAAGAGACAGAATTGTTCCTGTAAGAAAATCAACGCCGAGAGAGAGCTGCCCAAATCCAGTGACTCTTCCACTTCCAGTCTCATGCTTCATAGGGCACCTTGAGGTGTGCTGCCC	.	.	.
TALL064	XPNPEP1	ITGA1	-/-	+/+	10:109865145	5:52906000	3'UTR	intron	translocation	upstream	upstream	0	0	2	253	3	low	.	.	.	TGCAGAAACAGGGCCGCCAGGAAGCTCTCGAGTGGCTCATCAGAGAGACGCAACCCATCTCCAAACAGCATTAATAAATACCTCCCCGGTTTTGTTTTTGTAAAATGCTCTGG...|...CCCACATATTCAGTAACAACTGGGAACAGGGCCCTGTGTTAGGTTCTTTGGAAGGATGTATAGTGTCTGTATCTTTGTCTTCATGTTGGATGGGTGTaGAGGTAAGATATACAATAGATGTGGAT	.	.	.
TALL064	NPAT	BCL7C	-/-	-/-	11:108198684	16:30892947	intron	CDS	translocation	upstream	downstream	0	0	2	2	100	low	.	.	.	GGGtCCCAgCGTGAGTAGAGCTCCATGTGAGAGGGGATTCCAAAGGCAGGTAGTCCCCATGTGTGGTTGAGTCTGAGGTTTTCATGGGCTCAGAATGGAGGTTTTTATGGGCTCAGAGTGC...|...AGCGAAGGCGGGCAGGTGGCGGGGCAGAGAGATCCCGTGGCCGGGAACGTCGGGGCAGGGGCGCCAGTCCCCGAGGGGGTGGCCCTCTCATCCTGCTGGATCTTAATG___ATGAGAACAGC	.	.	.
TALL064	PPP1R16B	CDC73	+/+	+/-	20:38922649	1:193218396	3'UTR	intron	translocation/5'-5'	downstream	downstream	0	0	2	51	4	low	.	.	duplicates(1)	GAAGCTATAGCCCTCTCCCCAACAGGTCTCTCTTGTTGGCCAGAGGGCCTGCTTCCCATGGGCATTGCAAGTGCCACCGTGCGGGGCCTGGCTCTGCACACCCAGGAAAAGTCTGCAGACCCCC...|...AGAAAAATGAAATCTGGTAGTTTGCTAGGAATAGCAGTGAATCTGTAAGTTGTTTTGGGCAGTTATGGCCACTTTAACAATATTGATTCTTCCTATCCATGCACATGAAATGTTTTTCGATTTGT	.	.	.
TALL064	XIAP	PCNXL4	+/+	+/+	X:123860293	14:60115719	splice-site	splice-site	translocation	downstream	upstream	0	2	0	9	336	low	.	.	.	GCCGCGCCTCCTCCGGGACCCTCCCCTTGGACCGAGCCGATCGCCGCGGGGCAGTTCGGGCCGGCTGTCCTGGCGCG|TATCACCTTTTGCCATGATAGCATTTCTTTCATTGGACAGTTCCTTAC...AGCCTTTAGAATG___GTATGGCAGAATACAGAAAATGCTTTATTGGAGACAGTCATTGTATCAACAGTACACTTGATCTCCAGTACAGACATATGGTGGAACAGAAGCCTGGATACAGGACTCAGAC	.	.	.
TALL064	MAK16	G3BP2	+/+	-/-	8:33489139	4:75655870	splice-site	splice-site	translocation	downstream	downstream	0	1	1	70	340	low	.	.	.	CTGGAGCAAATAGATGAAAATCTGATTTACTGGCCCCGTTTCATTCGACACAAATGTAAGCAGAGATTCACCAAGATCACCCAATACCTAATTCGAATTAGAAAACTTACACTAAAGCGACA|AATCAGAAGATGAAGTAGAAGAGGAACAAGAAGAAAGACAACC...AATGGCATAGAGGAGCCTTTGGAAGAATCCTCTCATGAACCTGAACCTGAGCCAGAATCTGAAACAAAGACTGAAGAGCTGAAACCACAAGTGGAGGAGAAGAACTTAGAAGAACTAGAGGAG	out-of-frame	LEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRq|irr*	.
TALL064	WAPAL	WDR75	-/-	+/+	10:86499718	2:189467468	splice-site	splice-site	translocation	upstream	upstream	0	2	0	102	254	low	.	.	.	TGATAATTCCCAGGACAGTCAGTCTGGTACTAACAATGCAG|AAAAAGCTGTTGGCTGGACCTGTGACTTTGTTGGTAGTTATCACAAGTATCAAGCAACTAACTGTTGTTTCTCCGAAGATGGTTCTTTACTAGCAGTTAGTTTTGAGGAAATAGTCACAATATGGGATTCTGTAACATGGGAACTTAAATGTACATTTTGCCAACGAGCTGGG	in-frame	DNSQDSQSGTNNA|eKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSVTWELKCTFCQRA	.
TALL064	SNHG16	MARCH6	+/+	+/+	17:76557857	5:10423735	splice-site	splice-site	translocation	downstream	upstream	0	2	0	310	473	low	.	.	.	GGCCACTCCAGTCGGTGTTGAGCACGGCGAGCAGTCTCAGGCCTTTAGTGATGATG|GACTGGGCACTTGGAGTCCTGCATGCCAAAATCATTGCAGCTATAACATTGATGGGTCCTCAGTGGTGGTTGAAAACTGTAATTGAACAG___GTTTACGCAAATGGCATCCGGAACATTGACCTTCACTATATTGTTCGTAAACTGGCAG	.	.	.
TALL064	MCM3AP	R3HDM1	-/-	+/+	21:46270401	2:135631718	splice-site	splice-site	translocation	upstream	upstream	2	0	0	189	94	low	.	.	.	GGGCAGCCTGCGGGATTGGTATGACTTCGTGTGGAACCGCACGCGTGGCATACGGAAG___GATATCACGCAGCAGCACCTCTGTGACCCCCTGACGGTGTCCCTGATTGAGAAGTGCACCCGGTTTC...ACCTGAACGCTTGTCTTTTACACTGTTACTTCAGTCAG|GGACAGAATGATGCTGCTGAAATTGGAACAAGAAATTTTAGATTTCATTGGTAATAATGA___GTCTCCACGTAAAAAATTCCCCCCAATG	out-of-frame	LNACLLHCYFSQ|gqndaaeigtrnfrfhw*	.
TALL064	HOOK2	C17orf62	-/-	-/-	19:12792324	17:82446696	splice-site	splice-site	translocation	upstream	downstream	0	2	0	525	707	low	.	.	.	CTGATGGTGGTCGTCGGGTACGAGCTCCCGGTCCCGACGGCAGCCCCGGCGCCTCCCGAGGACGCAGAGGCTGGGGAGTAGCTGCTGAG|ATAGCCTGGGCTGGAAGCTCTTCTACGTCACAGGCTG...TCGACAAGAGCACAGGGAAGGTTGTTTTGAAGACGTTCAGCCTCTACAAGAAGCTGCTGACTCTTTTCAGAGCTGGCCACGACCAGG___TGGTGGTCCTGCTCCATGATGTCCGTGATGTGAGCG	.	.	.
TALL064	ITGA4	BAG5	+/+	-/-	2:181485992	14:103561192	splice-site	splice-site	translocation	downstream	downstream	0	2	0	547	64	low	.	.	.	CAAGATTTGGGGAATCTATAGTTAATCTTGGCGACATTGACAATGATGGCTTTGAAG|TGCTTGTGAAACTGAACACAACAAAAGTATGGATATGGGAAACCAACATCCTTCTATTAGTAGGCTTC...AGGATTCTAACAAAACAGCTTTTTGAAATAGACTCTGTAGATACTGAAGGAAAAGGAGATATTCAGCAAGCTAGGAAGCGGGCAGCACAGGAGACAGAACGTCTTCTCAAAGAGTTGGAGCAGAA	out-of-frame	RFGESIVNLGDIDNDGFE|vlvklnttkvwiwetnilllvg	.
TALL064	SLA2	KIF3A	-/-	-/-	20:36645837	5:132703619	splice-site	splice-site	translocation	upstream	downstream	0	2	0	603	31	low	.	.	.	CCCCAAAGCCCTAACCTGTCCAGCCAGAGCATGCGTCTCAGCAGAGCTGTCTTCCCAAGCCTTTGATGACAAACCA|GAAAAAAGAAAGTCTCCCCAGACAAGATGATTGAAATGCAAGCAAAAATTGATGAGGAGAGAAAAGCACTTGAAACAAAGCTCGACATGGAAGAAGAAGAAAGAAACAAGGCTAGAGCTGAATTAGAG	.	.	.
TALL064	ST13	XPNPEP3	-/-	+/+	22:40832569	22:40868999	splice-site	splice-site	inversion	upstream	upstream	2	0	0	1420	12	low	.	.	.	CCAGACACTGATGCTCCTCAAGAAATGGGAGATGAAAATGCGGAG___ATAACGGAGGAGATGATGGATCAGGCAAATGATAAAAAAGTGGCTGCTATTGAAGCCCTAAATGATG___GTGAACTCCAGAA...TGCCCTTGCCTGTAAATTGGATTATGATGAAGATGCTAGTGCAATGCTGAAAGAAGTTCAACCTAGG|GATGTATGTTGTGTTCACAGCGAAGGTACTCCCTTCAGCCTGTCCCAGAAAGGAGG	out-of-frame	ALACKLDYDEDASAMLKEVQPR|dvccvhsegtpfslsqkg	.
TALL064	ABI1	APBB1IP	-/-	+/+	10:26823138	10:26562326	splice-site	splice-site	inversion	upstream	upstream	1	0	0	233	262	low	.	.	.	CAAGAGAAAAGCTTTAGAGGAGACCAAAGCCTATACAACCCAATCTCTAGCTAGTGTTGCTTATCAAATAAATGCATTGGCCAACAATGTACTCCAGTTGCTGGATATCCAAGCCTCTCAGCTTCGGAGAATGGAGTCTTCCATCAATCATATCTCACAG|GACCTAAAACAGGCACCACCCAGCCCAATGGACAGATTC	out-of-frame	KRKALEETKAYTTQSLASVAYQINALANNVLQLLDIQASQLRRMESSINHISQ|dlkqappspmdr	.
TALL064	B3GNTL1	FUS	-/-	+/+	17:82956695	16:31182398	splice-site	splice-site	translocation	upstream	upstream	1	0	0	353	1423	low	.	.	.	CTGGCAAGCAGGGGCGCCGGCTGTACCGCAGCTTGACTGCCGGCAGCCAGCGCAAG___GTGGTGGCATTCTGTGACGTGGACGAGAACAAGATCAGGAAAGGCTTCTATTGCCACGAGGACTCTC...GCCACCCTTCGTCATCTGCGTGAAGCTG|ATTATACCCAACAAGCAACCCAAAG___CTATGGGGCCTACCCCACCCAGCCCGGGCAGGGCTATTCCCAGCAGAGCAGTCAGCCCTACGGACAGCAGAG	out-of-frame	PPFVICVKL|iipnkqpkamgptppspgraipsravsptdsr	.
TALL064	CHD2	IFI44	+/+	+/+	15:92927330	1:78659312	splice-site	splice-site	translocation	downstream	upstream	0	1	0	86	1589	low	.	.	.	GAAG___ATGTGGGAAGAATATCCTGATGTTTATGGGGTCAGGCGGTCAAACCGAAGCAGACAAGAACCATCGCGATTTAATATTAAGGAAGAG|TTTAATCCCATGGAATCAATCAAATTAAATCATC...TCATTGTGTGGCATTTGTATTTGATGCCAGCTCTATTCAATACTTCTCCTCTCAGATGATAGTAAAGATCAAAAGAATTCGAAGGGAGTTGGTAAACGCTG___GGAATCTAAGGGAGGAAATTAT	in-frame	KMWEEYPDVYGVRRSNRSRQEPSRFNIKEE|FNPMESIKLNH	.
TALL065	CD34(42695),PLXNA2(68145)	CD34	./-	-/-	1:207954097	1:207900003	intergenic	splice-site	deletion/read-through	upstream	downstream	105	100	59	849	2612	high	.	.	duplicates(7),low_entropy(12),mismappers(10),mismatches(24)	GTTTCTTCTAGCTTGTTGCAGAAGAGGAAGTGGAGATTTGAAGCATGAGAGGGATTTCAGGCTCCAtTGCTGGCTTGAAGATGGAGGGGACCACCTGTTAAGAAATTTATGTGGCTCTAGGAGTTGAAAGCAGCCTCTAGCTGACAGCCAGCAAGAAAACAGGAATATCAGTCCTACAACCACAAGGAACTGAGTTTTGCCAAGAATAAGAATGGGCTTGAAGTAGAGTCTTCCTCAGAGCTTCCAG|CTTCTGGGTTCATGAGTCTTGACAACAACGGTACTGCTACCCCAGAGTTACCTACCCAGGGAACATTTTCAAATGTTTCTACAAATGTATCCTACCAAGAAACTACAACACCTAGTACCCTTGGAAGTACCAGCCTGCACCCTGTGTCTCAACATGGCAATGAGGCCACAACAAACATCACAG___AAACGACAGTCAAATTCACATCTACCTCTGTGATAACCTCAGTTTATGGAAACACAAACTCTTCTGTCCAGTCACAGACCTCTGTAATCAGCACAGTGTTCACCACCCCAGCCAACGTTTCAACTCCAGAGACAACCTTGAAGCCTAGCCTGTCACCTGGAAATGTTTCAGACCTTTCAACCACTAGCACTAGCCTTGCAACATCTCCCACTAAACCCTATACATCATCTTCTCCTATCCTAAGTGACATCAAG___GCAGAAATCAAATGTTCAGGCATCAGAGAAGTGAAATTGACTCAGGGCATCTGCCTGGAGCAAAATAAGACCTCCAGCTGT___GCGGAGTTTAAGAAGGACAGGGGAGAGGGCCTGGCCCGAGTGCTGTGTGGGGAGGAGCAGGCTGATGCTGATGCTGGGGCCCAGGTATGCTCCCTGCTCCTTGCCCAGTCTGAGGTGAGGCCTCAGTGTCTACTGCTGGTCTTGGC	.	.	.
TALL065	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	13	14	3	53	43	high	.	.	low_entropy(3),mismappers(1),mismatches(1)	ATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGaCC	out-of-frame	IVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL065	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	8	7	3	43	36	high	.	.	low_entropy(1),mismatches(7)	AGATCTTAACCCCCCAATTTCATCACCCTCACCTCCCCCCTTTATTTTTCTCTCGCTCCTCTTCCCCGCCTGCTTCCCTCCGCCGCGCTCCCCCCTCCTTTTTTTTATTTGCATCTCAAGTCC...CGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCA	.	.	.
TALL065	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	10	0	51	17	high	.	.	mismatches(2)	CCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGG	.	.	.
TALL065	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	8	0	34	31	high	.	.	low_entropy(1)	CAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG...GGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTC	.	.	.
TALL065	GUSBP9	RP11-497H16.7(2323),RP11-497H16.8(13562)	-/-	./-	5:71202253	5:70481538	splice-site	intergenic	deletion	upstream	downstream	1	1	0	17	64	high	.	.	mismappers(1)	GACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCGGCTGCAGCTGGCCGCCC...AGGGCTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTG...CCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTTCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGAAACTAGCCTGGCCAACGTGGC	.	.	.
TALL065	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	6	4	7	37	19	medium	.	.	mismappers(1)	GGTTTTCCCACCACCTCCAAATCATGCAAGACACAGG___...CGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCAT...GAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGC	.	.	.
TALL065	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	10	3	0	309	69	medium	.	.	mismappers(1),mismatches(2)	GCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGcCAG	.	.	.
TALL065	AC079781.7(371),AC079781.8(29644)	ASNS	./-	-/-	7:97908795	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	1	5	51	medium	.	.	.	CCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGcGGGAGGAGGACGACGTCCCcCCCGAAGAGA...CTTAAAACACCTGTAAGAGAATCATCCAGGCGGCTTGCTCACTCTGCATGCAGGCCCTTTAGAATGAGAGTCAGAATCCCTGGGGCTGGAGCCACAAAATGAAATGACATTTCAACGAGTTTGTCATCATGTGAGAGAGAATAG|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCtTTTCTGTTCAGTGTCTGAGTGCTA	.	.	.
TALL065	AP004371.1(34027),MIR8052(63181)	C11orf44	./+	+/+	11:130603554	11:130713194	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	1	8	33	medium	.	.	.	CTCCCTTCTGCCTTTACATACAAGATGCCTGTTGCTGAGAACACTTGTTCCCACTTCTCTAGCAGGCAAGGATCTGGGCAGGACAACAACCACAG___AATCTCAAAGAATGAGCCCTGTGTTTGGGACCTTGGGACCAGGATCAGGCTGCCTACGCTGACATCTCAGCTCTGCCAATTAAGAGTTGTATGATTTGG|GAGACTACAACTCAGGAGCAGCTGGATGAGATGGAAGAGATCCCCAGAGAGAGCCAGTGTGGGAGGCAGGACTTCCATGCCCTCTCCTGTCCCACCGCCTCCCCAAG___AGACAGAGTCTTGCTCTGTTGTCCAGGCTGGAGAGCAATGGTGCCA	.	.	.
TALL065	AP004371.1(86757),MIR8052(10451)	C11orf44	./+	+/+	11:130656284	11:130713194	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	0	3	33	medium	.	.	mismatches(1)	TGGTGGTACACATGCCTTGGCCACTTCCGCTTTAGTGGAATAACTAATGCTGTCATTCATGTTGATGACCTGGCTGAAACCCTGACACCGAATTCCTGCAGG...GGGATTGGATTTACCCTCACACTTGACCCAACTACAGCACTGGACAAAATGTATGAAACAATGACACTCAGGACATTGACCATCAAGTGACAAAGGAAAAGTAGGAGGGGAGCCCTGTGATTACTCCAGCTTGCAACCTGCAAAAAATATTCAGGTCACAGTGCAG|GAGACTACAACTCAGGAGCAGCTGGATGAGATGGAAGAGATCCCCAGAGAGAGCCAGTGTGGGAGGCAGGACTTCCATGCCCTCTCCTGTCCCACCGCCTCCCCAAG___AGACAGAGTCTTGCTCTGTTGTCCAGGCTGGAGAGCAATGGTGCCATCATAGCTCACTGCAGC	.	.	.
TALL065	NAT10	NAT10	+/.	+/.	11:34107062	11:34107838	exon	intron	duplication	upstream	downstream	2	0	1	6	4	medium	.	.	.	.	.	.	.
TALL065	TCERG1	TCERG1	+/.	+/.	5:146505010	5:146505814	intron	intron	duplication	upstream	downstream	0	2	1	0	6	medium	.	.	.	.	.	.	.
TALL065	USP48	PITHD1	-/-	+/+	1:21701498	1:23785675	splice-site	splice-site	inversion	upstream	upstream	0	2	0	276	154	medium	.	.	.	CCGGAACTGAATGTGAGTAGTTCTGAAACAGAGGAGGACAAGGAAGAAGCTAAACCAGATGGAGAAAAAGATCCAGATTTTAATCAA|GTACAAGAATATTCCACAGATGTCCTTTGATGATACAGAAAGGGAGCCAGATCAGACCTTTAGTCTGAACCGGGATCTTACAGGAGAATTAGAGTATGCTACAAA___AATTTCTCGTTTTTCAAATGTCTATCATCTCTCAATTCATATTTCAAAAAACTTCG	out-of-frame	PELNVSSSETEEDKEEAKPDGEKDPDFNQ|vqeystdvl*	.
TALL065	TRRAP	FBXO18	+/+	+/+	7:98967698	10:5903020	splice-site	splice-site	translocation	downstream	upstream	0	2	0	84	107	medium	.	.	.	GTCGTGTCTACGAGCGCTTGCTCTATGTGACCTGTTCGCAGAACTGGGAAGCCATGGGGAACCACTTCTGGATCAAGCAGTGCATTGAG|TGAGACGGTTTAAGCGGAAGCATCTTACTGCCATTG...GGCTCGGAGTCACTTGGCTGTGACCCAGCCCTTCGGTCAAAGATGGACAAACAGAGATCCGAACCATGGTCTCTATCCTAAACCGAGAACAAAAAGAGGGAGTAGGG___GTCAGGGAAGTCAAAG	out-of-frame	RVYERLLYVTCSQNWEAMGNHFWIKQCIE|*	.
TALL065	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527568	16:29505872	exon	5'UTR	deletion/read-through	upstream	downstream	1	1	8	15	15	low	.	.	mismatches(1)	GCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAGGTATAC?GTGTACCAGAATCAGTTGTTGGAGAAAATTAAA|GTATGATCTCGTGAAACCTTGAGAGAAACTGAATGACGAATGAAACTATTGTTCCTGTTTCACACAGAAGAAAACTGAG___GTTGGCACTCATCATGAGCCCCTGTTCTCATTCTGCAAATGGTGAAGCTCTCTATTGTCCTGACCCCACAGTTCCTGTCCCATGACCAGGGCCAGCTCACCAAGGAGCTGCAGCAGCATGTAAAGTCA	.	.	.
TALL065	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528951	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	19	166	low	.	.	low_entropy(1)	CTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCaTTTCCGACAAGTTATAAAGTTaTCAaTACtCT...GTCAAATGTACCGAGCAATTAGAATTGTTACCAGGAGAAAATATCAATCTACTTGCTGGAGGGTCAAAAGAAAAAATAG___ACATGAAAAAACTGCTTCGTAACATGTGAAGTCCAGATCCAAGGGAACCTCAGAAATCCATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCaTTTCCGAC	.	.	.
TALL065	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	6	0	68	37	low	.	.	low_entropy(4),mismatches(4)	CATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTgGGTATAAc___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTgTAAGCAGCTTCCAGAaACGGAGC	.	.	.
TALL065	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	3	3	1	45	19	low	.	.	mismappers(6)	G___GAAACACATGAAAAATGCCACGATTGTAATGTCTGTGAGGAGAGAGCAAGGCAGTTCTTCAGGGGAG___GGGTCATTGTCATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGC...GCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAG...GACTGCTGCTTCCATGTGCACGCCTGcTTTaAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGC	out-of-frame	PDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL065	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	0	2	51	99	low	.	.	.	GTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCAC?AGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACG	.	.	.
TALL065	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	4	60	102	low	.	.	.	CCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTT[t]GCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGC	out-of-frame	WIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL065	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	74	102	low	.	.	.	CTTATTTAGTGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGG...GTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GcGG	out-of-frame	li*WPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL065	DDTL	AP000350.6(2383),AP000350.7(8041)	+/+	./-	22:23972217	22:23931957	3'UTR	intergenic	inversion	downstream	downstream	0	5	0	38	19	low	.	.	.	AATGGAGATTgTCTACCTCATGGGGATgGCgTGTCTTGTCTGAGCAAAGGGAGAG|TGCACCAAACTTTGGGTAACAAACAgTTTAAACTTGTTTTTTTAGACATTCAGTAAGCCCTTTCTCCCCCCTCCCCAAACCGTTTGATTACAAAGAAGCACAATGGGTTAACTGTGGCAAAACATAAGAAATAAGGCAGGGGAGGCAGGTGCAGCCTTGACAACATAAGAATATCCAAACAATGTTGTCAATATCAAAAGAAAAA	.	.	.
TALL065	RP11-56A10.1(210491),XKR4(21995)	XKR4	./+	+/+	8:55080394	8:55357678	intergenic	splice-site	deletion/read-through	downstream	upstream	2	2	0	33	19	low	.	.	mismappers(2)	CTTTGGGAGGCTGAGGCAGGAATTATCACTTGAGGCCAGGAGTTCAAGACCAGACTGGGCAACATAGTGAGACCCTGTCTCTGCAAAAATAAAATATTTAAAAAAAAA[a]TGAGAAAGAAATAAAC...CTGGGGACATATCAAATGAAGGTGCGTGCAAGTGACACTAAAGCTCCAGGACGTGATGCAGATGTCCGCATAACTGGCTGGGACAAAGAGCGCATCTGAGCCTCTGCAACTCTCTCATCTCAGGACCTCTCAGACCCCTTGGAAGAGGAAAG___GTTGGGATTCTTCTGGAGGGAGTATGGAAGGAGAAGGAATGCACTTGAAACATGTCTTGTCAAG|ATATTTCCACACAATATACTTAGGTATTCGAAGCCGACAGAGTGGGGAGAATGACAGATGGAGGTTTTACTGGAAAATGGTATATGAGTATGCGGATGTGAGTATGCTGCATTTGCTAGCCACCTTTCTGGAAAGTGCTCCACAGCTGGTCCTGCAGCTCTGCATTATCGTACAGACTCATAGCTTACAGGCCCTCCAAG___GTTTCACAGCG	.	.	.
TALL065	VANGL2(18687),SLAMF6(37665)	SLAMF6	./.	-/.	1:160447365	1:160490494	intergenic	intron	deletion/read-through	downstream	upstream	0	4	0	120	13	low	.	.	.	.	.	.	.
TALL065	FSTL4(19844),AC005178.1(88087)	FSTL4	./-	-/-	5:133632408	5:133603993	intergenic	splice-site	deletion/read-through	upstream	downstream	0	1	3	16	130	low	.	.	low_entropy(2),mismappers(2),mismatches(2)	CAAGAGCCTGAATGAGATGCACCTGGAAGTGGATTCCGCCCTCGTCAAGCCTCCCACTGCGAATGTGGCCCAGCTGACACTTTGACTTCAGCCTGGTGAGCCTGTGAGCAGAGAATTTAGTCACGCCTG...TAAAAACTGTGGAGGCTGGGCAGGCACAaTGGTACACATCTGTAATTCCAGCACTTTGGGAGGTCAGGTTGTGTGGATCATTGAGCCCAGAATTTCAAGCCCAGCCTGGGCAACATAGTGAA...GTCAACCCAGAATCCCACATCTAGAGAAAATATTCTTCAGGAATAAAATGATAATTAAGACAATTCCTAGGAAAAGGAAAACTAAGATAATTTGTCTCCAGCAGAACTACCTTGAAAGAATGTCTAAAGGAAGTTTTCTAAAAAGAAAGAAAATAAAAATGGAATTTTGGAACATTGAGAAAGAAGAAAAATCATG|ACTCATCAAAATGAAACCAGGAGGCTTTTGGCTGCATCTCACACTGCTCGGAGCCTCCCTGCCGGCTGCGCTGGGATGGATGGACCCAGGAACCAGCAGAGGCCCGGATGTGGGTGTGGGGGAGTCACAGGCA	.	.	.
TALL065	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	2	0	2	15	4	low	.	.	mismatches(1)	AGAcGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACC	.	.	.
TALL065	ARHGEF9	LINC01278	-/-	-/-	X:63638124	X:63420310	CDS	intron	deletion/read-through	upstream	downstream	0	0	3	27	5	low	.	.	mismappers(2),mismatches(1)	GTCCTATTCTGCTCTGAATGTAGATCAGGATTAAACTTTCACTTTAGGCCTCCAGGTTCCTGGAATCCTCCATTAATGTGGATTTTGCTTTGATGGTTGCAAACCTAC___CTGGTCCCCGACGGC...|...ACATATAAAGGAATCCTCGTCAGACACACTGTGAATTTTTCAGGAGAAACCCATGCAGGTCAAGAGCAAATGAG	.	.	.
TALL065	RP11-764K9.1	LINC01410(5041),RP11-262H14.5(19221)	-/-	./-	9:63811553	9:62818527	exon	intergenic	deletion	upstream	downstream	0	0	3	2	24	low	.	.	.	CCTATTAGCAGTGAGGATTTTTTTTTACCTTTAGGTGATCATTTATTACTCATTAATGTCCTTTTCTTCCTGAtTGAAGTACTCCCTTTAGCATTCCTTTAGGACAG___GATTTGTCCCCAGTGCCTTATTTAGTTCACTTGGTGAGGTCATGTTTTCCTGGATGGtGTTGATGCTAGTAGATGTTCTTCAGTGTCTGGACATT...|...ACCAACACAAATGTCCgACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGCAGGGACATGCAGGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAAGACAAAAA	.	.	.
TALL065	SMAGP	POU6F1	-/-	-/-	12:51246751	12:51210449	splice-site	intron	deletion/read-through	upstream	downstream	0	1	2	91	4	low	.	.	.	CTCAACCACTAGTGACAATGACCAGCCTCCTGACTACTCCTTCTCCAAGAG___AAGAACTGATGACCACCCCAATTTTACAGCCCACTGAGGCCCTGTCCCCAGAAGATGGAGCCAGCACAGCACTCATTGCAG|ATTGGCTACTGCTGCCTTACGCCTAATGACCTTTG...CCGGCCCCCACCCGACCCTGACAAGTGACCATGGATCCTGGAGCCGGGTCAGAGACATCTCTGACTGTCAATGAGCAG___GTCATCGTGATGTCAGGTCATGAGACCATCCGAGTGCTGGAAGTCGG	out-of-frame	MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIA|dwlllpya*	.
TALL065	SMAGP	POU6F1	-/-	-/-	12:51246751	12:51204368	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	91	5	low	.	.	low_entropy(1)	GCTCGGGGTCCTCtcTCGGCCTCTGCTGGCCTCCGCGACTCCGCGGTGCCCGCCCCCGTTGAGTTCAAAAGGACGCGCGGAGCGGCGCCGGCCCTTCACCAGCAGCCCGTCCGACTGGAA...CTTGGGAGAACCTGGCACCAGAGGCTTTCCTGGGACTTCCAGGACTCAAAGCCATAGGGGCCCACCCGCTACATTCCTGTCTTTGCCCCTCTTCCTACAGATCTGCCTCTTCTCCAAGAAACTC...AGTGACAATGACCAGCCTCCTGACTACTCCTTCTCCAAGAG___AAGAACTGATGACCACCCCAATTTTACAGCCCACTGAGGCCCTGTCCCCAGAAGATGGAGCCAGCACAGCACTCATTGCAG|GTCATCGTGATGTCAGGTCATGAGACCATCCGAGTGCTGGAAGTCGGAGTGGATGCCCAACTC	out-of-frame	MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIA|ghrdvrs*	.
TALL065	RP3-492J12.2	ZNF831	+/+	+/+	20:59123505	20:59190984	splice-site	5'UTR	deletion/read-through	downstream	upstream	0	3	0	25	12	low	.	.	.	AAGAAGTTCCGTCGGGGGTGGAGGACTTTTTCCAAGCCTTTGTTTCTGTGGAGTCTCTGTGCATGGCCTGCTGTGATGAG|GTTTTCCAGCATTGTGGGCCATCCAGATGATGCGGAATGGAGGTTCCAGAACCCACCTGCCCTGCCCCTCCTGCGAGGGACCAGCCAGCTCCCACTCCTGGCCCTCCAGGGGCCCCAGGTGGCCAGGCCTCACCTCACCTGACCCTGGGCCCTGTCCTTCTGCCGCCAGAGCAGGGCCTGGCCCCCCCCACTGTGTTCCTGAAGGCCC	.	.	.
TALL065	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	73	299	low	.	.	mismatches(1)	GTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGAC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL065	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	17	299	low	.	.	read_through(6)	AAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAG	out-of-frame	NMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL065	LRRC8D	RP11-302M6.5(27042),RN7SKP272(20524)	+/+	./+	1:89936249	1:89967189	3'UTR	intergenic	deletion/read-through	downstream	upstream	0	1	2	4	1	low	.	.	.	CCTGAGCACCTCGTGTCATAGATTTTATACTtTTACAGACTTGGAATGCAGTAGAG|AACTGAGCTGTGGGACGCTTACCCTCATGATATTCCCTTACTTTGAGATAACTGCGATTCTCTCACTT...GCCATCTATAAGCCAAGAAGAGAGGCCCCAGAAGAAATGAACGCTGCTAATACCTTGATCCAGGGCTTCTTGCCTCCAGAATGG	.	.	.
TALL065	ITM2A	RP11-180D15.1(71071),AL590222.1(1112)	-/-	./-	X:79366874	X:79156919	exon	intergenic	deletion/read-through	upstream	downstream	0	0	3	14	242	low	.	.	.	CTGTCTCTGGGGTTTACCCGGTCGCCTCGGTTCTGTCTCCTTGCGGCACCTTCTGCTTACCGCACCCTCTGTCACTCTGCATTCCCGCGTGTCGTGCCATGTTCTGTCTGTTCCAGCTCACACC...|...CCTGCTGTTTTCTTCGGTGCTGATGGAACTTCTTGATCAGAGCAATAGGGTCTCCTGAGGAAGTGTTGGAGAATCTGGCACGATTAATTCATTCATGC___CATTTCAGTTTCTTTCTGTTTTCTTCAGAGATCTCCAAAGAATTCATGTGATGGCCACTCCAAAAAGGATGCTACTGATTTGTGC	.	.	.
TALL065	RP11-120D5.1	MID1	-/-	-/-	X:11002049	X:10809511	intron	intron	deletion/read-through	upstream	downstream	0	0	2	1	1	low	.	.	mismappers(1)	CCATGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAACATGCaGTGTTTGGTTTTTTGTCCTTGTGATAGTTTACTGAGAATGATGATTTCCAATTTCATCCATGTCCCTACAAAGGAC...|...TTGCTATTGTGAATAGTGCtGCAATAAACATATGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGC	.	.	.
TALL065	PCLO	ZSCAN25	-/.	+/.	7:83159753	7:99630809	intron	3'UTR	inversion	upstream	upstream	0	0	2	3	48	low	.	.	.	.	.	.	.
TALL065	BEND4	ATP8A1	-/.	-/.	4:42143305	4:42436890	intron	intron	deletion/read-through	downstream	upstream	0	0	2	3	0	low	.	.	mismatches(1)	.	.	.	.
TALL065	RASA4	POLR2J	-/-	-/-	7:102581091	7:102476270	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	1	1	53	498	low	.	.	.	CAACCTCCTTCCTCCCCCGGTTGCCCCCCACTCTAAAGCCTCCTCCCTCCCAGCGTCCACTGGCTCCAGGCTCCTCACAACAGCAGCTCATAGACACGGGGCGTCTCCAGGTGGTCCCAGCCCTCCAGATGTTTCTAGCTCTCCAG|GATCACCATT...CATCACCGACCTCATCAGTGAGCTGTCCCTGCTGGAGGAGCGCTTTCGG___GTGGCCATAAAAGACAAGCAGGAAGGAATTGAGTAGGGGCCAGAGGGGGCTCTGCTCGGCCTGTGAGCCCCGTTCC	.	.	.
TALL065	AASDH	MKI67	-/.	-/.	4:56345914	10:128106280	intron	CDS	translocation	upstream	downstream	0	0	2	34	38	low	.	.	.	.	.	.	.
TALL065	EEF1A1P6	FAM126A	-/-	-/-	7:22511204	7:22907176	exon	intron	deletion/read-through	downstream	upstream	0	0	2	5018	0	low	.	.	mismappers(1),mismatches(4)	...GAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAAT|...GGTTCGGGC	.	.	.
TALL065	TMEM182	AC007251.2(64320),AC108051.1(7366)	+/+	./+	2:102798000	2:102960042	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	2	15	2	low	.	.	.	GTtCCCCTTCATGAGAGGCGAGCACAACTCGACCTCCTATGACTCTGCAGTTA___TTTACCGTGGTTTCTGGtCAGTCCTGATGCTCCTGGGGGTAGTTGCTGTAGTCATCGCAAGCTTTTTGATCATCTGTGCAGCCCCCTTCGCCAGCCATTTTCTCTACAAAGCTGGGGGAGGCTCATATATTGCTGCAG...|...CAGTTCTGGAGGCTGGGAAGTCCAGATCAAGATGGCCGCAGGTTTGGTGTCTGCTGAGGGCTGCTTTCTGCTTCCAAGATGGTCCCTTGTTGCTTCGTCCTCCAGAAGAGAGCAACAC	.	.	.
TALL065	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	0	39	8	low	.	.	.	GGGATCCTGGTG___GTGGTCTACTACGTATTTGCCATCATTGGGATCAACTTGTTTAGAGGCGTCATTGTGGCTCTTCCTGGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGG...CAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAG	out-of-frame	NNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL065	SLC36A1	FAT2(33563),CTB-113P19.4(49768)	+/+	./+	5:151479461	5:151602507	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	2	57	2	low	.	.	.	ATAACCCTCAACCTGCCCAACTGCTG___GTTGTACCAGTCAGTTAAGCTGCTGTACTCCATCGGGATCTTTTTCACCTACGCACTCCAGTTCTACGTCCCGGCTGAGATCATCATCCCCTTCTTTGTGTCCCGAGCGCCCGAGCACTGTGAGTTAGTGGTGGACCTGTTT...|...GCATCAGGTGGCAGCTGGTGCCTCCCCAAAGGATGACTGGCGACTGTTAGCAGAAGGAGCAGAATGGATGCCAGACAGGTGAAATACAGGTGCCCACACCCTGAGGCTTTAGTGTAGAGTAGC	.	.	.
TALL065	HTRA4	ADAM9	+/+	+/+	8:38983048	8:39007886	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	3	10	low	.	.	.	AGCCTTAGTGAAGAATTGAAAATGCATTATCCAGATTTCCCTGATGTGAGTTCTGGGGTTTATGTATGTAAAGTGGTTGAAGGAACAGCTGCTCAAAG|GCTTTCAACAGACCTCACATCTTTCTTCTTATGAAATTATAACTCCTTGGAGATTAACTAGAGAAAGAAGAGAAGCCCCTAGGCCCTATTCAAAACAA___GTATCTTATGTTATTCAGGCTGAAGGAAAAGAGCATATTATTCACTTGGAAAGGAACAA___AGACCTTTTGCCTGAAGATTTTGTGGTTTATACTTACAACAAGGAAGGGACTTTAATCACTGACCATCCCAATATACAG___AATCATTGTCATTATCGGGGCTATGTGGAGGGAGTTCATAATTCATCCATTGCTCTTAGCGACTGTTTTGGACTCAG___AGGATTGCTGCATTTAGAGAATGCGAG	out-of-frame	SLSEELKMHYPDFPDVSSGVYVCKVVEGTAAQr|lstdltsffl*	.
TALL065	RAD9A	ZP3	+/+	+/+	11:67393009	7:76436454	exon	intron	translocation	downstream	upstream	0	0	2	20	3	low	.	.	.	GTGCAAGCCCAATCCATGCAAAACACAGGGAGGGCCATGGTAAAAGCATCACAGCGGGGACCTGAGAGGGTGGTGACGCTCAAGTTCGTCAAGAAAGGTAAGCACGTCTTTTGGCCGtGaGC...|...TGCAAACCTCTGAAGCAGAGGCTCATACGTCAGGGTGGCATTAAGGGACAAAGTAGAAACTTTTCAAAGATGACATCGATGCCACTTCACCTCCTCCAGCAGCTGCCTTGTGGGAAGAGAAAG	.	.	.
TALL065	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	28	103	low	.	.	mismatches(1)	CAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCC	out-of-frame	SPALEPMTTLLSYELAFKKQEEAWEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|gprelllcarpgpga*	.
TALL065	WDR4	DAZAP1	-/-	+/+	21:42850041	19:1428842	splice-site	splice-site	translocation	upstream	upstream	2	0	0	49	369	low	.	.	.	GGAACTGGGCCATGCTGGAAG___GCTCTGCCGGCGCAGACGCCAGCTTCAGCAGTCTCTACAAGGCCACGTTCGACAACGTGACCTCCTACCTGAAGAAGAAAGAGGAGAGACTGCAGCAGCAGCT...AGTCCCCCGCCTGGGCCCGACGGGCATGCCAAGAAGATGAGACCGGGGGAGGCGACGCTAAGTTGCTGATCGTGGCG|GTGGAAGTTAAACGAGCTGAGCCTCGGGACAGCAAGAGCCAAGCGCCG	out-of-frame	SPPPGPDGHAKKMRPGEATLSC*swr|wklnelslgtarakr	.
TALL065	AC024560.3	NFKBIZ	-/-	+/+	3:197613225	3:101859318	splice-site	splice-site	inversion	upstream	upstream	2	0	0	199	314	low	.	.	.	GGGTCCATCCATCACATAAGAGCAAAGAACACTGTTGTTGCCACAGG___AGTCAAGAAACTTTTCTTTTGAGCTATTGACAGCTTTTAACAAGTTATTATACTCCTATGAACAAAATTTGGAGCATAT...GAACCCATCGGGCAGCTACACATCTTGAAAGAGAAGCTCTTCCTGTGAG|ATCCGACGTATCCTGAAGGGAAAGTCCATTCAGCAGAGAGCTCCACCGTATTAGCTCCATTAGCTTGGAGCCTGGC	.	.	.
TALL066	TLX1NB	TRDC	-/-	+/+	10:101126960	14:22449941	splice-site	intron	translocation	upstream	upstream	32	38	20	326	328	high	.	.	duplicates(1)	GAAGGGATGTCTCTGCCCAACTGGAGAATCTCCTCAAGGGCTCAGCTGCGAAACACCTGTCACTCAACCAGGAGATTTACTCCAAATTTCAAGTCCAGCTTTTTAGAAAGTAGAAGACTGTCTACTCCCCAG___ATGAGAAAACCAAGGCACTGAAAGCTGGAAAGGGGCAGACCAGACGCAAACACTGCTTTCTTGACTCCACTCACTACAAGCTGCTTCCTTAAGCCTAAACTTGGCTCTTGCCTCACAGGACTATCTTGCAGGAACCTAG|ATGATTAACCATCTATGAACCGGCTGGGTAAGCAACAAGTGCCATCTTTCATGGAGCTGAGCCTTAAAGATCCTCCAGTCCTAAAGCTGACGGGAAGAAGGTAGGTGGGAGCAGCGCTGAGGTTTTTGGAACGTCCTCAAGTGCTGTGACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAACCAA___GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAAT...___TGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAG	.	.	.
TALL066	TLX1NB	TRDC	-/-	+/+	10:101126960	14:22462932	splice-site	splice-site	translocation	upstream	upstream	17	10	7	326	3580	high	.	.	duplicates(1),inconsistently_clipped(1)	GAGACCAAGACTCGGAGTAGTTCATGAAGAGAGAGAAGAGGGGAACAAGGCGAGGCTTAAAAGGAAAAGGGAAAACAGGAAGCGACCATTCCCAGAGACGGACAGACAGACAAACCCAAGGAGGGTGAAGTCAACTGTCTTCCCGGCCTGTTGGGAGCCCTCCCCTCACTTTGAACTGGGCCAAAGGAGTCCAGCCCACAAGGCGTCTGAGGAAGGGATGTCTCTGCCCAAC...CTCAGCTGCGAAACAgCTGTCACTCAACCAGGAGATTTACTCCAAATTTCAAGTCCAGCTTTTTAGAAAGTAGAAGACTGTCTACTCCCCAG___ATGAGAAAACCAAGGCACTGAAAGCTGGAAAGGGGCAGACCAGACGCAAACACTGCTTTCTTGACTCCACTCACTACAAGCTGCTTCCTTAAGCCTAAACTTGGCTCTTGCCTCACAGGACTATCTTGCAGGAACCTAG|___...GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAACACGACAATAAAACTGTGCACTCCACTGACTTTGAAGTGAAGACAGATTCTACAG___ATCACGTAAAACCAAAGGAAACTGAAAACACAAAGCAAC...TGACTGCCAAGTTATTTTTCTTGTAAG___GCTGACTGGCATGAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGGCTTCTGACTTCTTTGTGATTCAAGTTGACCTGTCATAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCCAGCTCATCCTCCAGCTTGATGGGAAGACAAAAG	.	.	.
TALL066	TRDC	TLX1NB	+/+	-/+	14:22450139	10:101128944	splice-site	intron	translocation/5'-5'	downstream	upstream	2	0	0	358	285	low	.	.	.	AGGAAATATGGTCCTCCATACTCCTCAGACAACAGCCTTCCGAAAGCAAACCTGTCCCTACCTGCAGATGATTAACCATCTATGAACCGGCTGGGTAAGCAACAAGTGCCATCTTTCATGGAGCTGAGCCTTAAAGATCCTCCAGTCCTAAAGCTGACGGGAAGAAGGTAGGTGGGAGCAGCGCTGAGGTTTTTGGAACGTCCTCAAGTGCTGTGACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAACCAA|TTCCCTCAAGATAAGAGGCAGGAAGAGATTCATTCGGGTTCAGACAACTTCCAAA	out-of-frame	eiwssillrqqpseskpvptcr*ltiyepag*atsaifhgaep*rssspkadgkkvggssaevfgtssSAVTPINSSLEKEPV*LWNQ|fpqdkrqeeihsgsdnfq	.
TALL066	TLX1NB	TRDC	-/-	+/+	10:101126960	14:22465533	splice-site	splice-site	translocation	upstream	upstream	0	1	0	326	4706	low	.	.	.	CTTCCTTAAGCCTAAACTTGGCTCTTGCCTCACAGGACTATCTTGCAGGAACCTAG|GCTGACTGGCATGAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGGCT...GATTCAAGTTGACCTGTCATAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCCAGgTCATCCTCCAGCTTGATGGGAAGACAAAAGTCCTGGGGAAGGGGG	.	.	.
TALL066	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	30	22	2	136	133	high	.	.	duplicates(3),low_entropy(6),mismappers(2),mismatches(9)	GCGGGCAGGGCGCACCGCGCAGGGACGCCCCGGCTGCTCCGTGCCGCCCCGCAGAATCCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCG	.	.	.
TALL066	TLX1NB	AE000661.37	-/-	-/+	10:101126960	14:22449941	splice-site	intron	translocation/5'-5'	upstream	upstream	31	13	7	326	328	high	.	.	.	GAAGGGATGTCTCTGCCCAACTGGAGAATCTCCTCAAGGGCTCAGCTGCGAAACACCTGTCACTCAACCAGGAGATTTACTCCAAATTTCAAGTCCAGCTTTTTAGAAAGTAGAAGACTGTCTACTCCCCAG___ATGAGAAAACCAAGGCACTGAAAGCTGGAAAGGGGCAGACCAGACGCAAACACTGCTTTCTTGACTCCACTCACTACAAGCTGCTTCCTTAAGCCTAAACTTGGCTCTTGCCTCACAGGACTATCTTGCAGGAACCTAG|ATGATTAACCATCTATGAACCGGCTGGGTAAGCAACAAGTGCCATCTTTCATGGAGCTGAGCCTTAAAGATCCTCCAGTCCTAAAGCTGACGGGAAGAAGGTAGGTGGGAGCAGCGCTGAGGTTTTTG...___TGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAG	.	.	.
TALL066	TLX1NB	TRAC	-/-	+/+	10:101126960	14:22449941	splice-site	intron	translocation	upstream	upstream	31	12	3	326	328	high	.	.	.	GAAGGGATGTCTCTGCCCAACTGGAGAATCTCCTCAAGGGCTCAGCTGCGAAACACCTGTCACTCAACCAGGAGATTTACTCCAAATTTCAAGTCCAGCTTTTTAGAAAGTAGAAGACTGTCTACTCCCCAG___ATGAGAAAACCAAGGCACTGAAAGCTGGAAAGGGGCAGACCAGACGCAAACACTGCTTTCTTGACTCCACTCACTACAAGCTGCTTCCTTAAGCCTAAACTTGGCTCTTGCCTCACAGGACTATCTTGCAGGAACCTAG|ATGATTAACCATCTATGAACCGGCTGGGTAAGCAACAAGTGCCATCTTTCATGGAGCTGAGCCTTAAAGATCCTCCAGTCCTAAAGCTGACGGGAAGAAGGTAGGTGGGAGCAGCGCTGAGGTTTTTGGAA	.	.	.
TALL066	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	12	11	4	61	133	high	.	.	low_entropy(1),mismappers(2),mismatches(3)	TTACTATGGTGCAGCCGGGGCTTGCAGAATCCCA___...TCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGT...___...TTTTTT?GTCGCTCTCGGGATCGCTCTTCTGCCTTT?TTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAAC	.	.	.
TALL066	PRPF4B	RP3-400B16.1(1768),RP3-400B16.3(27471)	+/+	./+	6:4052873	6:4159153	splice-site	intergenic	deletion/read-through	downstream	upstream	12	9	1	245	76	high	.	.	mismappers(2),mismatches(5)	CCTAGATAAACGTTACAATGTGTATGGCTACACTGGGCAAGGTGTATTCAGTAATGTTGTACGAGCCAGAGATAATGCAAGAGCCAACCAAGAAGTGGCTGTAAAGATCATCAGAAACAATGAGCTCAT___GC...ACAAATTTCATTGTCTGAGACTCTTCAGGCACTTCTATCACAAGCAGCATCTTTGTCTGGTATTCGAGCCTCTCAG___CATGAACTTACGAGAGGTGTTAAAAAAATATGGTAAAGATGTTGGTCTTCATATTAAAGCTGTAAGATCCTATAGTCAGCAGTTGTTCCTGGCATTGAAACTCCTTAAAAGATGCAATATCCTACATGCAGATATCAAGCCAGACAATATCCTG|GGAACATTTCTCTCCACCATCCTGTGCCACACTGTGGGGGTGTCAGTAACACCCTCTGTCCTCTCCTGGCCAAAGGAAAGGGGTGTCATTCAGCCCAGGCCCCTGGATCCTCATCTcGGGATTTGGAAATGTGACCGAAGTGACAT-AAAgAAAGACATGAAGTGCGAGGAGCTCATTCAGTCAGCTCTGCAGCTCCAGCTGGG...CCATCTTGCCTGAGTTCGTCAGAGCCAGATTCTGTGCTGTAATAAAAAA[a]CCCCAAATCAACTCACCTCTCACCCTCCACAATGCAGCTTCTGGAAGATTCCAGATGCCCCAGCCTGACTGAGA	out-of-frame	KFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNIL|gtflstilchtvgvsvtpsvlswpkergviqprpldphlgiwkcdrsdikkdmkceeliqsalqlql	.
TALL066	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	14	8	0	45	31	high	.	.	duplicates(1),low_entropy(1),mismatches(2)	CCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGT	out-of-frame	TIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqka	.
TALL066	TLX1NB	TRDJ1	-/-	+/+	10:101126960	14:22449941	splice-site	intron	translocation	upstream	upstream	0	10	4	326	328	high	.	.	.	CCTCAAGGGCTCAGCTGCGAAACACCTGTCACTCAACCAGGAGATTTACTCCAAATTTCAAGTCCAGCTTTTTAGAAAGTAGAAGACTGTCTACTCCCCAG___ATGAGAAAACCAAGGCACTGAAAGCTGGAAAGGGGCAGACCAGACGCAAACACTGCTTTCTTGACTCCACTCACTACAAGCTGCTTCCTTAAGCCTAAACTTGGCTCTTGCCTCACAGGACTATCTTGCAGGAACCTAG|ATGATTAACCATCTATGAACCGGCTGGGTAAGCAACAAGTGCCATCTTTCATGGAGCTGAGCCTTAAAGATCCTCCAGTCCTAAAGCTGACGGGAAGAAGGTAGGTGGGAGCAGCGCTGAGGTTTTTGGAACGTCCTCAAGTGCTGTGACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAACCAA___GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTAC	.	.	.
TALL066	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	5	5	0	132	172	high	.	.	mismatches(3)	GGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGG	.	.	.
TALL066	SFSWAP	NOC4L	+/+	+/+	12:131711447	12:132150981	splice-site	splice-site	deletion	downstream	upstream	2	1	0	249	167	high	.	.	duplicates(1),mismatches(3)	CGCGAGCGGGGGCCGCGCCAAACCCGAGAGGAAAAGCGGCGCGAAGGAGGAGGCCGGGCCAGGCGGTGCCGGCGGTGGGGGCAGCCGAGTGGAGCTCTTGGTTTTCGGCTATGCCTGCAAGCTGTTCCGGGACGACGAGCGGGCCCTGGCTCAGGAACAGGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACAG|GGGGGGCCCTCAGCCTCTTGGCCTTGAACGGGCTGTTCATCTTGATTCACAAACACAACCT___GGAGTACCCTGACTTCTACCGGA...GTGAGTACCAGGGCACCTGGCTCTGCCCTGCTCTGTGCGGCTGCAGCCTGGGGCCAGGGGAGGGTGGTGGGGGCTAGCAGTCCGGGCCCTGTCTCACAACCACTGCCCTGCCCAGCCACCTCCCC	out-of-frame	ASGGRAKPERKSGAKEEAGPGGAGGGGSRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDr|ggpqplgleravhldsqtqpgvp*	.
TALL066	BZRAP1-AS1	RPS9	+/+	+/+	17:58337679	19:54201160	splice-site	splice-site	translocation	downstream	upstream	3	12	2	160	17672	medium	.	.	.	CAAAGAGCTATCTATTTCCTCCTGCCAGCCTCCTGCCCCCAACAGGATTCCTCACATCCCAGGACCAGCTGGAAAAGGTGGTGAGAGTTGGAAAGAGACTGCTCAGTGAGGACTGCCCTGCGAACCAGCTTGGATTCATCCCGTTCACCTCCACGTTCTGCACTCGGGGCCGAGGGAAGGGAGGCAGCCCAGGCAGCTAGAGAACTTGATGAAACACACTCAATCTGAATCTCGCTTGATCGTCATGCTGACCCAGTGAG|GCGCAGACGGGGAAGCGGAGCCAACATGCCAGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTATGTGACCCCGCGGAGACCCTTCGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCG___GCGAGTATGGGCTCCGGAACAAACGTGAGGTCTGGAGGGTCAAATTTACCCTGGCCAAGATCCGCAAGGCCGCCCGGGAACTGCTGACGCTTGATGAGAAGGACCCACGGCGTCTGTTCGAAG___GCAACGCCCTGCTGCG...AGCTGGGCTTGGCCAAGTCCATCCACCACGCTCGCGTGCTGATCCGCCAGCGCCATATCAG___GGTCCGCAAGCAGGTGGTGAACATCCCGTCCTTCATTGTCCGCCTGGATTCCCAGAAGCACA	.	.	.
TALL066	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	6	10	0	51	24	medium	.	.	mismatches(2)	CCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTTTCGCGGTCCGGGTCCCTGCGGCGGACGGGTCGGATCGTGCTCGTGGCCAGGGCGCAGTCAGGTGTCGCGTGGTCCTGATCTAGGAAGAGACTGCGGCCTTATCACCGTCTCGGTGTCTGCTTTCACCTTCAACTGCCCCCCTCCTCACCTGGACCGCTCACCCTCCTCC---CCTCTCACCCCGCCATCCCCACCAGTCCCCACCTGTCTCTGTA...GTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAA	.	.	.
TALL066	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	6	8	1	188	567	medium	.	.	duplicates(2),mismatches(2)	CGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTAC...___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL066	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	14	567	low	.	.	read_through(10)	AGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAA	out-of-frame	KTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL066	PRPF4B	RP3-400B16.1	+/+	+/+	6:4052873	6:4154841	splice-site	splice-site	deletion/read-through	downstream	upstream	3	9	2	245	42	medium	.	.	low_entropy(1)	CTTCAGGCACTTCTATCACAAGCAGCATCTTTGTCTGGTATTCGAGCCTCTCAG___CATGAACTTACGAGAGGTGTTAAAAAAATATGGTAAAGATGTTGGTCTTCATATTAAAGCTGTAAGATCCTATAGTCAGCAGTTGTTCCTGGCATTGAAACTCCTTAAAAGATGCAATATCCTACATGCAGATATCAAGCCAGACAATATCCTG|GTCAAACGGTGTAAACTTTGCTGGAAGGAACCTTACTCAGAGGGCCAATCACCTGCTTCTCTAGAGTTCTCAAGCTCTCCTGTGAGCACCAGGTTGAGCTGCAGAAAGCCAGAACCAGCTCAGAAACTGAGAAATGGACATGAAGATGCCCAG___GAAACATCTCTACAGCATCCCTAACTGGGGGTTGATCCATT...___GGAACATTTCTCTCCAC	out-of-frame	FRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNIL|vkrcklcwkepysegqspaslefssspvstrlscrkpepaqklrnghedaqetslqhp*	.
TALL066	PRPF4B	ECI2	+/+	-/+	6:4052873	6:4135412	splice-site	5'UTR	deletion/read-through/5'-5'	downstream	upstream	5	8	0	245	22	medium	.	.	low_entropy(1)	GCAAGAGCCAACCAAGAAGTGGCTGTAAAGATCATCAGAAACAATGAGCTCAT___GCAAAAGACTGGTTTAAAAGAATTAGAGTTCTTGAAAAAACTTAATGATGCTGATCCTGATGACAAATTTCATTGTCTGAGACTCTTCAGGCACTTCTATCACAAGCAGCATCTTTGTCTGGTATTCGAGCCTCTCAG___CATGAACTTACGAGAGGTGTTAAAAAAATATGGTAAAGATGTTGGTCTTCATATTAAAGCTGTAAGATCCTATAGTCAGCAGTTGTTCCTGGCATTGAAACTCCTTAAAAGATGCAATATCCTACATGCAGATATCAAGCCAGACAATATCCTG|ACAATAGGGAAGGAGGGTCTTCCAACGGCGGCGACCTTCGCCTGGACAGCGGTATCCTGCGGGCGACCATGGGCCGAACGGCCGGGACTCCAAGCTTACCTCGGACACGAACGCCGCGCCAGTCTCCAAGCCAA___GCTATACAAGAAGAAGCATGGCACCAGCATCTGCTTCTGGTGAGCAGCTCAGGCTGCTTCCATTCCTG...GTCAAACGGTGTAAACTTTGCTGGAAGGAACCTTACTCAGAG	out-of-frame	ARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNIL|tigkeglptaatfawtavscgrpwaerpglqaylgherraslqaklykkkhgtsicfw*	.
TALL066	NNT	GHR	+/+	+/+	5:43603294	5:42565864	splice-site	splice-site	duplication	downstream	upstream	0	7	0	123	27	medium	.	.	.	GCCGCGGGGCCCAAGCCCGGGTCTGCCAGCGCGACGTCCTCTCGCGGCCCTCAGGGCACAGCCCAAGGCTGTCAGCCTCCCGGCCCAG|GTCCTACAGGTATGGATCTCTGGCAGCTGCTGTTGACCTTGGCACTGGCAGGATCAAGTGATGCTTTTTCTGGAAGTGAGG___CCACAGCAGCTATCCTTAGCAGAGCACCCTGGAGTCTGCAAAGTGTTAATCCAGGCCTAAAGACAA___ATTCTTCTAAGGAGCCTAAATTCACCAAGTGCCGTTCACCTGAGCGAGAGACTTTTTCATGCCACTGGACAGATGAGGTTCATCATGGTACAAAGAACCTAGGACCCATACAGCTGTTCTATACCAGAAG___GAACACTCAAGAATGGACTCAAGAATGGAAAGAATGCCCT	.	.	.
TALL066	NNT	GHR	+/+	+/+	5:43602890	5:42565864	splice-site	splice-site	duplication	downstream	upstream	0	0	0	73	27	low	.	.	mismatches(1)	ATTACCTGTTTCTTTGTTCTGATGGGACCCCAGAGAGtACATCACGCTTTGTAACTGGTTCTTCAAGGGGAGAAGCAAATGTGTCCCTGAAAACTTCAGCTGCCGCGTTTGGCACCAG|GTCCTACAGGTATGGATCTCTG	.	.	.
TALL066	PRPF4B	RP3-400B16.4	+/+	+/+	6:4052873	6:4145537	splice-site	splice-site	deletion/read-through	downstream	upstream	2	5	0	245	27	medium	.	.	.	AATTTCATTGTCTGAGACTCTTCAGGCACTTCTATCACAAGCAGCATCTTTGTCTGGTATTCGAGCCTCTCAG___CATGAACTTACGAGAGGTGTTAAAAAAATATGGTAAAGATGTTGGTCTTCATATTAAAGCTGTAAGATCCTATAGTCAGCAGTTGTTCCTGGCATTGAAACTCCTTAAAAGATGCAATATCCTACATGCAGATATCAAGCCAGACAATATCCTG|GCTATACAAGAAGAAGCATGGCACCAGCATCTGCTTCTGGTGAGCAGCTCAGGCTGCTTCCATTCCTGGTGGAAGGGAAAGGGGAGCTGACTTGTGCAGAGATCACTTCCAAGAGGGAAATCAAGAGAGAGAG___GTCAAACGGTGTAAACTTTGCTGGAAGGAACCTTACTCAGAGGGCC	out-of-frame	FHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNIL|aiqeeawhqhlllvsssgcfhswwkgkgs*	.
TALL066	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	5	1	0	397	23	medium	.	.	mismatches(1)	ACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTG...GAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGG	.	.	.
TALL066	ITM2C	PTMA	+/+	+/+	2:230865145	2:231711348	splice-site	splice-site	deletion	downstream	upstream	2	4	0	1128	31631	medium	.	.	low_entropy(1),mismatches(6)	GGACGCGCGGtCCGGCGCAGCCATGGTGAAGATTAGCTTCCAGCCCGCCGTGGCTGGCATCAAGGGCGACAAGGCTGACAAGGCGTCGGCGTCGGCCCCTGCGCCGGCCTCGGCCACCGAGATCCTGCTGACGCCGGCTAGG|GACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCT___AATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGA...___GTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAG___GATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAG	in-frame	MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR|DLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEE	.
TALL066	NNT	SERBP1P6	+/+	-/+	5:43603294	5:42468777	splice-site	exon	duplication/5'-5'	downstream	upstream	0	4	0	123	6	medium	.	.	.	GGTTGGAGGCGCAGCGCCGCGGGGCCCAAGCCCGGGTCTGCCAGCGCGACGTCCTCTCGCGGCCCTCAGGGCACAGCCCAAGGCTGTCAGCCTCCCGGCCCAG|CACCTCGAAGGGGTCCGATTAGTTGTCAAATAACTGGTCGAATCGGTTGGTGACCAGGCAGCTGAAGCCTTCCTGTAACTGCCCAGGCATGATGGTTGCTCGGCGGCACATTCCTCCACGGATTGCAGCGGGCTGCGCCGAGCCAAGAGCGCGTGCTTCAGCTCTTCCCAGAAG	.	.	.
TALL066	SLC4A4	SLC4A4	+/-	+/+	4:71188342	4:71187343	intron	5'UTR	inversion/3'-3'	upstream	upstream	1	1	0	132	94	medium	.	.	.	GTGTTCTTGATTTCTCATTAGGAGCAACTTTCCAGGGCACTGAAGCGAACCAGGAAAAGAAATGGGGAGGGTAAGCCAAAGGGGTCGCTGCTCTTCAGTGTCAAGTTGGAAAGAGCTTGCTGCGATCAATTATGCTGAGAAGGTAGGGCC|GCTGCAGCCCCACACTCCGCCGCCAAACTGGAGGAGCGACGGAAGCCAGACCCCAGGAG___GCCCTACCTTCTCAGCATAATTGATCGCAGCAAGCTCTTTCCAACTTGACACTGAAGAGCAGCGACCCCTTT	.	.	.
TALL066	SIPA1L3	ZNRF1	+/+	+/+	19:38029156	16:75093572	splice-site	splice-site	translocation	downstream	upstream	0	2	0	10	467	medium	.	.	.	AGATGCACAGTCTCTGACATCAGCTCTCCTGGGACCCTCCAAGAGCACTAGTGTCTAGAAGGCACTAAGG|GTTTCAAGTGCCCCATTTGCTCCAAGTCTGTGGCTTCTGACGAGATGGAAATGCACTTTATAATGTGTTTGAGCAAACCTCGCCTCTCCTACAACG___ATGATGTGCTGACTAAAGA	.	.	.
TALL066	RP11-554D15.1	EEF1A1	+/-	-/-	6:74234129	6:73519473	intron	CDS	deletion/3'-3'	upstream	downstream	0	0	17	0	65535	low	.	.	duplicates(220),inconsistently_clipped(3),low_entropy(56),mismappers(9),mismatches(55)	GGCTgACTTGGATATAC|TGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGGACATCTCAG___GCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGA	.	.	.
TALL066	RP11-404O13.5(1073),CD1A(49187)	CD1C	./+	+/+	1:158204950	1:158291134	intergenic	splice-site	deletion/read-through	downstream	upstream	2	6	0	17	217	low	.	.	mismatches(1)	GCAAGATCTTCATTGCTCATCAGAGGATTCCGGCGAG___GGTCTCGCTCTGTGCAGTGGTGTGATCTTGGCTCACTTTAGCCTCAACCTCCCGAGTAGCTGGGATTACAG|CATCCCAGGAACACGTCTCCTTCCATGTCATCCAGATCTTCTCATTTGTCAACCAATCCTGGGCACGAGGTCAGGGCTCAGGATGGCTGGACGAGTTGCAGACTCATGGCTGGGACAGTGAATCAGGCACAATAATTTTCCTGCATAACTGGTCCAAGGGCAACTTCAGCAATGAAGAGTTGTCAGACCTAGAGTcGTT	.	.	.
TALL066	Y_RNA(4459),RP11-973H7.1(9374)	CEP76	./-	-/-	18:12765277	18:12701113	intergenic	splice-site	deletion/read-through	upstream	downstream	2	4	0	360	192	low	.	.	mismatches(1)	CTAAACTCcGCATCTGGAGAGGGTGGTTTCCTGATTCgCaGACAAcGTCTCCTCCCTGTGTCCTCACATGGCCTCTACTCTGTGCGCACCTGGAGAGAGAGCGCCC?GTCCCTCCCTCTTCTGATGAGGTCACCAGCCCTATCAG|ATGGATGTCCATGGTAGAATAAGAGAAATCCTTGCTGAGACTATACGGGAAGAATTGGCACCTGATCAACAGCATTTATCAACAGAAGATTTGATCAAAGCCCTTAGACGTCGAGGAATCATTGACGATGTGATGAAAGAACTTAATTTTGTTACT___GACAGTGTTGAGCAAGAACTCCCTTCCTCTCCAA	.	.	.
TALL066	NLGN4X	NLGN4X(14586),RP11-459A10.3(137706)	-/.	./.	X:6226661	X:6243449	exon	intergenic	deletion/read-through	downstream	upstream	2	3	1	18	22	low	.	.	low_entropy(1),mismatches(2)	.	.	.	.
TALL066	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511874	7:23335401	exon	intron	deletion	downstream	upstream	0	0	6	594	0	low	.	.	low_entropy(3),mismappers(1),mismatches(12)	.	.	.	.
TALL066	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	2	4	0	30	129	low	.	.	inconsistently_clipped(1),mismatches(2)	ACTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGtAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAA	.	.	.
TALL066	INADL	INADL(12711),PIGPP2(12500)	+/.	./.	1:62138079	1:62176631	intron	intergenic	deletion/read-through	downstream	upstream	0	4	1	73	141	low	.	.	duplicates(1),mismappers(12),mismatches(10)	.	.	.	.
TALL066	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	3	2	0	90	9	low	.	.	low_entropy(1),mismatches(2)	CAAACATGCAAGCCCTGCCCCAGCTTTTCTCCCAACACTCAGCTCTTCTCCCAACAgAAGAGCTTTTGGAGGTCACTTCTGGGGCCTTTGCTAAGCAGGCCACTCCTTGCTTCTCCTGCAGAC...GCAATGACCAATGGAACAATGATGAAACATCCATTTTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAACTGTGAGACATGCACTTGCTACGAAACAGAAATTTCATGTTGCACCCT___TGTTTCTACACCTGTGGGTTATGACAAAG	.	.	.
TALL066	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	4	0	116	28	low	.	.	duplicates(1),low_entropy(2),mismatches(3)	GCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAG	.	.	.
TALL066	ZBTB20	TIGIT	-/-	+/-	3:114350274	3:114301564	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	1	3	0	9	5	low	.	.	duplicates(1)	CTGGCCTCATCCGCAGGCCACAGCACAGCCAGTGGGCAAGGCGAAAAAAAGCCTTATGAGTGCACTCTCTGCAACAAGACTTTCACCGCCAAACAGAACTACGTCAAGCACATGTTCGTACACACAG|ACCATCAGGACACTGCTAACAGCAGAGAACCTGTTCACCAACCACCATAGCAGCTCCCTTCCCAGCTAAGAGATCAACTTTCATCTTCTTCACCTCCCCCCTCTATTCAATCATTT	out-of-frame	LASSAGHSTASGQGEKKPYECTLCNKTFTAKQNYVKHMFVHT|dhqdtansrepvhqpp*	.
TALL066	AC021224.1	CCDC178	+/+	-/+	18:32413122	18:32991543	exon	intron	deletion/5'-5'	downstream	upstream	0	0	4	314	0	low	.	.	.	CAAACCCAAAGCCCCTGGAGCGCTTGGTGTTTGGATCTCTCATTACCACACAGTCCGTGAGCGTTCCCCATTGCTCAAAATGGCTCCTCAGGCTCTCATCAGTTGTTTCAAAGCTCAACCCTCC...|...GGTAGTTTTAT	.	.	.
TALL066	RORC	AL450992.2	-/+	+/+	1:151826445	1:151850233	intron	splice-site	deletion/read-through/3'-3'	downstream	upstream	3	1	0	20	21	low	.	.	mismappers(1)	GGGAGCCAGAATGGAGCTCACACGAGCCTGAAGCCAAATTTCTACTCCTCCTACCCCCGAGGACCTTCCAAGCCTGACCCTCTTTGCCAGGTGACTTCAGGGACAGGGATGTTTTCAGAG|GAGCTCCAGCACCACCTCCAGCCTTCAGTGACTGTCTGGAGCAGGCATCCGGATGGAAGAGAAGGGGGACAACCATGAACTTGGTGACCCACG___AAACAGAGTCTCG	.	.	.
TALL066	NTNG2	EEF1A1P5	+/.	+/.	9:132236527	9:133019907	intron	exon	deletion	downstream	upstream	0	0	4	24	48617	low	.	.	low_entropy(5),mismappers(2),mismatches(6)	.	.	.	.
TALL066	EEF1A1P6	FAM126A	-/.	-/.	7:22511845	7:22961573	exon	intron	deletion	downstream	upstream	0	0	4	1166	0	low	.	.	mismatches(6)	.	.	.	.
TALL066	LZTFL1	SLC6A20	-/-	-/-	3:45826249	3:45791731	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	4	853	1	low	.	.	mismappers(1)	AGCAGCTTATCGAAACATGAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGGCATGTA...|...CAGTCATGTAAGACGTGCCTACTTCCCCTTCACCTTCTTCCAAAATTGCAAGTTTCCTGAGGCCTCCCCAGCCA	.	.	.
TALL066	C9orf171	EEF1A1P5	+/.	+/.	9:132568283	9:133020506	intron	exon	deletion	downstream	upstream	0	0	4	1	2549	low	.	.	low_entropy(2),mismatches(9)	.	.	.	.
TALL066	VEGFC(53785),RP11-624A4.1(20102)	VEGFC	./-	-/-	4:176846512	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	30	33	low	.	.	.	CTCCAAACTTTCTGAAGATACTG___GTTACAGGTCAAACTCAGCATTCAACGGAACCATTTGC___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG___AAGTCTCCCTTTGATTTTATAAACTGACACATCTGCTTCTTCCAGCTTACAGAACTCTGAAG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAA	.	.	.
TALL066	SCARB1	RP11-83B20.10(67448),RP11-13J12.2(19632)	-/-	./-	12:124786107	12:124705892	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	3	9	1	low	.	.	.	GGTCACTGCTGGGGGCTGCGCAGCACGCTTGCGTCTTTTGCATGCCGCGTTGCCACTACTCTGCCTGTTCTGGAAGGCCTGGGACCCTCCCTTGGAGGGGGCACAG...|...CACAGCCTGTCAGAGCACAGGAGCCTGGAGGGCCATTGAAGAGGAGAGGAGCCTGTACGCCCTGTTTCAAGAACCTGAGAGCTGGGCTCAGAAACGGGCAGCGGCTGGACCAAGGTCACACAGCAAGTTGGTTGCTCAGCCAGAGTCAGCACAGGGCGGGGTGAACTCCAAAGCCCCGGGGCCCCAGTGAGGGGGTAGCATGAGC	.	.	.
TALL066	SLC22A16	CTA-331P3.1(26029),RP11-346C16.4(56710)	-/.	./.	6:110475993	6:110505465	5'UTR	intergenic	deletion/read-through	downstream	upstream	2	0	1	57	34	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL066	LRRC34	RP11-362K14.5	-/-	-/-	3:169796214	3:169778477	splice-site	exon	deletion/read-through	upstream	downstream	1	1	1	61	6	low	.	.	.	TTTTGCTGCAATGCTGCAAATTAATTCATCATTAGAGAAATTAGATCTGGGTGACTGTGATCTG___AATAGAAAATGCAGGCGCAAACTATCTCAGTGAAACTCTTACTTCACACAACAGGAGTCTTAAAGC|AACACAAAAATAGCTGATGGTAACTCACTACCTCCTCCATTCATCCTGAGGCTTCTTCAGATAGCAACCAACTTTTCTGGATTGGCAAGAGGGAAAGTCTAATGACACTTGTTTCCTACTATTTTCTCCTGCTCCCCTGTGAGGGACTTTAATTATGTTTCCCAAACTTTGCTGTGCATGTGAATC	out-of-frame	FAAMLQINSSLEKLDLGDCDLNRKCRRKLSQ*NSYFTQQES*S|ntkiadgnslpppfilrllqiatnfsglargkv*	.
TALL066	PEAK1	TSPAN3	-/-	-/-	15:77133005	15:77055863	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	1	14	631	low	.	.	low_entropy(5),mismatches(1)	GGACAGCTGGTCAGACTTCAGGCTAACCAGTGACAAACCATGTTGTGAGGCAGGTGATGCGGTTTACTATACTGCTTCATATGCAAAAGATCCACTTAATAACTATGCAGTCAAG|TTTGTCATCATCCTGCTCTTGGTTTTTGTCACAGAAGTTGTTGTAGTGGTTTTGGGATATGTTTACAGAGCAAAG___GTGGAAAATGAGGTTGATCGCAGCATTCAGAAAGTGTATAAGACCTACAATGGAACCAACCCTGATGCTGCTAGCCGGGCTATTGATTATGTACAGAGACAG___CTGCATTGTTGTGGAATTCACAACTACTCAGACTGGGAAAATACAGATTGGTTCAAAGAAACCAAAAACCAGAGTGTCCCT	in-frame	DSWSDFRLTSDKPCCEAGDAVYYTASYAKDPLNNYAVK|FVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSV	.
TALL066	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	2	1	0	6	4	low	.	.	.	CCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTtGACGGAAGCAGCA	out-of-frame	RTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkltea	.
TALL066	HNRNPA1P7	CCDC178	-/.	-/.	18:32413122	18:32991543	exon	intron	deletion	downstream	upstream	0	0	3	314	0	low	.	.	mismatches(3)	.	.	.	.
TALL066	CTD-2231H16.1	PLEKHG4B	+/+	+/+	5:113448	5:154875	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	140	169	low	.	.	.	GCGGCCCAGGCGCCCGG___GATCTGGAATCTCTTGATGCCTGTATCCAGAGGACGCTCTCTGCCTTGTACCCACCGTTTGAAGCCACGGCAGCCACGGTGCTCTGGCAGCTGTTCAGCGTGGCCGAGAGGTGCCACGGTGGGGACGGGCTGCACTGCCTCACCAGCTTCCTCCTCCCAGCCAAGAGGGCCCTGCAGCACCTGCAGCAGGAAGCCTGT|TGTGAGGTCGTGAGCTCCCTGAAGGCCGTGCACAAATTTGTTGACAGCTGCCAGCT...CGCTGCAAACTGTGAAGAAGCCATCATTTTCCTACAGAATTCATTCTGCTCCCTGAACACCCACAGAACCCCAAGAACAGCCCAG___GAAGTCGCCGAGTTAATTGACCAGCATGAGACGATGATGA	.	.	.
TALL066	CTD-2231H16.1	PLEKHG4B	+/+	+/+	5:113448	5:143047	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	140	169	low	.	.	read_through(1)	CACTGCCTCACCAGCTTCCTCCTCCCAGCCAAGAGGGCCCTGCAGCACCTGCAGCAGGAAGCCTGT|ACGTTCTTGCATCCTCAGCCTGTGTCAGCACAGACGGCGGCAGCCTCCATTGCCACAACCCCAGCGGGCCTTCCGATGTGCCTGCCCGGCAGCCACACCCCGAGCAAGAAGGGTGGCCACCCGGCACAGGAGACTTCCCCAGCCAGGTGCCCAAG	.	.	.
TALL066	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	1	66	339	low	.	.	.	CTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTG	out-of-frame	LTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL066	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100058666	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	66	320	low	.	.	.	TGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTATTACATGAAACCTTTCCTAAACATACATTTCTG	out-of-frame	WIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|yymkpflnihf	.
TALL066	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	357	16	low	.	.	mismatches(2)	CAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAG	out-of-frame	KALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswss	.
TALL066	CPA4	CPA5	+/+	+/+	7:130312122	7:130346393	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	357	18	low	.	.	.	C___GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|GCTGGGCTTTCCAGCCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCAC	out-of-frame	DKVARLAAKALASVSGTEYQVGPTCTTV|cwafqplgavls*	.
TALL066	CPA4	CPA5	+/+	+/+	7:130312122	7:130361143	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	357	23	low	.	.	duplicates(1)	AAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|ATATATAGCTGGATTGACAACTTTGTAATGGAGCATTCCGATATTGTCTCAAAAATTCAGATTGGCAACAGCTTTGAA	out-of-frame	ALASVSGTEYQVGPTCTTV|yi*	.
TALL066	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121447	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	4	4	low	.	.	mismappers(1)	GGGAGCTGGACCAG___AAAATTCTTGCTGCTGTATTGAGAACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|ATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCTGTCTGGAACCGCTTCC	.	.	.
TALL066	SH3D19	LRBA	-/-	-/-	4:151102951	4:150795240	exon	intron	deletion/read-through	upstream	downstream	0	0	2	52276	0	low	.	.	low_entropy(1),mismappers(1),mismatches(3)	TGACCACTTCTTTCAAGTCATTTGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTCCGGATTTGGCGGACCTGTTGGTcCTGAGCATAAGAGGTCTTCCGTATCTGATTGTTGCGT...|...ACTCCAGCATT	.	.	.
TALL066	STK17B	ANKRD44	-/.	-/.	2:196170708	2:197031940	intron	intron	deletion	downstream	upstream	0	0	2	70	1	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL066	HP1BP3	EIF4G3	-/-	-/-	1:20744627	1:20898621	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	1169	0	low	.	.	low_entropy(4),mismappers(2),mismatches(3)	...GCTTTTATTGGTGCCTGCCCTTTTCCTTGTTCATTTTAATTTCTGCAATAATCCTGGACTTTCCTAAACTATGTAATGTATACTTGTCCTTTTTCTCTGCCTCCCCCAACCCCCTGTTGTTTTTATGGTCAGCTTTGCCTTTTTTTTTTCTTCCAATTTTATCTAAACAGTTGCAGAGATTTTTATATTTGTAGAAAGCATCAAGAACGGTATGCCAGTCAGGTCCTGGAAGTAAAATGGAGGCACAATATAGCACTGACTGAGTTGTAAAGCCTCC|...TTGATCTAGAT	.	.	.
TALL066	ARHGEF10	KBTBD11	+/+	+/+	8:1952827	8:2006545	splice-site	3'UTR	deletion/read-through	downstream	upstream	1	1	0	745	335	low	.	.	mismappers(1),mismatches(1)	CCAG___GGCACCAGCGGCTGTCGGTGACGAGCCTGCTCGTCTGCCAtGGATTGCTGATGGTCGGCACCAGCCTGGGAGTCCTCGTGGCCCTGCCGGTCCCACGTCTGCAAGGGATTCCCAAAGTGACCG|TGGCCACATCATTTCCACGTTTTCCACATCCGGGAGGAAGCCTGGACTGTGCAGCCTTCGGGCACCCGGCACAGACACTGTGCTGGCAGGAGCTTCAGACACGCCAAGTGGATGGATTTGGATTGAAC	out-of-frame	PGHQRLSVTSLLVCHGLLMVGTSLGVLVALPVPRLQGIPKVT|vatsfprfphpggsldcaafghpaqtlcwqelqtrqvdgfgl	.
TALL066	PRKCE	SOCS5	+/.	+/.	2:46113302	2:46759555	intron	CDS	deletion	downstream	upstream	0	0	2	1	102	low	.	.	.	.	.	.	.
TALL066	CLYBL	CLYBL(12382),ZIC5(53448)	+/+	./+	13:99891437	13:99909516	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	33	3	low	.	.	.	ATGATCGACATGCCATTACTGAAGCAGGCCCAGAACACTGTTACGCTTGCCACCTCCATCAAGGAAAAATGATCTGTTAAATGAAGCTGTCATCAG|GACTCATGACCCAACACCACTCCAGTGCTGTGGACTCAGGTTAATAAGAGAAGGAACAGTTAGATTGCTATCTGT	out-of-frame	MIDMPLLKQAQNTVTLATSIKEK*svk*schq|ds*	.
TALL066	C5orf56	RAD50	+/+	+/+	5:132449673	5:132556329	CDS	5'UTR	deletion/read-through	downstream	upstream	0	0	2	518	1	low	.	.	mismappers(1)	CCCCACTCCCCGCCGCAtGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGG...|...AAGATATCTATTGCTGGGAGCACTGATCGGAATGGATTACCTCTACATTCT	.	.	.
TALL066	DLEU2	BRD3	-/-	-/-	13:50125302	9:134053590	splice-site	splice-site	translocation	upstream	downstream	2	0	0	217	115	low	.	.	.	CGGGCCCCGCCGAGGGGGGACACCTGGCTGAGGCACAGCTGCCGCCGTGCCTTTCCGCGCGAGCCCAGAGCTCCGATCCCTGCGCGGGCTCGAGAGCTCGCCCCGAACGGGGGTCTTCCTCCTCCGCCGTTGACAG|CTGTCGCCTGGTTGGGCCCGGAAATGGGACGTCG	.	.	.
TALL066	MAD1L1	DNAAF5	-/-	+/+	7:2149152	7:754589	splice-site	splice-site	inversion	upstream	upstream	2	0	0	149	37	low	.	.	.	CCTGAGCGCACTCTGGAGGGATTCTGGCATCAGGGAGGCTTTCAGCCGGAGAAGCGAGTTTCAGCTG___GACTCCAGAAGACCTTTCCAGATTCGTGGTTGAGCTGCAGCAGAGGGAGCTTGCCTTGAAGGACAAGAACAGCGCCGTCACCAGCAG|AGCGCCGCCCTGTGCTGGGCTGC	out-of-frame	DSRRPFQIRG*AAAEGACLEGQEQRRHQQ|saalcwa	.
TALL066	ZXDC	NREP	-/-	-/-	3:126459653	5:111735507	splice-site	splice-site	translocation	upstream	downstream	0	2	0	185	4239	low	.	.	.	TGAATGGGTCCCAG___GAAAGTGGGGGCTCAGCAAGAACTGATTACCGAGCCATTCAACTAGCCAAGGAAAAAAAGCAGAGAGGAGCGGGGAGCAATGCAG|GTTTATTACCCAGAACTCTTTGTCTGGGTCAGTCAAGAACCATTTCCAAACAAGGACATGGAGGGAAGGCTTCCTAAG___GGAAGACTTCCTGTCCCAAAGGAAGTGAACCGCAAtAAGAACGATG	out-of-frame	ngsqESGGSARTDYRAIQLAKEKKQRGAGSNA|gllprtlclgqsrtiskqghggkas*	.
TALL066	KIAA0922	SKIV2L2	+/+	+/+	4:153598732	5:55343331	splice-site	splice-site	translocation	downstream	upstream	0	2	0	1178	74	low	.	.	.	CTCACTCCGATTTAAGGTGCCCGAGTCCACGCTGATGGACTGCCGTAGAC|AACGTGGTGTAGTATGGGAAGAAACTATTATTTTGCTTCCTGATAACGTCCA?TATGTCTTTCTTTCGGCTACTATTCCAAATGCCCGACAGTTTGCTGAATGGATTTGCCATTTACATAAACAG___ATTATCGGCCCACTCCATTGCAACACTACATTTTTCCAGCAGGGGGAGATGGCCTGCATCTTGTGGTTGAT	out-of-frame	SLRFKVPESTLMDCRR|qrgvvweetiillpdnv?yvflsatipnarqfaewichlhkqiigplhcnttffqqgemacilwl	.
TALL066	AC009961.3	LRRFIP2	-/-	-/-	2:159710717	3:37055165	splice-site	splice-site	translocation	upstream	downstream	0	1	0	17	147	low	.	.	.	CCCAAACCTGGCAAGGATGGTGCAGATTTTGGCAGATTATGGCTTTGTCCCCACCCAGCACTGATGATATTATAAA|GAGATGCCAATAGACAAATTAGCGAATACAAATTTAAGCTTTCAAAAGCAGAACAGGATATAACTACCTTGGAGCAAAGT___ATTAGCCGGCTTGAGGGACAGGTTCTGAGATATAAAACT	.	.	.
TALL066	ZEB2	ARHGAP15	-/-	+/+	2:144424796	2:143624133	splice-site	splice-site	inversion	upstream	upstream	0	1	0	64	359	low	.	.	.	AGAAGAAATGAAGGAAGACTATGACACTATGGGGCCAGAAGCCACGATCCAGACCGCAATTAACAATGGTACAG|AAGAGAAGCTGAATTTGGACGACAGCCAGTGGGAGGACATCCACGTTGTC...TCCCTTACAGTTTCTTTGAGCAGTTTGTGGAAGCGATCA___AAAAGCAAGACAACAACACAAGAATTGAAGCTGTAAAATCTCTTGTACAAAAACTCCCTCCGCCAAATCGTGACACCATGAAAG	in-frame	EEMKEDYDTMGPEATIQTAINNGT|eEKLNLDDSQWEDIHV	.
TALL066	SH2B1	SLC25A11	+/+	-/-	16:28863754	17:4939212	splice-site	splice-site	translocation	downstream	downstream	1	0	0	60	259	low	.	.	.	CTCTGGTGGGATCCAAGCACTTCCCCCGCTGCGTCTGTGGTCGCTTTTAGGTGCAACTGGAGAAGGCACTGAAGCCCTACGAGATTCACACCGTCTTCGGTCTCCTGGGGTCGGCGCCGAGTGGGAGGATGGCGGAA|GATGGGAGaTACAGTTTTTGTCCAGCCCCTGGACCTGGTGAAGAAC	out-of-frame	MAE|dgrysfcpapgpgee	.
TALL066	SH2B1	SLC25A11	+/+	-/-	16:28846827	17:4939212	splice-site	splice-site	translocation	downstream	downstream	1	0	0	33	259	low	.	.	.	GGCTCCGGGAGGCAGCTGCGGCTCCGACTGCTCAGGAACCTCCTCCTGGGCCCGGCAGAGAGAGACCCCGAGTCCCCCGGAGTCCGACTCGCTACGCGGGTCTTGCGAGATATCTGGCCGCCTCTGCCGCAGCTGGAG|GATGGGAGCTACAGTTTTTGTaCAGCCCCTGGACCTGGTGAAGAACCGGATGCAGTTGAGCGG	.	.	.
TALL066	PQLC1	CTDP1	-/-	+/+	18:79943329	18:79753652	splice-site	splice-site	inversion	upstream	upstream	1	0	0	217	192	low	.	.	.	CTGGtGTGCAGTGGTACAATCTCGGCTCACTGCgGCCTCTGACTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGaGCCTGCCACCATACCCAG___GTTTGG...AGCTGTGCACCGAGGTCCGTGTGGCCAACGAGCTCAACGCCAGGCGCCGCTCCTTTACAG|AGGCCACAAGAGGAAGCTGAATGAAGAGGACGCCGCCAGCGAGTCCAGCAGGGAGTCCAGCAACG	out-of-frame	LCTEVRVANELNARRRSFT|eatrgs*	.
TALL066	PQLC1	CTDP1	-/-	+/+	18:79919184	18:79753652	splice-site	splice-site	inversion	upstream	upstream	0	1	0	131	192	low	.	.	.	CGAAGCCATGCTGGGTGTGCCCCAGCTTTAaCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|AGGCCACAAGAGGAAGCTGAATGAAGAGGACGCCGCCAGCGAGTCCAGCAGGGAGTCCAGCAACGAGGAcGAGGGCAGCAGCTCCGAGGCCGACGAGATGGCCAAGGCGCTGGAGGCGGAGCTCAACGACCTCATGTGAGCGCGGGCAGCGGGCAGGGACTGAAGCCTGAC	in-frame	EAMLGVPQL*RNHRHQSTEGMr|GHKRKLNEEDAASESSRESSNEDEGSSSEADEMAKALEAELNDLM*	.
TALL066	PDGFA	MAD1L1	-/-	-/-	7:518939	7:1816228	splice-site	splice-site	duplication	upstream	downstream	1	0	0	29	555	low	.	.	.	ACTGAATTTCtCCGCCACAGGAGACCGGCTGGAGCGCCCGCCCCGCGGCCTCGCCTCTCCTCCGAGCAGCCAGCGCCTCGGGACGCGATGAGGACCTTGGCTTGCCTGCTGCTCCTCGGCTGCGGATACCTCGCCCATGTTCTGGCCGAG|GCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCA	in-frame	MRTLACLLLLGCGYLAHVLAE|ATSPSGSKMQLLETEF	.
TALL066	BCL11B	REPIN1	-/-	+/+	14:99231345	7:150369671	splice-site	splice-site	translocation	upstream	upstream	1	0	0	242	1000	low	.	.	.	ACCTGCTCTCACCCACGAAAGGCATCTGTCCCAAGCAGGAGAACATTGCAG___GGCCGTGCAGGCCTGCCCAGCTGCCAGCGGTGGCCCCCATAGCTtCCTCCTCCCACCCTCACTCATCCcTGATC...GACGGGACTCAGGGTGAGGGTCAGACGGAGGCTCCCTTTGGATGCCAGTGTCAGTTGTCAG|GTAAGGCTGGCCTCTCTGCAGTCAGAGGTCTGAGCTCTGCCATGGGGATAGGGGTGTCTTTAT	out-of-frame	DGTQGEGQTEAPFGCQCQLS|gkaglsavrglssamgigvsl	.
TALL066	BCL11B	REPIN1	-/-	+/+	14:99271161	7:150369671	splice-site	splice-site	translocation	upstream	upstream	0	1	0	272	1000	low	.	.	.	CGCAAACAGGGCAACCCGCAGCACTTGTCCCAGAGGGAGCTCATCACCC|GTAAGGCTGGCCTCTCTGCAGTCAGAGGTCTGAGCTCTGCCATGGGGATAGGGGTGTCTTTATTACTGCAGTTTTCTCTAACACCTGGGGGCTACCGGAGTGTGGGCCGAAGCAGGCGCTGCAGCCGCGGAAGTATCCCCAGGAACATCCCCAAGAGGAGCTGGAAAAAGCCTCATCCCCAG	out-of-frame	RKQGNPQHLSQRELIT|rkaglsavrglssamgigvslllqfsltpggyrsvgrsrrcsrgsiprnipkrswkkphp	.
TALL067	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	139	119	52	450	453	high	.	.	duplicates(12),low_entropy(26),mismappers(6),mismatches(28)	GGTCACCTTCTACCTCCCGCTACTGATCATGTGCATCACCTACTACCGCATCTTCAAGGTCGCCCGGGATCAGGCCAAGAGGATCAATCACATTAGCTCCTGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAGTGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCCCAGACAGGCACGCAAGACTCCTCTGGGCCCGAGTGGGCTGAATCCCATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGACGGTGGGACAGACGGGGATGCGTGCACATGTGTGTGCATGGGTGCATACGTGTAGGGACGTGCATGACCTCTGAGCAAGG	out-of-frame	VTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL067	NUP214	ABL1	+/+	+/+	9:131222930	9:130854064	splice-site	splice-site	duplication	downstream	upstream	19	25	38	369	678	high	.	.	duplicates(2),mismappers(1),mismatches(4)	CTTTGGCCAG___CAATCATCCTCTTCCAGTGGTAGCGTGTTTGGGTCTGGAAACACTGGAAGAGGGGGAGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGTCAGGATGCAGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGATCCACAGCTACCTCAA___ATACCTCTAACCTATTTGGAAACAGTGGGGCCAAGACATTTGGTGGATTTGCCAGCTCGTCGTTTGGAGAGCAGAAACCCACTGGCACTTTCAGCTCTGGAGGAGGAAGTGTGGCATCCCAAGGCTTTGGGTTTTCCTCTCCAAACAAAACAG|AAGCCCTTCAGCGGCCAGTAGCATCTGACTTTGAGCCTCAGGGTCTGAGTGAAGCCGCTCGTTGGAACTCCAAGGAAAACCTTCTCGCTGGACCCAGTGAAAATGACCCCAACCTTTTCGTTGCACTGTATGATTTTGTGGCCAGTGGAGATAACACTCTAAGCATAACTAAAG___GTGAAAAGCTCCGGGTCTTAGGCTATAATCACAATGGGGAATGGTGTGAAGCCCAAACCAAAAATGGCCAAGGCTGGGTCCCAAGCAACTACATCACGCCAGTCAACAGTCTGGAGAAACACTCCTGGTACCATGGGCCTGTGTCCCGCAATGCCGCTGAGTATCTGCTGAGCAGCGGGATCAATGGCAGCTTCTTGGTGCGTGAGAGTGAGAGCAGTCCTGGCCAGAGGTCCATCTCGCTGAGATACGAAGG...CGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAGTTGGTTCATCATCATTCAACGGTGGCCGACGGGCTCATCACCACGCTCCATTATCCAGCCCCAAAGCGCAACAAGCCCACTGTCTATG	in-frame	FGQQSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKT|eALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYE	.
TALL067	NUP214	ABL1	+/+	+/+	9:131222930	9:130854067	splice-site	splice-site	duplication	downstream	upstream	0	3	38	369	678	high	.	.	duplicates(1),mismappers(1),mismatches(3)	GGAAACACTGGAAGAGGGGGAGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGTCAGGATGCAGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGATCCACAGCTACCTCAA___ATACCTCTAACCTATTTGGAAACAGTGGGGCCAAGACATTTGGTGGATTTGCCAGCTCGTCGTTTGGAGAGCAGAAACCCACTGGCACTTTCAGCTCTGGAGGAGGAAGTGTGGCATCCCAAGGCTTTGGGTTTTCCTCTCCAAACAAAACAG|CCCTTCAGCGGCCAGTAGCATCTGACTTTGAGCCTCAGGGTCTGAGTGAAGCCGCTCGTTGGAACTCCAAGGAAAACCTTCTCGCTGGACCCAGTGAAAATGACCCCAACCTTTTCGTTGCACTGTATGATTTTGTGGCCAGTGGAGATAACACTCTAAGCATAACTAAAG___GTGAAAAGCTCCGGGTCTTAGGCTATAATCACAATGGGGAATGGTGTGAAGCCCAAACCAAAAATGGCCAAGGCTGGGTCCCAAGCAACTACATCACGCCAGTCAACAGTCTGGAGAAACACTCCTGGTACCATGGGCCTGTGTCCCGCAATGCCGCTGAGTATCTGCTGAGCAGCGGGATCAATGGCAGCTTCTTGGTGCGTGAGAGTGAGAGCAGTCCcGG	in-frame	GNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKT|aLQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSP	.
TALL067	NUP214	ABL1	+/+	+/+	9:131222930	9:130854801	splice-site	splice-site	duplication	downstream	upstream	0	1	3	369	815	medium	.	.	mismatches(1)	GGAAACACTGGAAGAGGGGGAGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGTCAGGATGCAGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGATCCACAGCTACCTCAA___ATACCTCTAACCTATTTGGAAACAGTGGGGCCAAGACATTTGGTGGATTTGCCAGCTCGTCGTTTGGAGAGCAGAAACCCACTGGCACTTTCAGCTCTGGAGGAGGAAGTGTGGCATCCCAAGGCTTTGGGTTTTCCTCTCCAAACAAAACAG|GTGAAAAGCTCCGGGTCTTAGGCTATAATCACAATGGGGAATGGTGTGAAGCCCAAACCAAAAATGGCCAAGGCTGGGTCCCAAGCAACTACATCACGCCAGTCAACAGTCTGGAGAAACACTCCTGGTACCATGGGCCTGTGTCCCGCAATGCCGCTGAGTATCTGCTGAGCAGCGGGATCAATGGCAGCTTCTTGGTGCGTGAGAGTGAGAGCAGTCCTGGCCAGAGGTCCATCTCGCTGAGATACGAAGGGAG	in-frame	GNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKT|gEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG	.
TALL067	FBXO3	RP11-115J23.1(18522),RP11-466I1.1(77613)	-/-	./-	11:33768851	11:29082343	splice-site	intergenic	deletion	upstream	downstream	32	11	20	94	36	high	.	.	duplicates(3),mismatches(1)	GGGCCAGGCAAGATGGCGGCCATGGAGACCGAGACGGCGCCGCTGACCCTAGAGTCGCTGCCCACCGATCCCCTGCTCCTCATCTTATCCTTTTTGGACTATCGGGATCTAATCAA___CTGTTGTTATGTCAGTCGAAGACTTAGCCAGCTATCAAGTCATGATCCGCTGTGGAGAAGACATTGCAAAAAATACTGGCTGATATCTGA___GGAAGAGAAAACACAGAAGAATCAGTGTTGGAAATCTCTCTTCATAGATACTTACTCTGATGTAGGAAGATACATTGACCATTATGCTGCTATTAAAAAGGCCTGGGATGATCTCAAGAAATATTTGGAGCCCAGGTGTCCTCGGATGGTTTTATCTCTGAAAG|CCAGAAAGACTTCTATCAAAATGCTAAATAGAAGCCATGACCACAGATGTCCTGTCAAATTGTTTATCTTTGGACAAGAGTTTGTCATATTTCACTACTAAATATTATAATTGCTCTAAACTTTAAATTAATTTTCACTGGTTAACAAATTTTCATTTTATTTCCAGTTTGCTAAAAAATTTTAGTATGAATGACTGTTGAATTTTTATCAATTTCTTTTTGTATCAATCAACATGAACGTATGATTCATCTTGTATATTCTACTAATGTGGTGACTTACAATGATATATTTCCA	out-of-frame	MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYWLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLK|arktsikmlnrshdhrcpvklfifgqefvifhy*	.
TALL067	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	7	12	5	53	47	high	.	.	low_entropy(2),mismappers(1),mismatches(4)	GAAAATACACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGCGGGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGG...CCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAGGTGAGTGGGGCGGGGCAGGGAGCCTAGCG	.	.	.
TALL067	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	10	0	32	33	high	.	.	duplicates(1),low_entropy(2),mismappers(1)	GGCTTGAGAGTCTCCGGTGGGCTGAGGAGAATGGGATTATAATCCCATCAGAGAGAGGAAGAGGAGTGGGTAGAGAGAATGCTGGAGGCATTTGCTCTTTGAGGTTTATATAGCCAGGGAAGAGT...TCTAACTGTGCATTCTCTATGCTAGACTTACTTGGGGGAACTTGTATCTTTAAAATTTTGTAACCCCATGTCTTTGTCTAGTTGAAGTCTAAGTGACCTCtCCCAGGGTTGAGAAAGAAGCTGA...CAGCAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGA	.	.	.
TALL067	PEX5L	RASA2	-/-	+/+	3:179971594	3:141607678	splice-site	splice-site	inversion	upstream	upstream	4	4	4	122	82	high	.	.	duplicates(2)	ACCTTTTCCCCTCTTTTGGTGGGCAAGTAAGCACGGGGGAAAAGCATCCGGTGGCCTCAGGGAGCCCTGAAGAAACCGAAGCAGAATGTACCAGGGACACATGCAG___...CTGACAGTGAAATGGATGGAAGGACCCACATTCCATCTCTACTTAATGCCCTTTTGTCCAGAAACCGGGTCATGCAAATGAGCTACTTG___AAAAGTAAAGAACAAGGATATGGAAAACTAAGCAGTGATGAAGACCTCGAAATAATTGTTGATCAAAAGCAG|GCAAAGATGCAATCTACACAATCCCAGTAAAAAACATTCTTGCTGTGGAAAAACTGGAAGAGAGCTCTTTCAACAAGAAAAAT___ATGTTCCAAGTAATACATACGGAGAAACCACTCTATGTCCAGGCAAATAACTGTGTAGAAGCTAATGAATGGATAGACGTACTCTGCAGGGTGAGCCGATGCAATCAAAACAGGCTCAGTTTTTATCATCCCTCTGTGTATCTGAACGGAAA	out-of-frame	DSEMDGRTHIPSLLNALLSRNRVMQMSYLKSKEQGYGKLSSDEDLEIIVDQKQ|akmqstqsq*	.
TALL067	NF1	PSMD11	+/+	+/+	17:31343135	17:32446945	splice-site	splice-site	deletion	downstream	upstream	3	7	0	73	117	high	.	.	.	CTTAATAAG___GACTCGCCTCTGCACAAAGCCCTCTTTTGGGTAGCTGTGGCTGTGCTGCAGCTTGATGAGGTCAACTTGTATTCAGCAGGTACCGCACTTCTTGAACAAAACCTGCATACTTTAGATAGTCTCCGT...GACAAG___AGTCCAGAGGAAGTATTTATGGCAATCCGGAATCCTCTGGAGTGGCACTGCAAGCAAATGGATCATTTTGTTGGACTCAATTTCAACTCTAACTTTAACTTTGCATTGGTTGGACACCTTTTAAAAG|TGAAGCGTGACATTCAGGAAAACGATGAAGAGGCAGTGCAAGTCAAAGAGCAGAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGACAAGCTGCAG___AGCTTGGAGGACTCCTGAAGTATGTACGACCCTTCTTGAATTCCATCAGCAAGGCTAAAGCAGCTCGCCTGGTCCGATCTCTTCTTGATCTGTTTCTTGATATGGAAGCAGCTACAGGGCAGGAG___GTCGAGCTGTGTTTAGAGTGCATCGAATGGGCCAAGTCAGAGAAAAGAAC	in-frame	DKSPEEVFMAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLK|vKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR	.
TALL067	NF1	ZNF207(24676),RP11-227G15.10(1451)	+/+	./+	17:31343135	17:32406562	splice-site	intergenic	deletion	downstream	upstream	0	1	3	73	7	high	.	.	mismappers(2)	GCTTGATGAGGTCAACTTGTATTCAGCAGGTACCGCACTTCTTGAACAAAACCTGCATACTTTAGATAGTCTCCGTATATTCAATGACAAG___AGTCCAGAGGAAGTATTTATGGCAATCCGGAATCCTCTGGAGTGGCACTGCAAGCAAATGGATCATTTTGTTGGACTCA...CTTTGCATTGGTTGGACACCTTTTAAAAG|GTTGATTTTCTTTTGGAATGGGATCCCTTTATTCTGATAATTGATTCTAACAGAAGACTTCTACTCAATGTGATAATGGAATGATTTGGAGCAACTCTACTATCAAATCAGGGAAAGCTAGCCTCCAGGGTGATCCAGAGGTTCTGCTGTCACCTTACAAACCCAAGACAAGATTTTTCAC	out-of-frame	FALVGHLLK|g*	.
TALL067	GAS2	RP11-17A1.3	+/+	+/+	11:22775348	11:22834907	intron	splice-site	deletion/read-through	downstream	upstream	15	28	15	1565	102	medium	.	.	mismappers(3),mismatches(6)	CTCATCAGAACTGTAGAAGTGCAGCCTTGAGAGTTGAGGACAAAAGGAGGAGTGGGCAACGAGAGGCTGGTGTAGCAAGGGAGACATGATGCCAGGCAGACACACAGAGCCAGCTCATGGAGAGCTACCTGTATGATGAGAGCTTTGGCTTTCTCCTGAAGGCAATAAGAAGATTCTAAATAATTTTTAGACGAGGAGAAACATGAGTAGATTGCATTTTAAATCATTCAGGCTGTAGTGCAGATAATGAATTGAAAAGGTATAAAGTTGGAGGACGAGCATTCCACCGTTTTGGCTTGGAGAGTGTGGAGGTCAAGAGGGTGGCAGCTCATTCTGGGGACCTACCTCTTGAAATTCCAG|AGTTCCACTCTTTTTGTCGACAATAATATGGCGCCCAAACACGTGGGGCCTCAGAGAAGACTCTGGATCCGGAAGGAGTATCCCAAAACCAGAGCTAAGGTACCAGCTGGAGCCCACTGAAGCCTCACCGAGTTTGGGCTTCTCCTCCTGTGGAACTG___GAAACCAAAATCATGGTATTTTGAAAACCAGAGGTATGAATCTCCCTCGTTTGGCATCCCACTGGGCCTGGACCTGTTTCACTGCTAATGTTCTGCTGCCAAAACTATACAAGCTGCCTGGACTATTGCAGAAGAG___AGACAGAGTCTTGCTCTGTTGCCCAGAATGGAATGCAGTAGCACAATCCTAACTAATCGTAACCTTGAACTCCTGGGTTCAAGCGATCCTCCTGCCTCAGCCTCCTCAGTATAGGACTACAGGCGTGCCCAG___AA...GATCACTTTCTCAGTCTTCATTATCTGCCTGCAGGGCTCCTGCCAGTCAAAGTCATTATGCAG___ACTGAAGGAAATAACAAGAAGGATCTTTAAGAGATGCCCTTGTGTAAGAAACAGCGTTGCCA	.	.	.
TALL067	GAS2	RP11-17A1.3	+/+	+/+	11:22755953	11:22834907	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	3	817	102	medium	.	.	mismatches(2)	ATTCAAGGAGAGCATGGATGCTAACAAGCCCACAAAG___AATCTACCGTTGAAGAAGATCCCATGCAAAACCAGTGCACCCTCGGGCTCCTTTTTTGCCAGAGACAATACAGCAAATTTCTTATCCT...GCTGGAAAAAGAGATTGAACAAGAAGAAACACTTTCTGCCCCTTCTCCTTCACCTTCTCCTTCATCAAAGTCTTCTGaAAAAAAGAGTACAGGAAACTTACTGGATGATGCA___GTGAAACGAATTTCTGAAGATCCTCCTTGCAAATGCCCAAACAAGTTCTGTGTGGAGCGGCTCTCCCAAGGAAGATACCGAGTGGGAGAAAAGATCCTCTTCATTAGG|AGTTCCACTCTTTTTGTCGACAATAATATGGCGCCCAAACACGTGGGGCCTCAGAGAAGACTCTGGATCCGGAAGGAGTATCCCAAAACCAGAGCTAAGGTACCAGCTGGAGCCCACTGAAGCCTCACCGAGTTTGGGCTTCTCCTCCTGTGGAACTG___GAAACCAAAATCATGGTATTTTGAAAACCAGAGGTATGAATCTCCCTCGTTTGGCATCCCACTGGGCCTGGACCTGTTTCACTGCTAATGTTCTGCTGCCAAAAC...ATAGGACTACAGGCGTGCCCAGGTAAGGCTGGCTTCTTTTACTCTATTACGTTTTTTTTTTTAGTTTTGTCTGCTCATCATTTGTCTGTTTCCCCTTTCTATTTTCCTTTGGGTTATTT	out-of-frame	LEKEIEQEETLSAPSPSPSPSSKSSeKKSTGNLLDDAVKRISEDPPCKCPNKFCVERLSQGRYRVGEKILFIR|sstlfvdnnmapkhvgpqrrlwirkeypktrakvpagah*	.
TALL067	RP11-297D21.4	NFATC3	+/+	+/+	16:67492121	16:68191172	intron	CDS	deletion	downstream	upstream	3	0	12	57	139	medium	.	.	low_entropy(2),mismappers(1),mismatches(1)	AAGAAGGGAGCGAGCCCTTCTCAAGCTTGGAAAGTTTCCAGACTGCTGGGCCAGCCTCCTCCCCAGAGGGAAACTGAGGTCCGATTGAG___GTTTCTCCAAGACCGCCCACTCCTGCTCCTGTCCCCAAACCCCTTTCTGCCTAGGGTTCCTGGAAGCCAAGGAAACAGAACGAACTGTTCCCTGGGTGGGCGAGCCACTGCAGAGTACAAAGCTTTCAGGCCGCCTGCCTCATTAGCACTAATGGCTGCTCCCTTCCGCCCTGTGTCGTCAGGACTGTCTATGCCTGGTCTCATCAGCACAAGGCTGGG...GCTGAAGAAGTCCCAGGAGTCCTCCCATGTCCTCTCAGCAACCCAGGCTGGAGCCTACTCCTTGGTGTTGGCAAAGGAAACCGTCTTTGAAG|GATGCAACTCTTTCTGGTTTAGTGAATCTTGGCTGTCAACCACTGTCATCCATACCATTTCATTCTTCAAATTCAGGCTCAACAGGACATCTCTTAGCCCATACACCTCATTCTGTGCATACCCTGCCTCATCTGCAATCAATGGGATATCATTGTTCAAATACAGGACAAAGATCTCTTTCTTCTCCAGTGGCTGACCAGATTACAGGTCAGCCTTCGTCTCAGTTAC	.	.	.
TALL067	TLX3	RP11-61O1.1(124677),AL163760.1(1812)	+/.	./.	5:171310299	14:98329820	CDS	intergenic	translocation	upstream	downstream	6	0	7	723	80	medium	.	.	duplicates(1)	.	.	.	.
TALL067	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	7	4	0	401	98	medium	.	.	low_entropy(2),mismappers(1),mismatches(3)	AAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGA	.	.	.
TALL067	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	1	7	2	21	29	medium	.	.	.	CGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCT...GAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTT	.	.	.
TALL067	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	7	1	157	279	medium	.	.	low_entropy(2),mismatches(1)	GCGGgGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGG...CGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL067	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	34	279	low	.	.	read_through(6)	GAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTG	out-of-frame	ELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL067	VEGFC(32715),RP11-624A4.1(41172)	VEGFC	./-	-/-	4:176825442	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	4	9	61	medium	.	.	mismatches(1)	TAACAAGATGACTCACAGTGGGCTCTTAGTTTAGGCTAATTAGATGAATTAGAATGGGATTACCAGAAGGATCAACTATGTAATTAGAGGGTTGGGCCTTTGAATTGGGTAATAACAGCTTAATC...TAGAGATTGAGTAGCATGGCCAAAAATTCAATCAATCACATCTATGTAATGAAATCCCAATAAAATCCATGGACACTGAAGCTCAGGAGAACCCCTGGTTGTCAGCTCTTCAGTATTGCCGCACAAGTGTGTGTTGAATAGAATGCCATCTAGGACTCCACAAAGACAGGACAATGGAAGCTTCAG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGACTATAAAATTTGCTaCAGCACATTATAATACAGAGATCTTGAAAA___GTATTGATAATGAGTGGAGAAAGACTCgAT	.	.	.
TALL067	NF1	RP11-805L22.3(51943),CTC-542B22.1(9740)	+/+	./+	17:31343135	17:31820991	splice-site	intergenic	deletion	downstream	upstream	5	0	0	73	6	medium	.	.	low_entropy(1)	CACTAACCAAATTACAGCCACTTCTTAATAAG___GACTCGCCTCTGCACAAAGCCCTCTTTTGGGTAGCTGTGGCTGTGCTGCAGCTTGATGAGGTCAACTTGTATTCAGCAGGTACCGCACTTCTT...CAATGACAAG___AGTCCAGAGGAAGTATTTATGGCAATCCGGAATCCTCTGGAGTGGCACTGCAAGCAAATGGATCATTTTGTTGGACTCAATTTCAACTCTAACTTTAACTTTGCATTGGTTGGACACCTTTTAAAAG|GTAACACCCATTCTGATGCAGCCCAGCACACAAGACCCTTCCCAGTGTCACCCTTGCTGACTTTGCCACGTCCCATTGAGAGTGAATCAGACAGTACCTTCCTAGGCAGAGTGCCGC	out-of-frame	NDKSPEEVFMAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLK|gnthsdaaqhtrpfpvsplltlprpiesesdstflgrvp	.
TALL067	FOXJ3	SSBP3	-/-	-/-	1:42188737	1:54281527	splice-site	splice-site	duplication	upstream	downstream	0	2	1	83	302	medium	.	.	.	GTATGAGACAGGCAGATCTCAAGAACTGGTCTTTAGACCAGGTTCAGTTTGCCGATCTTTGTTCTTCTCTTAATCAGTTCTTTACACAAACTGGCCTTATACATTCACAGAGTAATGTTCAACAAAATGTTTGTCATGGTGCCATGCATCCAACAAAACCTTCCCAACACATTGGAACAG|AGTGCAGCAGCTGCCCCGAGCCCCGTGCTTGGCAACATTCCCCCCAACGATGGGATGCCGGGAGGCCCCATCCCGCCAGGTTTCTTTCAG___CCTCCGGGAGGAGTTCCTGGGACACAGCCATTGCTGCCCAATTCTATGGATCCCACACGACAACAAG___GCCACCCCAACATGGGAGGATCAATGCAGAGAATGAACCCTCCCCGAGGCATGGGGCCCATGGGTCCCGGCCCACAG___AATTACGGCAGCGGCATGAGACCACCACCCAAC	out-of-frame	MRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPTKPSQHIGT|ecsscpeprawqhspqrwdagrphparflsasgrsswdtaiaaqfygshtttrppqhgrinaenepsprhgahgsrptelrqrhetttq	.
TALL067	VEGFC(53944),RP11-624A4.1(19943)	VEGFC	./-	-/-	4:176846671	4:176729746	intergenic	splice-site	deletion/read-through	upstream	downstream	0	1	2	58	61	medium	.	.	.	CTGGACTTCTGGGGCCTGACCCTTTTGGAACGGGGGTTTTAAGATTCATAATCGACAAA___CATCCTGGGAATTCAATATTTTCTCCAAACTTTCTGAAGATACTG___GTGAGAAGAAATATCAGAAGCAGTCGAGAAACCAGGAAGTGG|GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTACGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATGTACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGCCAACCTCAACTCAAGGACAGAAGAGACTATAAAATTTG	.	.	.
TALL067	TPK1	DNAJB9	-/-	+/+	7:144765880	7:108571717	splice-site	splice-site	inversion	upstream	upstream	0	2	0	7	59	medium	.	.	.	ATTTGGACAAAAT___GGAATTTGAAGTACTGCCTTGTAATTCTTAATCAGCCTTTGGACAACTATTTTCGTCATCTTTGGAACAAAG|GATATTAGAAATGGCTACTCCCCAGTCAATTTTCATCTTT...AGCTACTATGATATCTTAGGTGTGCCAAAATCGGCATCAGAGCGCCAAATCAAGAAGGCCTTTCACAAGTTGGCCATGAAGTACCACCCTGACAAAAATAAGAGCCCaGATGCTGAAGCAAAAT	out-of-frame	iwtkWNLKYCLVILNQPLDNYFRHLWNK|gy*	.
TALL067	RANBP17	AL163760.1(19174),RN7SL714P(443)	+/.	./.	5:171265278	14:98350924	intron	intergenic	translocation	upstream	downstream	1	0	1	1	19	medium	.	.	.	.	.	.	.
TALL067	LZTFL1	SLC6A20	-/-	-/-	3:45826255	3:45782757	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	27	639	1	low	.	.	mismappers(5)	GAAAACCAGAAGTCACTGGAGGAGAATCTGGCGACAGCCAAGCACGATCTACTCAGGGTTCAGGAGCAGCTGCACATGGCTGAAAAG___GAATTAGAAAAGAAATTTCAGCAAACAGCAGCTTATCGAAACATGAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGATCTGAGGAAAAGACTGGCACA___ATATGAACCTGAAGATTAAAACTGAAGATTTCCTCTGGAAGCTACCACATGCAAACATACAAGCAGTCTCACCTCAGG...|...CAG___GTAGTTTCCTGGTCCCCTACATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGGCAGGGCAGCATCGGCGCCTGGAGGACCATCAGCC	.	.	.
TALL067	PTPRC	PTPRC(16277),MIR181A1HG(33933)	+/+	./+	1:198742020	1:198773560	CDS	intergenic	deletion/read-through	downstream	upstream	8	5	2	808	36	low	.	.	duplicates(1),low_entropy(9),mismappers(2),mismatches(1)	GATCAGGATGAATGATCTTTTTAAAGTGTTGTTGAATTCAGTTTGCTAGTATTTTGTTGAGGATTTTTGCATCAGTATTCATCAGGGATATTGACCGGTAGTTTTCTTTTTTTTGATGTGTCTTTGTCTGGTTTTGGTATCAGAGTAATACTGGCCTTGCAGAATGAGTTTGGAAGAATTCCTTTCTC...GTGAAGCCATTAGGTCCCGGGCTTTTCTTTGCTGGGAAACTTTTCATGACAACCTCCGTTTCATTACTTGTTGT___...CAATATCTTAACTACTAGTTATTGATTAGAAAGGAAAACACAACCATGGTTGAGAAAATATATAAGACACCTGAGGAAACTATGAACTCTTTTGAGTAGTTTATGTTTACACGAGGAGACTTTGTACTGGTACTCCCTTCCACTTATTTATGTTTCATAGTTTGCTTTAAAAAAATCATCTCAAAGAAAATATTATCTCTTGACTAGAAAAAAGAAAAAGCAACTGGAAGAGAGGTGACTCACATTCAGTTCACCAGCTGGCCAGACCACGGGGTGCCTGAGGATCCTCACTTGCTCCTCAAACTGAGAAGGAGAGTGAATGCCTTCAGCAATTTCTTCAGTGGTCCCATTGTGGTGCA|CTTGTTCTGAAGCCACGGGAACCTTGAGGTTACCTGCAGGGATAAAGAAGGCTCGCACAAGAATTAGATCTTCTCCTGCATCCTCTTTACTCTGCTGTGTCTTTTTGTTGAGACAGAGTCTCTCCCTCTGTCACCCAGGCTGGAATGCAGTGTCATGGTCCCTG	out-of-frame	qylny*llirkenttmvekiyktpeetmnsfe*fmftrgdfvlvlpstylcfivcfkkiiskkilsld*KKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVh|lf*	.
TALL067	GAS2	SVIP	+/+	-/+	11:22775348	11:22827290	intron	CDS	deletion/read-through/5'-5'	downstream	upstream	3	7	3	1565	396	low	.	.	low_entropy(1),mismatches(1)	GCCAGGCAGACACACAGAGCCAGCTCATGGAGAGCTACCTGTATGATGAGAGCTTTGGCTTTCTCCTGAAGGCAATAAGAAGATTCTAAATAATTTTTAGACGAGGAGAAACATGAGTAGATTGCATTTTAAATCATTCAGGCTGTAGTGCAGATAATGAATTGAAAAGGTATAAAGTTGGAGGACGAGCATTCCACCGTTTTGGCTTGGAGAGTGTGGAGGTCAAGAGGGTGGCAGCTCATTCTGGGGACCTACCTCTTGAAATTCCAG|ATTGAACATCTAAAATTCCCCGAGATGCAGCCTTGAAGAAATTTGATAAGAAAAACAGAAAGACAACAAAAATCTGTCCAGTGTGCAAAACATTTTTTTGTCTATCTTTGCTTTCTAGGTTTTTCTTTGGGGGTAGGGAGTTGGTTTATTTTTGGTAACATAGAAGGAGTGTTTCTACAACAGCCTTACATAAAACATCATTTCTTCACTGGGTATTTTGTAACTATACAAATTTTCCCCTAAACTTGCTTCACATCTGTAAGTATTTTACAATGCACAGCCATTTTAAAAGGAAGGATGTTACTAAAAGAGTATCTGAATTTAGAGAAGATATGATAGTTTTCATATATTAATATAAATATATTAAT	.	.	.
TALL067	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	11	0	101	14	low	.	.	mismatches(1)	AAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGC...CCTTCAGCCACCGGTCTCGACCTaTCCTCgCAGggCTTCTGCAgggTGctCgTTCACCTGCAAGgTGAACAATGTCCTgAC	.	.	.
TALL067	AP000783.1	GRAMD1B	+/+	+/+	11:123480893	11:123577367	intron	splice-site	deletion/read-through	downstream	upstream	7	0	2	32	33	low	.	.	.	CCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG...ACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGG	.	.	.
TALL067	DNM2	LDLR	+/+	+/+	19:10759811	19:11100223	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	3	109	74	low	.	.	low_entropy(1),mismatches(1)	GCTGATCCCGCTGGTCAACAAACTGCAGGACGCCTTCAGCTCCATCGGCCAGAGCTGCCACCTGGACCTGCCGCAGATCGCTGTAGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTGGAGAACTTCGTGGGCCG___GGACTTCCTTCCCCGCGGTTCAGGAATCGTCACCCGGCGGCCTCTCATTCTGCAGCTCATCTTCTCAAAAACAG|TGGGCGACAGATGCGAAAGAAACGAGTTCCAGTGCCAAGACGGGAAATGCATCTCCTACAAGTGGGTCTGCGATGGCAGCGCTGAGTGCCAGGATGGCTCTGATGAGTCCCAGGAGACGTGCT___TGTCTGTCACCTGCAAATCCGGGGACTTCAGCTGTGGGGGCCGTGTCAACCGCTGCATTCCTCAGTTCTGGAGGTGCGATGGCCAAGTGGACTGCGACAACGGCTCAGACGAGCAAGGCTGTC___CCCCCAAGACGTGCTCCCAGGACGAGTTTCGC	in-frame	LIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIFSKT|vGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEF	.
TALL067	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	2	3	19	11	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	TGTCATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTAT...GGATGTGATGTTGGAAAATTgCAACAACCTAGTGTCAtTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAAT...AAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCgCTTTGGGAGGCCGAG___GGATCATGGCACGTTACATAGTGGTGCCCCGAACAGCGACAGAATCAGGGGCTCTACAAGTGGCACTCAAACAGGCGACAGTCTGAACACGGG	.	.	.
TALL067	C1orf112	SELP	+/-	-/-	1:169662225	1:169619219	exon	splice-site	deletion/read-through/3'-3'	upstream	downstream	2	3	2	463	13	low	.	.	duplicates(1),low_entropy(4),mismappers(1)	TCTTTCTCATGGAGCAAAGAGCAGGATGACAGGGGACTGATCTCCCAAGGGAGGTTCCCCGATCTGAGTTACGGCACCAAATGTCACATGGTCTGTGTGAAGAGACCACCAAACAGGCTTTGTG...AGCAATTGTCTCGCCGCACAGTGACAGGCAATGGTCTCACTGCTTGGCGATAGCCTCACCGCTTGGCAATAGGTGATAGTCCCTTCGTGGTCACCAAAATGTGCCC?GAATTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGAAGCCATGGACCCTCGCAGTGAGTGTTACAGTTCTTAAAGGCGGCGTGTCCAGAGTTTATTCCTTCTGATGTTTGGATGTGTTCGGCCTTCTGGTGGGTTCATGGTCTCGCTGGCTCAGGAGTGAAGCTGCAGACCTTCTCG|GCCAACTGCCAAATAGCCATCTTGTACCAGAGATTCCAGAGAGTGGTCTTTGGAATTTCCCAACTCCTTTGCTTCAGTGCCCTGATCTCTG___AACTAACAAACCAGAAAGAAGTGGCAGCATGGACTTATCATTACAGCACAAAAGCATACTCATGGAATATTTCCCGTAAATACTGCCAGAATCGCTACACAGACTTAGTG	.	.	.
TALL067	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	5	1	0	10	10	low	.	.	.	CAGATCTAGTTATTTTGCTGCAATGCTGAGTGGCTGTTGGGCTGAAAGCTCCCAAGAGTACGTTACTCTTCAAGG___TATAAGCCATGTAGAACTGAATGTTATGATGCATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACTAATGTTGG...GTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTG	out-of-frame	VESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaa	.
TALL067	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	1	163	131	low	.	.	low_entropy(1)	GGGGGGTGGAGGGCCCATTTGACTGCAGGAATTGCTCAAGCACATAAGCACCTTGAAGTGTGTTACTAAGATACAAGAAACAGGTTTGCTTTTGCCTATTCCAGCATGGTGTACCTCTCTTAGG...ATTTAATCATCTGACATTACATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAG	.	.	.
TALL067	TNFSF8(39026),TNC(49957)	TNC	./.	-/.	9:114969621	9:115069239	intergenic	intron	deletion/read-through	downstream	upstream	0	0	5	13	1	low	.	.	.	.	.	.	.
TALL067	TNFSF8(39026),TNC(49957)	TNC	./.	-/.	9:114969621	9:115069239	intergenic	intron	deletion/read-through	downstream	upstream	0	0	5	13	1	low	.	.	.	.	.	.	.
TALL067	FRMPD2L2(1863),PTPN20A(14971)	PTPN20A	./+	+/+	10:46896425	10:46943918	intergenic	splice-site	deletion/read-through	downstream	upstream	2	2	1	8	9	low	.	.	.	TGAATGTCTAGTGCTGATTCCTGTTTTGCCTGCTCCTACCTGCCCCTCTGCTGGATGTACTGCAGAGAAGAGTCTTGGTGTCCTGTCATAGGGCCCATCTTGTTGGACTGCTGTGGCTGAGTATAGACCAGCATCAGGAAAGTCTCACTGTTAATGCAAGGAGCCACCAGAAGCTGACCTGGTCACCAGGCAGGGTCAGAACATATTGATGAGGACACAGAAAAA|GTTTTTGAAAATAAAGTTAATTCAGAGAAGGTAAAACTTTCTCTTCGGAATTTCCCACATAATGATTATGAGGATGTTTTTGAAGAGCCTTCAGAAAG___TGGC...TTCTG___ATACGCGCAAAATTGTTTCTGAAGGAGAACTAGATCAGTTGGCTCAGATTCGGCCATTAATATTCAATTTTCATGAGCAGACAGCCATCAAGGATTGTTTGAAAATCCTTGAGGAAAA	.	.	.
TALL067	RP11-297D21.4(4871),CTD-2012K14.8(25741)	NFATC3	./.	+/.	16:67492121	16:68191172	intergenic	CDS	deletion	downstream	upstream	0	4	0	57	139	low	.	.	mismappers(1)	.	.	.	.
TALL067	APLN(65582),XPNPEP2(18455)	XPNPEP2	./+	+/+	X:129720519	X:129749038	intergenic	intron	deletion/read-through	downstream	upstream	0	1	3	6	7	low	.	.	mismappers(1)	GACTTGATCATTTCCCTTTGCTTCGTGATTGTGTTAAGTGACTGCCAAAGGCCTGTTCCTGAATAGTCAGCACATTCCTCAGGACGGTGAGTGGGAGCCCATCTGCTCCTGGAGaGCTTCCTTTCCTTTATTGTGCTATTTTGGCCTCAATTTCCCATTTGGACAGGAGCATCTTCCAGCCGGTGGGGAAAGGGAGAGGGTGGAGAGGGGCGCCACAGCCTTCCTTCATTTCTCACTCATATCCCTGGTTTCT|CTGTACGCACCAGACCATTGAAATTTGGGTTCATTTGGTTTCTCAGAAAGGTATCATATTCCTGAAC___ACTTTTTT[t]GGGGCTCCTTTGCTTCTAGGGAGCACTTGGCAGGAGAAAGTATCTGGCGTCCGAAGCCAGATGCAGAAGCATCAAAAGGTCCCGACTGCCG	.	.	.
TALL067	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	2	0	2	209	142	low	.	.	low_entropy(1)	CTTGCAACATTTACCACTGGGATTTTAAAATGTGGTGGACCAATCATTCTTTTAGTCTGTGCATTTTCCCATTTTTTTCAACAGGAATGTCTAGAGACATTATTCCTGTTTTGCCACTGTATTTTTGGTGA...AAGTAACTGGCCTCTTTAGTATCACAAAGCTGGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGC	.	.	.
TALL067	FRMPD2	PTPN20CP	-/-	-/-	10:48163328	10:48107914	splice-site	splice-site	deletion/read-through	upstream	downstream	0	4	0	50	15	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	CCCACCCTCATTTATGCAAACTTCACCAAGAAAGGGATGAATCAACATTGGCGACCTCTTTGGAAAAGGATGTGAGGCAAAACTGCTATTCAGTTTGTGATATCATGAGACTTGGAAG|GTTTTTGAAAATAAAGTTAATTCAGAGAAGGTAAAACTTTCTCTTCGGAATTTCCCACATAATGATTATGAGGATGTTTTTGAAGAGCCTTCAGAAAG___TGGCAGTGATCCCAGCATGTGGACAGCCAGAGGCCCCTTCGGAAGAGACAGGTGGAGCAGTGAGGAT?AGGAGGCTGCAGGGCCATCACAGGCTCTCTCCCCTCTACTTTCTG___TATTCCATTCACCAGTTGAAGGACACTGTGTTGTTTCCAGATTTTGGCAATTATGGATAAAAGTACTACAGA	out-of-frame	HPHLCKLHQERDESTLATSLEKDVRQNCYSVCDIMRLGr|flkikliqrr*	.
TALL067	FRMPD2	PTPN20CP	-/-	-/-	10:48163328	10:48086865	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	50	23	low	.	.	.	AAACAGAGAGAGACCTTGGGCCAGTTCCTTGACACATTCTCCTGAGTCCCACCCTCATTTATGCAAACTTCACCAAGAAAGGGATGAATCAACATTGGCGACCTCTTTGGAAAAGGATGTGAGGCAAAACTGCTATTCAGTTTGTGATATCATGAGACTTGGAAG|ATACGCGCAAAATTGTTTCTGAAGGAGAACTAGATCAGTTGGCTCAGATTCGGCCATTAATATTCAATTTTCATGAGCAGACAGCCATCAAG...CCTTGAGGAAAAAACAGCAGCGTATGATATCATGCAGGAATTTATG___GCTTTAGAACTTAAGAATCTGCCTGGTGAGTTCAACTCTGGGAATCAACCAAGCAACAGAGAAAAAAACAGATACCGAG	out-of-frame	NRERPWASSLTHSPESHPHLCKLHQERDESTLATSLEKDVRQNCYSVCDIMRLGr|yaqncf*	.
TALL067	PIEZO1(14481),CDT1(3521)	PIEZO1	./-	-/-	16:88799692	16:88749479	intergenic	splice-site	deletion/read-through	upstream	downstream	3	1	0	23	95	low	.	.	.	CTGCCTTCCATAGATAAGCTGATGGACAGGATGCTGCCAGAAGCGTCTCCAAGGCCTTCAAAATGCCAAGGCGACTCCAGCATTTCTTCTCTCCTGCCACCTGCCCACGCACCAGCCGGAACC...ATGAGATGCTCCCAGAGACCACCTCAGGATGGGGGCTTCCTTCCTGACTTCAGCACAGCAGCACCTGTCACCACTCACCTCAAGAGGTGGCTCCCGAGCCTCCTGGGAGGGAAGGGGCCATGGCAGTTGCTGTCATCGTGGCCAGCCCTGGGGCTCCAGCCGGGGGCAGAAGCAGGCTCTGGAATGAGCTTGGACCCAGAAGTACAGTGCACAGGGGCTG|CCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCTTCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAG___GTCAC...ACCTGGGCATCTTGGTGGTCTCCTCTGTCTGCCTCGGCATCTGCGGGCGCCTTGCAAGGAACACCCGGCAGAGCCCACATCCACGGGAGCTG___GATGATGATGAGAGGGATGTGGATGCCAGCCCG	.	.	.
TALL067	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	2	1	0	99	14	low	.	.	mismappers(7),mismatches(2)	CTGGCCTATAGGAACAAGACATTTTCAGTAATGGAAGAAGGAGCTTCCAGGCTGGGGAAGATCATCgTTTCCAGTGGTAGCTTGACCTGAGATGATACCTGACCACCACTTCTGGGAAGGCCC...GGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAAgCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTgCAACAtCCTAGTGTCAtTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAG...AGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCG	out-of-frame	EEWQFLDQSQKVLYKEVMLENYINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL067	CHRNA7	RP11-624A21.1(19789),RP13-395E19.4(44038)	+/+	./+	15:32168815	15:32206264	3'UTR	intergenic	deletion/read-through	downstream	upstream	1	1	1	10	17	low	.	.	.	CTCAGATGGGCTGATAGATATCCTTGGCACATCCGTACCATCGGTCAGCAGGGCCACTGAGTAGTCATTTTGCCCATTAGCCCACTGCCTGGAAAGCCCTTCGGAGAGCTCCCCATGGCTCCTCACCACCGAGACAGTTGGTTTTGCATGTCTGCATGAAGGTCTAC|TCGTATGAATCTCTGGGTCATGGAGCAGCTCTACCCTGACACTGAAGCAGTGCTCTGGTCTGCTGCACCTGATTCTCAACCTCCTGAGTCAGCAGGCTGGCCAGGATATGTACTTCTCAC	.	.	.
TALL067	RP11-297D21.4	RP11-96D1.10	+/+	+/+	16:67486818	16:68226369	exon	exon	deletion	downstream	upstream	0	0	3	5	178	low	.	.	.	CCACTGCAGAGTACAAAGCTTTCAGGCCGCCTGCCTCATTAGCACTAATGGCTGCTCCCTTCCGCCCTGTGTCGTCAGGACTGTCTATGCCTGGTCTCATCAGCACAAGGCTGGG___TGaAC...|...AGACATGTCCCAGATTTCTGTTTCCCAAGGAGCAGGGGTGAGCAGGCAGGCTCCCCTCCCGAGTCCTGAGTCCCTGGATTTAGGAAGATCTGATGGGCTCTAACAGTGCTTACTGCAGCCTTGTGTCCACCACCAACTTCTCAGCATGTTTCTCTCCTTGGACCTTGGGTTTCCAACTCTGCAGCCTTCAGGTCTGGGGCCAGG	.	.	.
TALL067	RP11-297D21.4	RP11-96D1.11	+/+	-/+	16:67486818	16:68226369	exon	exon	deletion/5'-5'	downstream	upstream	0	0	3	5	178	low	.	.	.	CCACTGCAGAGTACAAAGCTTTCAGGCCGCCTGCCTCATTAGCACTAATGGCTGCTCCCTTCCGCCCTGTGTCGTCAGGACTGTCTATGCCTGGTCTCATCAGCACAAGGCTGGG___TGaAC...|...AGACATGTCCCAGATTTCTGTTTCCCAAGGAGCAGGGGTGAGCAGGCAGGCTCCCCTCCCGAGTCCTGAGTCCCTGGATTTAGGAAGATCTGATGGGCTCTAACAGTGCTTACTGCAGCCTTGTGTCCACCACCAACTTCTCAGCATGTTTCTCTCCTTGGACCTTGGGTTTCCAACTCTGCAGCCTTCAGGTCTGGGGCCAGG	.	.	.
TALL067	RP11-96H19.1	RP11-96H19.1(71518),RP11-618L22.1(22827)	+/+	./+	12:46470247	12:46947677	intron	intergenic	deletion	downstream	upstream	0	0	3	54	4	low	.	.	.	CCAAACCAAGCAAACCACGGGGAATGGAG___GTCATGTGAGCACACAGCATAAAGGCAGCTGCCCACAAGCCAGGAAGAGAAGCATCATCAGAAACCGACCATACTGGCTTCCTGATCTCAGAtTT...|...GGCCTATCTCCAGGGAGCAATGTATTAGTTACATGGATGTAGCCCAGAGGGAATTT?TGGAAATTTGGAGAACTGCATTCTAGAGACTCAAAACTGTGACTGCTGAGTGGACCATCTATGGGCAAGAGCAGAATCACTGAATACTGGAGGAGGGTTGCAAGGTGGCCTGGTTTCTG	.	.	.
TALL067	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	1	0	2	105	13	low	.	.	mismatches(1)	CTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GT...AAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCAT-CCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTGCAGCTACTGAAAGTTTAAAGTTTAAGTAAAAAAATGAATAGCTTTCTTCAG___CCTCAAGGAATAGGTTCTCCTAGTGTCTA	out-of-frame	GFATSLSIILSTLISYFWLQDFVPTr|wlyassssscs*	.
TALL067	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	119	154	low	.	.	.	ATTTTCTGTGTCTATGCTTAGTAAAAAATTGGGTGTATACCAGTGGCTGTCCCTAGTAAaTTTGATGACAGGAGTTGCTTTTGTACAG___TGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTT...GAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCAC	out-of-frame	ETKQSVWIRNIQL|asrnrfs*	.
TALL067	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	105	154	low	.	.	low_entropy(2)	AGTAATTTTGATGACAGGAGTTGCTTTTGTACAG___TGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCA...GGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTG...AAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAtGATC	out-of-frame	GFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL067	ARAP2	RNU6-573P(374421),ARAP2(77797)	-/-	./-	4:35982955	4:35870424	intron	intergenic	deletion/read-through	upstream	downstream	0	0	3	3	9	low	.	.	.	GCAACCACTACCTCTCAGGCTCAAGGGGTCCTCCCACCTCAGCCTTCCTAGTAGCTGGGACCACAGGTGTATGCCACCACACCCAG___CCACTGCACCCTTGTTGAGAACCATTGCTGGGGAGCTGGTGTGGTCATTTGGAGGTAAGAAGACACTGGCTATTTGTGTTGCTAGAGTTCTTCCACTGTTTTTTTTTTTTT...|...GATTACTTACTAATGGATGTAATTCCTGACACTTAGCTGGAGAAAAATTGCTTTATTGGGCCAGATAAACTTGCCAG___GATTGAGGCCATCAAGCTACAGATGGTCGTACAAATGGAACCCCAAATGAGCGCAACTCACAACTTCTACTGAG	.	.	.
TALL067	NECAP1	NECAP1(23137),CLEC4A(2724)	+/+	./+	12:8096312	12:8120908	3'UTR	intergenic	deletion/read-through	downstream	upstream	2	0	1	119	4	low	.	.	.	CCTGCTCCTGTCACGACACCAGCACCAACTCCAGTTTCTGTAAGCAATGACTTGTGGGGAGACTTCAGCACTGCCTCCAG___CTCTGTTCCAAACCAGGCACCACAGCCATCCAACTGGGTCCAGTT...GGACAATCTTTTTCATAGCTTCTCCATCACATTCAAGCTGGTTTATGTCACTCCCCTGTGTTGTTACTTGTACAGCCAAGAAAGTATCTGTTATCTCCTGCGTAGTACCAAG|GTTTGTTCAGGTAACTTGCATTGGCCAACAGAATCAGAGCAAATACAACGTACACCTTATCTGAATAAAGGATGCTACTACATGGTTCAGC...CCAGAATGAGAAAACACTTGGAGAGGGGCCAAGCAGAGTTGCAGTCAACTCCAAGGTGGCCCTAAGCACAAGTGTAATGTAAGTGAGAAATACATGTTTGTTGTTGTAAGCCACTTGGATTTTGG	.	.	.
TALL067	BUB3	RP11-338O1.3(1249),RP11-282I1.1(31615)	+/+	./+	10:123163820	10:123324835	CDS	intergenic	deletion/read-through	downstream	upstream	0	0	3	119	2	low	.	.	.	TTGCAATAGCGTCATCATATATGTATGAAATGGATGACACAGAACATCCTGAAGATGGTATCTTCATTCGCCAAGTGACAGATGCAGAAACAAAACCCAA___G...|...CCAaGATATAGATGTAAGGCTGGAGGTGGAGCAGCTGCTCGGCGATCTGTGGTGACAAGAGTGGTGATGAGAGGCACATGCTGAGGATGGCTGAGCAGGAGGACAGAGGAGC	.	.	.
TALL067	MALRD1	PLXDC2	+/+	+/+	10:19790186	10:20001771	exon	intron	deletion/read-through	downstream	upstream	0	0	2	4	7	low	.	.	mismappers(2)	ATGACTCACATCACAGTTGCAGTCTTGTGTTTTCTTGCAAACAGAAAGGTACCAATAAG___AGGAGAAATGTGATGCTCAGAGGGTGTGGCTGACAAGCTCCAGGACACAG...|...ACAGATTGGCAGTATGGAGTTACTCAGGCCTTCCCTCACACAGAGGAGGAGGTGGAAGTTGATTCACACGCGTACAGCCACAGGTGGAAAAGAAACTTGGACTTTCTCAAGGCGGTAGACACGAACCGAGCAAGCGTCGGCCAAGACTCTCCTGAGCCCAGAAGCTTCACAGACCTGCTGCTG	.	.	.
TALL067	CUX1	FBXL13	+/+	-/+	7:102257548	7:102957155	3'UTR	intron	deletion/5'-5'	downstream	upstream	0	0	2	85	0	low	.	.	mismappers(1)	AAAAAATCCCGTGTATTCTGGAGATGTGAGAATTCACCCAAAATTCTTAAAACATTGGAGAATAGCTTGTTATAAAATAAAAGTGGGGGTAAAAAGAAGGTGGTTTTCCCCACATCCCTTTGC...|...CAAAACGGC	.	.	.
TALL067	ARAP2	RNU6-573P(378157),ARAP2(74061)	-/-	./-	4:35967821	4:35874160	intron	intergenic	deletion/read-through	upstream	downstream	0	0	2	4	5	low	.	.	mismappers(2)	CACAAATTTAGAAGTTTC[t]TTTTTTTGCTTTGCTATATACATGGACAATAATCCTGTACCTTGCCTGTGATCTTCCAGGT...|...AGCCCAGAGAGTTTACAAGACTTTACTTCCTGAATGAAGGTCACAATGCAA___ATTACTTACTAATGGATGTAATTCCTGACACTTAGCTGGAGAAAAATTGCTTTATTGGGCCAGATAAACTTGCC	.	.	.
TALL067	PPP2R2D	BNIP3(14311),RP11-45A17.3(496)	+/.	./.	10:131951350	10:131996242	intron	intergenic	deletion/read-through	downstream	upstream	0	1	1	5	2	low	.	.	.	.	.	.	.
TALL067	MFSD5	ST3GAL4-AS1	+/+	-/+	12:53252931	11:126346030	CDS	intron	translocation/5'-5'	downstream	upstream	0	0	2	35	16	low	.	.	.	CGGGGCAGCAG___GTCGTCCGGGGGCCCACCATGCTGGTGACTGCCTACCTTGCTTTTGTAGGCCTCCTGGCCTCCTGCCTGGGGCTGGAACTGTCAAGATGCCGGGCTAAACCCCCTGGAAGGGCC...|...CCTTTGAGGAGTTCCCCAAAAAACCAAACTTGGAAGCTTTCAGGAAATTATCTATACAGGTTTCTGATGGCACTTCCTCCTTCCAGCAGTGAGGTCACACCTCCCTGTGAGTCAGTCAACCCT	.	.	.
TALL067	ZNF215	ZNF214	+/+	-/+	11:6955782	11:7000694	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	1	1	0	29	11	low	.	.	.	GAAATACCAAGGAAGACTATTTTTG___ACATGAAGAGTATTTCTGGAGAAGAATCATCCCATGGAGTGATTATGACAAGGCTTACCGAAAGTGGtCACCCTTCTTCAGATGCCTGGAAAG|AATTTCTCTTCTGTGTGGACTCTTTGATGATTGTGAAGACTAGAGATCTGGCTGAAGCTCTTACCACATGCATTACAGCTATAAGGTACCTCCCCTATGTGAACTCTCTGATGgAAGTGAACTCCGG	out-of-frame	EIPRKTIFDMKSISGEESSHGVIMTRLTESGHPSSDAWK|eflfcvdslmivktrdlaealttcitairylpyvnslmevns	.
TALL067	UPP1	UPP1	+/+	+/+	7:48106359	7:48104153	exon	intron	duplication	downstream	upstream	2	0	0	24	25	low	.	.	.	AACAGGGtTCAATGAAACACATCATGGTATATGGTTCAGTGACAGACAACAGTGGGAAATCGCCGTGAATGGAAGCAAGAAATATGGGACAAAGTACTTGAAGGTTCCTGGCCATTTTTATTTT...TTCGAAATGGAGTTTGCTCTTTTTGCCCATGCTG|GGTTGCAGTGAGCCAACATCGCGCCACTGCACTTCAGCCTGGCAACAGAGCGAGACTCCATCTCAACAACAACAACAACAAACAAAC	.	.	.
TALL067	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511437	7:23314098	exon	intron	deletion	downstream	upstream	0	0	2	185	0	low	.	.	mismappers(1),mismatches(4)	.	.	.	.
TALL067	TTC33	AC108105.1(292851),SNORA63(41697)	-/-	./-	5:40728344	5:40613266	intron	intergenic	deletion/read-through	upstream	downstream	0	0	2	42	7	low	.	.	.	GTCCAGCAAAATCCACATTCATGGGAGTCTTGGCAGACTTTGGGACGTGCTCAACTTGGTTTAGGAGAGATAATCCTGG...|...AAAAAGTTCCCAGGAGCCATCGAGTTTGGGAATCACTGGGCTAGAGTCAAACCAAAACTCAACTTCCTGGCCTTATTTTAGATGTTACTTTTTTGTTTCACTTCCATTGGGCATGCCATTCCTCT	.	.	.
TALL067	LINC00977	PVT1	-/-	+/+	8:129241177	8:128096518	splice-site	splice-site	inversion	upstream	upstream	0	1	0	274	85	low	.	.	.	GGCTGAGGCTCCCTCTTGCCGGCTCCTGCTCTTGAAACAgACCCAAGTGCAATGTTCAAT|AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAACGCTTGGAGGCTGAGGAGTTCACTGAGGCTACTGCATCTTGAGACTCAGGATGAAGACCCAGCTTGGGGCTGTCAAAG___GTTTTTT	.	.	.
TALL068	KMT2C	GALNT11	-/-	+/-	7:152309966	7:152101383	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	66	50	3	238	224	high	.	.	duplicates(9),low_entropy(15),mismappers(3),mismatches(13)	CTGCGCTTTTTGTTACTGTGGGGAAAAAAGTTCCTTAGGACAAGGAGACTTAAAACAATTCAGAATAACGCCTGGATTTATCTTGCCATGGAGAAACCAACCTTCTAACAAGAAGGACATTGATGACAACAGCAATGGAACCTATGAGAAAATGCAAAACTCAGCACCACGAAAACAAAGAGGACAGAGAAA___AGAACGATCTCCTCAGCAGAATATAGTATCTTGTGTAAGTGTAAGCACCCAGACAGCTTCAGATGATCAAGCTGGTAAACTGTGGGATGAACTCAGTCTGGTTGGGCTTCCAGATGCCATTGATATCCAAGCCTTATTTGATTCTACAG___GCACTTGTTGGGCTCATCACCGTTGTGTGGAGTGGTCACTAGGAGTATGCCAGATGGAAGAACCATTGTTAGTGAACGTGGACAAAGCTGTTGTCTCAGGGAGCACAGAA|GGCTCAAGACGGCGTGTAGCAAACAGAAGGTGCTCAACAAATGTCTGTCTGTGGAATGACTGACCACATGCACGAAAAGCCTTTGATGGAAAAAAAACAATGAAAGAGAAAAGTGAAATGAGAGTAAAATTCTTCACTGATGTTAATTCCTATTTGCCATGAATCCAATCAATAAACATTTAGAACAAACTTATACTCAGGTTATTTAATTAGCACCCTACTCTGCTTCCCCAGGTGATCTG...CCAGGACTCTGTTGGTACATCTCAGACCATGTGGCTTCACATATAATACAAGTGGAAATCTGTCTCAAGTTTCCTAGTATGCTGAATAAAGACGCTGCATTGGGAAATATGAACCCCGTCCTCGT	out-of-frame	CAFCYCGEKSSLGQGDLKQFRITPGFILPWRNQPSNKKDIDDNSNGTYEKMQNSAPRKQRGQRKERSPQQNIVSCVSVSTQTASDDQAGKLWDELSLVGLPDAIDIQALFDSTGTCWAHHRCVEWSLGVCQMEEPLLVNVDKAVVSGSTE|gsrrrvanrrcstnvclwnd*	.
TALL068	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	14	18	3	66	58	high	.	.	duplicates(2),low_entropy(3),mismatches(3)	CTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGG...CAGCATTCCCAGACAGGCACGCAAGACTCCTCTGGGCCCGAGTGGGCTGAATCCCATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGACGGTGGGACAGACGGGGA	out-of-frame	LGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL068	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	10	10	2	49	54	high	.	.	duplicates(1),mismatches(3)	AG___...AAGACTGATTTTTTTTTTT...___...CTG?CTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCaAGCACAC	.	.	.
TALL068	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	3	15	0	53	24	high	.	.	low_entropy(1),mismatches(5)	CATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCA...GTCTGGGGCTCATGTGCAGGTTAACAAAGGCAAACTCATGTCACGGAGGTCTCGTGTACAGACCATTTC	.	.	.
TALL068	KMT2C	Y_RNA(18490),RP11-796I2.1(15478)	-/-	./-	7:152194009	7:151934908	splice-site	intergenic	deletion/read-through	upstream	downstream	10	4	2	45	27	high	.	.	low_entropy(1),mismatches(2)	AGATGATCTAGCAAAATCAGTTGATCATTCAG___ATATTGGTCCTGTCACTGATGATCCTTCCTCTTTGCCTCAGCCAAATGTCAATCAGAGTTCACGACCATTAAGTGAAGAACAGCTAGATGGGATCCTCAGTCCTGAACTAGACAAAATGGTCACAGATG___GAGCAATTCTTGGAAAATTATATAAAATTCCAG___AGCTTGGCGGAAAAGATGTTGAAGACTTATTTACAGCTGTACTTAGTCCTGCGAACACTCAGCCAACTCCATTGCCACAGCCTCCCCCACCAACACAGCTGTTGCCAATACACAATCAGG|CTCTCACCAAACTGGCTTAGAGACTTCACTAGGAAGATGTGTCCTCCGCCATCCCAGAATTCTACAG___CTCGTGAAAGGTAAAACAGACCATCACTCCAACACAGTGCACCAAAGTCGCAACGTATGGTGTTAATCATTTAAGAAAGTG...___GGAAGAATGCCGGTTTGGTTCAGATGAAGGTTCTGTATGAAGCCAGGTTGCAC...CCGGGCCCGCTCCCTCTGtAGGCTGCATGGGAGGGTTCTCCCCGCCTCCTCCAGCTCCTCGTGCTGCAGGCAGCCCCTGGCGTCCCTCCGCTTGCAGAGCATCATGCCAATCTCCACGTCTG	out-of-frame	DDLAKSVDHSDIGPVTDDPSSLPQPNVNQSSRPLSEEQLDGILSPELDKMVTDGAILGKLYKIPELGGKDVEDLFTAVLSPANTQPTPLPQPPPPTQLLPIHNQ|altkla*	.
TALL068	CPA4	CPA5	+/+	+/+	7:130312122	7:130346407	splice-site	splice-site	deletion/read-through	downstream	upstream	5	6	1	123	26	high	.	.	duplicates(1),low_entropy(2),mismappers(1),mismatches(1)	GTGCATGACGTCTCCCTTCTCAGGATAGGTGAAGACGGTGGTGCCTTTACTAGATTCCTAGTGG___...CACTCCACGGATTCCCC...___...TTCCCAGGACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGTGTCGGGCACTGAGTACCAAGTGGGTCCCACCTGCACCACTGTCT|CCTCTAGGTGCTGTGCTGTCCTGAGGCCTGGGCCATGGTGCCCAAGGAAAGCCCCTGAAGCTCACCAGGAGGAAGAAGCATGCAGGGCACtCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCTTCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGG___GGACCAGGTTCTTCGAGTCCTGGCCAAAGATGAGAAGCAGCTTTCACTTCTCGGGGATCTGGAGGGCCTGAAACCCCAGAAG___GcGG	out-of-frame	sqDKVARLAAKALASVSGTEYQVGPTCTTV|ssrccavlrpgpwcprkapeahqeeeacralleagralghppwtgghswssalswqqlwak*	.
TALL068	CPA4	CPA5	+/+	+/+	7:130312122	7:130359589	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	123	19	low	.	.	.	AAGTGGGTCCCACCTGCACCACTGTCT|GTGCTGCTGGATGAGGAAAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCACACCCTGGAGGAG___ATATATAGCTGGATTGACAACTTTGTAATGGAG	out-of-frame	VGPTCTTV|caag*	.
TALL068	ARFGAP1	LINC00176	+/+	+/+	20:63285713	20:64037927	splice-site	exon	deletion	downstream	upstream	2	2	1	237	26	high	.	.	mismatches(2)	AGGCTGAGCTCCTTTCTCAGCAGCTTCTTCCTATGGCCCCAGCCTCCGTGCCCTCTTCCCTCCAGGGGGGACTCGGTGCCTGCCTGGGGAGGAAGGAGAGGCGTTGCAG___GCGTCCGAGCTGGGCC...GAGAACGTCCTCAAGCCTGCGCAGGAGAAG___GTGAAGGAGGGAAAGATTTTTGATGATGTCTCCAGTGGGGTCTCTCAGTTGGCGTCCAAG|GTACCCCCTAAGCCTGCACTCTGGGCGCTCCTGCTGGCGCTGCTGGGGACCGCGCCAAGCCGCGCCTATTCCCCGGCCTGCAGCGTCCCCGACGTGCTCCGCCACTATCGCGCCATCATCTTCGAGGATCTGCAGGCCGCCGTGAAGTGGGGCGGGGCGGGGGCCGAAAAGAaCAGGCCAGGCTCCAGACACTTTCgTTTCATACAGAAAAACCTGAC	out-of-frame	ENVLKPAQEKVKEGKIFDDVSSGVSQLASK|vppkpalwalllallgtapsrayspacsvpdvlrhyraiifedlqaavkwggagaeknrpgsrhfrfiqknl	.
TALL068	RP11-80H8.4	SLC9A9	+/+	-/+	3:143123576	3:143565730	splice-site	intron	deletion/5'-5'	downstream	upstream	3	2	0	89	5	high	.	.	mismappers(1)	TTCGTTGGTTTAGCAAAGTGACAGAAGTATCTATTTGGAGTGTTTTTCTGACCCTGACACGGTATGTGGAGGTGGATGAAAGCAGCGAAGTTTCATCTGAGAACC|CTTGGAAAACACTCACTTCACCTCATTTGTTGGTGAATTGTTGGTTAAGTTGGATTCACCTGGTTCTGTCAATATAAAGCAAACCAGTTTTAAG___AACAGAATGTATTGCCAAATGGAGATTCCTTTGGGGACAAAATGATGAAAACCTA	.	.	.
TALL068	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	9	11	2	82	23	medium	.	.	mismatches(3)	CGAGAGGCCGCTTGCGCCGGGTCCTTCTTCaCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCAC	.	.	.
TALL068	RP11-554D15.1	EEF1A1	+/-	-/-	6:74234129	6:73519473	intron	CDS	deletion/3'-3'	upstream	downstream	0	1	14	0	65535	medium	.	.	duplicates(170),inconsistently_clipped(2),low_entropy(59),mismappers(20),mismatches(47)	ACTTGGATATAC|TGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGGACATCTCAG___GCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTcGA	.	.	.
TALL068	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	6	6	1	26	19	medium	.	.	mismatches(1)	AGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG___T	.	.	.
TALL068	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	5	4	0	206	64	medium	.	.	mismappers(1),mismatches(1)	GCTCACACCAAAaCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGAAACTAGCCTGGCCAACGT	.	.	.
TALL068	SH2B3	ERP29	+/+	+/+	12:111418877	12:112022150	splice-site	splice-site	deletion	downstream	upstream	5	0	1	35	1340	medium	.	.	.	TTCGCCGCAGCCTCCGCCACATCTTCCGCCGCCGCTCGGCCGGGGAGCTGCCAGCGGCCCACACCGCTGCCGCCCCCGGGACCCCCGGAGAGGCTGCTGAGACCCCCGCCCGGCCTGGCCTGGCCAAGAAGTTCCTGCCCTGGAGCCTGGCCCGGGAGCCGCCACCCGAGGCGCTGAAGGAGGCGGTGCTGCGCTACAGCCTGGCCGACGAGGCCTCCATGGACAGCGGGGCACGCTGGCAGCGCGGGAGGCTGGCGCTGCGCCGGGCCCCGGGCCCCGATGGCCCCGACCGCGTGCTGGAGCTCTTCGACCCACCCAAG|ATTATGGTGACAAGCTGAACATGGAGCTGAGTGAGAAATACAAGCTGGACAAAGAGAGCTACCCAGTCTTCTACC...ACTTTGAGAACCCAGTCCCATACACTGGGGCAGTTAAGGTTGGAGCCATCCAGCGCTGGCTGAAGGGGCAAGGGGTCTACCTAGGTATGCCTGGTTGCCTGCCgGTATACGACGCCCTGGCCGGG	out-of-frame	RRSLRHIFRRRSAGELPAAHTAAAPGTPGEAAETPARPGLAKKFLPWSLAREPPPEALKEAVLRYSLADEASMDSGARWQRGRLALRRAPGPDGPDRVLELFDPPK|imvts*	.
TALL068	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	12	105	medium	.	.	.	CCCGGGGCTCCATCCCCGTCTCCCCCGCCCCCTCCGGGCCCGTCTTCTGCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCAC	.	.	.
TALL068	RANBP10	ATP6V0D1	-/-	-/-	16:67805428	16:67453715	splice-site	splice-site	deletion/read-through	upstream	downstream	4	4	1	23	156	low	.	.	duplicates(2),low_entropy(2),mismatches(2)	ACAACTACATTGGTCTCTCCCAGGGCAACCTCCGCGTCCACTACAAAG___GTCATGGCAAAAATCACAAAGATGCGGCCTCAGTGCGTGCCACCCACCCCATACCTGCTGCCTGTGGCATTTATTACTTTGAAGTGAAGATTGTCAGCAAAGGAAGAGATGG|ACTTGAAACTGCATCTGCAGAGCACTGATTATGGTAACTTCCTGGCCAACGAGGCATCACCTCTGACGGTGTCAGTCATCGATGACCGGCTCAAGGAGAAGATGGTGGTGGAGTTCCGCCACATGAGGAACCATGCCTATGAGCCACTCGCCAGCTTCCTAGACTTCATTAC___TTACAGTTACATGATCGACAACGTGATCCTGCTCATCACAGGCACGCTGCACCAGCGCTCCATCGCTGAGCTCGTGCCCAAGTGCCACCCACTAGGCAGCTTCGAGCAGATGGAGGCC	out-of-frame	NYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDg|letasaeh*	.
TALL068	RANBP10	ATP6V0D1	-/-	-/-	16:67805428	16:67444706	splice-site	splice-site	deletion/read-through	upstream	downstream	1	3	0	23	156	low	.	.	duplicates(1),low_entropy(1)	CCCAGGGCAACCTCCGCGTCCACTACAAAG___GTCATGGCAAAAATCACAAAGATGCGGCCTCAGTGCGTGCCACCCACCCCATACCTGCTGCCTGTGGCATTTATTACTTTGAAGTGAAGATTGTCAGCAAAGGAAGAGATGG|TTACAGTTACATGATCGACAACGTGATCCTGCTCATCACAGGCACGCTGCACCAGCGCTCCATCGCTGAGCTCGTGCCCAAGTGCCACCCACTAGGCAGCTTCGAGCAGATGGAGGCCGTG...ACACGCCTCTTG___CGGC[t]TTTTTTCCAGGACTGCATTTCAGAGCAGGACCTTGACGAGATGAACATCGAGATCATCCGCAACACCCTCTACAAG___GCCTACCTGGAGTCCTTCTACAAGTTCTGCA	in-frame	QGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDg|YSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEA	.
TALL068	TMSB15B	TMSB15B(10013),H2BFWT(34422)	+/+	./+	X:103962723	X:103976725	splice-site	intergenic	deletion/read-through	downstream	upstream	0	5	2	22	71	low	.	.	.	AATCAGAGAGGGCTGGGGCGGCGCCTGCTAGAAGGCTTAGCACTGCAGGGCTCTGGGCGGGAAGGCTAACCTGGTGCGGAGCCAGCCTGGGTCTCAGCCCCGCGTACGGCCTTTCACGAGTCTTCAAGCCTTCAG|AACTTCATTATGTGCGATATGGCAAGAGAGAAAGTGAATACGCTGATATAAGAAGCAAG___AAACCTTCCTTCCTTCCAGATGTGTGTCAGTAGAATTACAGAGTGTCCACGGAAACAGCTCATGCCCTAGTGTACAGTGGTGCAGCCAATGAGTGACCTGAAGTCTATGAGCAACACTCATTGTCCCAATGTGGGACGAGTGACCGAAGCTGAACCCACAACAGCCTTCCTGTGATATTCCACGTGGTGGTTAAAGGCATGGCGATGTGATTCTTTACCTGATGTTTTTGTTTGCAGTGTTTGTAAT	.	.	.
TALL068	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	4	3	0	8	21	low	.	.	.	GCCGCCCGCGCACTCCCGAGGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAGGTAAGTTTATTTATATTTAGGGGGGTACATTTATGGCGGTACCAAAATTTTTATGAC	.	.	.
TALL068	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	4	2	1	648	19	low	.	.	.	GCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTG...GGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATGGGCCACCATGTGCCAGCACCATGCCTCCA	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdh	.
TALL068	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	4	3	0	50	21	low	.	.	duplicates(1),mismappers(3)	TGTCATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGT...AAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAG	out-of-frame	KPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL068	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	5	0	143	279	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	CCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___...TGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAAT	out-of-frame	fgGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL068	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	10	279	low	.	.	duplicates(1),read_through(5)	GAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATaTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAG	out-of-frame	KKTQEISKGKRKEDSLTASQRKQSSGGQKyESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL068	CD1B	CD1C(4422),CD1B(29899)	-/-	./-	1:158329852	1:158298052	splice-site	intergenic	deletion/read-through	upstream	downstream	1	5	1	2011	11	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	CCATAGTAAGCTTCCTGAGGGGAGCTCTAGGAGGATTGGATTTCCTGAGTGTCAAGAATGCTTCATGTGTGCCTTCCCCAGAAGGTGGCAGCAGGGCACAGAAATTCTGTGCACTAATCATACAATATCAAGGTATCATGGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|ATTTTTTGCCATCCTTTAGTTTTGGCCTATGGGTGTCCTTGCATGTGAGATGGGTCTCTTGAAGATAACTTACAG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCTGGGCAATGGAATGTGT	out-of-frame	IVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQRQ|dflpsfsfglwvslhvrwvs*	.
TALL068	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	1	37	9	low	.	.	mismatches(1)	ACAACAAGGTTTCCAGCATGATTATTGCAATGACCAATGGAACAATGATGAAACATCCATTTTTGGACACTCTCAAAGAA___CTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAAAGGAAACAAACACCCAATAAACTCGGAGTGGC	.	.	.
TALL068	SNORD3B-2	CCDC144B	-/-	-/-	17:19063925	17:18595090	exon	intron	deletion	upstream	downstream	5	0	0	3358	1326	low	.	.	duplicates(113),low_entropy(43),mismatches(150)	GTgAAGACTATACTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAG___...CGCG___CGTTTTCTCCTGAGCGTGAAGCCGGCTTTtTGGCGTTGCTTcGCTGCAACTGCCGTCAGCCATTGATGATCGTTCTTCTCTCCGTATTGGGGAGTGAGAGGGAGAGAACGCGGTCTGA|GTAAAAA??AAAAAAAaAAGA...AAAAAAAAAAAAAAAAAAAAAAAGAAAAaaAAAAAtAgaAAA...GAGGAAGAAATGG...AAAAAAAAAATAATAAaAAAAcAAAcAAAatAAaaAAA...AAAAAAAAAAAAAAAAAAAAAAAGAT...AAgTAAATAAATAAAAAAAAA...AAAAAATAAAAAAAATAAG...AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA	.	.	.
TALL068	SNORD3B-1	CCDC144B	-/-	-/-	17:19063925	17:18595090	exon	intron	deletion	upstream	downstream	5	0	0	3358	1326	low	.	.	duplicates(113),low_entropy(43),mismatches(150)	GTgAAGACTATACTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAG___...CGCG___CGTTTTCTCCTGAGCGTGAAGCCGGCTTTtTGGCGTTGCTTcGCTGCAACTGCCGTCAGCCATTGATGATCGTTCTTCTCTCCGTATTGGGGAGTGAGAGGGAGAGAACGCGGTCTGA|GTAAAAA??AAAAAAAaAAGA...AAAAAAAAAAAAAAAAAAAAAAAGAAAAaaAAAAAtAgaAAA...GAGGAAGAAATGG...AAAAAAAAAATAATAAaAAAAcAAAcAAAatAAaaAAA...AAAAAAAAAAAAAAAAAAAAAAAGAT...AAgTAAATAAATAAAAAAAAA...AAAAAATAAAAAAAATAAG...AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA	.	.	.
TALL068	SNORD3B-2	CCDC144B	-/-	-/-	17:19063925	17:18595090	exon	intron	deletion	upstream	downstream	5	0	0	3358	1326	low	.	.	duplicates(113),low_entropy(43),mismatches(150)	GTgAAGACTATACTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAG___...CGCG___CGTTTTCTCCTGAGCGTGAAGCCGGCTTTtTGGCGTTGCTTcGCTGCAACTGCCGTCAGCCATTGATGATCGTTCTTCTCTCCGTATTGGGGAGTGAGAGGGAGAGAACGCGGTCTGA|GTAAAAA??AAAAAAAaAAGA...AAAAAAAAAAAAAAAAAAAAAAAGAAAAaaAAAAAtAgaAAA...GAGGAAGAAATGG...AAAAAAAAAATAATAAaAAAAcAAAcAAAatAAaaAAA...AAAAAAAAAAAAAAAAAAAAAAAGAT...AAgTAAATAAATAAAAAAAAA...AAAAAATAAAAAAAATAAG...AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA	.	.	.
TALL068	IGF2BP3	EEF1A1P6	-/-	-/-	7:23332159	7:22510788	intron	exon	deletion	upstream	downstream	0	0	4	2	898	low	.	.	low_entropy(1),mismatches(4)	AGTTGATATGGTT...|...GTTtCTtGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTAT	.	.	.
TALL068	RANBP17	NPM1	+/+	+/+	5:171284956	5:171400904	intron	CDS	deletion/read-through	downstream	upstream	0	0	4	0	3	low	.	.	low_entropy(4),mismappers(1),mismatches(4)	ACTCGTTTCT...|...ATCATCAACACCAAGATCAAAA___GGACAAGAATCCTTCAAGAAACAGGAAAAAACTCCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAA	.	.	.
TALL068	SH3D19	LRBA	-/-	-/-	4:151102947	4:150971574	exon	intron	deletion/read-through	upstream	downstream	0	0	3	65535	0	low	.	.	mismappers(2),mismatches(9)	AATTTATTGACCACTTCTTTCAAGTCATTTGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTCCGGATTTGGCGGACCTGTTGGTGCTGAGCATAAGAGGTCTTCCGTATCTGATTGTTGCGTTTTT...|...GGAACCAAGTAT	.	.	.
TALL068	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	72	59	low	.	.	.	TTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGAC	in-frame	FAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWG	.
TALL068	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	57	59	low	.	.	mismatches(1)	ACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCT...AACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCC	out-of-frame	TWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL068	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69087206	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	0	1	2	49	7	low	.	.	duplicates(1),inconsistently_clipped(1),mismatches(2)	GTCATCTGGGTCAACCTGTTTCTGGCCCTGATTCTGGAG___AACTTCCTTCACAAGTGGGACCCCCGCAGCCACCTGCAGCCCCTTGCTGGGACCCCAGAGGCCACCTACCAGATGACTGTGGAGCTCCTGTTCAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATA	out-of-frame	VIWVNLFLALILENFLHKWDPRSHLQPLAGTPEATYQMTVELLFs|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL068	EEF1A1P6	FAM126A	-/-	-/-	7:22511435	7:22895870	exon	intron	deletion/read-through	downstream	upstream	0	0	3	175	0	low	.	.	low_entropy(2),mismappers(2),mismatches(9)	...CATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAG...GACTGCATCCTACCACCAACTCgTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAAC|...ATTTCCTTATGT	.	.	.
TALL068	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87036400	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	2	0	320	5	low	.	.	.	CTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GTTTCTATCAACACCACGAGAGAAACACACCCTCCAGCCTGGGTCCCAGAATGAGGCAGGTGAGGCAGAACGGCAGCAGAACAGCCGGCTACACATCTACAGCCTAAAGCAGAGCTGCCTGGGCCAATGCTATGCCT___CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCC	out-of-frame	LKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|gfyqhherntpsslgprmrqvrqngsrtagytsta*	.
TALL068	AC004053.1	EEF1A1P9	+/.	+/.	4:104679591	4:105485312	intron	exon	deletion	downstream	upstream	0	0	2	1	52	low	.	.	low_entropy(2),mismappers(1),mismatches(2)	.	.	.	.
TALL068	ST6GALNAC3	RP4-706A16.3	+/.	+/.	1:76615299	1:77129240	intron	exon	deletion	downstream	upstream	0	0	2	0	69	low	.	.	mismappers(1),mismatches(3)	.	.	.	.
TALL068	UGT3A2	LMBRD2	-/.	-/.	5:36071395	5:36113204	5'UTR	intron	deletion/read-through	downstream	upstream	1	1	0	3	1	low	.	.	mismappers(1)	.	.	.	.
TALL068	NRIP1	AF127936.9	-/-	-/-	21:15043538	21:14924764	5'UTR	intron	deletion/read-through	upstream	downstream	0	0	2	7	1	low	.	.	.	CCGGGGCGCCGGGCCAGGACGGGGCGGCAGGCGCCTTCGCGGACCGAGCCTGACGGAGCCGGAGGCTGGGAGCCGCGGCGGCCTGGG___GAAGTGTTTGGATTGTGAGCTATTTCAGAACTGTTCT...|...AGAATCTATCCCCAACAAATGGGGGAAACATTTGGAATGGAAGCTTATCTTTCAAATGTGGAAGTTCTCATCACTCCTGGAAGTGAGTAGCTACCTAGCACT	.	.	.
TALL068	NRIP1	AF127936.9	-/-	-/-	21:15014344	21:14857708	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	7	6	low	.	.	read_through(1)	ATTTTAACATTTGGGAGAAACACAGCCAGAAG___ATGCACACTTGACTGAAGGAGGACAGGGAATCTGAAGACTCCGGATGACATCAGAGCTACTTTTCAACAGCCTTCTCAATTTTCTTTCTC...AAGCAGAGGCTCAGAGCTTGGAGACAGACG|ACTCCTGCCCCTGCCACGAGAACACACCCTTTCCAGTTTGCTGGAGAAATATAAGAGAAGTCCAGTGAAAGAGAGCTGAGTTTCCCCAATGATGC	.	.	.
TALL069	FXR1	GFPT2	+/+	-/-	3:180912736	5:180301608	splice-site	splice-site	translocation	downstream	downstream	0	2	0	58	1	medium	.	.	.	CGCGGCTCTAACGGGGCTTTCTACAAG|GTTGACTTCCCCAGAAATCTGGCCAAGTCTGTAACTGTGGAATGAGGCTGAGACCGTGACAAGACCATCACCACCTTTCATCTGATTCCAGACCTGTCCCAACAGCAGGGATGCTACATGGGAAGAGAAGTGGACATCCCACATGTT	in-frame	RGSNGAFYK|VDFPRNLAKSVTVE*	.
TALL069	ZNF638	RNF166	+/+	-/-	2:71331865	16:88699732	splice-site	splice-site	translocation	downstream	downstream	0	2	0	9	50	medium	.	.	.	GTTTTCGGCGTCGAGACTGGAGGCTGAGTGCTAAACTGTGTGGGGCGCGGATGGGATCCAGCTGTTAGTCGG|GTGACCCTGGCAAAGATGAGAGTGCACATTTCGTCCTGCCTGAAGGTCCAGGAGCAGATGGCCAACTGCCCCAAGTTCGTCCCCGTGGTGCCCACATCACAGCCTATCCCCAG___CAACATCCCCAACAGGTCCACCTTCGCCTGCCC	.	.	.
TALL069	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	18	0	40	31	low	.	.	mismatches(2)	ACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCT	.	.	.
TALL069	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853422	18:48038793	exon	intron	deletion/read-through	downstream	upstream	0	0	9	62	0	low	.	.	low_entropy(2),mismatches(26)	...CCTTGACgTTGACAATCGAGTAGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGGGTATACTACGGtCA|...GACCTAGTCT	.	.	.
TALL069	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	6	6	low	.	.	duplicates(1)	CCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTC...AGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAG	out-of-frame	SREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplse	.
TALL069	ZDHHC14	SYNJ2	+/.	+/.	6:157555184	6:158095584	intron	intron	deletion	downstream	upstream	0	0	2	1	12	low	.	.	.	.	.	.	.
TALL069	HERC3	FAM13A	+/+	-/+	4:88523615	4:88728493	exon	3'UTR	deletion/read-through/5'-5'	downstream	upstream	0	0	2	155	105	low	.	.	.	TTCATATCTGAG___CGGCTTCTTGGAGAGCGGGCACACCAGGAACTCCAGCAGCGCCGGATCGAAGTCGCGGGGCGGCTCCTCAGTCTTCTTGCCCCGGTCGGCCAAAGGCCGCGACCCCGACGCGT...|...CTCACCGCAGCT	.	.	.
TALL069	RP11-429O1.1	RP11-750B16.1	+/.	+/.	17:52522011	17:53106236	intron	exon	deletion	downstream	upstream	0	0	2	1	114	low	.	.	low_entropy(2),mismappers(1),mismatches(10)	.	.	.	.
TALL070	TCF7	SPI1	+/+	-/-	5:134138164	11:47360040	splice-site	splice-site	translocation	downstream	downstream	38	35	15	112	205	high	.	.	duplicates(8),mismatches(9)	GGCGGGAACACGCTGCGCAGAGACTCTTCCCGGACAAACTTCCAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG___CACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACATCCCACCCCTGCACCTGCGGACATCAGCCAGAAGCAAG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCACTGGAGGTGTCTGACGGCGAGGCGGATGGCCTGGAGCCCGGGCCTGGGCTCCTGCCTGGGGAGACAGGTGGGGCACCTGGCCCTCCACCCTGGCCCCGACC	in-frame	REHAAQRLFPDKLPEPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLHKANQPPHGVPQLSLYEHFNSPHPTPAPADISQKQ|dHYWDFHPHHVHSEFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGGAPGPPPWPR	.
TALL070	TCF7	SPI1	+/+	-/-	5:134116033	11:47360040	splice-site	splice-site	translocation	downstream	downstream	2	1	9	71	205	high	.	.	duplicates(1)	CAGAGCCCCTGGAGGACG___GCCTGAAGGCCCCGGAGTGCACCAGCGGCATGTACAAAGAGACCGTCTACTCCGCCTTCAATCTGCTCATGCATTACCCACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCCCCGCTG|ACCATTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTCGAGAGCTTCGCCGAGAACAACTTCACGGAGCTCCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGATACCCCCATGGTGCCACCCCATCCCAGTCTTGGCCACCAG___GTCTCCTACCTGCCCCGGATGTGCCTCCAGTACCCATCCCTGTCCCCAGCCCAGCCCAGCTCAGATGAGGAGGAGGGCGAGCGGCAGAGC	out-of-frame	EPLEDGLKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPL|titgtstpttctassrasprttsrssracsprscssstatwswsrctssippwchpipvlatrsptcpgcassthpcpqpspaqmrrrasgr	.
TALL070	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97869813	intergenic	splice-site	deletion/read-through	upstream	downstream	3	12	3	47	39	high	.	.	duplicates(4)	CAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAA	.	.	.
TALL070	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	3	6	1	17	20	medium	.	.	duplicates(1),low_entropy(1),mismatches(3)	CGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGCGGGGGGGGaAAgactgatTTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACC	.	.	.
TALL070	FAM111A	RBM27	+/+	+/+	11:59148953	5:146254943	splice-site	splice-site	translocation	downstream	upstream	0	2	0	20	11	medium	.	.	.	GCTGTAAGAAGCAGAGGTCACGGAAGCACTCAGTCAATGAAAAATGTAATATGAAAATCGAGCACTATTTTTCTCCG|ATACATATGAACCAGATGGTTACAACCCAGAAGCTCCTAGTATTACTAGTTCTGGTAGATCTCAGTACAGACAGTTCTTTTCAAGAACTCAGACACAGCGTCCCAATCTGATTGGCCTAACATCTGG	out-of-frame	CKKQRSRKHSVNEKCNMKIEHYFSP|ihmnqmvttqkllvllvlvdlstdssfqelrhsvpi*	.
TALL070	SSBP2	MGA	-/-	+/+	5:81750981	15:41668828	splice-site	splice-site	translocation	upstream	upstream	0	2	0	34	6	medium	.	.	.	AGCAGCGCCGTCCCGTCCGACAGCCAGGCCCGGGAGAA|GATGGGAAGGCCATTGTGACTATGTGGTGATTACAGTTGTCTTACTACTGAGTTTCCTACTGAAATCATGGAGGAGAAACAGC...GCAGCACCTACCTTCTTTGTCATCTTAAAGCAGCCAGGAAATGGCAAAACTGATCAAGGAATTTTGGTTACTAATCAGGATGCCTGTGCTTTGGCTAGTAGTGTGTCATCACCAGTAAAATCTAA	out-of-frame	SSAVPSDSQAREk|mgrpl*	.
TALL070	FBXO3	ZNF542P	-/-	+/+	11:33747130	19:56376867	splice-site	splice-site	translocation	upstream	upstream	2	0	0	37	11	medium	.	.	.	GATACATGGAAGGATATTATACCTTCCATTTTCTTTACTTTAAAGACAAGATCTTTAATGTTGCCATTCCCCGATTCCATATGGCATGTCCAACATTCAGGGTGTCTATAGCCCGATTG|ATGTGCCAGGTGCAGAGATTAAGGAGTTATCTGC	out-of-frame	YMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARL|mcqvqrlrsyl	.
TALL070	ACACA	AP2B1	-/-	+/+	17:37406262	17:35682695	splice-site	splice-site	inversion	upstream	upstream	0	2	0	0	16	medium	.	.	.	CTGATGTCAATCTTGAGGGCTAG|CTTTGGTGTCATCCCCAGCACTCCTCTGGCCATCCATACACCACTGATGCCAAACCAGAGCATTGATGTCTCCCTGCCTCTCAATACCTTGGGCCCAGTCAT...AAAATGAACTTCAGTTTCAGATTAAGGAATGTCATTTAAATGCTG___ACACTGTTTCCAGCAAGTTGCAAAACAACAATGTTTATACTATTGCCAAGAGGAATGTGGAAGGGCAGGACATGCTGTACC	in-frame	LMSILRAs|FGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPV	.
TALL070	ANAPC5	DNA2	-/-	-/-	12:121335533	10:68430660	splice-site	splice-site	translocation	upstream	downstream	2	0	0	69	7	medium	.	.	duplicates(1)	GAAATTTAATCCTGATTTTGCTGAAGCG___CATTATCTCAGCTACTTAAACAACCTCCGTGTCCAAGATGTTTTCAGTTCAACACACAGTCTCCTCCATTATTTTGATCGTCTGATTCTTACCGG...CCTGCACTGCCGCTTCGGTCACTA|GTAAGAATTCTCTACGCCTGTGGTTTTAGCGTTTTGTTGACCAGCTATACACACTCTGCTGTTGACAATATTCTTTTGAAGTTAGCCAAGTTTAAAATAGG	out-of-frame	LHCRFGH*|*	.
TALL070	VPS13D	SLC19A2	+/+	-/-	1:12510715	1:169477757	3'UTR	splice-site	inversion	downstream	downstream	0	2	0	12	9	medium	.	.	duplicates(2)	GCTGAACTCCAAGTTAGTGGATTGCAGAATGGAAACTTGGCTTTTGCGGCACTGG|GTCTTCAATGAAATTTATCCAGTATGGACTTACTCTTACCTGGTGCTACTGTTTCCTGTGTTCCTTGCCACAGACTACCTCCGTTATAAACCTGTTGTTCTACTGCAGGGGCTCAGCCTTATTGTTACATGGTTTATGCTGCTCTATGCCCAGGGACTGCTGGCC	.	.	.
TALL070	ASCL2(22573),C11orf21(2120)	POLG2	./-	-/-	11:2293525	17:64485868	intergenic	splice-site	translocation	upstream	downstream	0	2	0	4	34	medium	.	.	duplicates(2)	CGGAGGCTGAAACGCTAGTTCCCGCTGCTCGGCTGCTGCAGAAACGAAGCCTATCACAG|GGCCGAGATGGACGAAAAAATGTGGTTCCTTGTGTTCTCTCTGTAAATGGGGACCTAGACCGAGGC...AGAAAG___GTACTTAAACTTCACCCTTGTTTAGCCCCTATTAAGGTTGCTTTGGATGTAGGAAGAGGCCCCACATTGGAACTAAGACAG___GTTTGTCAAGGGCTATTTAATGAGTTACTAGAAAATGG	.	.	.
TALL070	FAM111A	RP11-449H3.3	+/+	+/+	11:59148953	5:146254943	splice-site	splice-site	translocation	downstream	upstream	0	2	0	20	11	medium	.	.	.	GCTGTAAGAAGCAGAGGTCACGGAAGCACTCAGTCAATGAAAAATGTAATATGAAAATCGAGCACTATTTTTCTCCG|ATACATATGAACCAGATGGTTACAACCCAGAAGCTCCTAGTATTACTAGTTCTGGTAGATCTCAGTACAGACAGTTCTTTTCAAGAACTCAGACACAGCGTCCCAATCTGATTGGCCTAACATCTGG	out-of-frame	CKKQRSRKHSVNEKCNMKIEHYFSP|ihmnqmvttqkllvllvlvdlstdssfqelrhsvpi*	.
TALL070	RASA2	IRF2BP2	+/+	-/-	3:141540609	1:234607852	splice-site	splice-site	translocation	downstream	downstream	0	2	0	6	337	medium	.	.	.	GAACTGATAACGGAGAATGGAACTGTATGCCAGCAGCTTGTTGTACA|TTGCAAGAACAGCAAGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAAGTCGGGCCCCCTAAGATCAACGGAGAGGCCCAGCCGTGGCTGTCCACATCCACAGAGGGGCTCAAGATCCCCATGACTCCTACATCCTCTTTTGTGTCTCCGC	out-of-frame	ELITENGTVCQQLVVh|cknskekealsrtrr*	.
TALL070	NCF2	NDUFS1	-/-	-/-	1:183569142	2:206124276	splice-site	splice-site	translocation	upstream	downstream	0	2	0	31	18	medium	.	.	.	GAGCCTCCACCCAGACCGAAAACCCCAGAGATCTTCAG|ATTCAATTAGCAGAGCCTCACAGACAATGGCCAAATGTGTCAAAGCTGTCACAGAGGGTGCCCAGGCAGTAGAGGAACCATCCATATGCTGAAGCTTCTACTAGGATCCCAGTTTTGCCGCAG	out-of-frame	EPPPRPKTPEIFr|fn*	.
TALL070	ZFP91	LYN	+/+	+/+	11:58611052	8:55966713	splice-site	splice-site	translocation	downstream	upstream	0	2	0	38	89	medium	.	.	.	AAGAGATGAGACCTACAAACCCCACTTAGAA|AGGTTACTATAACAACAGTACCAAGGTcGCTGTGAAAACCCTGAAGCCAGGAACTATGTCTGTGCAAGCCTTCCTGGAAGAAGCCAACCTCATG...AGTTTGCTGGATTTCCTGAAGAGCGATGAAGGTGGCAAAGTGCTGCTTCCAAAGCTCATTGACTTTTCTGCTCAG___ATTGCAGAGGGAATGGCATACATCGAGCGGAAGAACTACATTCACCGGG	out-of-frame	RDETYKPHLE|rll*	.
TALL070	DLEU2	RAC2	-/-	-/-	13:50125302	22:37226803	splice-site	splice-site	translocation	upstream	downstream	0	2	0	3	186	medium	.	.	.	GCGAGCCCAGAGCTCCGATCCCTGCGCGGGCTCGAGAGCTCGCCCCGAACGGGGGTCTTCCTCCTCCGCCGTTGACAG|ACTCGGTGAAATACCTGGAGTGCTCAGCTCTCACCCAGAGAGGCCTG...CGTGTTCGACGAGGCCATCCGGGCCGTGCTGTGCCCTCAGCCCACGCGGCAGCAGAAGCGCGCCTGCAGCCTCCTCTAGGG___GTTGCACCCCAGCGCTCCCACCTAGATGGGTCTGATCCTCCAGG	.	.	.
TALL070	PRPF6	ZBTB18	+/+	+/+	20:64016845	1:244053100	splice-site	intron	translocation	downstream	upstream	0	2	0	25	70	medium	.	.	duplicates(1)	CGGAAGCATACCTGGATGGAGGATGCTGACAGT|CTCCTTCTGATCTCGTACATGTGTGCTATACCTGCAAATCTGAAGGCATTAACATCTGTTTTTATACACAGGGCTTTTGTTGTAACACCCTGACTTTAAAA___GTTATGAAGACAGTATGGAGTTTCCAG	out-of-frame	RKHTWMEDADS|lllisymcaipanlkaltsvfihrafvvtp*	.
TALL070	VAV3	RNF20	-/-	+/+	1:107704960	9:101546820	splice-site	splice-site	translocation	upstream	upstream	2	0	0	35	5	medium	.	.	duplicates(1)	AAAATGGGTTAGAATTTTATTGCAAAACAAAAGATTTAAAGAAGAAATGGCTAGAACAGTTTGAAATGGCTTT___GTCTAACATAAGACCAGACTATGCAGACTCCAATTTCCACGACTTCAAGATGCATACCTTCACTCGAGTCACATCCTGCAAAGTCTGCCAGATGCTCCTGAG|TTCTCCAAGTTGCAGAGTAAAGTGGAGACAGCCGAATCAC	out-of-frame	NGLEFYCKTKDLKKKWLEQFEMALSNIRPDYADSNFHDFKMHTFTRVTSCKVCQMLLs|spscrvkwrqpn	.
TALL070	HNRNPH3	ANKHD1	+/+	+/+	10:68341309	5:140538919	splice-site	splice-site	translocation	downstream	upstream	1	0	1	410	51	medium	.	.	.	GCAAGTTCAGGTTTTCATGGTGGTCATTTCGTACATATGAGAGGGTTGCCTTTTCGTGCAACTGAAAATGACATTGCTAAT___TTCTTCTCACCACTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGAGTTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAACATGC|GGTCTGCCAATTTCCATGTATGGAG...ACCCTCTCATCCTCAGCTTGCTGATGTTCCAGGAGGCCCTCTGTTTAATGGACTTCACAATCCAGATCCTGCTTGGAACCCTATGATAAAAGTTATCCAAAATTCAACTGAATGCACTGATGCCC	out-of-frame	ASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNM|rsanfhvw	.
TALL070	HNRNPH3	ANKHD1-EIF4EBP3	+/+	+/+	10:68341309	5:140538919	splice-site	splice-site	translocation	downstream	upstream	1	0	1	410	51	medium	.	.	.	GCAAGTTCAGGTTTTCATGGTGGTCATTTCGTACATATGAGAGGGTTGCCTTTTCGTGCAACTGAAAATGACATTGCTAAT___TTCTTCTCACCACTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGAGTTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAACATGC|GGTCTGCCAATTTCCATGTATGGAG...ACCCTCTCATCCTCAGCTTGCTGATGTTCCAGGAGGCCCTCTGTTTAATGGACTTCACAATCCAGATCCTGCTTGGAACCCTATGATAAAAGTTATCCAAAATTCAACTGAATGCACTGATGCCC	out-of-frame	ASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNM|rsanfhvw	.
TALL070	MALAT1	VTI1A	+/+	+/+	11:65503797	10:112527085	splice-site	splice-site	translocation	downstream	upstream	0	2	0	952	39	medium	.	.	.	CGAACACTCTTTAATGGACCAGATCAGGATTTGAGCGGAAGAACGAATGTAACTTTA|AGAAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTGGGGGATGATGGGAATTCC...GAGAACCAG___AGGGCACATCTGCTCGATAACACAGAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGATACCAAATAGCAGTGGAAACCG___AGCAAATTGGTCAGGAGATGTTGGAAAACC	.	.	.
TALL070	ZFP91-CNTF	LYN	+/+	+/+	11:58611052	8:55966713	splice-site	splice-site	translocation	downstream	upstream	0	2	0	38	89	medium	.	.	.	AAGAGATGAGACCTACAAACCCCACTTAGAA|AGGTTACTATAACAACAGTACCAAGGTcGCTGTGAAAACCCTGAAGCCAGGAACTATGTCTGTGCAAGCCTTCCTGGAAGAAGCCAACCTCATG...AGTTTGCTGGATTTCCTGAAGAGCGATGAAGGTGGCAAAGTGCTGCTTCCAAAGCTCATTGACTTTTCTGCTCAG___ATTGCAGAGGGAATGGCATACATCGAGCGGAAGAACTACATTCACCGGG	out-of-frame	RDETYKPHLE|rll*	.
TALL070	CSNK1G2	SF1	+/+	-/-	19:1980391	11:64776626	3'UTR	splice-site	translocation	downstream	downstream	0	2	0	166	85	medium	.	.	duplicates(1)	CTGGCTCAGGCGGCCCCACCCCCGGGACGTGGGGTCACTTCCTTCAT|ACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAG___GTCCCCT	.	.	.
TALL070	IFIT2	GRB2	+/+	-/-	10:89302128	17:75321827	splice-site	splice-site	translocation	downstream	downstream	0	2	0	9	85	medium	.	.	duplicates(1)	GCCTGAACCGAGCCCTGCCGAACAGCTGAGAATTGCACTGCAACCATGAG|GTTTGGAAACGATGTGCAGCACTTCAAGGTGCTCCGAGATGGAGCCGGGAAGTACTTCCTCTGGGTGGTGAAGTTCAATTCTTTGAATGAGCTGGTGGATTATCACAGATCTACATCTGTCTCCAGAAACCAGCAGATATTCCTGCGGGACATAGAACAGGTGCCACAGGTAAGCCTCATCAGGG	in-frame	Mr|FGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQvslir	.
TALL070	USP12	HMGB1	-/-	-/-	13:27171592	13:30463694	splice-site	splice-site	duplication	upstream	downstream	0	2	0	16	598	medium	.	.	.	GGCCGGATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATG|AAAAATAACTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTTTTTGTGCAAACTTGTCGGGAGGAGCATAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAG___ACCATGTCTGCTAAAGAGAAA	out-of-frame	MEILMTVSKFASICTM|knn*	.
TALL070	MGEA5	DDX5	-/-	-/-	10:101813030	17:64504842	splice-site	splice-site	translocation	upstream	downstream	2	0	0	76	819	medium	.	.	.	GATTTTATGGAAGACCTTGGGTTATGGAACAGAGAAAAGAACTCTTTAGAAG___GCTCCAGAAATGGGAATTAAATACATACTTGTATGCCCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAGGAAGCTG|GTTTGGTGCACCTCGATTTGGAGGAAGTAGGGCAGGGCCCTTATCTGGAAAGAAGTTTGGA	out-of-frame	FYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEA|glvhldleevgqgpylersl	.
TALL070	KDM3A	RP11-437B10.1	+/+	+/+	2:86478735	15:92892004	splice-site	splice-site	translocation	downstream	upstream	0	2	0	84	784	medium	.	.	.	TGCCCTTGTTCAAACAGGCAATTCAAACTCTTTTCAAAGCCAGCCTCAAAGGAAGACCTAAAACAG|AAATATGAACCTCAAACTGAATCCTCTAAAGGCCCCATACAATGAAGTAGACATTGGTGGAAACATTTA___CACCCAGTCAGCTTGAAGAGTTTCAAATGGACCCTACCACTGAGAAATCAAGATGGCAGTCTACTATGGGGAATTGAGGAAAAATGGATTAATACAAGAGTCCTGT	out-of-frame	CPCSNRQFKLFSKPASKEDLKQ|kyepqtesskgpiq*	.
TALL070	MAP2K5	SKOR1	+/+	+/+	15:67779881	15:67825936	intron	splice-site	deletion/read-through	downstream	upstream	1	0	2	1	3	low	.	.	.	ATTTCATCACTCAGTG___TATGCGAAAACAGCCAAAAGAAAGGCCAGCACCTGAAGAATTGATG___CATGCACTTCGGCTGTGGTAAAA___TATCTTGTTTCAAGGCACAGTGAAGCTGTGTAGCATTC...GAAGAGTTTGGTTATCTTGGATGCAGTAAAGTGGATCAGTTGGGCTGCTCTTCAGTGCCGTGCCAGATTTGCGGCAGCGGGAGGCTAAG|GAGCGGCGGCATGGAGGCTCTCACCACTCAGCTGGGGCCGGGGCGCGAGGGCAGTTCCTCGCCCAACTCCAAGCAGGAGCTGCAGCCGTACTCGGGCTCCAGCGCTCTCAAACCCAACCAGGTGGGCGAGACGTCGCTGTACG	.	.	.
TALL070	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	2	0	1	12	1	low	.	.	.	AACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAAC	out-of-frame	NRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|wlyassssscs*	.
TALL070	SLC6A6	SLC44A2	+/.	+/.	3:14472191	19:10634823	intron	CDS	translocation	downstream	upstream	0	0	2	4	73	low	.	.	duplicates(1)	.	.	.	.
TALL070	ATM	UTY	+/+	-/-	11:108319962	Y:13465455	CDS	intron	translocation	downstream	downstream	0	0	2	36	7	low	.	.	.	CGTCTATTTAAAAGGATTGGATTATGAAAATAAAGACTGGTGTCCTGAACTAGAAGAACTTCATTACCAAGCAGCATGGAGGAATATGCAGTGGGACCATTGCACTTCCGTCAG___CAAAGAAGT...|...CCTATTAGCCTTTGATCACAACATTGTTGTTAGCTGATCAATACATAACTATATTTTATGTGTATTTCTGTTTAAAAATCCCTACTAAAATCTAAATTGTTGATTCATTATCATTGAACTCAAA	.	.	.
TALL070	GTPBP4	PLEKHG2	+/+	+/+	10:1017277	19:39421024	3'UTR	intron	translocation	downstream	upstream	0	0	2	33	4	low	.	.	.	ACGTGTTTGATATGAAGCCCAAGCACTTGCTGTCTGGGAAGAGGAAAGCTGGTAAAAAGGACAGGAGATAGTATCCGTTTGGTTGGCGTGGCTTCGCTAGAGTGTTGCTGTTTATTTCCTG...|...AGGCATCGGGGTGGGAGCTGGGCTCCTGACATCACTGTGTCCTCCCCGCAGAGCCGGTGAAGGACCCTTATGTCATGTTCCCACAGAACG___CTAAGCCTGGATTCAAG___CACGCTGGCAGCGAAGGG	.	.	.
TALL070	PTPRE	CDR2	+/+	-/-	10:128071388	16:22421010	3'UTR	intron	translocation	downstream	downstream	0	0	2	31	5	low	.	.	.	GCAGAGGCCCGCCTCCCCCTTACACAGAGGGGCCTGAGCCACCCAGCCGAGGCCATGCAGGTGAACTCAGCTGAGACCACCTAGGAAAAGGCTGTGGCCTTGAGGAGGACAAGAAATGGGCCTAGG...|...CAGCCCCTCCCAAGCCCAGCCACCAGCTGAGGTCCTGACCACCTTGTGGACCACCCGGTCCTCCAGCCCTGCGCCCACCCCCGCGTCCTCCCTCCTGCTCTTTCGTAGTTCCCTTGTGTTTCTC	.	.	.
TALL070	PTPRE	RRN3P3	+/+	-/-	10:128071388	16:22421010	3'UTR	intron	translocation	downstream	downstream	0	0	2	31	5	low	.	.	.	GCAGAGGCCCGCCTCCCCCTTACACAGAGGGGCCTGAGCCACCCAGCCGAGGCCATGCAGGTGAACTCAGCTGAGACCACCTAGGAAAAGGCTGTGGCCTTGAGGAGGACAAGAAATGGGCCTAGG...|...CAGCCCCTCCCAAGCCCAGCCACCAGCTGAGGTCCTGACCACCTTGTGGACCACCCGGTCCTCCAGCCCTGCGCCCACCCCCGCGTCCTCCCTCCTGCTCTTTCGTAGTTCCCTTGTGTTTCTC	.	.	.
TALL070	E4F1	LEF1	+/+	-/-	16:2228499	4:108048709	CDS	CDS	translocation	downstream	downstream	0	0	2	15	137	low	.	.	.	GGACGATGTGCACAGATGCGGCCGCTGCCAGGCAGAGTTCACCGCCTTGGAGGATTTTGTTCAGCACAAGATTCAGAAGGCCTGCCAGCGGGCCCCTCCGGAGGCCCTGCCTGCCACCCCTGCC...|...CGACCCCAGGACCTCTTCTGGAGATGGAAGCTTGTTGAAAACCCAGACTGTCTCCACGGCCTGCCCAGTCGACCCCAAAGGAACACTGACATCAATTTTACCCTGAGGTCACTGCTAGAGACGC	.	.	.
TALL070	ANO9	RBM19	-/-	-/+	11:430119	12:113819820	CDS	intron	translocation/5'-5'	upstream	upstream	0	0	2	39	11	low	.	.	.	GCCGCCCTGACGGGCCTCTTAGTCTTTCTGAGCGGATTCTCGCTGTTTGAGGCCAGCCAGATCAG___CAAGGAGATCTGTGAGGCCCACGACATCCTCATGTGTCCCCTCGGCGACCACAGCCGCAGG...|...GCCAGGCAAAcGACTTTTCCCGAGCTCCGCTTTATGGCTACCTGGCTGTACTTTACTGCATTCTAGAACAATGATGATGATTGTAACAAAAATCTTAATTGCTTTCCTAGTTCCCGTTTAAAAC	.	.	.
TALL070	FAM193A	PSMD7	+/+	+/+	4:2663168	16:74300839	CDS	intron	translocation	downstream	upstream	0	0	2	15	9	low	.	.	duplicates(1)	GCCAACATGAATGGAATCCACAGCGAATTGAATGGTGGCGGGGAAAACATGGCCCTGAAGGATGAG___TCTCCTCAGATAAGCAGTACCAGCAGTAGTTCCTCAGAAGCTGATGATGAAGAAGCGGAC...|...GCCAGGTATTCCAGTTTTTTAAGAGAAGCTGGAAGTCTGGATTTTTATGTGAATTCTCCCAGTTTTTGGGGCAGCTCAAAAAAAATTTTTTAATACTTTGCTGGGCAAGTGAAACACGTAAGTG	.	.	.
TALL070	HUS1	SPG7	-/-	+/+	7:47963123	16:89541047	intron	intron	translocation	upstream	upstream	0	0	2	11	39	low	.	.	.	TAAG___TGTCTACCAAGTCCTCCACCTCTTTGCTCCTCAAAGAGCTGTGAAAAATGATGGCAGGAGCCGGTACAACACCACAGACTTAGAGAAGGGCACAGTGCTGCTTTATTGAATGATCTACCA...|...GTACGCAGAAATAGAAGAGCTGAAACTGGTGTATCCTTATCACGGTGTTGTACGCAGAAATAGAAGAGCTGAAACTGGTGTATCCTTATCACGGTGTTCTACGCAGAAATAGAAGAGCTGAAAC	.	.	.
TALL070	C6orf106	FAM46A	-/-	-/-	6:34588937	6:81747814	3'UTR	3'UTR	duplication	upstream	downstream	0	0	2	18	61	low	.	.	.	TGCAGGGTCACCTGCCTGTTACCACACCCCCATCCAGCTGGGTGGTGGGTGAGGGTGTGAGACAGGCAGGGAGACCAGGTAATGAGTGGCTGCAAGGAGTCATATAGCCTGGGTGTGGGTGAGG...|...CCTCTAGATACTGGTCTCTGAAAATGCATTTGTTAAAAACAAAACAAAACTAACACATAAGAACCTTCCCTTTGTGTTGTGAAACAACCACATAATCTCCACAACCTTAGTGGATGACTGCTTGC	.	.	.
TALL070	PHIP	ISCU	-/-	+/+	6:78961706	12:108564279	CDS	CDS	translocation	upstream	upstream	0	0	2	27	78	low	.	.	.	AAACCAGTTGATGACACTAG___ATATTGCCTCAGCATTTGTGGCCCCCGTGGATCTGCAAGCCTATCCCATGTATTGCACAGTAGTGGCATATCCAACGGATCTAAGTACAATTAAACAAAGACTGG...|...GTTGTTGATCATTATGAAAATCCTAGAAACGTGGGGTCCCTTGACAAGACATCTAAAAATGTTGGAACTGGACTGGTGGGGGCTCCAGCATGTGGTGACGTAATGAAATTACAG___ATTC	.	.	.
TALL070	PRKCZ	SEMA7A	+/+	-/-	1:2185241	15:74410906	3'UTR	CDS	translocation	downstream	downstream	0	0	2	6	26	low	.	.	.	CAGACGCTTGCGCCGAGACCGCAGAGGGAAGCGTCAGCGGGCGCTGCTGGGAGCAGAACAGTCCCTCACACCTGGGCCCGGGCAGGCCAGCTTCGTGCTGGAGGAACTTGCTGCTGTGCCTGCGT...|...CACCTACTCATGGCGCCACAAGGAGAACGTGGAGCAGAGCTGCGAACCTGGTCACCAGAGCCCCAACTGCATCCTGTTCATCGAGAACCTCACGGCGCAGCAGTACGGCCACTACTTCTGC	.	.	.
TALL070	RAF1	EIF1AX	-/.	-/.	3:12643785	X:20128423	intron	intron	translocation	upstream	downstream	0	0	2	2	17	low	.	.	.	.	.	.	.
TALL070	CCNT2	CELF2	+/+	+/-	2:134955366	10:11315523	3'UTR	intron	translocation/5'-5'	downstream	downstream	0	0	2	102	10	low	.	.	duplicates(1)	CTAAAACAAAGGTGGCACTTTTTTATGTTAACCTTAAACTCTAGGCCTTACTGGAAGCCACTGATAGGGGACACTTCACTACCAGATGTGTGCAGTGCAACAGATGGTCATATACACTGTGAGGC...|...AAGTTAATTTTTATTTGGATAAATTTTAGGTTCATTTTCTACCAAGTCCAGTGCAAGGTATTCCGAGCCTTTACAGTATGAAATTACTGGGATTATTTTGCTTTAAAAAAGTATACTGCCT	.	.	.
TALL070	BTG2	ZCCHC6	+/.	-/.	1:203308968	9:86296146	3'UTR	intron	translocation	upstream	upstream	0	0	2	501	25	low	.	.	.	.	.	.	.
TALL070	SLC35A3	SLC35A3	+/+	+/+	1:100024336	1:100008158	3'UTR	intron	duplication	downstream	upstream	0	2	0	7	12	low	.	.	.	TGAGTATAAGAAGTATTTTACTGTCTGGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACAA|GGCCAGGCTGGTCTCGAACTCCTGACCTCATGATCCACCCTCCTCAGCCTCCTAAAGTGCTGGGATTACAGGCGCGAGCCACTGTACCCAGCCTAATATTTTTCATATTTATTTTAAATGAGTATTACAAAAGTTTAAGTGGCATATCAAATTCATATTTTCATAAATATTGCTTAGGGTAAGCTAAAGTAGGCATTGTTTCAAACAGTTAGGTATTTTAAATTAGAAAGTTATTAATAGTTCAGGTGGAACATAAGTTTGACAAAACC	.	.	.
TALL070	XAB2	TNIP1	-/-	-/+	19:7628230	5:151067992	CDS	intron	translocation/5'-5'	upstream	upstream	0	0	2	27	3	low	.	.	.	GAAAAATGGTGGTGATGGCGCGACTCTCGCGGCCCGAGCGGCCGGACCTTGTCTTC___GAGGAAGAGGACCTCCCCTATGAGGAGGAAATCATGCGGAACCAATTCTCTGTCAAATGCTGGCTTCGC...|...CAGTTTCTCTTGGCGCTGGGGAGTCAACGGGAAAGGGGTTCATGGGAAACAAAAAGTGGGCAGACAGAGCTATGCTCCCCTACTTTAGCCTCAGGGGGCAGAGCTTGGGGAGAAAGAAAGGCAG	.	.	.
TALL070	RBCK1	LMO2	+/+	-/-	20:430581	11:33859004	3'UTR	3'UTR	translocation	downstream	downstream	2	0	0	91	19	low	.	.	.	CTGCCACTGAGCTAAAGATGGTGGGGCCACATGCTGACCCAGCCCCACATCCACATTCTGTTAGAATGTAGCTCAGGGAGCTTCGTGGACGGCCTTGCTTGCTGTAGCGTTGTAGGGGCCCTGCCTGCACTGCGGTTGTCCACGGTCACATCTGCCCCAGT|TTGTGACTTTGACGCTTGCGAACTAGAGATGTGCAATTGATTTCTTTTCTTCCTGGCTTTTTAACTCCCC	.	.	.
TALL070	NUDT21	AFF3	-/-	-/+	16:56439698	2:99564626	CDS	intron	translocation/5'-5'	upstream	upstream	0	0	2	37	4	low	.	.	duplicates(1)	ATTTTCTGTTCACTGAAGAAGGGGATTTGTGAGTACATATATTTAGTTGTTTACTGGCTTATTTCTTTTTGACAGATACTGGGTCGTCAGGATGGAGTTTTGCAAGACTGGGTCATTGACGATT...|...ACCAAGTAGCATCTTTGGGCCAATGTAGACCAAAAAGATCACATCCTAAGATGATTAGAAATCTTCCATGCAGAATGTTTGGACATGGTGGAAAATGTCTAAGCTTTGATTGCACAGAACCCCAG	.	.	.
TALL070	STK4	BRCC3	+/+	+/+	20:44981801	X:155073377	intron	CDS	translocation	downstream	upstream	0	0	2	4	45	low	.	.	duplicates(1)	TTTGCATTCTTATCAGGAGGTTGTCCATTTTATCCTTAACTATGAATAATTGATCTTTCCAGATGAGGAATTAATTTGTATATACTTGCTAGCATGAATTAAGAGATATTTGAAGGCCATTTTAT...|...GAGTGACTCCAAATTTGCATATACTGGAACTGAAATGCGCACAGTTGCTGAAAAG___GTTGATGCCGTCAGAATTGTTCACATTCATTCTGTCATCATCTTACGACGTTCTGATAAG	.	.	.
TALL070	GSN	QTRTD1	+/+	+/+	9:121310823	3:114085812	CDS	CDS	translocation	downstream	upstream	0	0	2	24	15	low	.	.	.	CAGGATTCAAGCACGTGGTACCCAACGAGGTGGTGGTGCAGAGACTCTTCCAGGTCAAAGGGCGGCGTGTGGTCCGTGCCACCGAGGTACCTGTGTCCTGGGAGAGCTTCAACAATGGCGACTG...|...CACTACTTTGGGTTTTTCCATTACATCCGGGAAGCACTAAAAAGTGACAAACTGGCACAGTTGAAAGAGCTCATCCACAGGCAAGCATCTTGAGATCTTGCAAATACAAGTCTCACTCTTCACAC	.	.	.
TALL070	HNRNPK	RCBTB2	-/.	-/.	9:83971456	13:48490068	intron	3'UTR	translocation	upstream	downstream	0	0	2	81	292	low	.	.	.	.	.	.	.
TALL070	SRSF10	DEF8	-/-	+/+	1:23970673	16:89956857	3'UTR	exon	translocation	upstream	upstream	0	0	2	102	2	low	.	.	.	ACTGTTAACCTAGAAATGTAGCTTGCTAATAAGATAGAATGATACAAAAGTGAAGTAGTAGCCACAGTACAACACTGACTGCTCAGACACATTTAGGTTCAGGGTGGACCTTTATGTCTTGTCA...|...GAGCTGCAAGGGGGAGGGGAGGGTGCCACCTCCCCTTTGCCTGGGTCTCAGAGCCCAGCAGCCTGGAGGAGGAGGATGGCTCCTGAGGGCGGGGTCCAGGCTCCCCAGCACTGAGACCTGATC	.	.	.
TALL070	KIAA0319L	CD2AP	-/-	+/+	1:35450463	6:47624817	CDS	3'UTR	translocation	upstream	upstream	0	0	2	9	39	low	.	.	.	CCTATGTGTTCACCTTGACTGTCAAAGATGAGAGGAACCTGCAAAGCCAGAGCTCTGTGAATGTCATTGTCAAAGAAG___AAATAAACAAACCACCTATAGCCAAGATAACTGGGAATGTGGTGATT...|...AATAGGAGTTTCCTAGCTATATAAACCAGATTACTCACCCATGCATATAGTAAGAACTAATGAATAATCAAAATAATTTCATCAACTTTTAGAATATTTTATGTTGCTTGCACTATAGGAG	.	.	.
TALL070	ITGAL	TIAL1	+/+	-/-	16:30504183	10:119580444	CDS	exon	translocation	downstream	downstream	0	0	2	169	58	low	.	.	duplicates(1)	TGGATGGCCACCGGACCAGAAGACGGGGGTTGTTCCCAGGAGGGAGACATGAACTCAGAAGGAATATAGCTGTCACCACCAGCATGTCATGCACTGACTTCTCATTTCATTTCCCG___GTATGTGTT...|...CCTCTTTTTCAATTTTTTAATATTTCATATATTTTGTATCACTAGGCAGAAGACATTTAACTATTTAGAGATTGCATGGTAAAGTAGTTAGTATTGTTACAGTAATTTATAGAATCAGTAAACC	.	.	.
TALL070	C5orf56	RAD50	+/+	+/+	5:132449689	5:132531718	splice-site	intron	deletion/read-through	downstream	upstream	0	2	0	9	2	low	.	.	.	CAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GTTCCCATTGGGTTTGACCATGGGAGCATTGACAGGTGATCAAAAGGTAGGAGGTGCGTGAAGCAAGaTATcTAT...AGCACTGATCGGAATGGATTACCTCTACATTCTTCATATTTGCAGACTGCTTTTAGTTTTAGTTCCCAGACTTTTGGTCTTAAAGACGCCTTTACACTAAAAAATTACGGGGGACCTCAAAGAGC	out-of-frame	QPWVPEFVAYWRKTHQ|gshwv*	.
TALL070	VARS	ARGLU1	-/-	-/-	6:31781938	13:106567719	CDS	CDS	translocation	upstream	downstream	2	0	0	39	217	low	.	.	.	CAACATCCG___GGAGTGGTGCATTTCCAGGCAGCTGTGGTGGGGCCATCGCATCCCAGCCTACTTTGTCACTGTCAGTGACCCAGCGGTGCCCCCTGGGGAGGTGAGCAGAGGGCCAGAGCTAGC...GGACCCTGATGGGCGG|GCGCGAGCGGGACCGGGAGCGCGCCTCGTCCCCGCCCGACCGCATCGACATCTTCGGGCGCACGGTGAGCAAGCGCAGCAGCCTGGACGAGAAGCAGAA	out-of-frame	DPDGR|aragpgarlvparphrhlrahgeqaqqpgrea	.
TALL070	C1orf174	RABGGTB	-/-	+/+	1:3890000	1:75794510	CDS	CDS	inversion	upstream	upstream	0	0	2	74	338	low	.	.	.	CAGCCAATGCCCGTGAGCCGGTTCTTTGGAAACGTTGAGCTCATGCAG___GACCTCCCACCTGCGTCTTCATCTTGTCCTTCAATGAGCAGACGAGAGTTCAGAAAAATGCATTTCAGAGCCAA...|...GTGGATCCTTTTCATACCTTATTTGGAATTGCTGGATTGTCACTTTTGGGAGAAGAACAGATTAAACCTGTTAATCCTGTCTTTTGCATGCCTGAAGAAGTGCTTCAGAGAGTGAATGTTCA	.	.	.
TALL070	UBR2	HNRNPK	+/+	-/-	6:42662220	9:83970244	CDS	CDS	translocation	downstream	downstream	0	0	2	47	364	low	.	.	.	GTGGAAAGCAGGGCAATGGTCTTGGCAGCATTTGTTCAGAGATCAACTGTATTATCAAAAAACAGAAGTAAATTTATTCAAGATCCAG___AAAAATATGATCCATTATTCATGCACCCTGATCTGTC...|...TTAGAAGGATCCGAAGATCGGATCATTACCATTACAGGAACACAGGACCAGATACAGAATGCACAGTATTTGCTGCAGAACAG___TGTGAAGCAGTATGCAGATGTTGAAGGATTCTAATGCAA	.	.	.
TALL070	HACL1	NARS2	-/-	-/+	3:15564647	11:78437125	CDS	intron	translocation/5'-5'	upstream	upstream	0	0	2	3	3	low	.	.	.	GCTATTGCAGCTGCCGTGGTGGCTAAAGATAGAAGCCCTGGGCAATGGATCATCTGTGTGGAAGGAGACAGTGCATTTGGGTTTTCTGGCATGGAGGTAGAAACCATCTGCAG___GTACAACTTGCC...|...ATAGATTTACTAATTTTCTTGAAAATATACGCCTCTTTTATTTCTTGGTAGGTTAATCACAATGTTTTCTTTTCCTTCCCAAAATCATATTGTTCAATACACAGAGGAGAGTGCAGAGTTTT	.	.	.
TALL070	PLEK	GLIPR1	+/+	+/-	2:68397154	12:75499350	3'UTR	3'UTR	translocation/5'-5'	downstream	downstream	0	0	2	127	48	low	.	.	.	CTAACCTAGACTAAAATTGGGAACTTATTTGCAATTTTTGACCCTGACCACTAACTAGTGATTCTTCTCCAAAATTGAGAAAGACAGCACCCATTGAAGCAGATATGTGTGTGAAAGTATATTTT...|...AGATATTTAGAGTCGAAGCAGCATGCAAAAAATAATAATGTTTTTAACTAATGAAGGCTACTGGAGTTACTAAGAATCACCTAAAAATGTGCTACTGTACCTTGCTCATTTTGCAGATTTA	.	.	.
TALL070	PLEK	KRR1	+/+	-/-	2:68397154	12:75499350	3'UTR	3'UTR	translocation	downstream	downstream	0	0	2	127	48	low	.	.	.	CTAACCTAGACTAAAATTGGGAACTTATTTGCAATTTTTGACCCTGACCACTAACTAGTGATTCTTCTCCAAAATTGAGAAAGACAGCACCCATTGAAGCAGATATGTGTGTGAAAGTATATTTT...|...AGATATTTAGAGTCGAAGCAGCATGCAAAAAATAATAATGTTTTTAACTAATGAAGGCTACTGGAGTTACTAAGAATCACCTAAAAATGTGCTACTGTACCTTGCTCATTTTGCAGATTTA	.	.	.
TALL070	SWAP70	DNAJB4	+/+	+/+	11:9752308	1:78016425	3'UTR	3'UTR	translocation	downstream	upstream	0	0	2	18	8	low	.	.	.	TTCTAGAAGTTGTGAAATAGGTCCTGCACTTTTGCAGAATGTCCTTCTTTAAACCTGGCTTATTCCACAGCTGTAGCTGATAACATGACCTGGGGCTTAGCTGCTCTAGCCCTGGGTTCTTGG...|...GATAAAAGAGAAAACCATTCACTGTATTTTATTTCATTTCTCCTGATTCAGATATTTTTAGTAATTTGCTTATATGTAAAAGTTGTTTTTGTGGAGTCAGTGGATATATTTCTAATGAAGTGCTA	.	.	.
TALL070	AC108004.3	PFKFB2	-/-	+/+	17:404576	1:207073674	exon	3'UTR	translocation	upstream	upstream	0	0	2	4	58	low	.	.	.	GTCAGAGTGTAGAAGCTTTGGGGTAAGGTTTCCTTCAAAACAGAGATTGGGGCACTCGGCTTTCGACGTGGGCTGCCTGTGGCTGGAGCTGCCATCTTTGTCCGAGAG___CCCACTACAGTTGTAGT...|...AGCTCGTAACTGTTTGTATTTCTCTATTCACTTCTGTCATTTCATTTTCTTTGTAGGGTTAAACAGAAAATGTTTAGGGAAGAAATTCTTAGCCCCTTGATGACCATGATGGCTTATTCTCTTTC	.	.	.
TALL070	CAP1	IL11RA	+/+	+/+	1:40072420	9:34660523	3'UTR	CDS	translocation	downstream	upstream	0	2	0	98	45	low	.	.	.	CTTATGGCTTCTGTCTAAGCACCTGAACAGAGGACTGAAACCTCCACT|GCAGGTAGCTGTGCTGGCGTCTTTGGGAATCCTTTCTTTCCTGGGACTGGTGGCTGGGGCCCTGGCACTGGGGCTCTGGTAAGTGACTGCCATTGGTCCCTCAGCCTCTGATCCTCACACATGCTCTGATGCCCATAGACCACATTCATCTCCACCCTTCATGACTGCCCGC	.	.	.
TALL070	INO80B-WBP1	DOK1	+/+	+/+	2:74456274	2:74556331	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	29	5	low	.	.	.	GAAGAGGAGGAACAGAGGTGGCTGGATGCCCTGGAGAAGGGGGAGCTGGATGACAATGGAGACCTCAAGAAGGAGATCAATGAGCGGCTGCTTACTGCTCGACAGGT...|...CCGCCGCTGCCCCTCAGGCCCTGGAACCTTCACCTTCCAGACGGCACAGGGAAATGACATCTTCCAGGCAGTTGAGACTGCCATCCACCGGCAGAAGGCCCAGGGAAAGGCCGGACAGGGGCACG	.	.	.
TALL070	NUTM2A-AS1	NUTM2A-AS1	-/-	-/-	10:87325057	10:87325671	exon	intron	duplication	upstream	downstream	0	2	0	1	4	low	.	.	.	GAAAAACTCTCTTAATGCTTTTTACGGCCGGGTGCGGTGGCT|CGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCAATTTCACTCCACTTTCATTGGGGGGAGATTTGCAGTTAATTCCAATTTGAATAATATCTTTGTAACTAAATTTATCACGAAGCTCAACATGACAATTTAGTATAGTTAATCTCCATTTCGTTTTACTTTTGCAC	.	.	.
TALL070	KDM3A	LINC01578	+/+	+/+	2:86478735	15:92892004	splice-site	splice-site	translocation	downstream	upstream	0	2	0	84	784	low	.	.	.	TGCCCTTGTTCAAACAGGCAATTCAAACTCTTTTCAAAGCCAGCCTCAAAGGAAGACCTAAAACAG|AAATATGAACCTCAAACTGAATCCTCTAAAGGCCCCATACAATGAAGTAGACATTGGTGGAAACATTTA___CACCCAGTCAGCTTGAAGAGTTTCAAATGGACCCTACCACTGAGAAATCAAGATGGCAGTCTACTATGGGGAATTGAGGAAAAATGGATTAATACAAGAGTCCTGT	out-of-frame	CPCSNRQFKLFSKPASKEDLKQ|kyepqtesskgpiq*	.
TALL071	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	63	0	243	115	high	.	.	duplicates(7),low_entropy(1),mismatches(5)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACC	.	.	.
TALL071	SMCHD1	DLGAP1	+/+	-/+	18:2743928	18:4129554	splice-site	intron	deletion/5'-5'	downstream	upstream	19	19	11	236	262	high	.	.	duplicates(1),inconsistently_clipped(1)	CGTTTACAGTAAG___ACCACTTCCTGATGAACCT-AACATTTAAAATGTGAAATGAAAGGAGGAAAAACAGTACAGATGGGCCAAGAGCTTCAAGGAGAAGTAG___TTATAATAATTACgGATCAGTACGGAAATCAGATTCAAGCATTTTCACCAAGTTCTTTATCTTCTTTGTCAATTGCTGGGGTTGGACTTGATAGCTCAAATTTGAAAACAACCTTTCAG___GAAAACACACAGAGTATAAGTGTAAGAGGCATCAAATTTATTCCAGGTCCTCCTGGAAATAAGGATCTTTGTTTTACTTGGCGTGAGTTTTCTGACTTTATTCGAGTGCAACTAATTTCTGGACCTCCTGCTAAACTTCTCCTTATAGACTGGCCAGAACTAAAGGAG|ATATGTGCTTTTCTAAGACTACAAGGAACACTGCGACTTTcCCTGAGGCTTTGGGTTACTGGAAGATGAGGAAGGATAAATGTGAAGTTGTGGACTGTTTTAAATTCCACCTGACCATTCTGCTTTCCTGAGCAACCTACCCACGCCAATTTAGTACTGGCTTTCTTCAGAGCATTAGGACAATGGGATTCTGTCTACAGCTGTGCCATGAACGGACTCTGATTCCTTAGGCAAAGAATCTCTTCTTGCTAAAATAGTTAATTTGAAGGAATAACAGG	out-of-frame	FTVRPLPDEPni*nvk*keekqyrwaksfkek*l**lristeirfkhfhqvlyllcqllgldliaqi*kqpfrkthrv*v*easnlfqvlleirifvllgvsfltlfecn*fldlllnfsl*tgqn*rr|yvlf*	.
TALL071	SEC16A	NOTCH1	-/-	-/-	9:136459134	9:136506973	splice-site	splice-site	duplication	upstream	downstream	7	5	1	102	95	high	.	.	.	TGGGGAGATTGGAGGCCGCACCTCGCCATGGTCTTGTCCAACTTGAACAACAACATGGACGTCGAGTCCAGGACGATGGaTACCATGGGCGACACTCTGG___CTTCAAGGGGCCTCTTGGATGCGGCCCACTTCTGCTACCTCATGGCCCAGGCGGGATTTGGTGTTTACACGAAGAAAACTACAAAGCTTGTCTTAATCGGATCCAATCACAG___TTTGCCATTCTTAAAGTTCGCAACCAACGAAGCAATCCAGAGGACGGAAGCCTATGAGTACGCCCAGTCCCTGGGTGCCGAGACCTGCCCCCTGCCTAGTTTCCAG|GTGTGCACTGTGAGATCAACGTGGACGACTGCAATCCCCCCGTTGACCCCGTGTCCCGGAGCCCCAAGTGCTTTAACAACGGCACCTGCGTGGACCAGGTGGGCGGCTACAGCTGCACCTGCCCGCCGGGCTTCGTGGGTGAGCGCTGTGAGGGGGATGTCAACGAGTGCCTGTCCAATCCCTGCGACGCCCGTGGCACCCAGAACTGCGTGCAGCGCGTCAATGACTTCCACTGCGAGTGCCGTGCTGGTCACACCG___GGCGCCGCTGCGAGTCCGTCATCAATGGCTGCAAAGGCAAGCCCTGCAAGAATGGGGGCACCTGCG	out-of-frame	WGDWRPHLAMVLSNLNNNMDVESRTMdTMGDTLASRGLLDAAHFCYLMAQAGFGVYTKKTTKLVLIGSNHSLPFLKFATNEAIQRTEAYEYAQSLGAETCPLPSFQ|vctvrstwttaippltpcpgapsalttapawtrwaataaparraswvsavrgmstsacpipatpvaprtacsasmtstasavlvtpgaaaspssmaakasparmgap	.
TALL071	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	20	1	143	38	medium	.	.	low_entropy(2),mismappers(1),mismatches(6)	GCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACcGAGG	.	.	.
TALL071	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	8	11	1	56	18	medium	.	.	low_entropy(1),mismappers(1)	CCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTG?TTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAGTCCATCCTGGCTAgCACAGTGAAAACCCATCTCTACTAAAAAT	.	.	.
TALL071	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	12	0	2	360	337	medium	.	.	duplicates(1),mismatches(2)	AGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___...GCA?CATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCC?GAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCC	out-of-frame	?ISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|gprelllcarpgpga*	.
TALL071	IL9R	WASH6P	+/+	+/+	X:156007607	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	2	206	337	low	.	.	mismatches(1),read_through(4)	TGTCCAGATGGCCACACTGGAGGATGATGTGGTAGAGGAGGAGCGTTATACAGGCCAGTGGAGTGAGTGGAGCCAGCCTGTGTGCTTCCAGGCTCCCCAGAGACAAG___GCCCTCTGATCCCACCC...GCTGTCGCCCAG___GGTGAAGAGAATCTTCTACCAGAACGTGCCCTCTCCAGCGATGTTCTTCCAGCCCCTCTACAGTGTACACAATGGGAACTTCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGC	out-of-frame	LSPRVKRIFYQNVPSPAMFFQPLYSVHNGNFQ|vpenyfyvpdlgqvpeidvpsylpdlpgiandlmyiadlgpgiapsapgtipelptfhtevaeplkadlqdgvltpppp	.
TALL071	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	167	337	low	.	.	.	AGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCC	out-of-frame	MPQTCDGTGQMHLGr|sqrttsmcqtwarclrlmfhptcltcpalpttsctlptwapalpplplapf	.
TALL071	IL9R	WASH6P	+/+	+/+	X:156001508	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	205	337	low	.	.	.	CAAATCACCTCCAGGTTGGGtATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TAACTGCTGCAAGAACGGACAGACACTGCTGCAGAGAACTTGCCACGGTGTTTCATGCT...GCTGGTGGTTCCAGGCTGCACGCTCCATTCTAGGAAAGG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCAT	out-of-frame	WWFQAARSILGK|gprelllcarpgpga*	.
TALL071	IL9R	WASH6P	+/+	+/+	X:156004565	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	419	337	low	.	.	low_entropy(1),read_through(3)	GTGCTCGTGCCATCTGACAATTTCACCATCACTTTCCACCACTGCATGTCTGGGAGGGAGCAGGTCAGCCTGGTGGACCCGGAGTACCTGCCCCGGAGACACG___TTAAGCTGGACCCGCCCTCT...CAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACC	out-of-frame	QSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|vpenyfyvpdlgqvpeidvpsylpdlpgiandlmyiadlgpgiapsapgtipelptfhtevaeplkadlqdgvltp	.
TALL071	RP11-325K4.3	DOK4(3500),CCDC102A(21351)	+/+	./+	16:56940401	16:57490827	splice-site	intergenic	deletion	downstream	upstream	6	0	0	320	6	medium	.	.	duplicates(3),low_entropy(1),mismappers(9),mismatches(15)	CAAAATTTGCGGATGAATGCACAAGGTGGCCCTATTGTGGAAGAAGATGATGAAATAAATCGAGATTGGTTGGATTGGACCTATTCAGCAGCTACATTTTCTGTTTTTCTCAGTATCCTCTACTTCTACTCCTCCCTGAGCAGATTCCTCATGGTCATGGGGGCCACCGTTGTTATGTACCTGTAAGCAGATGGTTTCTCTAATATAAATTACACTACACTGTGTTCACACTAAGCAGATTTTGCTCTTTTTGTTTCTTGTTTTTTTTGAGATGGAGTCTCGCTCTGTCATTCAGGCTGGAGTACAATGGCACAATCACTGCAATCTCCGCTTCCCAG|GTTCG?GCGATTCTCCTGCCTCAGCCTCCT	.	.	.
TALL071	RP11-460N20.4(2926),RP11-460N20.5(2397)	RP11-479O9.2	./.	+/.	7:65081706	7:65773650	intergenic	exon	deletion	downstream	upstream	4	2	0	20	16	medium	.	.	duplicates(1)	.	.	.	.
TALL071	ZNF257	RP11-678G14.4(33420),RP11-678G14.5(6785)	+/+	./-	19:22052635	19:21628048	splice-site	intergenic	inversion	downstream	downstream	2	0	1	433	26	medium	.	.	.	CTAGCCCGAGCTGCAGGTCTCGTCTTCCCTGGTCTGTGTCCTCTTCTCCTAGGGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTGGGAGATCCCCAGCTAAGACGCCAGGTCCTCCTGGAAGCCTAGAAATG|ACAAATTCTACCCCATGTTACCCTGATTCAGAGACTTCCCATCCTCAGTACTTCTTTAGAGCACTGGCCTTATATTCCCTGC	out-of-frame	M|tnstpcypdsetshpqyffralalysl	.
TALL071	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	1	0	355	48	medium	.	.	low_entropy(2),mismatches(4)	GGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCT	.	.	.
TALL071	CECR5	KIAA1586	-/-	+/+	22:17159126	6:57047335	splice-site	CDS	translocation	upstream	upstream	0	2	0	66	23	medium	.	.	.	GGGCTCCAGGGCCGCCCCGCCtGCAGGTGCTATGCTGTGGGCCCCGCTCAG|CTGGCCCTGAGGCATCTGAGTCAACAACGGATGAAAATGAAGACGACATTCAGTTTGTCAGT___GAAGGACCATCGAGACCTGTTCTTGAATACATCGATCTGGTCTGTGGTGATGATGAAAAC	out-of-frame	GLQGRPAcRCYAVGPAQ|lalrhlsqqrmkmkttfslsvkdhrdlflntsiwsvvmmk	.
TALL071	MIR17HG	KLF5	+/+	+/+	13:91347959	13:73061861	splice-site	splice-site	duplication	downstream	upstream	0	2	0	15	31	medium	.	.	.	GGCGGGAGCAGGAGCCCGCGGCCGGCCAGCCGAAGATGGTGGCGGCTACTCCTCCTG|ACAAGATGTGAAATGGAGAAGTATCTGACACCTCAGCTTCCTCCAGTTCCTATAATTCCAGAGCATAAAAAGTATAGACGAGACAGTGCCTCAGTCGTAGACCAGTTCTTCACTGACACTGAAGGGTTACCTTACAGTATCAACATGAACGTCTTCCTCCCTGACATCACTCACCTGAGAACTGGCCTCTACAAATCCCAGAGACCGTGCGTAACACACATCAAGACAGAACCTGTTGCCATTTTCAGCCACCAGAGTGAAAC	.	.	.
TALL071	MTND2P28	SSU72	+/+	-/+	1:630555	1:1560813	exon	intron	deletion/5'-5'	downstream	upstream	28	0	0	11700	30	low	.	.	duplicates(137),inconsistently_clipped(17),low_entropy(73),mismappers(22),mismatches(28)	CTAATTTCCTT...CTACTACTCAACTTAAACTCCAGCACCACAACCCTACTACTATCTCGCACCTGAAACAAGaTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCgTCCCCACCATCATAGCCAcCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCC|CCATATCTAAcAA?gTAAaAATAA	.	.	.
TALL071	RPS4XP9(387239),RSPO3(47518)	RSPO3	./.	+/.	6:127071086	6:127150498	intergenic	CDS	deletion/read-through	downstream	upstream	1	4	14	488	61	low	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(3)	.	.	.	.
TALL071	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	4	4	1	1707	507	low	.	.	duplicates(2),low_entropy(1),mismatches(1)	GTTGTCACAGTGAGGCTCTTTGGGCTGTGCGGCACCTCATGACCATATTGGCTACACCCATTGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTTGACCCTGTGAGACCCTAAGGACCCAGCCCTCTCCTAGCCTGTGG	out-of-frame	chsealwavrhlmtilatpivfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssiclhfdpvrp*	.
TALL071	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	2	4	2	17	26	low	.	.	.	AGtCACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTgAATTACCTCATTGTGGATCTGCCAGGGCCAAG...TTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAGG	.	.	.
TALL071	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	5	1	2	245	290	low	.	.	low_entropy(1),mismatches(2)	CCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL071	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	12	290	low	.	.	duplicates(1),read_through(7)	GAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAA...G___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACaATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATA	out-of-frame	KTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL071	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	3	1	241	372	low	.	.	.	GCTGCTCCCGTGACTCAGTGACATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAG...CGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGA	.	.	.
TALL071	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	6	0	1	71	33	low	.	.	duplicates(2),mismappers(3),mismatches(1)	CTACATCAACCTAGTATCAATAG___GGTATCGAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___TTCTGCAGGCTGGGAAGTCCAAGATCAGGGTACCAGTATCTGGTATCTGCTGAGGGCCTTTTTG	out-of-frame	YINLVSIGYRGTKPDSLFKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL071	KLRB1	RP11-705C15.2	-/+	+/+	12:9607802	12:9633425	CDS	exon	deletion/read-through/3'-3'	downstream	upstream	3	4	0	90	120	low	.	.	.	G___...CTACTGCTCATCTTTAAAGCAATGATTTAAAGCCATAAATGTAACAGGAAGATCTAATTCTGGAAGACATACAAATGCCGAAAGGAAAATTAAAGCCACTTACCCCGAGGAAGAGATGAAGGTGAAGAACTTTCTGGGCCTGAGTCTGTGG|ATGGGTTCTCTACCTGGCCTGTGCCTTGTTGCCTGTTCCTTTACTGTACATGTGATGACAAGAAAAGAAGATGGACCCTCCATGTTGAACATGCCTGGCCCTCAG___ATGAGTAAACAGGAAGACTGAACTGTTTCTCAACTCCCAAATTCAGGCTTCTTTCA...ATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAG___AATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAAT	.	.	.
TALL071	ANKRD36	RP11-734K23.9	+/+	+/+	2:97228278	2:97284044	intron	splice-site	deletion/read-through	downstream	upstream	0	5	1	8	185	low	.	.	duplicates(1),mismatches(2)	CCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGtGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAGGCAG___ACACTACCCAAAGCAGTcCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGtCAG___AGATAGAATCTCACTATGTTGACCAGGCTGG	.	.	.
TALL071	ANKRD36	RP11-734K23.9	+/+	+/+	2:97250173	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	299	396	low	.	.	.	TGAGAAGTCAA___TTTCAAGAAATACAGGATCAACTTACAGCTACTATAAGATGTACTAAGGAGATGGAAGGCGACACACAAAA___GCTTGAAGTAGAACATGTGATGATGAGAAAAATTATTAAAA...CAAATTGAGCGGCTTGAGAAAATCCTGCAGCATTCAAGTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAA	out-of-frame	QIERLEKILQHSSLMLQVFES*mk|flhrhypkqcfttvadrpenfhlkqqselqrqvtnqcgg	.
TALL071	ANKRD36	RP11-734K23.9	+/+	+/+	2:97250173	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	299	185	low	.	.	.	TAAAAAACAGGATGACCAAATTGAGCGGCTTGAGAAAATCCTGCAGCATTCAAGTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAtGACACTGAAGAAGGAGTGAGC	out-of-frame	KKQDDQIERLEKILQHSSLMLQVFES*mk|vmasaekgrkpmr*	.
TALL071	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	0	101	130	low	.	.	duplicates(1),mismatches(1)	GACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTT	out-of-frame	LTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL071	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	111	130	low	.	.	.	CTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAAT...GTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTT[t]CAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGC	out-of-frame	VYIYDGELVSKNGFFsgi*ptdldsscss|asrnrfs*	.
TALL071	IL10RB	IL10RB(10951),AP000295.10(1306)	+/+	./+	21:33288261	21:33308185	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	2	190	9	low	.	.	duplicates(1)	CTTGGACTATGAAGAATGTGTATAACTCATGGACTTATAATGTGCAATACTGGAAAAACGGTACTGATGAAAAG___TTTCAAATTACTCCCCAGTATGACTTTGAGGTCCTCAGAAACCTGGAGCCATGGACAACTTATTGTGTTCAAGTTCGAGGGTTTCTTCCTGATCGGAACAAAGCTGGGGAATGGAGTGAGCCTGTCTGTGAGCAAACAACCCATGACG___AAACGGTCCCCTCCTGGgTGGTGGCCGTCATCCTCATGGCCTCGGTCTTCATGGTCTGCCTGGCACTCCTCGGCTGCTTCGCCTTGCTGTGGTGCGTTTACAAGAAGACAAAGTACGCCTTCTCCCCTAGGAATTCTCTTCCACAGCACCTGAAAGAG|CTCTCTGGCATCAATTTTTCCACTTCTCAGAAACACTTTGGCCCACAAATTCCCAAAGGAACCTTGTTCTTCATTCTGGAAAACACGATGCCAACATATCAGAATAAAGGACAGATAGGAGCTTTTGCTTCAAA	out-of-frame	WTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWvVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE|lsginfstsqkhfgpqipkgtlffilentmptyqnkgqigafas	.
TALL071	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	2	2	148	47	low	.	.	duplicates(1),mismatches(2)	CCTCTGCCCCAACATGCCCTCTGCATGTGACCGTCATGCCCTGGATGGAGCCACTCCTGGCTCACCCCACCTGCACTGCACTGTCCCCAGAGAGCCACCCCTCCACCCACTCAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAACTGCAGCATATAGTATCATGAGCTAATAAACAATTCC	.	.	.
TALL071	DGKG	TRA2B	-/-	-/-	3:186107023	3:185923975	intron	CDS	deletion/read-through	upstream	downstream	0	0	5	1	2989	low	.	.	low_entropy(2),mismatches(2)	CGGGGGAAA...|...GATCCTAACTGTTGTCTTGGAGTATTTGGGCTGAGCTTGTACACCACAGAAAGAGATCTAAGAGAAGTGTTCTCTAAATATGGTCCCATTGCCGATGTGTCTATTGTATATGACCAGCAGTCTAG	.	.	.
TALL071	FRMPD4	TMSB4X	+/+	+/+	X:12634232	X:12976914	intron	3'UTR	deletion/read-through	downstream	upstream	0	0	5	0	65535	low	.	.	low_entropy(3),mismappers(3),mismatches(21)	CTCTTTTAGCT...|...CAAGTTTAAATGACTGTGCTGCCCCTTTCACATCAAAGAACTACTGACAACGAAGGCCGCGCCTGCCTTTCCCATCTGTCTATCTATCTGGCTGGCAGGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGAAGTGGGGTGGAAGAAGTGGGGTGGGACGACAGTGAAATCTAGAGTAAAACCAAGCTGGCCCAAGGTGTCCTGCAGGCTGTAATGCAGTTTAATCAGAGTGCCATTTTTTTTTTTGTTCAAATGATTTTAATTATTGGAATGCACAATTTTTTTAATATGC	.	.	.
TALL071	ESYT2	NCAPG2(4226),AC019084.7(10675)	-/-	./-	7:158734136	7:158709055	3'UTR	intergenic	deletion/read-through	upstream	downstream	2	3	0	789	93	low	.	.	low_entropy(1),mismatches(2)	CAAAG___CTTTGATTTCAGTGTTTCGTTACCAGAAGTGCAGAGGAGAACGCTCGACGTTGCCGTGAAGAACAGcGGCGGCTTCCTGTCCAAAGACAAAGGGCTCCTTGGCAAA___GTATTGGTTGCTCTGGCATCTGAAGAACTTGCCAAAGGCTGGACCCAGTG___GTATGACCTCACGGAAGATGGGACGAGGCCTCAGGCGATGACATAGCCGCAGCAGGCAGGAGGtGTCCTCTTCAGCGTAGCTCTCCACCTCTACCCGGAACACACCCTCTCACAGAC|GCAAGGGAAGGGTTTCTGAGAAGCTGATAACAATGGTTTCCTTTGGAGCAGAGGGCTGTGTCCAGGGGGTCTCAGAAGACTCTTCTGTATACCTCTTCTTGCCATGTGAGTTTGAACCGTGTG...___ATGTCTGCCAAA	out-of-frame	QSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDGTRPQAMT*pqqaggvlfsvalhlypehtlsqt|qgkgf*	.
TALL071	ZNF208	RP11-420K14.1	-/-	+/-	19:22010792	19:21640621	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	0	4	0	223	423	low	.	.	duplicates(11),low_entropy(1),mismappers(10),mismatches(159)	CATTTCTAGGCTTCCAGGAcGACCTGGCGTCTTAGCTGGGGATCTCCCAATACCTGCAGG...GTCTCGTCtTccCTGgTcTGTGTCCTCTtCTCCTAGgGgCCCAGCCTCTGTGGCCCTgTGACCTGCAGGTATTGGGAGATCCcCAgCTAAGaCGCCAGGtCCtCCTGGAAGCCTAGAAATG|AGCATCACTTGAACCcGGGAGGCGGAGGTTGCTGTGAGCCAAGATCATGACACTGCACTCCAGCTTGGGCAACAAGAGCAAAATGCTGTCTCAAAAAAAAAACAAAAAAACAAAACAAAACAAAAAAAACAACTTGAAGAAGTGTTTGCTCTATCAAATTCACAGACACCAATGCAAAACTATATTGTGCCTATTGTCAATGCTTCTATTTTTACGTAGGACTGGAAGTAAGTGGCAGAATCATGAGTCAAAAACATTTTTGAAAAGCCACTGAAATTGAAGACAAATAAGTAAAAAGTTA	out-of-frame	M|sit*	.
TALL071	IKBKG	CTAG1A	+/+	+/+	X:154556376	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	0	79	6	low	.	.	duplicates(1)	CCTCATGTGCAAGTTCCAGGAGGCCAGGAAACTGGTGGAGAGACTCGGCCTGGAGAAGCTCGATCTGAAGAGGCAGAAGGAGCAGGCTCTGCGGGAGGTGGAGCACCTGAAGAGATGCCAGCAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTCATTGTGGGGGCCTGATTGTTTGTCGCTGGAGGAGGAC	out-of-frame	LMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQ|ptdccrppptaalhqllspaafpvdvdhavlsarvfgsaslraealspawrpflghassprewsqhewpvhcgglivcrwrr	.
TALL071	IKBKG	CTAG1A	+/+	+/+	X:154552189	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	172	6	low	.	.	.	TCAGGACGTACTGGGCGAAGAGTCTCCTCTGGGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTG	out-of-frame	QDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQELR|ad*	.
TALL071	ASNS	AC079781.7(371),AC079781.8(29644)	-/.	./.	7:97872449	7:97908795	5'UTR	intergenic	deletion/read-through	downstream	upstream	0	3	1	38	7	low	.	.	.	.	.	.	.
TALL071	LINC01226	LINC01225	+/.	+/.	1:31523619	1:31524543	exon	intron	duplication	upstream	downstream	2	1	1	80	54	low	.	.	.	.	.	.	.
TALL071	CAPZB	PQLC2	-/-	+/-	1:19344358	1:19327883	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	2	2	0	1305	63	low	.	.	low_entropy(1),mismatches(3)	CCAACATCGGGCGCCTGGTAGAG___GACATGGAAAATAAAATCAGAAGTACGCTGAACGAGATCTACTTTGGAAAAACAAAGGATATCGTCAATGGGCTGAG|CTCTCGTCTGCACAGCCTAGAACATTCCTCTCCTGCCTTCGCCTGACTTCTCCTACTCTGTCAAGTCACAGGTTCAATGAGACTTATAGGGGCCTTTGCTGCCCCTCTAACCAGGACGGTCCCTGGCTAGACGCTCTTGTTGTTTTTCTCTGCAGCAC	out-of-frame	NIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLs|srlhslehsspafa*	.
TALL071	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	19	4	low	.	.	.	TCTACCTGAACGTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAA...AGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCC-GCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTC	out-of-frame	EHVASTSAALPaacprrcprscldk|s*	.
TALL071	REEP1	CAPG	-/-	-/-	2:86293289	2:85399247	intron	CDS	deletion	upstream	downstream	0	0	3	0	2741	low	.	.	mismappers(1),mismatches(1)	CCGGCCATGT...|...GGAACGCAACAAGGCGAGGGACCTGGCCCTGGCCATCCGGGACAGTGAGCGACAGGGCAAGGCCCAGGTGGAGATTGTCACTGATGGGGAGGAGCCTGCTGAGATGATCCAG___GTCCTGGGCCCCAAGCCTGCTCTGAAGGAGGGCAACCCTtAGGAAGACCTC	.	.	.
TALL071	HECW1	STK17A	+/+	+/+	7:43440893	7:43584546	intron	intron	deletion/read-through	downstream	upstream	0	0	3	0	17	low	.	.	mismatches(4)	CGGGGCTTG...|...GGGCCTGACAGTTGGAACAGCCTTCAGCTGGGGTCTTGGAAAGGCAAACAATGTAACATTGGTTATAATGTTAAAAACACACTGCCTTACACATATTAAGGTAACTTTTG	.	.	.
TALL071	LINC01097	RAB28	-/-	-/-	4:13527537	4:13479526	exon	splice-site	deletion/read-through	upstream	downstream	2	1	0	15	168	low	.	.	.	CGCGGGTCCCACCGCGCAGGACGCCCCTTCCTGCTTCCGACGTCTGCTGTGGATCACACGCGGTCGCTGCCAAAGCCTCCATTTCGGTTCTGACCCAGTGACTTTGGGGACGCCCAGGGAGGAGATGTGGAGAGGATGTGGCCAAGGTGAACCAGCCAGT|ACCTCCTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGATAACATTGCCAG___GAA	.	.	.
TALL071	SMEK2	RNU6-634P(4977),CFAP36(14572)	-/-	./-	2:55550030	2:55505032	intron	intergenic	deletion/read-through	upstream	downstream	0	0	3	3	1	low	.	.	.	CCAGTGCTGCTAATGGAACAAACAGTAAATCTGTAGTGGCTCAGATACCACCAGCAACTTCTAATGGATCCTCTTCCAAAACCACAAACTTGCCTACGTCAGTAACAGCCACCAAG___AA...|...TCATATTGGTAATATATTTTCCCTCAAAGTTCATTAACTTATTCACATCTGCTGCTATTGTAAATTAGGATTCCTTTTTAATTACTTATTTCAAACTGAGTATTTTTGGTACCTGTGAATGGC	.	.	.
TALL071	PCBP3	PCBP3(31640),AJ011932.1(395)	+/+	./+	21:45940199	21:45974094	splice-site	intergenic	deletion/read-through	downstream	upstream	0	2	1	379	3	low	.	.	.	TGGACGCCAAGGGACCAAAATCAATGAAATTCGACAGATGTCTGGAGCTCAGATCAAAATCGCCAACGCCACGGAAGGGTCCTCAGAGCGTCAGATCACCATCACGGGGACCCCGGCCAACATCAGCCTTGCCCAGTATCTCATCAACGCCAG|TTACAGGCGATGCTGCCGGAAACGTGTGTTTTCCTATCTAGGAGTCAGTCTGTCGCAGACCGATTCCTGGATCGCCGAGGTCGCCCACTCTCCCCAGAAGCCTGCTCCCTCCCGACCCGACCGGTGG	out-of-frame	GRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINAs|yrrccrkrvfsylgvslsqtdswiaevahspqkpapsrpdr	.
TALL071	EIF1B-AS1	MYRIP	-/-	+/-	3:40301236	3:40154227	intron	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	15	2	low	.	.	mismappers(1)	GTCGACGCTCAGGcCTAATCTCTATGAGTCACCCTCGAGGCCCCGGGTAAT___ATTGGGTGGATCACAAGAACTAATCTTTCATGATTTGGAAACCGGAAGGAAAGAAGCACTTTTGTAGCTGACTTACCTCAATGACATGACCAGTGTCTGAGCCTACAACTGCGCTATCTTCCCTGGATTTTTCTTCACCTTTTCgTTACTCATGAGCCAGG...|...ACTGATGGCAGTACGAG___ATGGAGCTAAGATTGGAACTGAGGTCTGGCTATAAAGCTGCCTTTATGTCCATCGCATCCTAAGGGCTGCTGTTGCTCTTCTGCCTCTACACTGATGGACTACGTCAG	.	.	.
TALL071	PDZD2	SUB1	+/+	+/+	5:31941695	5:32591590	intron	CDS	deletion	downstream	upstream	0	0	2	0	5760	low	.	.	low_entropy(1),mismappers(3),mismatches(6)	CTTTGTGTGATG...|...GAAAAACCTGTAAAGAAACAAAAGACAGGTGAGACTTCGAGAGCCCTGTCATCTTCTAAACAGAGCAGCAGCAGCAGAGATGATAACATGTTTCAG___ATTGGGAAAATGAGGTACGTTAGTGTTCG	.	.	.
TALL071	GAPDHP1	BCOR	-/-	-/-	X:39787137	X:40085155	exon	intron	deletion/read-through	downstream	upstream	0	0	2	2356	3	low	.	.	mismappers(1),mismatches(1)	...GAGTAAGACCCCTGGACCACCAGCaCCAGcAAGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTTCC|...GCGCAAATGAGG	.	.	.
TALL071	ZMIZ1	PPIF	+/+	+/+	10:79245685	10:79351540	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	1	346	low	.	.	mismappers(2)	CGGAAGTCCT...|...CCGCTTTCCTGACGAGAACTTTACACTGAAGCACGTGGGGCCAG___GTGTCCTGTCCATGGCTAATGCTGGTCCTAACACCAACGGCTCCCAGTTCTTCATCTGCACCATAAAGACAGACTG___GTTGG	.	.	.
TALL071	RP1-63G5.5	EIF3D	-/-	-/-	22:37405090	22:36511880	intron	intron	deletion	upstream	downstream	0	0	2	1	192	low	.	.	mismappers(2)	AGAGCcAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAT...|...GGACCAGGTATCACCATTTAATTGACATTTGATCCCAAGTGTTGCTGTCTCTGTGCTGCCCTGCTCTGACCACTGATATCCCTTCCCCTGTTAGTTATGTGTCTCGGTACCACGTGAAAGACTCC	.	.	.
TALL071	ELFN2	EIF3D	-/-	-/-	22:37405090	22:36511880	intron	intron	deletion	upstream	downstream	0	0	2	1	192	low	.	.	mismappers(2)	AGAGCcAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAT...|...GGACCAGGTATCACCATTTAATTGACATTTGATCCCAAGTGTTGCTGTCTCTGTGCTGCCCTGCTCTGACCACTGATATCCCTTCCCCTGTTAGTTATGTGTCTCGGTACCACGTGAAAGACTCC	.	.	.
TALL071	SH3D19	DCLK2	-/-	+/-	4:151102937	4:150194190	exon	intron	deletion/5'-5'	upstream	downstream	0	0	2	41226	0	low	.	.	mismappers(1),mismatches(2)	TTCAAGTCATTTGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTCCGGATTTGGCGGACCTGTTGGTGCTGAGCATAAGAGGTCTTCCGTATCTGATTGTTGCGTTTTTTAGTAAAACC...|...CTAAACATCG	.	.	.
TALL071	RAB40B	CCDC57	-/-	-/-	17:82670853	17:82156895	intron	exon	deletion	upstream	downstream	0	0	2	0	100	low	.	.	mismappers(1),mismatches(1)	CGTAGGGC...|...TGGGGAGCAGATCCCCAGGGACTCAGGCTGGAATAGAGTGGACTGAGGAAGATGCGGCCGTGGCTGTCTCAGGCTCCAGGACAGTGAGGAGCAGGCCAGAGCTGCCTTGGCATGGGATGGGCA	.	.	.
TALL071	NCALD	ZNF706	-/-	-/-	8:101750576	8:101204715	intron	5'UTR	deletion	upstream	downstream	0	0	2	0	472	low	.	.	low_entropy(1),mismappers(1),mismatches(6)	CTTCTTTTTGGC...|...TCCACTACTTCCCTCTTTGCAGCCCCCTCGGAAAACCACACTGAGAGTTGCATTAAAA-CCAGCATGTAGGTATTTGTAAGTGACTTTTTCCCTCCAGTTTGTCGCATTTAATCAAGGAGCG	.	.	.
TALL071	MYT1L	PXDN	-/-	-/-	2:1939136	2:1662160	intron	CDS	deletion/read-through	upstream	downstream	0	0	2	0	168	low	.	.	mismappers(1),mismatches(9)	CGTCTGAGT...|...CCAGCGACACAACAGTGGAGGTGGGCGCCAATGTGCAGCTCCCGTGCAGCTCCCAGGGCGAGCCCGAGCCAGCCATCACCTGGAACAAG___GATGGGGTTCAGGTGACAGAAAGTGGAAAATTTCAC	.	.	.
TALL071	RGS22	COX6C	-/-	-/-	8:99968359	8:99893443	intron	5'UTR	deletion/read-through	upstream	downstream	0	0	2	0	8	low	.	.	mismappers(1),mismatches(1)	CGTTTTGTG...|...G___TTTCGTGTGGCTGATCAAAGAAAGAAGGCATACGCAGATTTCTACAGAAACTACGATGTCATGAAAGATTTTGAGGAGATGAGGAAGGCTGGTATCTTTCAGAGTGTAAAGTAA	.	.	.
TALL071	NOC4L	FBRSL1	+/+	+/+	12:132146240	12:132507386	CDS	exon	deletion/read-through	downstream	upstream	0	0	2	3	0	low	.	.	mismappers(1)	GAAGTACAAGGTGTGGATGAGACACCGCTATCACAGCTGCTGCAATCGCTTGGGAGAGCTCCTGGGCCACCCCTCCTTTCAGGTCAAG___A...|...AAG___AAGGATATGGCCCTGAAGCCACATGAGCGGAAGGAGAAGTGGGAGCGTCGTCTCATCAAGAAGCCCCGGGAGTCGGAAACCTGC	.	.	.
TALL071	FBRSL1	NOC4L	+/+	+/+	12:132508350	12:132151258	splice-site	splice-site	duplication	downstream	upstream	1	0	0	90	355	low	.	.	.	GCGTCGTCTaATCAAGAAGCCCCGGGAGTCGGAAACCTGCCCCCCTGCGGAGCCCAGTGAGAACAGGCGGCCCCTGGAGGCAGGCAGCCCCGGGCAGGACCTCGAACCCGCCTGCGATGGGGCG...GTCCCACTGCAGCCCTCCAAGCAG|GGAGTACCCTGACTTCTACCGGAAGCTCTACGGCCTCTTGGACCCCTCTGTCTTTCACGTCAAGTACCGCGCCCGCTTCTTCCACCTGGCTGACCTCTTCC	out-of-frame	VPLQPSKQ|gvp*	.
TALL071	DNAH14	SRP9	+/.	+/.	1:225364651	1:225788268	intron	intron	deletion	downstream	upstream	0	0	2	0	171	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	.	.	.	.
TALL071	R3HDM1	UBXN4	+/.	+/.	2:135717321	2:135746025	intron	intron	deletion/read-through	downstream	upstream	0	0	2	4	12	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	.	.	.	.
TALL071	DNAH14	H3F3A	+/+	+/+	1:225202610	1:226065808	intron	CDS	deletion	downstream	upstream	0	0	2	0	70	low	.	.	low_entropy(1),mismappers(1),mismatches(2)	CGGCTACC...|...AG___GATTTCTACCCACTTCTAGAATATCTTAAGAACGAATCTCGGAATATTAAGGACTTTTGCTTTTAATACCTGTGGAATAGGTAAGATGCGAGGGACTACTTGCATAGAATAGAAACATTTTTT	.	.	.
TALL071	PRKRIP1	ORAI2	+/+	+/+	7:102399648	7:102438944	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	474	206	low	.	.	low_entropy(1),mismappers(1),mismatches(3)	AGTGAATGGGCACCTCGACCTCCCCCAGAATTTGTCCGAGATGTCATGG___GTTCAAGTGCTGGGGCCGGCAGTGGAGAGTTCCACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGACAGGACTACATGGATGCCATGtCTGAGAAG|CCTGGCTCCCACCATGAGTGCTGAGCTTAACGTGCCTATCGACCCCTCTGCTCCTGCCTGCCCTGAGCCCGGCCATAAGGGCATGGATTACCGGGACTGGGTCCGCCGCAGCTACCTGGAACTGGTC	out-of-frame	SEWAPRPPPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMsEK|pgshhec*	.
TALL071	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	51	14	low	.	.	.	GGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAAC	out-of-frame	GSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL071	R3HDM2	NACA	-/-	-/-	12:57303025	12:56713068	intron	CDS	deletion	upstream	downstream	0	0	2	0	277	low	.	.	mismappers(1),mismatches(3)	CGTAAGTGTGC...|...GGAAGAG___GTCGATGAAACAGGTGTAGAAGTTAAGGACATTGAATTGGTCATGTCACAAGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCGATTATG___GAATTAACAATGT	.	.	.
TALL071	SLC12A7	GABRD	-/-	+/+	5:1057471	1:2024942	splice-site	splice-site	translocation	upstream	upstream	1	1	0	285	25	low	.	.	duplicates(1)	AACACCGCGTCCCACACCGCGGCGGCAGCCAGGACCCAAGCGCCGCCTACGCCAGACAAGGTGCAGATGACCTGGACCAGGGAGAAGCTGATCGCTGAGAAGTACAGGAGCAGAGACACCAGCCTATCcGGTTTCAAAGACCTCTTCAGCATGAAGCC|AGCGATGAATGACATCGGCGACTACGTGGGCTCCAACCTGGAGATCTCCTGGCTCCCCAACCTGGACGGGCTGATAGCCGGCTACG...TCCGGCCTGGCATCGGAG___GCCCCCCCGTGAATGTGGCtCTTGCCCTGGAGGTGGCCAGCATCGACCACATCTCAGAGGCCAACATG___GAGTACACCATGACGGTGTTCCTGCACCAGAGCTGGC	in-frame	NTASHTAAAARTQAPPTPDKVQMTWTREKLIAEKYRSRDTSLSGFKDLFSMKp|AMNDIGDYVGSNLEISWLPNLDGLIAGY	.
TALL071	ELOVL6	LEF1	-/-	-/-	4:110198247	4:108165163	splice-site	splice-site	deletion	upstream	downstream	0	1	1	118	631	low	.	.	.	CACGTAGCGACTCCGAAGATCAGCCCCAATGAACATGTCAGTGTTGACTT-ACAAGAATATGAATTCGAAAAGCAGTTCAACGAGAATGAAGCCATCCAATGGATGCAGGAAAACTG|GTGGCCAGACAAGCACAAACaTCTCAGGAGCCCTACCACGACAAGGCCAGAGAACACCCCGATGACG___GA...ACAAGGGACCCTCCTACTCGAGTTATTCCGGGTACATAATGATGCCAAATATGAATAACGACCCATACATGTCAAATGGATCTCTTTCTCCACCCATCCCGAGAACA___TCAAATAAAGTGCCCG	out-of-frame	MNMSVLTyknmnskssstrmkpsngcrkt|ggqtstnisgalprqgqrtpr*	.
TALL071	HDAC4	NDUFA10	-/-	-/-	2:239352678	2:239990182	splice-site	splice-site	duplication	upstream	downstream	1	0	0	12	779	low	.	.	.	CCGGTACTTGTATGTGTTGGTGGGAGTTTGGAGCTCGTTGGAGCTATCGTTTCCGTGGAAATTTTGAGCCATTTCGAATCACTTAAAGGAGTGGACATTGCTAGCAATGAGCTCCCAAAGCCATCCAG|GGTTCAGGATAAGTTTGAGGTGCT	out-of-frame	MSSQSHP|gfrislrc	.
TALL071	SUN1	PRKAR1B	+/+	-/-	7:866067	7:551470	splice-site	splice-site	inversion	downstream	downstream	0	1	0	149	295	low	.	.	.	CCAAAACGGCGCTGATGAGTCTGTTTGGGATCCCGCTGTGGTACTTCTCGCAGTCCCCGCGCGTGGTCATCCAG|GGCACCGCGTCCGTGCTGCAGCGCCGGTCCCCCAATGAGGAGTACGTGG...GGGGCGCCTGGGACCCTCTGACTACTTCG___GGGAGATTGCACTGCTGCTGAACCGGCCCCGGGCGGCCACTGTCGTGGCCCGGGGGCCCCTCAAGTGTGTGAAGCTGGACCGGCCCCGCTTCGAG	in-frame	KTALMSLFGIPLWYFSQSPRVVIQ|GTASVLQRRSPNEEYV	.
TALL071	PRKAR1B	SUN1	-/-	+/+	7:677229	7:895334	splice-site	splice-site	inversion	upstream	upstream	0	1	0	121	700	low	.	.	.	CAAAACCATGACTGCGCTGGCCAAGGCCATCTCCAAGAACGTGCTCTTCGCTCACCTGGATGACAACGAGAGGAG|GGAACCTTCTGACCAGCCTCATGGGCTCCTCAGAGCAGGAGGATGGGGAGGAGAGCCCCAGCGACGGCAGCCCCATCGAGCTGGACTGAACTGGCCAGGCCACGTGGAGACACCACGGTCaAC	out-of-frame	KTMTALAKAISKNVLFAHLDDNERr|epsdqphgllraggwggepqrrqphraglnwpghvetprs	.
TALL071	SPPL2B	DAZAP1	+/+	+/+	19:2328775	19:1434737	splice-site	splice-site	duplication	downstream	upstream	0	1	0	270	1726	low	.	.	.	CGGCTGCGCTGGCGCGGCTTTTGGCGGCCTTTCTGCTCCTCGCGGCCCAG|CAGGTTACGGGCAGGACTTGAGTGGCTTCGGACAGGGCTTCTCAGACCCCAGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTTTGGACGAGGGCAGAACCACAACGTGCAAGGGTTCCA	out-of-frame	AALARLLAAFLLLAAQ|qvtgrt*	.
TALL071	PPP2R3B	GRAMD4	-/-	+/+	X:345516	22:46658187	splice-site	splice-site	translocation	upstream	upstream	1	0	0	306	104	low	.	.	.	TGGCGCTGCTGGAGGAGGAGGCGGACATCAACCAGCTGgCCGAATTCTTCTCGgACGAGCATTTCTACGTCATCTACTGCAAGTTCTGGGAGCTGGACACGGACCACGACCTGCTCATCGACGCGGACGACCTGGCGCGGCACAATGACCACG|AGGAGGAGCTCCGGAAGCTGCGAGAAGAAACCA	in-frame	ALLEEEADINQLaEFFSdEHFYVIYCKFWELDTDHDLLIDADDLARHNDH|eEELRKLREET	.
TALL071	GRAMD4	PPP2R3B	+/+	-/-	22:46626961	X:334517	splice-site	splice-site	translocation	downstream	downstream	0	1	0	143	609	low	.	.	duplicates(1)	CGACGAAATCCCCCTGAAGGTACCGCGGACCTCGCCCCGGGACAGCGAGGAGCTGAGGGACCCT|GTTCGAGGCCGAGCTCAGCCCcGTGGAGCAGAAGCTGAGTGCGCTGCGCTCCCCGCTGGCCCAGAGGCCCTTCTTCGAGGCGCCCTCACCGCTGGGCGCCGTGGACCTGTACGAGTACG	out-of-frame	DEIPLKVPRTSPRDSEELRDP|vrgraqprgaeaecaalpagpeallrgaltagrrgpvrv	.
TALL071	CDKAL1	CASC15	+/+	+/+	6:20548705	6:21978945	splice-site	splice-site	deletion	downstream	upstream	0	1	0	117	489	low	.	.	.	GAAAATTTGGATACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAG|GTAAAATCTACTGGTGGAGTCACTCCATT...TGATTTGAAAGTTTCTGAGAAAATCTTCAGCTCAGACTTGAGGGTCAACTTTACCAGCTGAAG___TGACTACATCCTGCCTGCTTTCAGCTCCAGTGGAAAATGCATTAATCCCAGAGTCTCC	out-of-frame	KIWIRTWGCSHNNSDGEYMAGQLAAYGYKIT|gkiywwshs	.
TALL071	CASC15	CDKAL1	+/+	+/+	6:21802740	6:21108401	splice-site	splice-site	duplication	downstream	upstream	0	1	0	288	26	low	.	.	duplicates(1)	CTGAAGCATTATCACAAGACAGTCAGAATGACTGATGAGTGCTCTTCAG|AAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCACAAGaTtgGtGAA...GATTCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAG___GTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAAGATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAG	.	.	.
TALL071	PSAP	MICU1	-/-	-/-	10:71851182	10:72408037	splice-site	splice-site	duplication	upstream	downstream	0	1	0	564	171	low	.	.	.	CGGCGCTATGTACGCCCTCTTCCTCCTGGCCAGCCTCCTGGGCGCGG|GGTCTGACATTTCAGGAGGTGGAGAACTTCTTTACTTTCCTAAAGAACATTAATGATGTGGACACTGCATTGAGTTTTTACCATATGGCTGGAGCATCTCTTGATAAAG___TGACCATGCAGCAGGTGGCCAGGACAGTGGCTAAAGTGGAGCTCTCAGACCACG	out-of-frame	MYALFLLASLLGA|gsdisgggellyfpkeh*	.
TALL071	CTBP1	MAEA	-/-	+/+	4:1225360	4:1339074	splice-site	splice-site	inversion	upstream	upstream	0	1	0	768	321	low	.	.	.	GCGAGGTGGCGTCCGGCGCTGCCAGGATCCGCGGGGAGACCTTGGGCATCATCGGACTTG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCGTGTGCCCGAGAACCAAAGAAGTCTTCCACTTCTCACAAGCCGAGAAGGTGTACATCATGTAGGCCCCACGTCGTGAAGCGCACGCCTCGGGGACG	out-of-frame	EVASGAARIRGETLGIIGL|vsafypsr*	.
TALL071	CTBP1	MAEA	-/-	+/+	4:1228199	4:1339074	splice-site	splice-site	inversion	upstream	upstream	1	0	0	811	321	low	.	.	.	CCGGGACTGCACAGTGGAGATGCCCATCCTGAAGGACGTGGCCACTGTGGCCTTCTGCGACGCGCAGTCCACGCAGGAGATCCATGAGAAG___GTCCTGAACGAGGCTGTGGGGGCCCTG...GAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG|TCTCTGCTTTCTATCCGTCAAGATGATAAAGTCG	out-of-frame	EDLEKFKALRIIVRIGSGFDNIDIKSAGDL|vsafypsr*	.
TALL071	CTBP1	MAEA	-/-	+/+	4:1228199	4:1332757	splice-site	splice-site	inversion	upstream	upstream	0	1	0	811	145	low	.	.	.	GAAGTTCAAAGCCCTCCGCATCATCGTCtGGATTGGCAGTGGTTTTGACAACATCGACATCAAGTCGGCCGGGGATTTAG|ACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGG...GCTGATCCAGCAGTTCCGGTACGACAACTACCGACTACACCAGCTGGGAAACAATTCTGTGTTCACCCTCACCCTGCAGGCTGGCCTCTCAGCCATCAAGACACCGTATCCTACCTCCCGTGCGC	out-of-frame	KFKALRIIVwIGSGFDNIDIKSAGDL|dmqestsakqkgas	.
TALL071	PSPC1	ZMYM5	-/-	-/-	13:19759323	13:19852190	splice-site	splice-site	duplication	upstream	downstream	1	0	0	624	307	low	.	.	duplicates(1)	CAGCAAAACCTCCTGCACGAAAGGCTCTGGAAAGATGTGGTGATGGGGCATTCTTGCTAACAAC___GACCCCTCGTCCAGTCATTGTGGAACCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTGATGCAGAAAACTCAACAATATCATAA|GTTCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCTG	in-frame	AKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHk|figMEKCSVGGLELTEQTP	.
TALL071	PSPC1	ZMYM5	-/-	-/-	13:19782386	13:19862466	splice-site	splice-site	duplication	upstream	downstream	0	1	0	487	210	low	.	.	.	GAGGAGGACTTCAAGAGGCTCTTCGAACGCTATGGCGAGCgCAGCGAAGTCTTCATCAtCCGGGACCGTGGCTTCGGCTTCATCaGCTTG|GACCAGGAATCACCTTCAAGCCTATGTCGTG...AGcAGGAAATATCTCCATT___GTTCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCTGCTTTATTAGGGAATATGGCCATGGCAACTAGTCTCATGGACATAGG	out-of-frame	EEDFKRLFERYGErSEVFIiRDRGFGFIsL|dqespsslcr	.
TALL071	SUMO3	PTTG1IP	-/-	-/-	21:44813976	21:44851627	splice-site	splice-site	duplication	upstream	downstream	0	1	0	1371	2477	low	.	.	.	GCACACGCCGCTGAGCAAGCTGATGAAGGCCTACTGCGAGAGGCAG|GCCTGTTTAAAGAAGAAAACCCGTATGCTAGATTTGAAAACAACTAAcGCGCTCCAGCACATCAGTCCCGACGCTTCCTGTGAGGTGCACGCTCCGCAGCCCAGCCCAGCCGGGAGACCACGTGGCCATTGCGGTCTCCTGACCTTGGC	in-frame	HTPLSKLMKAYCERQ|ACLKKKTRMLDLKTTnALQHISPDASCEVHAPQPSPAGRPRGHCGLLTL	.
TALL071	SUMO3	PTTG1IP	-/-	-/-	21:44817948	21:44851627	splice-site	splice-site	duplication	upstream	downstream	0	1	0	861	2477	low	.	.	.	CCCGCGCCGCCTCCCCGCGCCGCTCGCGCAGCCATGTCCGAGGAGAAGCCCAAG|GCCTGTTTAAAGgAGAAAACCCGTATGCTAGATTTGAAAACAACTAAAGCGCTCCAGCACATCAGTCCCG...GATCACTGATCCAGAACACTTCAAGAACTCGTCAAACAGCTCGATAAGCCTTTTTGACTGTGTACATCTGTACCGGGAATAACATTCCTAGGCTGAAATTTCCACAAAGAATAGAACCTGTACC	in-frame	MSEEKPK|ACLKeKTRMLDLKTTKALQHISP	.
TALL072	RCBTB2	LPAR6	-/-	-/-	13:48501742	13:48389812	splice-site	splice-site	deletion/read-through	upstream	downstream	143	100	13	706	672	high	.	.	duplicates(49),low_entropy(14),mismappers(16),mismatches(39)	CTTAACATTCT...GTCATATCTCTACTAATCTGTCAAACAAACAAGTCATTGAAGTTGCCT___...TGTCACTCCACACACACGTCTGCGGCCAAGACGCAGGGTGGGCACGTGTACATGTGGGGCCAGTGCCGGGGTCAGTCCGTGATCCTCCCGCACCTCACCCACTTCTCCTGCACTGACGACGTGTTTGCCTGCTTTGCCACGCCCGCCGTCACGTGGCGCCTCCTCTCCGTGG___AACCTGATGACCACCTCACAGTGGCTGAGTCACTGAAGAGGGAATTTGACAACCCGGACACTGCAGACCTGAAGTTTCTAGTTGATGGAAAGTACATTTATGCACATAAAGTCCTTCTCAAGATTCG|GTGAAAACTCCAAAGCTTAACATTCTAACCACTCTAGGGAGGGAGGATGGGAGGAAGAGAGCTGAGTGTGCACCAAGGAGCGGTAAGATGCCAGACCTGTGAGTGAAGAAGCATCTTGGAAGTGGACCCTATAGCTCCAGGCACCTGCTGACACATAGTCGGAGgCAAACCACCCAGTCAAGTTCAACCCAAATTCCTGACCCAAAAAAT...___ATTACCTCTGGAAGTCCATTAGATGTTACAAGTCCAAGAGAATTCATAAAAG___GTATTAAAGTGCTGGTACCAATATCAAATGAGAGACTGACTGAGC	out-of-frame	CHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIr|*	.
TALL072	RCBTB2	LPAR6	-/-	-/-	13:48501742	13:48404263	splice-site	splice-site	deletion/read-through	upstream	downstream	31	40	27	706	98	high	.	.	duplicates(10),low_entropy(5),mismatches(11)	CACACGTCTGCGGCCAAGACGCAGGGTGGGCACGTGTACATGTGGGGCCAGTGCCGGGGTCAGTCCGTGATCCTCCCGCACCTCACCCACTTCTCCTGCACTGACGACGTGTTTGCCTGCTTTGCCACGCCCGCCGTCACGTGGCGCCTCCTCTCCGTGG___AACCTGATGACCACCTCACAGTGGCTGAGTCACTGAAGAGGGAATTTGACAACCCGGACACTGCAGACCTGAAGTTTCTAGTTGATGGAAAGTACATTTATGCACATAAAGTCCTTCTCAAGATTCG|GTCTGTTACAGAAGTCTCGGTTTACTTCAATTTCTGTTCTGCTTCTCTCTTTGGCACCATCAGGAAACCCTAGCCCCGTGTCT___GTGAAAACTCCAAAGCTTAACATTCTAACCACTCTAGGGAGGGAGGATGGGAGGAAGAGAGCTGAGTGTGCACCAAGGAGCGGTAAGATGCCAGACCTGTGAGTGAAGAAGCATCTTGGAA...___ATTACCTCTGGAAGTCCATTAGATGTTACAAGTCCAAGAGAATTCATAAAAG___GTATTAAAGTGCT	out-of-frame	HTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIr|svtevsvyfnfcsaslfgtirkp*	.
TALL072	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	10	72	0	109	122	medium	.	.	duplicates(15),low_entropy(6),mismatches(4)	CGCCCGCGCACTCCCGAGGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAGGTAAGTTTATTTATATTTAGG	.	.	.
TALL072	MTAP	CDKN2A	+/+	-/+	9:21818202	9:21994151	splice-site	CDS	deletion/read-through/5'-5'	downstream	upstream	1	4	0	20	10	medium	.	.	duplicates(1)	GCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCCGTGAGCCGCGGGATGTGAACCACGAAAACCCTCACTCGCGGCGGGCCGCACGCGCGCCGAATCCGGAGGGTCACCAAGAACCTGCGCACCATGTTCTCGCCGCCTCCAGGGCCGAGCTCGGCAGCCGCTGCGCCGCCCTaTG	out-of-frame	ANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|krllp*	.
TALL072	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	2	2	0	63	23	medium	.	.	mismatches(1)	GCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAA	.	.	.
TALL072	MTAP	CDKN2B-AS1	+/+	+/+	9:21818202	9:22029433	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	20	10	medium	.	.	duplicates(1),mismatches(1)	GCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACaACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTT	out-of-frame	ANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichniskdskreywcpccddssapli*	.
TALL072	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853412	18:48033621	exon	intron	deletion/read-through	downstream	upstream	0	0	9	116	0	low	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(30)	...GACAATCGAGTAGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGGGTATACTACGGtCA|...ACCAGGCATAC	.	.	.
TALL072	RCBTB2	RB1	-/-	+/-	13:48500818	13:48410430	intron	intron	deletion/read-through/5'-5'	upstream	downstream	3	1	3	7	11	low	.	.	low_entropy(1),mismappers(2),mismatches(1)	CTTTCTTTTACATGATGATTTTGAAATTCATTATGTTGTTGTGTAACAGATATTTAAATCCTACTGCAGTGAGTCACACACTCAACACAGCATTTTAGTCTCAAGTTCCTCTTTAGTAAGATCAAGCTGTGCAGCGTTTGCTCACTCTCTCTATATCACATCAACCTGCATGAAAGAAGGGGGGTGGATTTGTTTcgT|ca|TGTACTTACACAACTCTAGAAGGTATACACTATTACACACCTAGGCTTATATGGTACACCCTACTGCTTCTAGGCTACAAACCTATACAG	.	.	.
TALL072	CD1B	CD1C(1408),CD1B(32913)	-/-	./-	1:158329852	1:158295038	splice-site	intergenic	deletion/read-through	upstream	downstream	3	4	0	477	8	low	.	.	low_entropy(1)	CTGGAGGTGCCATAGTAAGCTTCCTGAGGGGAGCTCTAGGAGGATTGGATTTCCTGAGTGTCAAGAATGCTTCATGTGTGCCTTCaCCAGAAGGTGGCAGCAGGGCACAGAAATTCTGTGCACT...GGAAACTGTGAGAATTCTCCTCTATGAAACCTGCCCCCGATATCTCTTGGGCGTCCTCAATGCAGGAAAAGCAGATCTGCAAAGACAAG|GTCACAGGGTGACTAAGGGTGCAGGAGAGTCACCTAGGGCCTCCTGGTGCCAAGGAAATGAGCAATGGAAGCAGGACCCAAGCTGG___GAAAGATGCAACTGTCCTATTTCCTAATAGTTGGGTTAAGGTCATGGACTGAGTTCTGG	out-of-frame	ETVRILLYETCPRYLLGVLNAGKADLQRQ|ghrvtkgagespraswcqgneqwkqdpswercncpis*	.
TALL072	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	3	3	0	8	10	low	.	.	mismappers(1),mismatches(2)	GCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCC	out-of-frame	ALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtl	.
TALL072	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	3	2	0	30	10	low	.	.	mismappers(1)	TTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAgATCACTTGAAG___AAAGCTTATAGCTTCA	.	.	.
TALL072	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	2	2	0	131	59	low	.	.	duplicates(1)	TGTATTTGCAGCTTCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAG	out-of-frame	vfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilll	.
TALL072	SERPINB8	SERPINB8(12965),RPL12P39(53526)	+/+	./+	18:64004880	18:64018632	3'UTR	intergenic	deletion/read-through	downstream	upstream	1	1	1	4	2	low	.	.	.	GGATGAGGTACACACCCAGGTCCTGGAGCTGCCCTATGTGGAAGAGGAGCTGAGCATGGTCATTCTGCTTCCCGATGACAACACGGACCTCGCCGTG___GATACACTGAGAAGCACAAGCTTCTTCTGTGACATTCTTGCCAACATTATCAGCACCTGAGT|ATAAATTTTAACGACTCTTATGAGGCAG...ACTCAGAGAAACCATTGGAAACAAAGGGAATACAGGGAAAACATCTATGAATTACACTTCCTATTTTTCTGGTTTTATGAAAGCGTTCCAACGTTTATTAGACACACCTTGATATTGAAGTGCATATTTTCCTGGTTCTTGCTAAGATCATCAGAATACTTCAG	out-of-frame	DEVHTQVLELPYVEEELSMVILLPDDNTDLAVdtlrstsffcdilaniist*v|*	.
TALL072	EFEMP1	EFEMP1(10082),RN7SKP208(17433)	-/.	./.	2:55924116	2:55934221	5'UTR	intergenic	deletion/read-through	downstream	upstream	1	2	0	7	17	low	.	.	.	.	.	.	.
TALL072	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	2	1	0	14	5	low	.	.	mismatches(1)	CAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCA	.	.	.
TALL072	NTNG2	EEF1A1P5	+/.	+/.	9:132209268	9:133020213	intron	exon	deletion	downstream	upstream	0	0	3	1	89	low	.	.	mismatches(1)	.	.	.	.
TALL072	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	2	0	0	16	13	low	.	.	duplicates(2),mismappers(3)	TACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAA	.	.	.
TALL072	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	45	13	low	.	.	duplicates(1)	TGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACA	.	.	.
TALL072	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	4	5	low	.	.	.	CTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCC	.	.	.
TALL072	SH3D19	LRBA	-/-	-/-	4:151102943	4:150467024	exon	intron	deletion	upstream	downstream	0	0	2	10727	1	low	.	.	.	CTTCTTTCAAGTCATTTGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTCCGGATTTGGCGGACCTGTTGGTGCTGAGCATAAGAGGTCTTCCGTATCTGATTGTTGCGTTTTTTAGT...|...TAGTCTTAACC	.	.	.
TALL072	ZNF117	ZNF273	-/-	+/-	7:64981387	7:64893873	splice-site	exon	deletion/read-through/5'-5'	upstream	downstream	0	2	0	18	4	low	.	.	.	ATGAGATGGTAGCTAAACATTTAG|GAAATGATGCGGTGGTAACTTGCTGGGTAGTGACTAGGACGGTATTTACTGTCCTAGGGATGGTGGGATCCAGTGGACCAGAATCGTCAGCACCTCACCAT___GTCAGAGGAGACCGTAGAGGACCGC	out-of-frame	EMVAKHL|gndavvtcwvvtrtvftvlgmvgssgpessaphhvrgdrrgp	.
TALL072	RB1	RCBTB2(22785),LINC01077(14598)	+/+	./+	13:48381444	13:48556041	intron	intergenic	deletion/read-through	downstream	upstream	0	0	2	22	21	low	.	.	.	GGCCACATATAGCA___GAAGTACATCTCAGAATCTTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCTGAATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATC...TTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATCATGGAATCaCTTGCATGGCTCTCAG...|...GGGCTAACTTGCTGGAGAGCCACATGGAGAGACTGTATGGAAAAACCACAGGGAGAGGGAGAAGCCTTGAGATCACATGGAAGAGAACTGAGGAATTGAGCTGACAATGAGAATTGAGGTCCCA	.	.	.
TALL072	DDX5	LIMD2	-/-	-/-	17:64503331	17:63698221	CDS	3'UTR	deletion	upstream	downstream	0	0	2	56	834	low	.	.	.	GTGGAAATCTGTATTG...|...GCATGCCCCCCTCAGGGTCCCAAGCTCCCTCACTGCCACCGGAGACTGTGTGGCCCCCACGTCTCCCCATCTACCTCTACCCTTAACCTGTTTCTGAGCCACGGAGACAGGGAGGAAGGAGCGCGACAGTGCCACCTGTTGGGCATCATAAATGCCCCTGCAGCCCATGGGGGAGGAGATGGG	.	.	.
TALL073	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	4	35	0	64	59	high	.	.	duplicates(6),mismatches(5)	AATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAG	.	.	.
TALL073	MON1B	CTD-2300H10.2(65533),MON1B(20005)	+/+	./+	16:77191633	16:77170830	splice-site	intergenic	duplication	downstream	upstream	1	6	0	27	21	high	.	.	.	TGGAGGTCGGAGGAGACACTGCTGCCCCGGCCCCCGGGGGCGCGGAGGACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGAAGGTGGAGGGGTTCACGCGGTCCCGCCGGATCCCGAAGACGAGGGCCTGGAGGAAACAG|GGATGCTGAGCTGCTGCAGGAAGCTCTTGAACATCAAGTTATGCCAGCAGAAAAAGACATCAGATTGGAAGAATGTGGGTGATGTTTTGCCTGTGGAGGGGGTGGAGGATAGCCTTGGATCCCTTGAAGCCCCTAGGACATGGGTTTAGCCACCCCATGGCACTACAGAGGG...___GCAGATGAGCTGGTCTCAGAAATACTCAAGTCTCAAAATCTTTGGAACATAT	out-of-frame	EVGGDTAAPAPGGAEDLEDTQFPSEEAREGGGVHAVPPDPEDEGLEET|gmlsccrkllniklcqqkktsdwknvgdvlpvegvedslgsleaprtwv*	.
TALL073	PTEN	RP11-129G17.2(14068),RNLS(424)	+/+	./+	10:87865098	10:88273440	exon	intergenic	deletion	downstream	upstream	0	1	6	66	18	medium	.	.	duplicates(4),mismatches(6)	ATACAGTACACTGTTAGTGGATTAGCGAGCTCGGTAATCCGGTCTCCTAAATGAACAAAAAAGTAGACGCTTTTTGAGGTTGAGCATATTTCGATTAAATCTTGGCTTAGGCCCTAGATCAAGGGTTTAGATCAGAATAAAATGAAAATTAGTGTTGCACGTACGCATATTGCATCAGAATCTTGCAGTGATTGTTTTAGTTTCCTGAGTTGCATTGATAGATTCTTTTAAAATATGACTGATTTGCATAACTTTAGAAGCAGAATCATTTTCA|gta|TAtATggTGgGGaTTTTCTCTTAACATTATATCACAAAAAATATCCCAGATAGAAAAATTTGCTTTAAACCCACATTTTAAAATGACTGCATTAAATTCCACTGTTTTGATCTATTAGAATTTATTCAGCCATTTCCTGTTAGTGTTGATTTAGGTTATTTCCAGTTTTCCACTATCATAACTA	.	.	.
TALL073	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	2	1	8	11	medium	.	.	duplicates(1),mismatches(1)	TTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCG	.	.	.
TALL073	SBK1	GSE1	+/+	+/+	16:28319197	16:85654278	splice-site	splice-site	deletion	downstream	upstream	2	0	0	36	27	medium	.	.	.	CGGGAGGTGAGCATCACCAACAGCCTCTCCTCCAGCCCCTTCATCATCAAGGTCTTTGACGTGGTCTTTGAGACAGAGGACTGCTACGTCTTTGCCCAGGAGTACGCACCTGCTGGGGACCTGTTTGACATCATCCCTCCCCAG|GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGtAGGGG	in-frame	REVSITNSLSSSPFIIKVFDVVFETEDCYVFAQEYAPAGDLFDIIPPQ|DAGSRSSSGGRERLIVEPPLPQEKvG	.
TALL073	ZBTB7C	RP11-380M21.2	-/-	-/-	18:48027118	18:47853406	3'UTR	exon	deletion/read-through	upstream	downstream	0	0	15	0	197	low	.	.	duplicates(1),low_entropy(10),mismappers(8),mismatches(47)	CTTCAATTTTT...|...CGAGTAGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGGGTATACTACGGtCA	.	.	.
TALL073	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	0	5	0	10	10	low	.	.	mismatches(1)	CGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTATTCAGAGGGGCCGGTCTCTCTAAATATGCCCCAG___GATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGG	.	.	.
TALL073	STIL	TAL1	-/-	-/-	1:47314036	1:47224098	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	10	16	low	.	.	duplicates(1)	CGGCGGTGGCGCTCCTTGGAGCCGtCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|CGGGTTCTTTGGGGAGCCGGATGCCT...GAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATG___GTCCCCACACCAAAGTTGTGCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAGCAGAATGTGAACGGGGCCTTTGCCG	.	.	.
TALL073	EEF1A1P13	ANKH	-/-	-/-	5:14652855	5:14755548	exon	intron	deletion/read-through	downstream	upstream	0	0	4	353	0	low	.	.	.	...ACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAgATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGT|...AGGTACTAGG	.	.	.
TALL073	PUM1	LAPTM5	-/-	-/-	1:30960511	1:30738982	intron	CDS	deletion/read-through	upstream	downstream	0	0	3	3	765	low	.	.	mismatches(1)	CTAATGGTTTT...|...GGAAGTGCCCACCTATCTCAACTTCAAGTCCATGAACCACATG___AATTACCTCCCCAGCCAGGAGGATATGCCTCATAACCAGTTCATCAAGATGATGATCATCTTTTCCATCGCCTTCATCACTG	.	.	.
TALL073	MRVI1	MTRNR2L8(543),RNF141(1946)	-/-	./-	11:10573145	11:10509732	3'UTR	intergenic	deletion/read-through	upstream	downstream	0	0	2	3	1286	low	.	.	low_entropy(1),mismappers(3),mismatches(8)	CTAGCATTGA...|...ACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTCAGCCTATATACCGCCAtCTTCAGCAAACCCTGAtGAAGGCtaCAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCT	.	.	.
TALL073	POLA2	NEAT1	+/+	+/+	11:65268676	11:65425611	CDS	exon	deletion/read-through	downstream	upstream	0	0	2	0	286	low	.	.	.	CTTAGAATTG...|...ACCACTTAAGACGAGATTAGATGGGCTCTTCTGGATTTGTTCCTCATTTGTCACAGGTGTCTTGTGATTGAAAATCATGAGCGAAGTGAAATTGCATTGAATTTCAAGGGAATTTAGTATGTAAATCGTGCCTTAGAAACACATCTGTTGTCTTTTCTGTGTTTGGTCGATA	.	.	.
TALL073	RASSF5	MAPKAPK2	+/+	+/+	1:206587555	1:206730241	3'UTR	intron	deletion/read-through	downstream	upstream	0	0	2	82	2	low	.	.	.	CAGGTCTGAGCTAAGCCCCTGAAAGCAGGGTAATGCTCATAAAAGGACTGTTCCCGCGGCCCCAAGGTGCCTGTTGTTCACACTTAAGGGAAGTTTATAAAGCTACTGGCCCCAGATGCTC...|...GAGAAGTAGGG	.	.	.
TALL074	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	16	0	60	39	high	.	.	duplicates(3),low_entropy(1),mismatches(2)	GCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCC...CATCACCAGGAGTGACTCTGCCCATACgCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGT	.	.	.
TALL074	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	13	0	79	27	medium	.	.	duplicates(1),low_entropy(1),mismappers(1)	CGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___CCTGTGGACATTT...___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATA...ACAGAGGTCCAGATGCATTCtGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATAT	.	.	.
TALL074	ANKLE2	AP006621.5	-/-	+/+	12:132761618	11:783530	splice-site	splice-site	translocation	upstream	upstream	0	2	0	105	25	medium	.	.	.	CGCCAAGCGCGGCCGCCGCCCCCGCCTCAG|AAAGTTTCCTACACTACTGAGGTTTAGGGGCACTGTGAAGCAAAAGCCACGCCTCAGAATCCCAGGCGGAGACTCCGACCTCGTCCCGGGAGGGAAGCCAGTAGCTGAGCACCTGCGGGAGATTAAAGAGAGGAATAAGGAGGTGAGTAC	out-of-frame	PSAAAAPAS|esflhy*	.
TALL074	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	2	4	2	20	15	low	.	.	.	CTTTCGTTACTATGGTGCAGCCGGGGCTTGCAGAATCCCA___...GGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTG	.	.	.
TALL074	EEF1A1P6	DNAH11	-/-	+/-	7:22510698	7:21877545	exon	intron	deletion/5'-5'	upstream	downstream	0	0	6	407	1	low	.	.	low_entropy(1),mismappers(2),mismatches(9)	CTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAtACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGG...|...AAATGGTTCTTT	.	.	.
TALL074	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	0	96	253	low	.	.	.	CCGCCCCAGGAGGGTCCTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTG	out-of-frame	apggslfgGGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL074	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	24	253	low	.	.	read_through(5)	AAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTG...GAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCG	out-of-frame	RKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL074	EEF1A1P13	TRIO	-/-	+/-	5:14652303	5:14529020	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	4	121	0	low	.	.	low_entropy(2),mismappers(1),mismatches(9)	CTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTAcTGTTCCTGTTGGCCGAGTGGAGACTGGTgTTCTCAAACCCGGTATGGTtGTCACCTTTGCTCCAGTCAACGTTACA...TGAAGCTCTTCCTGGGGACAaTGTGGGCTTCaATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTG...|...ATAGAACAAAT	.	.	.
TALL074	EEF1A1P6	RAPGEF5	-/-	-/-	7:22511551	7:22264918	exon	intron	deletion/read-through	upstream	downstream	0	0	4	3844	0	low	.	.	low_entropy(1)	GCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGAT...GCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGT...|...CGTCATGAT	.	.	.
TALL074	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	1	2	0	7	15	low	.	.	duplicates(1)	CCGCAGTTCTCCAAGAAGACTTGGGATTGGTCGAGCGCGGAACCAGTGCGGGGCGCTGATTGGTtGGCACACCAATACGTAACGGCGACCGTGCGCGGCTCTCTAGCACCACCCCCGCTCCCTG...GGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATCCTCTTCCTCGGCTTCCGCCCCTTTCCGGCGGAGTGGAGATCCTA	.	.	.
TALL074	NBPF14(32506),RNU6-1171P(27122)	NBPF14	./-	-/-	1:148712257	1:148640089	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	7	53	low	.	.	.	TGGTTTTTCAGTTTATTACCTGTTTGGAGTTGGCTTGTTTCTGGACTCTCTCTTCTGCTCAGGTGAGCAGACTTCTAACTGGAACGCCTGGCTCTTGGACAAG|TGTCGAGATGGCTATGAACCCTGTGTAAATGAAGGAATGTGTGTTACCTACCACAATGGCACAGGATACTGCAA___ATGTCCAGAAGGCTTCTTGGGGGAATATTGTCAACATCGAGACCCCTGTGAGAAGAACCGCTGCCAGAATGGTGGGACTTGTGTGGCCCAGGCCATGCT	.	.	.
TALL074	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	3	0	0	15	13	low	.	.	mismappers(2),mismatches(1)	GAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAA	.	.	.
TALL074	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	47	13	low	.	.	mismatches(2)	GCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAA	.	.	.
TALL074	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	0	0	223	26	low	.	.	mismappers(1)	AAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGA?AATTGGTGTAAGACATCA?AATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTG...AGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGG	.	.	.
TALL074	HMGB1	UBL3	-/-	-/-	13:30459050	13:29819576	3'UTR	intron	deletion	upstream	downstream	0	0	3	550	0	low	.	.	.	TGAAGATGATTTTTTTTAGAAAGTGTATAGAAACTATTTTAATGCCAAGATAGTTACAGTGCTGTGGGGTTTAAAGACTTTGTTGACATCAAGAAAAGACTAAATCTAT...|...AGGTTCTATT	.	.	.
TALL074	RPSA	MYRIP	+/+	+/+	3:39411926	3:39818633	CDS	intron	deletion	downstream	upstream	0	0	3	12159	0	low	.	.	mismatches(3)	CTCGGGAAGTTCTGCGCATGCtTGGCACCATTTCCCGTGAAtACCCATGGGAGGTCATGCCTGATCTGTACTTCTACAGAtATCCTGAAGAG___ATTGAAAAAGAAGAGCAGGCTGCTGCTGAGA...|...GACTTTTGAT	.	.	.
TALL074	ZCCHC2	BCL2	+/+	-/+	18:62578168	18:63124934	3'UTR	3'UTR	deletion/5'-5'	downstream	upstream	0	0	2	6	14	low	.	.	mismappers(1),mismatches(2)	TGCTAGACAAGAGAAAAAACTTGAAGAAAAAAGAAGCTTAATTTCATGCTTCATAAGTAGCATTTATATTTATAGCACCAATGTACATTTTGAAACTTTCTTTCAGGGGTGGGAGTTAT...|...GTTGGAATTAATT	.	.	.
TALL074	SH3D19	LRBA	-/-	-/-	4:151102889	4:151005144	exon	intron	deletion/read-through	upstream	downstream	0	0	2	16992	2	low	.	.	mismappers(1),mismatches(4)	CTTCTTTCAAGTCATTTGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTCCGGATTTGGCGGACCTGTTGGTGCTGAGCATAAGAGGTCTTCCGTATCTGATTGTTGCGTTTTTTAGTAAAACCAACACAGAACAGACGAAGCAAGTAACCATCGGTAGTCTTGACATCAAC...|...CTTGGATTCTGAACTAAATTTTTGTGGGATTTTATTTGTGGGAATCCTGTGTAGATTAGTTTGTGTAAGTTTAACATCTTTCTTGACTATTTCTTGACTATTTCCCT	.	.	.
TALL074	DDX3X	CASK	+/+	-/+	X:41349910	X:41602649	3'UTR	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	2314	0	low	.	.	low_entropy(1),mismappers(2),mismatches(4)	GTTTTGATACACTTGTCTTAAGATATTAATGAAACACTTCAAAACACTGATGTGAAGTGTCCAGATTCTCAGATGTTTGTTGTGTGGATTTTGTTTAGTTGTGTGTTTTTTTTTT...|...CAATCCTCAT	.	.	.
TALL074	ESYT2	PTPRN2	-/-	-/-	7:158732013	7:158475438	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	2	215	0	low	.	.	mismappers(2)	CCGCTCCATGTGTATTTTGCTTAATGGAATGCTTTATTTAAGCACTTAGGCAGAGTAGACACAATcAAAGGTACAAAGCCCAGAGGAAGTGGTAGAGCAGCACCGTGCCTtCCCTGAGGCAGTGG...|...TCTCCAGCATCCT	.	.	.
TALL074	BRE	PPP1CB	+/.	+/.	2:28063473	2:28800252	intron	3'UTR	deletion	downstream	upstream	0	0	2	0	274	low	.	.	mismappers(1)	.	.	.	.
TALL074	ARHGAP21	KIAA1217	-/-	+/-	10:24584382	10:24205812	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	2	177	1	low	.	.	low_entropy(2),mismatches(2)	CGTGAGCAAAAATGCTAGTTCTGCAGCGAATGCCCAACCTCATAAACTGTCTGAAACCCCAGGCAGTAAAGCAGAGTTTCATCCCTGTCTTTAAACTGGGGGTATGTCCACTCTAGCAAGTAAA...|...TGTAAATTTTTCCT	.	.	.
TALL074	CHML	RGS7	-/-	-/-	1:241629264	1:241328253	3'UTR	intron	deletion/read-through	upstream	downstream	0	0	2	126	0	low	.	.	.	TGCTATTGTATTAGCAAAACTGTTTTAATTGCATGTGTCCTTATAGCAGCAGCATTGTGTATTAGTAGCCTTTTAAGAGAACTGTGTAGAAGACTATAAAAAGGGCTTTATAACTGATCTTTTG...|...GTGGCAAAGCCCT	.	.	.
TALL074	GTPBP1	PDGFB	+/+	-/+	22:38736192	22:39231277	CDS	intron	deletion/5'-5'	downstream	upstream	0	0	2	359	0	low	.	.	.	CACGGGCACAGAGGGAAGGAAGAAGGGAGCTGCTGGAGCCTGCTAACCGCCTCGAGCCACCTGCTGCTCAGGAGACCCTGCCCGTCCTTTTCATCTGCATGGGGCCACAGGCTCCTCTCTTGTGCTCCTAGAAGTCAGAGCGCCGAGC...|...GGATACGGCT	.	.	.
TALL074	CBL	STX17	+/+	+/+	11:119304507	9:99969758	3'UTR	3'UTR	translocation	downstream	upstream	0	2	0	27	35	low	.	.	.	GGGAAGTGCCTTTGGTTCTTGGGTGGAGCTGGAACTGCAGAGCTTTGCACCTAGTCCTTT|TCCCCAGACTTTTTATCTCCTATGCATCCCTTTGCTTTCTATAGCTGGTGTTTCTTCCCCAAAATGGCGTTCCCATGCTTACCTTTCTCACATTCTAGACAATGATGGACAAAGACGCATGCAAGACTCAGACCCGGGGAATGGTGTGGTGCTAATCTCAAC	.	.	.
TALL074	CCDC15	SLC37A2	+/+	+/+	11:125038604	11:125076757	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	19	6	low	.	.	.	AAAA___AATTAAGAAAAAGAGAGAGCAAGAATGTTATGCTGCAGAGCAGAGGATCCTAAGAATGAACTTTCATGAAGATCCATATTCAGGAGAGAAGTTGAGTGAGATATTAGCCCAGTTACAACTTCAAGAAATAAAAGGAACCAGAGAAAAACAACAGAGAGAAAAAGAATACCTGAG|GTTCCGAGGCCTCATCCTGCTGCTGACCTTCCTAATTTACGCCTGCTATCACATGTCCAGGAAGCCTATCAGTATCGTCAAG___AGCCGTCTGCACCAGAA	in-frame	KIKKKREQECYAAEQRILRMNFHEDPYSGEKLSEILAQLQLQEIKGTREKQQREKEYLr|FRGLILLLTFLIYACYHMSRKPISIVKSRLHQ	.
TALL074	DYNC1H1	RCOR1	+/+	+/+	14:102046642	14:102714530	intron	CDS	deletion	downstream	upstream	0	0	2	11	36	low	.	.	.	AGTTAAGAGG...|...AGATGTGGAGGCTGTTTCTGCCAATGCCACTGCTGCTACCACGGTGCTGAGACAACTAGACATGGAATTGGTTTCAGTCAAACGACAG___ATCCAGAATATTAAACAGACAAACAGTGCTCTCAAAG	.	.	.
TALL074	PITPNA	ZNF333	-/.	+/.	17:1531659	19:14719003	intron	CDS	translocation	upstream	upstream	0	0	2	3	36	low	.	.	.	.	.	.	.
TALL074	ACOT12	CKMT2-AS1	-/-	-/-	5:81330814	5:81239355	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	2	14	low	.	.	.	AAAGACTTGGTAGTACTCGTATCACGAAGAAAACCCCTCAAAGATGG___TAACACTTACACAGTGGCAGTGAAGTCGGTCATTTTGCCATCGGTCCCCCCGTCTCCACAGTACATCAGAAGTGAAATCATATGTGCCGGATTTCTCATCCATGCTATTGACAGCAATTCATGCATC|ATTCCTAAGATGAGGACACAGCATCCTGGGCCACTGTCACTAATACAAATTTGCCTCTGGAGGGACTCTACGG	out-of-frame	KDLVVLVSRRKPLKDGNTYTVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCI|ipkmrtqhpgplsliqiclwrdst	.
TALL075	RCBTB2	LPAR6	-/-	-/-	13:48501742	13:48389812	splice-site	splice-site	deletion/read-through	upstream	downstream	32	22	2	107	99	high	.	.	duplicates(6),low_entropy(2),mismappers(2),mismatches(6)	CGTGATCCTCCCGCACCTCACCCACTTCTCCTGCACTGACGACGTGTTTGCCTGCTTTGCCACGCCCGCCGTCACGTGGCGCCTCCTCTCCGTGG___AACCTGATGACCACCTCACAGTGGCTGAGTCACTGAAGAGGGAATTTGACAACCCGGACACTGCAGACCTGAAGTTTCTAGTTGATGGAAAGTACATTTATGCACATAAAGTCCTTCTCAAGATTCG|GTGAAAACTCCAAAGCTTAACATTCTAACCACTCTAGGGAGGGAGGATGGGAGGAAGAGAGCTGAGTGTGCACCAAGGAGCGGTAAGATGCCAGACCTGTGAGTGAAGAAGCATCTTGGAAGTGGACCCTATAGCTCCAGGCACCTGCTGACACATAGTCGGAGACAAACCACCCAGTCAAGTTCAACCCAAATTCCTGACCCAAAAAATCATAAGCAAAATAAAATATTTGTTTAAAGCCACTAATTTGTTATCCAGCAATAGAG	out-of-frame	VILPHLTHFSCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIr|*	.
TALL075	RCBTB2	LPAR6	-/-	-/-	13:48501742	13:48404263	splice-site	splice-site	deletion/read-through	upstream	downstream	4	4	3	107	11	medium	.	.	low_entropy(2)	CCGCACCTCACCCACTTCTCCTGCACTGACGACGTGTTTGCCTGCTTTGCCACGCCCGCCGTCACGTGGCGCCTCCTCTCCGTGG___AACCTGATGACCACCTCACAGTGGCTGAGTCACTGAAGAGGGAATTTGACAACCCGGACACTGCAGACCTGAAGTTTCTAGTTGATGGAAAGTACATTTATGCACATAAAGTCCTTCTCAAGATTCG|GTCTGTTACAGAAGTCTCGGTTTACTTCAATTTCTGTTCTGCTTCTCTCTTTGGCACCATCAGGAAACCCTAGCCCCGTGTCT___TTTGCTGAGAATGATGGTTTCCAGCTTCATCCATGTCCCTGCAAAGGACACGAACTCATCCTTTTTTATGGCTGCATAGTGTTCCATGGTGTATATGTGCCACATTTTCTTTATCCAGTCTACC...___GTGAAAAC...AACCACTCTAGGGAGGGAGGATGGGAGGAAGAGAGCTGAGTGTGCACCAAGGAGCGGTAAGATGCCAGACCTGTGAGTGAAGAAGCATCTTGGAAGTGGACCCTATAGCTCCAGGCACCTGCTGACACATAGTCGGAGACAAA	out-of-frame	PHLTHFSCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIr|svtevsvyfnfcsaslfgtirkp*	.
TALL075	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	12	13	3	58	79	high	.	.	duplicates(1),low_entropy(2),mismatches(4)	CTTAAACCAAATTAGCCGGGGCTTTCGTTACTATGGTGCAGCCGGGGCTTGCAGAATCCCA___...ACACGCGGCGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...TTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCC	.	.	.
TALL075	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	7	7	1	52	79	high	.	.	mismatches(2)	GCCGCCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCG	.	.	.
TALL075	STIP1	GPR137	+/+	+/+	11:64186270	11:64286510	splice-site	splice-site	deletion/read-through	downstream	upstream	2	29	0	571	161	medium	.	.	mismatches(4)	GCATGGCGC...CCAGAAGGCGGCGCGTGCGGTTGGGAACGCGGAGCGGACGGATTCGATTCAACGGGGTTCCGGACCGCGCTGCGCTATGGAGCAG|GCCTCCCTCCCTGACATGGAGAGTAACCTGTCTGGCCTGGTGCCTGCTGCCGGGCTGGTGCCTGCGCTGCCACCTGCTGTGACCCTGGGGCTGACAGCTGCCTACACCACCCTGTATGCCCTGCTCTTCTTCTCCGTCTATGCCCAGCTCTGGCTGGTGCTTCTGTATGGGCACAAGCGTCTCAGCTATCAGACGGTGTTCCTGGC...CCCTTGCCCTTCTGGCTTCTCTACTGCTGCCCCGTCTGCCTGCAGTTaTTCACCTTGACGCTTATGAACCTaTACTTTGCCCAG___GTGGTGTTCAAGGCCAAGGTGAAGCGTCGGCCGGAGATGAG	in-frame	MEQ|ASLPDMESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFL	.
TALL075	STIP1	GPR137	+/+	+/+	11:64186270	11:64288340	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	571	220	low	.	.	.	ACGcATTCGATTCAACGGGGTTCCGGACCGCGCTGCGCTATGGAGCAG|GCGGACCTGGTGAATGACCTGGGGAACAAAGGCTACCTGGTATTTGGCCTCATCCTCTTCGTGTGGGAGCTACTGCCCACCACCCTGCTGGTGGGCTTCTTCCGGGTGCA	in-frame	MEQ|ADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRV	.
TALL075	GLB1L3	THYN1	+/-	-/-	11:134275185	11:134251308	5'UTR	splice-site	deletion/read-through/3'-3'	upstream	downstream	19	8	0	319	693	medium	.	.	duplicates(1),mismatches(2)	AATGTAGTTCTCTGAAAATACTGTGTGTGGGGGAGGGAGTTTATCTTGTCTCATTCCTTACAAGGATACTTTGCTCTCCGACACCTTAGCTCCCTGAAAGTTTCCTAGATCGTCCATCTTTTC...TTTTACAGCCACACACTTTATTCTTCTTTGTCAAGTTTAAAGTATTCTAGGGCTTGTGCCTTCCCACATAAAATTTAGAATAAACTTGTCTGTTTCTACAAAAAGCCATGTTGGTATTTCGAGAGGAATTGCAATCAACCTATGGATCAAATTGAGAATTGTATCCTTATTATGTTGAATCTTCCAACCCACGAACATG|ACAAGGGACTATCAGGAAAACGCACCAAAACTGAGAACTCAGGTGAGGCATTAGCTAAAGTGGAGGACTCCAACCCTCAGAAGACTTCAGCCACTAAAAACTGTTTGAAGAATCTAAGCAGCCACTGGCTGATGAAGTCAGAGCCAGAGAGCCGCCTAGAGAAAGGTGTAGATGTGAAG___TTCAGCATTGAGGATCTCAAAGCACAGCCCAAAtAGAC	.	.	.
TALL075	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	5	10	0	20	51	medium	.	.	low_entropy(1),mismappers(1),mismatches(4)	CGCGCACTCCCGAGGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAG	.	.	.
TALL075	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	6	9	0	413	560	medium	.	.	mismatches(2)	GAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL075	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	15	560	low	.	.	read_through(13)	CGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATAC...GTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL075	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	8	5	0	423	62	medium	.	.	low_entropy(4),mismatches(2)	GAGCAACCCTGTAAAACCAGCCTTAGACTATTTTTCAAACA___...CACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGAT	.	.	.
TALL075	ITM2C	PTMA	+/+	+/+	2:230865145	2:231711348	splice-site	splice-site	deletion	downstream	upstream	9	3	0	591	42586	medium	.	.	low_entropy(4),mismatches(14)	AGCGGCGGAGGCAGAGACCGAGGCTGCACCGGCAGAGGCTGCGGGGCGGACGCGCGGGCCGGCGCAGCCATGGTGAAGATTAGCTTCCAGCCCGCCGTGGCTGGCATCAAGGGCGACAAGGCTGACAAGGCGTCGGCGTCGGCCCCTGCGCCGGCCTCGGCCACCGAGATCCTGCTGACGCCGGCTAGG|GACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCT___AATGAGGAAAATGGGGAGCAGGA...___GTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAG___GATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGaAAAAAA...CGTGGTCACCTTCGAGTAGAGAGGCCCGCCCGCCCACCGTGGGCAGTGCCACCCGCAGATGACACGCGCTCTCCACCACCCAACCCAAACCATGAGAATTTGCAACAGGGGAG	in-frame	MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR|DLKEKKEVVEEAENGRDAPANGNANEENGEQ	.
TALL075	STIP1	KCNK4	+/+	+/+	11:64186270	11:64296878	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	0	571	11	medium	.	.	duplicates(1),mismatches(1)	GTCCCGGTAGCTTCTAGTAGGTTCCAGAAGGCGGCGCGTGCtGTTGGGAACGCGGAGCGGACGGATTCGATTCAACGGGGTTCCGGACCGCGCTGCGCTATGGAGCAG|GAGGTGGCTGATGCCCTGGGAGGGGGTGCGGACCCAGAAACCAACTCGACCAGCAACAGCAGCCACTCAGCCTGGGACCTGGGCAGCGCCTTCTTTTTCTCAGGGACCATCATCACCACCATCG___GCTATGGCAATGTGGCCCTGCGCACAGATGCCG	in-frame	MEQ|EVADALGGGADPETNSTSNSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDA	.
TALL075	TLX1NB	TRDC	-/-	+/+	10:101130408	14:22462932	intron	splice-site	translocation	upstream	upstream	0	1	4	4	3688	medium	.	.	.	AATGAATTCAACCAGATTGCATTCCACCTAACAATTACCCCAGGGTTGGCTAcTCCAGACAAGAAGCCTTTGGACTGTG|GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAACACGACAATAAAACTGTGCACTCCACTGACTTTGAAGTGAAGACAGATTCTACAG___ATCAC	.	.	.
TALL075	TLX1NB	TRDC	-/-	+/+	10:101130757	14:22462932	splice-site	splice-site	translocation	upstream	upstream	0	1	4	79	3688	medium	.	.	.	AGGAGTCCAGCCCACAAGGCGTCTGAGGAAGGGATGTCTCTGCCCAACTGGAGAATCTCCTCAAGGGCTCAGCTGCGAAACACCTGTCACTCAACCAGGAGATTTACTCCAAATTTCAAGTCCAGCTTTTTAGAAAGTAGAAGACTGTCTACTCCCCAGGTATGGAGCCaAGGCCCTGAGGCAGGACG|GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATCCAAGAAGATAACAGAGTTTGATCCTGCTATTGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATGTTCAGTTCAACACGACAATAAAACTGTGCACTCCACTGACTTTGAAGTGAAGACAGATTCTACAG___ATCAC	.	.	.
TALL075	LINC01420	HMGB3	+/+	+/+	X:56732199	X:150985595	splice-site	splice-site	deletion	downstream	upstream	2	1	0	1215	848	medium	.	.	.	ATTATCCGGAAGGAACTCCCAACGGAGGTAGTACCACTCTACCCTCCGCACCTCCTCCTGCATCAGCCGGCCTGAAGTCGCACCCTCCTCCTCCGGAGAAGTAGAGAAATAAATTTCTCCCACC...TATGACTCCATTTCCCTGGTGCATTCATATAATAGTTCACCTGGTGAAAACAATGAAGATTATTTACAATGCTACCCTGCTTTTTCTGGTGTCCTGAACCTGGAAGTTGTGCTTTTTAAG|TCAGGATGGCTAAAGGTGACCCCAAGAAACCAAAGGGCAAGATGTCCGCTTATGCCTTCTTTGTGCAGACATGCAGAGAAGAACATAAGAAGAAAAACCCAGAGGTCCCTGTCAATTTTGCGGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAG___ACGATGTCCGGG	.	.	.
TALL075	STIP1	RP11-783K16.10	+/+	+/+	11:64186270	11:64296878	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	571	11	medium	.	.	duplicates(1),mismatches(1)	GAACGCGGAGCGGACGGATTCGATTCAACGGGGTTCCGGACCGCGCTGCGCTATGGAGCAG|GAGGTGGCTGATGCCCTGGGAGGGGGTGCGGACCCAGAAACCAACTCGACCAGCAACAGCAGCCACTCAGCCTGGGACCTGGGCAGCGCCTTCTTTTTCTCAGGGACCATCATCA	in-frame	MEQ|EVADALGGGADPETNSTSNSSHSAWDLGSAFFFSGTII	.
TALL075	STIP1	RP11-783K16.10	+/+	+/+	11:64186270	11:64300657	splice-site	splice-site	deletion/read-through	downstream	upstream	0	4	0	571	21	low	.	.	mismatches(1)	GTTGGGAACGCGGAGCGGACGGATTCGATTCAACGGGGTTCCGGACCGCGCTGCGCTATGGAGCAG|GTGTCGCTCAAGTCTTCCGACCGCCAAGGCTCGGACGAGGAGAGCGTGCATAGCGACACTCGGGACCTGTGGACCACGACCACGCTGTCCCAGGCACAGCTGAACATGCCGCTGTCCGAGGTCTGCGAGGGCTTCGACGAG	in-frame	MEQ|vslkssdrqgsdeesvhsdtrdlwttttlsqaqlnMPLSEVCEGFD	.
TALL075	TMSB10	AC022210.2(17458),KCMF1(36975)	+/+	./+	2:84906668	2:84934118	3'UTR	intergenic	deletion/read-through	downstream	upstream	24	0	0	2178	14	low	.	.	duplicates(33),low_entropy(125),mismatches(34)	AGGATCTCGGGCTCGGAACGAGACTGCACG___GATTGTTTTAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCAGCTTCGATAAGGCCAAGCTGAAGAAAACGGAGACGCAGGAGAAGAACACCCTGCCGACCAAAGAGA___CCATTGAGCAGGAGAAGCGGAGTGAAATTTCCTAAGATCCTGGAGGATTTCCTACCCCCGTCCTCTTCGAGACCCCAGTCGTGATGTGGAGGAAGAGCCACCTGCAAGATGGACACGAGCCACAAGCTGCACTGTGAACCTGGGCACTCCGCGCCGATGCCACCGGCCTGTGGGTCTCTGAAGGGACCCCCCCCCAATCGGACTGCCAAATTCTCCGGTTTGCCCCGGGATATTATAGAAAATTATTTGTATGAATAATGAAAATAAAACACACCTCGTG|GCAAAAAAAAAAAAAAA...AAAAAAAAAAAAAAAAACCC	out-of-frame	MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS*dpggfptpvlfetpvvmwrkshlqdghepqaal*twalradatglwvsegtppqsdcqilrfapgyyrklfv*imkikhtsw|qkkkk	.
TALL075	TLX1NB	TRDJ4	-/-	+/+	10:101127450	14:22455248	intron	5'UTR	translocation	upstream	upstream	0	0	11	18	185	low	.	.	.	GGAGAATCTCCTCAAGGGCTCAGCTGCGAAACACCTGTCACTCAACCAGGAGATTTACTCCAAATTTCAAGTCCAGCTTTTTAGAAAGTAGAAGACTGTCTACTCCCCAG___GGTATTTACTGAGGGCC...|...GCCAGACCCCTGATCTTTGGCAAAGGAACCTATCTGGAGGTACAACAAC___GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGGAATTCTACCCCAAGGATATAAGAATAAATCTCGTGTCATC	.	.	.
TALL075	RB1	LINC00462(69607),CYSLTR2(6016)	+/+	./+	13:48381443	13:48647695	splice-site	intergenic	deletion/read-through	downstream	upstream	4	3	0	79	14	low	.	.	mismatches(3)	AGAACGATTATCCATTCAAAATTTTAG___CAAACTTCTGAATGACAACATTTTTCATATGTCTTTATTGGCGTGCGCTCTTGAGGTTGTAATGGCCACATATAGCA___GAAGTACATCTCAGAATCTTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCTGAATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCATGGCTCTCA|AGCCTTGTATACACTCAATATGCAAGAAGCCCTGGAAGTTCCCAAGGTGTGTTTCCAAGACCCTACACCAGCCTGGCTGAAACAGGACCAGATCATCTCTCAAATCTCCATCTCATGGTCTTGGTGGCCACCTGCTGCCTGAAGCTAGGGCTACAGAGGCGGGAGTGAAGAAGGACTCACCTGCCCAGACTGAAGCCACAGAATCCAGGGAGCCAGCCTCAAG	out-of-frame	ERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLS|slvytqyarspgssqgvfprpytslaetgpdhlsnlhlmvlvatcclklglqrre*	.
TALL075	RP11-403P17.6	CMTM2	-/.	+/.	16:66565982	16:66579720	exon	CDS	deletion/read-through/3'-3'	downstream	upstream	4	3	0	1106	132	low	.	.	mismatches(2)	.	.	.	.
TALL075	EEF1A1P6	FAM126A	-/-	-/-	7:22511651	7:22890668	exon	intron	deletion/read-through	downstream	upstream	0	0	6	10246	0	low	.	.	low_entropy(1),mismatches(7)	...GCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCAC|...GCTCAGGTTCCT	.	.	.
TALL075	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	3	1	1	77	4	low	.	.	mismatches(2)	ACTGACGCCTGTCGCTTATG___GCTGCCGTGTGGAATCCATCTACCTGAACGTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTaGC	out-of-frame	LTPVAYGCRVESIYLNVESVCTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|elksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
TALL075	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	0	200	369	low	.	.	mismatches(2)	GCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCC...GCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAA	.	.	.
TALL075	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606353	intergenic	intron	deletion/read-through	downstream	upstream	2	2	0	10	14	low	.	.	.	.	.	.	.
TALL075	SSBP2	DHFR	-/-	-/-	5:81420306	5:80651677	3'UTR	intron	deletion	upstream	downstream	0	0	4	2079	4	low	.	.	low_entropy(1),mismatches(5)	TGTACGGAGTG...|...ATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACcTCAACAGTTAAATcAACAAAACTGCTCGCCAGAACACTACGgGCCACAGCTTAAAAC...GGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGAtGAAGGCTaCAA	.	.	.
TALL075	MAN2B2	MRFAP1	+/+	+/+	4:6578498	4:6641730	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	0	42	1252	low	.	.	mismatches(1)	GTGGGATGGCGTCGCCTCGGACCAGCAGAAATACCAG___GTCCGCCAGCTCCTGGAGGAAGGACGCCTGGAATTTGTCATCGGAGGCCAGGTCATGCATGACGAGGCTGTGACGCACCTTGATGACCAGATCCTGCAGCTCACAG|GTTTCCAGCCAATGGATTCTGGTCAACTGGTGGAGATTGGCTGACACCCTGGAGAAGCCGAAACCAGAGAGCCTTTTGTTTTCTCTTTTTT[t]CCTGTCTATGCTCTGTCTCACTTAACACTACGTTTTCTGCTATGGTCTGTGGTTGATGACCTCAATATGAGTTTCGATTGTTA	out-of-frame	WDGVASDQQKYQVRQLLEEGRLEFVIGGQVMHDEAVTHLDDQILQLT|gfqpmdsgqlveig*	.
TALL075	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	4	5	low	.	.	.	CCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATG...CAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCA	out-of-frame	LNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrh	.
TALL075	SH3D19	LRBA	-/-	-/-	4:151102946	4:150882326	exon	intron	deletion/read-through	upstream	downstream	0	0	3	52877	1	low	.	.	mismatches(4)	TTTGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTCCGGATTTGGCGGACCTGTTGGTGCTGAGCATAAGAGGTCTTCCGTATCTGATTGTTGCGTTTTTT...|...CCATTTAACT	.	.	.
TALL075	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511705	7:23400668	exon	intron	deletion	downstream	upstream	0	0	3	154	0	low	.	.	mismappers(2),mismatches(5)	.	.	.	.
TALL075	RANBP17	NPM1	+/+	+/+	5:171254956	5:171391321	intron	CDS	deletion/read-through	downstream	upstream	0	0	3	0	5859	low	.	.	low_entropy(5),mismappers(4),mismatches(6)	ATGACTTCACC...|...GTGCAAAGGATGAGTTGCACATTGTTGAAGCAGAGGCAATGAATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACG___GTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAAGTGTGGTTCAGGGCCAGTGCATATTAGTGGACAGCACTTAGTAG	.	.	.
TALL075	SLC25A5-AS1	SLC25A43	-/-	+/-	X:119467666	X:119444093	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	2	1	5	2	low	.	.	.	AGAACACCCGGGACTTGAACGCTGGACCCTGAGAGAGGCCTCGGAGAGGGGAGGAAGGGTGAGGTCACGATGTGCCTGGACAAAAACCCTTGGAGCAGGACCAGGACTAGG___ACCGTGTGCTGTC...AAACCAGACGAAATTAAGGGAACAGCAGACGAAGGAACTGCCACCGTGCCCCAGACCCTG|CTCAAAGAATCAATATTCTATGCTTTAAAAATATAGAATGGCTGGGTGCAGTGGCTCATGCCTGTAATTCCAGCACTTTGGGAGGCTGAGGCTGGCAGATCGCTTGATCCCAGGAGTCCAAGACCAGCCTGGGCAACATGACGAAACCTCATCTCTACAAAAGAAAAAAAgATTgGCCGG	.	.	.
TALL075	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	0	3	0	314	7	low	.	.	.	AGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAA	out-of-frame	LNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL075	NECAP1	NECAP1(23137),CLEC4A(2724)	+/+	./+	12:8090299	12:8120908	splice-site	intergenic	deletion/read-through	downstream	upstream	3	0	0	80	3	low	.	.	.	ACTCGAGGATAAAGTTTCAG___GGGAGCTCTTTGCTCAGGCACCAGTAGAACAATATCCTGGTATTGCTGTGGAGACGGTGACAGATTCTAGCCGCTACTTTGTAATCCGGATCCAGGATGGTACTG|GTTTGTTCAGGTAACTTGCATTGGCCAACAGAATCAGAGCAAATACAACGTACACCTTATCTGAATAAAG	out-of-frame	LEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGT|glfr*	.
TALL075	BACH2	UBE2J1	-/-	-/-	6:90023248	6:89338243	intron	CDS	deletion	upstream	downstream	0	0	3	0	1116	low	.	.	.	AGCATCGGG...|...AGATTACACTCCTGAGGAAAGAAGAGCACTTGCCAAAAA___ATCACAAGATTTCTGTTGTGAAGGATGTGGCTCTGCCATGAAGGATGTCCTGTTGCCTTTAAAATCTGGAAGCGATTCAAGCCAAG	.	.	.
TALL075	AP000783.1	GRAMD1B	+/+	+/+	11:123480893	11:123577367	intron	splice-site	deletion/read-through	downstream	upstream	3	0	0	11	13	low	.	.	.	CCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG...CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCAcGG	.	.	.
TALL075	HECW2	STK17B	-/-	-/-	2:196330922	2:196171422	intron	5'UTR	deletion/read-through	upstream	downstream	0	0	3	0	818	low	.	.	mismatches(3)	ATCAGACCTG...|...AGAACTaGTCCTGTGGCGGCCCCCGGCGTGGGGCGGGACAGCGGCaaCCTGGAGGGGGaAGTCCCGGGAGAACCTGCGGCGGCCGGAGCG___GTAAAAATAAGTGACTAAA	.	.	.
TALL075	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	72	153	low	.	.	mismatches(1)	TGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCT...TTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTT	out-of-frame	ATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL075	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	68	153	low	.	.	.	GTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGC	out-of-frame	VLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL075	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	2	0	13	9	low	.	.	low_entropy(1),mismatches(1)	TTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAAgCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTgCAACAACCTAGTGTCAtTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCA...CGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGaTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGC	out-of-frame	FKLEQGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL075	NCOA2	SLCO5A1	-/-	-/-	8:70127002	8:69690213	CDS	intron	deletion	upstream	downstream	0	0	2	9	7372	low	.	.	mismatches(3)	AGGGAAATCC...|...ATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCAcGGTGAAGAGACATGAGAGGTGTAGAATAAGTGGGAG	.	.	.
TALL075	RASGRP1	RP11-624L4.1	-/.	-/.	15:38560510	15:39090852	intron	intron	deletion	downstream	upstream	0	0	2	8	0	low	.	.	low_entropy(1),mismappers(1),mismatches(4)	.	.	.	.
TALL075	OSBPL8	NAP1L1	-/-	-/-	12:76491559	12:76060240	intron	CDS	deletion	upstream	downstream	0	0	2	1	4968	low	.	.	mismappers(1),mismatches(3)	ATGTTTCTAAAT...|...AAACCTGCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCAtGATCTTGAAAGGAAGTATGCTGTTCTCTATCAGCCTCTATTTGATAAG___CGATTTGAAATTATTAATGCAA	.	.	.
TALL075	CEP128	TSHR	-/.	+/.	14:80939540	14:80976280	5'UTR	intron	deletion/read-through/3'-3'	downstream	upstream	0	1	1	78	2	low	.	.	low_entropy(2),mismappers(1)	.	.	.	.
TALL075	LRRC7	SRSF11	+/+	+/+	1:70126797	1:70250790	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	0	1137	low	.	.	low_entropy(2),mismappers(1),mismatches(2)	ACTAAGGTAG...|...GGATATGAGTGACTGAATATTGCCTCTGAGGGAGTCCAACTGTATACCTGCATCAGTGTCATTCCTTTGTGTGATTTCTTAATGCTGTATTTGTTCATCTCAAACCTAGATGTATACAGCTCTG	.	.	.
TALL075	USP20	ABL1	+/+	+/+	9:129881238	9:130812907	3'UTR	intron	deletion	downstream	upstream	0	0	2	1045	0	low	.	.	mismappers(1)	CTGTAATTTGCCTCGAAGTTCAGCAGTTCATCTTCATGGGAAATTTGCTGAGCCCCCACCAGGGAACCGGATGATGAAACAGGGATACCTCACAGCTTGGCCATTTG...|...CTGGGCCATTTT	.	.	.
TALL075	PARL	MAP6D1	-/-	-/-	3:183840570	3:183818111	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	386	32	low	.	.	mismappers(1)	CTTGTATTCTGTTTATGGAGAGTACCTTCTCTGCAGCGGACAATGATCAGATATTTCACATCGAATCCAGCCTCAA___GTGTTATTTCCAATTTTGTCAGTTACGTGGGTAAAGTTGCCACAGGAAGATATGGACCATCACTTGGTGCA|ACAGGAATTCCAGGCTTGGACTGGAGTGAAGCCCTCAAGATCCACAAAGACAAAACCAGCCCGAGTCATCAtAACCCACACTTCGGGATGGGACAGCAGCCCTGGGGCCGGCTTCCAG___GTCCCAGAGGTGAGGAAGAAGTTCACTCCTAACCCCTCCGCCATCTTTCAGGCCTCAGCTCCCCGGATTCTCAACGTGTGACTGCC	out-of-frame	LVFCLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGA|tgipgldwsealkihkdktspshhnphfgmgqqpwgrlpgprgeeevhs*	.
TALL075	PARL	MAP6D1	-/-	-/-	3:183833492	3:183818111	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	461	32	low	.	.	read_through(7)	CAGGAATGATCCTGGGATGGAAATTTTTTGATCATGCGGCACATCTTGGGGGAGCTCTTTTTGGAAT|ACAGGAATTCCAGGCTTGGACTGGAGTGAAGCCCTCAAGATCCACAAAGACAAAACCAGCCCGAGTCATCACAACCCACACTTCGGGATGGGACAGCAGCCCTGGGGCCGGCTTCCAG___GCCTCAGCTCCCCGGATTCTCAACGTGTGACTGCCTGCACCGTGACACCATGGCTGCCGACAGGACAGGGCTGGGGAGCaGCCTCAGGACCCACTGCCGCGGG	in-frame	GMILGWKFFDHAAHLGGALFGi|QEFQAWTGVKPSRSTKTKPARVITTHTSGWDSSPGAGFQASAPRILNV*	.
TALL075	RP4-659I19.1(1564),NTPCR(31023)	NTPCR	./+	+/+	1:232919582	1:232955557	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	18	261	low	.	.	.	CCATGTAATGGGTGGCTCCCCTTCACGTTGCTCTATGAGAAGCAGCTCCCTGAGGCCCTCATTAGAGGCA?ATGCTGACATCaTGCTTCTTGTACAGACTGCAGAACG|GAGTTGGAAAAACAACATTGATCCATAAAGCCAGTGAGGTTTTAAAATCCTCTGGTGTGCCTGTTGATGGATTTTATACCGA	.	.	.
TALL075	NLK	TRAF4	+/.	+/.	17:28135582	17:28749929	intron	CDS	deletion	downstream	upstream	0	0	2	1	63	low	.	.	.	.	.	.	.
TALL075	MAD1L1	INTS1	-/-	-/-	7:2022811	7:1486656	intron	CDS	deletion	upstream	downstream	0	0	2	0	273	low	.	.	mismappers(1),mismatches(1)	AGTGGGTTCCT...|...CCCAGGTGGCCTaCCGCGTGCTGGCCATGAAG___GGTTTGTCGCTGGTGCTTTCGGAGGGCAGCCTGCGGGACGGGGAGGAGAAGGAGCCCCCCATGGAGGAGGATGTGGGGGACACAGATGTGCT	.	.	.
TALL075	DENND3	SLC45A4	+/+	-/+	8:141189146	8:141237594	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	0	1	24	1	low	.	.	.	CGGAAGACTCCGTCATCTACATCATCAACGTCCACAGCATGTCCTGCAACAAGCAGCTCACAGCCCACTGCTCCAGTGTCACGGATTTGATTGTGCAGGACaGACAGGAGGCACCCAG|ACCTGGAGGGCCTCCAGGGCAAAAATCACAACCCTCACCCCAAAGCCACAtGGTGTCCCTCACCGCCGCCCTCCA	out-of-frame	EDSVIYIINVHSMSCNKQLTAHCSSVTDLIVQDrQEAPr|pggppgqksqpspqshmvsltaal	.
TALL075	GFI1	EVI5	-/.	-/.	1:92480078	1:92726350	intron	intron	deletion/read-through	downstream	upstream	0	0	2	41	0	low	.	.	mismappers(1)	.	.	.	.
TALL075	ABHD5	ADK	+/+	+/+	3:43691039	10:74589282	splice-site	splice-site	translocation	downstream	upstream	0	2	0	29	286	low	.	.	.	AGGAGGAGGAGGTGGACTCTGCCGACACCGGAGAGAG|GAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAG___ACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCCCTGCCAAAGATGAACTCAAAGAGGCAGCGAATCGTGATCTTCACCCAAGGGAGAG	out-of-frame	EEEVDSADTGEr|klpllleskalrlktlkr*	.
TALL075	SEC16A	SNHG7	-/-	-/-	9:136474049	9:136725110	splice-site	splice-site	duplication	upstream	downstream	0	2	0	102	769	low	.	.	.	GCCTACCAGCCTCAGTACTCTTTGCCGTACCCACCGGAGCCTGGCGCAGCCTCCCTCTATTACCAG|ATGCAGAGGCCAGGATGTGGGCCCAGCCCTGTGCCAGGAGGCTGGCTGGAATAAAGGTACAGATAGAGGCCTCACCCCCTCTGGGACCACTGGCACTCAGGGTGTTTGCAGCCTCAGAGCCCACCTGCCCCCAGGGCCACAGCTGCATCTCCTGCCCTGCTGTCATTACAGGGATGGGCAGGCTGGCATGGGGGCAGCCGCTGCC	out-of-frame	AYQPQYSLPYPPEPGAASLYYQ|mqrpgcgpspvpggwle*	.
TALL075	CTD-2152M20.2	GOLPH3	-/-	-/-	5:32106124	5:32143880	splice-site	splice-site	duplication	upstream	downstream	1	1	0	4	189	low	.	.	.	AGTAGAGGAAAGTCTTCTAGGACAGGGGTCCTCAACCCTTGGGCCACAGACTGGTGGCAGGAGGGCTGCACAGCAG___ATGGGATGCCTGGTTGCAAGAAAACAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAtAGGCTTGTGGAATGAGACGTAAAAGTCTATTAACAAGAAAG___GTAATCTGTAAGTCAGATGCTCCA	.	.	.
TALL075	SUMO3	ITGB2	-/-	-/-	21:44817948	21:44888895	splice-site	splice-site	duplication	upstream	downstream	0	2	0	957	490	low	.	.	.	CGGCGGGGCCGAGAGCGTGACTCGCCCGCTCCGCGCTGCTTCCCCCGCGCCGCCTCCCCGCGCCGCTCGCGCAGCCATGTCCGAGGAGAAGCCCAAG|CTCCTGCGCCGAGTGCCTGAAGTTCGAAAAGGGCCCCTTTGGGAAGAACTGCAGCGCGGCGTGTCCGGGCCTGCAGCTGTCGAACAACCCCGTGAAGGGCAGGACCTGCAAGGAGAGG	out-of-frame	MSEEKPK|llrrvpevrkgplweelqrgvsgpaaveqpregqdlqge	.
TALL075	BRD9	CLPTM1L	-/-	-/-	5:883938	5:1318453	splice-site	splice-site	duplication	upstream	downstream	1	0	0	169	664	low	.	.	.	AGAAGTTATCAG___CTGCATGTTTGAGCCTGAAGGGAATGCCTGCAGCTTGACGGACAGTACCGCAGAGGAGCACGTGCTGGCGCTGGTGGAGCACGCAGCTGACGAAGCTCGGGACAGGATCAACCGGTTCCTCCCAGGCGGCAAG|GCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGG	out-of-frame	EVISCMFEPEGNACSLTDSTAEEHVLALVEHAADEARDRINRFLPGGK|alscg*	.
TALL075	BRD9	CLPTM1L	-/-	-/-	5:878353	5:1318451	splice-site	splice-site	duplication	upstream	downstream	1	0	0	215	664	low	.	.	.	GGGGCCTGCACACCGAGTCCTTCCAGTGAGTCCAGTGATGCTCTCTCCTCTTCCTCCCAGTCACCTTTCTCTCCAGTGCCACTACTGCGCTTTCGATGCAGAATAATTCAGTATTTGGCGACTT...AGTCGGACGAGATGGAGCTGCTCTACTCAGCCTACGGAGATGAGACAGGCGTGCAGTGTGCGCTGAGGC|TTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAG	in-frame	SDEMELLYSAYGDETGVQCALr|lYPVDKRRVNEFGESYEE	.
TALL075	ZADH2	MEX3C	-/-	-/-	18:75208850	18:51177576	splice-site	splice-site	deletion	upstream	downstream	1	0	0	139	138	low	.	.	.	CCTGGACTTCCAGGGCTCCGCCATTCCCCAAGCCATGCAGAAGCTGGTGGTGACCCGGCTGAGCCCCAACTTCCGCGAGGCCGTCACCCTGAGCCGGGACTGCCCGGTGCCGCTCCCCGGGGACGGAGACCTCCTCGTCCGGAACCG|GTTGTAAAATTAAAGCACTGAGAGCCAAGACAAACACGTATATCAAGACTCCTGTTCGTGGTGAAGAGCC	out-of-frame	LDFQGSAIPQAMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNr|l*	.
TALL075	AC113189.5	EIF4A1	-/-	+/+	17:7583918	17:7577056	splice-site	splice-site	inversion	upstream	upstream	0	1	0	267	4778	low	.	.	.	GCTGAATAAAACTCACCGTGAAGCAAGTCCCACTGAACGAAAAGTTtGTCGTAGCATTTCTCAG|CCCCCAAATACATCAAGATGTTTGTACTtGATGAAGCTGACGAAATGTTAAGCCGTGGATTCAAGGACCAGATCTATGACATATTCCAAAAGCTCAACAGCAACACCCAG___GTAGTTTTGC	.	.	.
TALL075	AC113189.5	EIF4A1	-/-	+/+	17:7583918	17:7574260	splice-site	splice-site	inversion	upstream	upstream	0	1	0	267	2205	low	.	.	.	ACTTGGATCGGATGCTGAATAAAACTCACCGTGAAGCAAGTCCCACTGAACGAAAAGTTGGTCGTAGCATTTCTCAG|ATCCAGAGACAATGGCCCCGATGGGATGGAGCCCGAAGGCGTCATCGAG___AGTAACTGGAATGAGATTGTTGACAGCTTTGATGACATGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTACGCcTATGGTTTTGAGAAG	.	.	.
TALL075	TBCD	FOXK2	+/+	+/+	17:82884936	17:82601303	splice-site	splice-site	duplication	downstream	upstream	1	0	0	91	176	low	.	.	.	CTGGAGTGAGGCaTGTGTCTCTTGGGACCACAGAGAGCGGACAGTTGAGACGGTGGACCAGTCTCAAGATAAGAGTCTTTATTTCAGATACAGATAAGACGCTGAACACGTTTTAAGAGG|CCGCGGCGAGTCCTTTGCACATGTTGG	.	.	.
TALL075	TBCD	FOXK2	+/+	+/+	17:82772507	17:82601303	splice-site	splice-site	duplication	downstream	upstream	1	0	0	297	176	low	.	.	.	CACCCAGCCTGGGCAAGCACGAATGTCCATAATGGACCGTATTCTCCAAATAGCAGAG___TCCTACTTGATTGTCAGTGACAAGGCCCGAGATGCAGCTGCTGTCCTTGTGTCCAG|CCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAA	out-of-frame	TQPGQARMSIMDRILQIAESYLIVSDKARDAAAVLVSs|rgesfahvgntririglpah	.
TALL075	C7orf50	MAD1L1	-/-	-/-	7:1127257	7:1898390	splice-site	splice-site	duplication	upstream	downstream	0	1	0	382	452	low	.	.	.	AGAAGGCGTCAGCAGAGGGGCCACTGCTGGGCCCTGAGGCTGCACCAAGTGGCGAAGGAGCCGGCTCCAAG|AGCTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGG...CGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTC	out-of-frame	KASAEGPLLGPEAAPSGEGAGSK|s*	.
TALL075	MAFK	MAD1L1	+/+	-/-	7:1530898	7:1936897	splice-site	splice-site	inversion	downstream	downstream	0	1	0	78	401	low	.	.	.	GCCGCGCGCtCGCGCCCTCCGCGCGACGCCAG|GGTGtCTATGACCAGAGCAGGACCAAAGTGCTGCACATGAGCCTGAACCCCACCAGTGTGGtCAGGCAGCGCCTGCGCGAGGACCACAGCCAGCTGCAGGCGGAGTGCGAGCGACTGCGCGGGCTCCTGCGCGCCATGGAGAGAGGAGGCACCGTCCCAGCCGACCTTGAGGCTGC	.	.	.
TALL075	BAZ1A	KIAA0391	-/-	+/+	14:34874492	14:35312881	splice-site	splice-site	inversion	upstream	upstream	0	1	0	158	7332	low	.	.	.	CCGCtGACCTGCGGCCCGACGAGGAAGTTTTCTACTGTAAAGTCACCAACGAGATCTTCCGCCACTACGA|GTATGATTTTAATTGGTATAGATGAAGAGCAAGGtCCTCAGGTATATAAGTGTGATCCTGCAGGTTACTACTGTGGGTTTAAAGCCACTGCAGCGGGAGTTAAACAAACTGAGTCAACCAGCTTCCTTG	out-of-frame	ADLRPDEEVFYCKVTNEIFRHYe|ydfnwyr*	.
TALL075	KIAA0391	BAZ1A	+/+	-/-	14:35127611	14:34786001	splice-site	splice-site	inversion	downstream	downstream	0	1	0	232	186	low	.	.	.	AAAAATCATGAGGGATGTGATAGATGGAGGTGACCAGTACAGAAAGACAACACCTCAG|GCTGCAGTTTGAAAAGTTTGGATCTTGATAGCTGCACTCTTTCAGAAATCCTCAGACTGCACATCTTAGCTTCAGGTGCTGATGTAACATCAGCAAATGCAAAGTATAGATATCAA	out-of-frame	KIMRDVIDGGDQYRKTTPQ|aav*	.
TALL075	HNRNPH3	MAPK8	+/+	+/+	10:68341309	10:48431193	splice-site	splice-site	duplication	downstream	upstream	1	0	0	3305	96	low	.	.	.	TGAAAATGACATTGCTAAT___TTCTTCTCACCACTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGAGTTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAACATGC|AATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCA	in-frame	ENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNM|qLIYKEVMDLEERTKNGVIRG	.
TALL075	NKD2	CLPTM1L	+/+	-/-	5:1009082	5:1318453	splice-site	splice-site	inversion	downstream	downstream	0	1	0	610	664	low	.	.	.	CGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG|GCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGGCCACGCGGGCGCCCCACACGGACTGAAGGCCGCCCGGGCTGCCGCCAGCCAAGTGCAACTTGAATTGTCAATGAGTATTTTTGGAAGCATT	out-of-frame	MGKLQSKH|gfilwinae*	.
TALL075	NKD2	CLPTM1L	+/+	-/-	5:1009214	5:1318453	splice-site	splice-site	inversion	downstream	downstream	0	1	0	577	664	low	.	.	.	GCCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG|GCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGGCCACGCGGGCGCCCCACACGGACTGAAGGCCGCCCGGGCTGCCGCCAGCCAAGTGCAACTTGAATTGTCAATGAGTATTTTTGGAAGCATTTGGAGGAATTCCTAGACATTGCGTTTTCT	out-of-frame	AAAARKRRESPE|gfilwinae*	.
TALL075	NKD2	CLPTM1L	+/+	-/-	5:1009560	5:1318453	splice-site	splice-site	inversion	downstream	downstream	1	0	0	515	664	low	.	.	mismatches(1)	CG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGGCCACGCGGGCGC...GAGTATTTTTGGAAGCATTTGGAGGAATTCCTAGACATTGCGTTTTCTGTGTTGCCAAAATCaCTTCGGACATTTCTCAGACATCTCCCAAGTTCCCATCACGTCAGATTTGGAGCTGGTAGCG	out-of-frame	AAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|alscg*	.
TALL075	RBM38	PMEPA1	+/+	-/-	20:57392777	20:57659697	splice-site	splice-site	inversion	downstream	downstream	0	1	0	545	236	low	.	.	.	GTGAACCTGGCATATCTGGGCGCCAAGCCGCGGAGCCTCCAGACGG|CGGAGCTGGAGTTTGTTCAGATCATCATCATCGTGGTGGTGATGATGGTGATGGTGGTGGTGATCACGTGCCTGCTGAGCCACTACAAGCTGTCTGCACGGTCCTTCATCAGCCGGCACAGCCAGGGGCGGA	in-frame	VNLAYLGAKPRSLQT|aELEFVQIIIIVVVMMVMVVVITCLLSHYKLSARSFISRHSQGR	.
TALL075	SBNO2	CIRBP	-/-	+/+	19:1147309	19:1270867	splice-site	splice-site	inversion	upstream	upstream	1	0	0	35	447	low	.	.	.	GCCCGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTGCAGTGGGGCCCGCCATGGACAGGGATTACCCGCAGCATGAACtCCCGCCGGCGGGCAGCCTCCTGTACAGCCCGCCGCCC...CCGTGGCCACCGCCTCCAGCTTGCCACCAAAGACCTGCGACTTTGCTCAG|GAAGCGGGGAGAGGTGGTGAGAGATGACCCCTGTTGAGGATTTCATTGGTGTCTGCCACAGGCCGC	out-of-frame	VATASSLPPKTCDFAQ|eagrgger*	.
TALL075	SBNO2	CIRBP	-/-	+/+	19:1174172	19:1270867	splice-site	splice-site	inversion	upstream	upstream	0	1	0	22	447	low	.	.	.	AGCTGCGAGGCTCGGAGAAACAGGCGCCGCGGGCTCCGCGCCCGGCCGGACCCGGGCCCGAG|GAAGCGGGGAGAGGTGGTGAGAGATGACCCCTGTTGAGGATTTCATTGGTGTCTGCCACAGG...GAGTTTTGACACCAATGAGCAGTCGCTGGAGCAGGTCTTCTCAAAGTACGGACAGATCTCTGAAG___TCTGTAGATGGACGGCAGATCCGAGTAGACCAGGCAGGCAAGTCGTaAGACAACCGAT	.	.	.
TALL075	SENP3-EIF4A1	EIF5A	+/+	+/+	17:7563791	17:7309615	splice-site	splice-site	duplication	downstream	upstream	1	0	0	418	4971	low	.	.	.	GGCTGGGTCTGCTAGaTGCTCTCATGGCTGAGGATGGGGTGAGAGGGTCTCCACCAGTGCCCTCTGGGCCCCCCATGGAGGAAGATGGACTaAGGTGGACTCCAAAGTCTCCTCTGGACCCTGACTCGG|TTGGAATCGAAGCCTCTTAAAATGGCAGATGACTTGGACTTCGAGACAGGAGATGCAGGGGCCTCAGCCACC	out-of-frame	LGLLdALMAEDGVRGSPPVPSGPPMEEDGLRWTPKSPLDPDS|vgieas*	.
TALL075	SENP3-EIF4A1	EIF5A	+/+	+/+	17:7572864	17:7309615	splice-site	splice-site	duplication	downstream	upstream	0	0	0	1294	4971	low	.	.	mismatches(1)	TGCGAGCCAGGATTCCCG|TTGGAATCGAAGaCTCTTAAAATGGCAGATGACTTGGACTTCGAGACAGGAGATGCAGGGGCCTCAGCCACCTTCCCAATGCAGTGCTCAGCATTACGTAAGAATGGCTTTGTGGTGCTCAAAGGCCGGCCATGTAAGATCGTCGAGATGTCTACTTCGAAGACTGGCAAGCAC	out-of-frame	ASQDSr|wnrrllkwqmtwtsrqemqgpqppsqcsaqhyvrmalwcskaghvrssrcllrrlas	.
TALL076	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	9	0	34	21	high	.	.	duplicates(1),mismatches(1)	AGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCC	.	.	.
TALL076	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	4	10	1	44	16	medium	.	.	low_entropy(1),mismappers(1),mismatches(2)	GCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGC	.	.	.
TALL076	FMR1	ZHX3	+/+	-/-	X:147937600	20:41185201	splice-site	splice-site	translocation	downstream	downstream	2	0	0	24	3	medium	.	.	.	TGAAAATGAGAAAAATGTTCCACAAGAAGAG___GAAATTATGCCACCAAATTCCCTTCCTTCCAATAATTCAAGGGTTGGACCTAATGCCCCAGAAGAAAAAAAA?ATTTAGATATAAAGGAAAACAGCACCCATTTTTCTCAACCTAACAGTACAAAAGTCCAGAGG|AAACAGACTGAATTTGATCTGATTAATGTGAAGGACTGGCC	out-of-frame	ENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKK?LDIKENSTHFSQPNSTKVQR|kqtefdlinvkdw	.
TALL076	TFRC	JAK3	-/-	-/-	3:196053418	19:17838390	splice-site	splice-site	translocation	upstream	downstream	2	0	0	179	66	medium	.	.	.	ACAACAGCCAACTGCTTTCATTTGTGAGGGATCTGAACCAATACAGAGCAGACATAAAG___GAAATGGGCCTGAGTTTACAGTGGCTGTATTCTGCTCGTGGAGACTTCTTCCGTGCTACTTCCAGACTAACAACAGATTTCGGGAATGCTGAGAAAACAGACAGATTTGTCATGAAGAAACTCAATGATCGTGTCATGAGA|AAAAGTCCAACCTGATCGTGGTCCAGAGAGGTCACAGCCCAC	out-of-frame	NSQLLSFVRDLNQYRADIKEMGLSLQWLYSARGDFFRATSRLTTDFGNAEKTDRFVMKKLNDRVMR|kspt*	.
TALL076	YAF2	ZNF217	-/-	-/-	12:42237599	20:53583168	splice-site	splice-site	translocation	upstream	downstream	0	2	0	6	11	medium	.	.	.	AGCGTCTGCACCTTCCGGAACAGCGCCGAGGCCTTCAAGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCCG|GGTTTGGAAATCCCTTGTCTCCAGGTTGCTGGGATTGACTTCTTGCTCAATTGAAACACTCATTCAATGGAGACAAAGAGAACTAATGCTTTGTGCTGATTCATATTTGAATCGAG	out-of-frame	SVCTFRNSAEAFKCMMCDVRKGTSTr|vwkslvsrllgltscsietliqwrqrelmlcadsylnr	.
TALL076	FIP1L1	N4BP2L2	+/+	-/-	4:53399839	13:32527532	splice-site	splice-site	translocation	downstream	downstream	0	2	0	63	158	medium	.	.	.	GTTCAAGACTGGGCTTCCACCGAGCAG|AATTCTGCTTGGTCAGAATCGTGATGGCATTGTGTTCAGCACTGATGACTATTTTCACCATCAAGATGGGTACAGGTATAATGTTAATCAACTTGGTGATGCCCATGACTGGAACCAGAACAGAG___CAAAACAAGCTATCGATCAG	in-frame	FKTGLPPSr|ILLGQNRDGIVFSTDDYFHHQDGYRYNVNQLGDAHDWNQNRAKQAID	.
TALL076	RORB	RP11-644C3.1(114611),MTND5P15(28270)	+/+	./-	9:74497983	3:176982449	splice-site	intergenic	translocation	downstream	downstream	2	0	0	37	3	medium	.	.	.	GTCACCCTGCAGCCACGGCGTCCGCCTAAAGGGATGGTTTTCTCGGCAGAGCAGCTCTTCGCCGACCACCTTCTTCACTCGTGCTGAGCGGGATTTTTGGGCTCTCCGGGGTTCGGGCTGGGAGCAGCTTCATGACTACGCGGAGCGGGAGAGCGGCCACACCATGCGAG|ATCTCCTTGAGTGTGTGATGACAGTGACCGGG	out-of-frame	MR|dllecvmtvt	.
TALL076	VTI1A	TNPO1	+/+	+/+	10:112538330	5:72861808	splice-site	splice-site	translocation	downstream	upstream	2	0	0	42	4	medium	.	.	.	ACAAGAAATGGGAAAACTCGAAACAGATTTT___AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTGGGGGATGATGGGAATTCCTCAGAGAACCAG___AGGGCACATCTGCTCG...GAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGATACCAAATAGCAGTGGAAACCG|GTATTTTGATCACAACTATAGCCTCCAAGGGAGAATTGCAGAATTGGCCTGACCTCTTACCAAA	in-frame	ERLERSSRRLEAGYQIAVET|gILITTIASKGELQNWPDLLP	.
TALL076	GAPVD1	SCAI	+/+	-/-	9:125299106	9:124952953	splice-site	splice-site	inversion	downstream	downstream	0	2	0	7	23	medium	.	.	.	ATTTGGATCGGCTTATCATAACCAG|GAAACACGAAATTATCCAGAATCATATCCACAACTGCCAAGGGATGAAACAGTGGAGAATCCTCATCTCCAGAAGCACATTTTGGAATTAGCATCCATTCT...AGAATACCATTGATGACTATTAAAACAAAAACCCTGTTGTCGAAACAAGTTTTCATTTTCCACAAATTTTAAATGGTGCAGTTTTCTAACGTGATAAGACACATAGTGGTGTTACTTAGTTTTTAT	out-of-frame	LDRLIITr|kheiiqnhihncqgmkqwrilisrstfwn*	.
TALL076	ST3GAL1	EGLN2	-/-	+/+	8:133571693	19:40806555	splice-site	splice-site	translocation	upstream	upstream	0	2	0	55	32	medium	.	.	.	CCTCCGAACCCCTTCATGCCCAAATCCCGGAAACTCCAGCGTGTCTCCAGCCGTG|GCCATGGTGGCGTGTTACCCAGGCAACGGGCTCGGGTACGTAAGGCACGTTGACAATCCCCACGGCGATGGGCGCTGCATCACCTGTATCTATTACCTGAATCAGAACTGGGACGTTAAG___GTGCATGGCGGCCTGCTGCAGATCTTCCCTGAGGGCCGGCCCGTGGTAG	.	.	.
TALL076	SERTAD2	MARCH6	-/-	+/+	2:64666798	5:10377798	intron	splice-site	translocation	upstream	upstream	2	0	0	4	69	medium	.	.	.	ACCAAGATTTCACTTTTTAGTGCTGAGTTCTTTGTCATTTTAAGGAAGTAACAAGAAGCCTTCCATATTTTGTGAGGAAGATTTATCCTTGTTAGCATGATAGAAGTTCGCCTGGCAG|ACATATGTAGAGTGTGTCGGTCAGAAGGAACACCTGAGAAACCGCTTTATCATCCTTGTGTATGTACTGG	.	.	.
TALL076	ZEB1	CCAR1	+/+	+/+	10:31319292	10:68722455	splice-site	splice-site	deletion	downstream	upstream	0	2	0	15	53	medium	.	.	.	ATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCAATAACG|ATCGATGCTATAGAAGACAAACAAGGGAAGGTTTTTTTTCCTTTTGCATCATGGCTCAATTTGGAGGACAGAAGAATCCGCCATGGGCTACTCAGTTTACAGCCACTGCAGTATCACAGCCAG___CTGCACTGGGTGTTCAAC	in-frame	GPRCKRRKQANPRRNN|dRCYRRQTREGFFSFCIMAQFGGQKNPPWATQFTATAVSQPAALGVQ	.
TALL076	BAZ1A	ZBTB1	-/-	+/+	14:34874492	14:64511249	splice-site	splice-site	inversion	upstream	upstream	0	2	0	28	10	medium	.	.	.	GAAGTTTTCTACTGTAAAGTCACCAACGAGATCTTCCGCCACTACGA|TGCCCTCTGGTGGTCAGAAGATGCTGTGCTGTCTCGTTAGGATGAATGGATTAAAATGTACTTTTCCTCCTCTGCTTC...GAGGGAGAGAGGAATATTCCAGAAGCCACTGTGTTCCTTCTGCTTTCTGTGTGG___GTCTCTAATTAACAGAAGATGGCAAAGCCCAGCCACAGCAGCTATGTCCTTCAGCAGCTAAACAACCAAAG	out-of-frame	EVFYCKVTNEIFRHYd|alwwsedavlsr*	.
TALL076	BAZ1A	ZBTB1	-/-	+/+	14:34874492	14:64516600	splice-site	splice-site	inversion	upstream	upstream	1	0	0	28	27	low	.	.	.	CAGTCGGCGTGATCGCAG___GGAAGCGGGGCCGGCGCGGGCGGCCGAGGGTCCAGGCGAGCCCGCGGGCGGACGGGAGATGCCGCTGCTACACCGAAAGCCGTTTGTGAGACAGAAGCCGCCCGCGGACCTGCGGCCCGACGAGGAAGTTTTCTACTGTAAAGTCACCAACGAGATCTTCCGCCACTACGA|CATGATGCCTTCTTCTGTAGAGTGGGCGCTTTGCAGAATACGT	out-of-frame	MPLLHRKPFVRQKPPADLRPDEEVFYCKVTNEIFRHYd|mmpssvewalcri	.
TALL076	RNF220	SIAH1	+/+	-/-	1:44412722	16:48362430	splice-site	splice-site	translocation	downstream	downstream	2	0	0	54	60	medium	.	.	.	ACTTTGGGACACAGCTGCCATCTAGCTCCCCCGGTTCACTAAAGGTTGATGACACTGGGAAGAAGATTTTTGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGAT|AAATGAGCCGTCAGACTGCTACAGCATTACCTACCGGTACCTCGAAGTGTCCACCATCCCAGAGGGTGCCTGCCCTGAC	out-of-frame	FGTQLPSSSPGSLKVDDTGKKIFAVSGLISDREASSSPEDRNDR|*	.
TALL076	ZNF394	DIAPH1	-/-	-/-	7:99498716	5:141534433	splice-site	splice-site	translocation	upstream	downstream	0	2	0	38	110	medium	.	.	.	CGCCTGGACCCAGCACGGAGGGACTTCTGCAGAGAGAGTGCGCAGAAGGATTCCGGGAGCACAGTTCCGCCGA|CCAAGAAGGATCAAGAAGGTGGAGAAGAAAAGAAATCTGTGCAAAAGAAAA...GCTACAATTCAGCGAGCAAGTGGAGAATATCAAGCCAGAGATTGTGTCTGTCACTGCTGCATGTGAGGAGTTACGTAAGAGTGAGAGCTTTTCCAATCTCCTAGAGATTACCTTGCTTGTTGGAA	in-frame	RLDPARRDFCRESAQKDSGSTVPP|tKKDQEGGEEKKSVQKK	.
TALL076	BLCAP	NFIL3	-/-	-/-	20:37527793	9:91410906	splice-site	splice-site	translocation	upstream	downstream	0	2	0	6	73	medium	.	.	.	CTGAGGTGGAGGCAGGCTGCGGCAGACGGCGACAGTGGCGGCGGCGCCATGGCAGGGCTTGCAG|ATAACGAAGGAGGCCCAACTTCATTCAATAAGGAGCCTGACGGATTTATCCCAGACGGTAGAACAAAAGGAAGAATATTGATGGATTTTAAACCAGAGTTTTTAAAGAGCTTGAGAATACGGGGAAATTAATTTGTTCTCCTACACACATAGATAGGGTAAGGTTGTTTCTGATGCAGCTGAGAAAAATGCAGACCGTCAAAAAGGAGCAGGCGTCTCTTGATG	.	.	.
TALL076	EIF3A	CDC42	-/-	+/+	10:119051199	1:22078429	splice-site	splice-site	translocation	upstream	upstream	2	0	0	104	130	medium	.	.	.	AGAAAGA___ATTACTACAATGCAGCTAGAACGTGAAAAGGCTCTTGAACATAAGAATCGAATGTCACGAATGCTTGAAGACAGAGATTTATTCGTAATGCGACTCAAAGCTGCACGGCAGTCTGTTTATGAG|GTCATCATCAGATTTGAAATATTTAAAGTG	out-of-frame	ERITTMQLEREKALEHKNRMSRMLEDRDLFVMRLKAARQSVYE|viirfeifk	.
TALL076	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	1	3	1	6	10	low	.	.	low_entropy(1),mismappers(1)	TTTTTTTTTTTtGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTtTTGTTTTGGACATTTTT...GAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGC	.	.	.
TALL076	AC079781.7(1482),AC079781.8(28533)	ASNS	./-	-/-	7:97909906	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	0	1	2	7	16	low	.	.	.	GGTCATCTCAGCTCATGAGCTGAGCTTTCAGTGGGTGCTCAGTGGAACAGATGCTGAATGGAGTCAGGCTGTAGGGAGGCCAGcGTGTGTTG|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCG...CGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___TGTCTGAGTGCTATGAAGATTGC	.	.	.
TALL076	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	1	0	4	10	low	.	.	mismappers(2)	ACGGGTGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTA	out-of-frame	RVFDHKQGTYGGYFRDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTF	.
TALL076	ING3	ANAPC7	+/+	-/-	7:120955775	12:110377456	3'UTR	CDS	translocation	downstream	downstream	0	0	2	39	69	low	.	.	.	GCCATAAGTACTTGAATAACAGATTATATCTTAAATTGTATTGGCTTAAATGTAGTAGGAAGAAGCAACTAAAACTGAAGTATTGCTCTCTTGATCACATCTAATTTGACATTTCAGTGTCCATT...|...GATAAAGCCCTGACCCAAAGGCCAGATTACATTAAGGCTGTGGTGAAAAAAGCAGAACTACTTA___GCAGAGAACAGAAA-ATGAAGATGGAATTGCTTTGCTGAGGAACGCACTGGCTAATCAGAGT	.	.	.
TALL076	EML2	EML2	-/.	-/.	19:45619521	19:45620902	intron	exon	duplication	upstream	downstream	0	2	0	5	11	low	.	.	.	.	.	.	.
TALL076	CFLAR	INTS3	+/+	+/+	2:201133043	1:153771886	CDS	CDS	translocation	downstream	upstream	0	2	0	61	127	low	.	.	.	TGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAG___AGTGCTGATGGCAGA|GAAACATGACGAGCTGCTGGCCGAGCACATCAAGTCCCTGCTCATCAAGAACAACAGCCTGCCTCGCAAGAGACAGAG___CCTGAGGAGCTCTAGCAGCAAGCTGGCCCAGCTGACTCTGGAGCAGATCCTGGAGCACTTGGACAATCTGCGGCTCAA	in-frame	KMDRKAVETHLLRNPHLVSDYRVLMAe|KHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRL	.
TALL076	RP11-66N24.4	BRD1	+/+	-/-	14:23559981	22:49793219	exon	intron	translocation	downstream	downstream	0	0	2	225	6	low	.	.	duplicates(1)	CAAGTTGTTCACCTCAAAGATCTCCTGCACCGACTGGTGAAAGTGGTCGTAGGTGAGGCGCAGCTTTAGCCGCAGGGGGGC___CTTGTTAGGATTGAGGATTCTGAAGAGCTGGGTGATAGGAAGGC...|...AAATCGGATTTGGAGACGTTGATAGAAAGTCATTGCCACTGTGTTTTGCCGTGTGTCTCTGCAGTTGACCTTGACACGCTCCGGTTACACGAAGCAGACAGTAGGGTCAGACCCTCTTGCCAC	.	.	.
TALL076	THTPA	BRD1	+/+	-/-	14:23559981	22:49793219	3'UTR	intron	translocation	downstream	downstream	0	0	2	225	6	low	.	.	duplicates(1)	CAAGTTGTTCACCTCAAAGATCTCCTGCACCGACTGGTGAAAGTGGTCGTAGGTGAGGCGCAGCTTTAGCCGCAGGGGGGC___CTTGTTAGGATTGAGGATTCTGAAGAGCTGGGTGATAGGAAGGC...|...AAATCGGATTTGGAGACGTTGATAGAAAGTCATTGCCACTGTGTTTTGCCGTGTGTCTCTGCAGTTGACCTTGACACGCTCCGGTTACACGAAGCAGACAGTAGGGTCAGACCCTCTTGCCAC	.	.	.
TALL076	UBE2D3	AC116366.6	-/-	-/-	4:102826634	5:132470518	5'UTR	exon	translocation	upstream	downstream	0	0	2	66	60	low	.	.	.	CTGTTGGTGGCTTTGCCACGCCACCCCACCCACCCCGGATCGCGGCTGTCTTAAGGGACCTGGATTCATCAGGGGCTCTTCGGGGCCTGTGCGAGTGCTGATCTGCTCCGTTTTTGCAAAAGGCG...|...CTAGGCTCCTGTCTCAGCTTCTGCTGAAGGCTATTTTCTTCCTTGTATTCTGCAGTGACCAGGCATATGGCAGATAATCAACAAATACAGGCATCCCTGAAGAGGGTATCCTGGGATAAAAG	.	.	.
TALL076	HDAC2	HDAC2	-/-	-/-	6:113943474	6:113944128	CDS	intron	duplication	upstream	downstream	0	2	0	170	9	low	.	.	.	CTGTGCAGTTCGAGCATCAGACAAGCGGATAGCTTGTGATG|TCTCAGAACCTGATTTGGGTGTCAGCAGTTTCAGTTTGTATGGCTGGATATACATATATGATTGAAAGTTTTCAAAAATTAGCAACTTTAGTATATTTGGAAATTAATAAGACATCTCATTTATCTAAAGcAGGG	out-of-frame	caVRASDKRIACD|vsepdlgvssfslygwiyiyd*	.
TALL076	UBE2D3	C5orf56	-/-	+/-	4:102826634	5:132470518	5'UTR	3'UTR	translocation/5'-5'	upstream	downstream	0	0	2	66	60	low	.	.	.	CTGTTGGTGGCTTTGCCACGCCACCCCACCCACCCCGGATCGCGGCTGTCTTAAGGGACCTGGATTCATCAGGGGCTCTTCGGGGCCTGTGCGAGTGCTGATCTGCTCCGTTTTTGCAAAAGGCG...|...CTAGGCTCCTGTCTCAGCTTCTGCTGAAGGCTATTTTCTTCCTTGTATTCTGCAGTGACCAGGCATATGGCAGATAATCAACAAATACAGGCATCCCTGAAGAGGGTATCCTGGGATAAAAG	.	.	.
TALL076	ACCS	FMR1	+/+	+/+	11:44079521	X:147948560	exon	intron	translocation	downstream	upstream	0	2	0	168	10	low	.	.	.	TTCTGATGTATTACCTCCCCACCCTGTGGGACGCATCTGCCCTACACACTAAGTCTCTCCTCCCCACCCCTGCC|TCTCATCTCCATTTCTCTTTTTAACATGTGGAATTTACACTTCAGGTTTA...ACAGTAGGATATGGTCTGTGTATATAACAACTATAACTTGTTTTAGATCAGAGTTGACTGCAATAATGAAAGGAGTGTCCACACTAAAACATTACAGAATACCTCCAGTGAAGGTAGTCGGCTG	.	.	.
TALL076	DNAJC9	RAC2	-/-	-/-	10:73242906	22:37225354	3'UTR	3'UTR	translocation	upstream	downstream	2	0	0	129	137	low	.	.	duplicates(2)	CTGCGATGTGCGTGTCTGTTAGAATAGGCTCTCTACCCAGCTAGAACACCTTCCAGACACTTGCTGGACAGCTATCTTCCACATACTTCCCAGTTTACATTTGGTCTTAATGATCTTGAATAGATCCTCTCTTCATTTTACTCAGCCAGGTTTTGTACT|AAACCTTGCCAGTCAGGACTTTTGCTATTGCAAATAcAAAACCCAACTCAACCTGCT	.	.	.
TALL076	RP11-61J19.5	LDHA	-/-	+/+	1:212557930	11:18407443	exon	3'UTR	translocation	upstream	upstream	0	2	0	1	521	low	.	.	.	TGCATCCTTAAAATTTTCTGTTTCAAGTTTTTAAAGGCT|GTAAAATCCACAGCTATATCCTGATGCTGGATGGTATTAATCTTGTGTAGTCTTCAACTGGTTAGTGTGAAATAGTTCTGCCACCTCTGACGCACCACTGCCAATGCTGTACGTACTGCATTTGCCCCTTGAGCCAGGTGGATGTTTACCGTGTGTTATATAACTT	.	.	.
TALL076	RRP9	UBA6	-/-	-/-	3:51934705	4:67650032	CDS	intron	translocation	upstream	downstream	0	0	2	23	5	low	.	.	.	ACTGCATCCACCTAATCAATGAGGAGCACATGGTGTCCGGCGCGGACGATGG___CTCTGTGGCCTTGTGGGGTCTCTCCAAGAAGCGACCACTTGCCCTGCAGCGTGAAGCTCACGGGCTGCGGGG...|...ATAGTAAGTAGTAACCATTTTGTGTCACAAATATTTTTGAGAGTGTAATAAAAACTCTTCTCTGTCCTCTCCTCTGTGTACAAGAACTCTTCTTTTACATAGGATTTCAAAAGATTAATTAGGC	.	.	.
TALL076	INPP5D	ATG16L1	+/+	+/+	2:233198357	2:233243486	CDS	intron	deletion/read-through	downstream	upstream	0	0	2	49	3	low	.	.	.	ACGACCAGCCGCCCAAGGACTCCCCGCTGGGGCCCTGCAGGGGAGAAAGTCCTCCGACACCTCCCGGCCAGCCGCCCATATCACCCAAGAAGTTTTTACCCTCAACAGCAAACCGGGGTCTCCCTC...|...AGTCTTGGGTGGCGAGTGAAGATAATAGCTCAGTGTAAACTAGCTTAAGTGACCTGCGGGACTGTGTTGGCTCAAGTCCTGGTGGGGAGAATAGGGCTGGGCTAGTTGCAGGACTGGCTGGAAC	.	.	.
TALL076	METTL14	MBOAT1	+/+	-/-	4:118710154	6:20152727	CDS	CDS	translocation	downstream	downstream	0	0	2	20	11	low	.	.	.	AGCAACTACAATGCAGAAACATATGCATCCTATTTCAGTGCTCCTAATTCCTACTTGACTGGTTGTACAGAAGAAATTGAGAGACTTCGACCAAAATCGCCTCCTCCCAAATCTAAATCTGACCG...|...TTCTGGTTTCGCATCTACTTACGTCCTGGTACAACCAGCTCTGATGTCCGGCATGCGGTTGCCACCATTTTTGGCATCTATTTTGTCATCTTTTGTTTCGGCTG___GTACTCTGTGCATCTTTTT	.	.	.
TALL076	POLD1	UTY	+/+	-/-	19:50406487	Y:13335610	CDS	CDS	translocation	downstream	downstream	2	0	0	30	18	low	.	.	.	CGGGACACCAAGGTTGTCAGCATGGTGGGCCGCGTGCAGATGGACATGCTGCAG___GTGCTGCTGCGGGAGTACAAGCcCCGCTCCTACACGCTCAATGCCGTGAGCTTCCACTTCCTGGGCGAGCAGcAGGAGGAC|GTCAGTGTCTATATGCCCCAGTTCAACAGAAGTTCTGAAAGCATGCAG___GAATCCAGGTAAAAATGcCTTGTCTAATAGCTGCATTTTGTTAGATAAA	out-of-frame	RDTKVVSMVGRVQMDMLQVLLREYKpRSYTLNAVSFHFLGEQqED|vsvympqfnrssesmqesr*	.
TALL076	RP11-252E2.1	MAPK8	-/-	+/+	16:75108793	10:48439052	exon	3'UTR	translocation	upstream	upstream	0	2	0	40	75	low	.	.	.	CTGACTTGCCACTCCCTCCACCCAGGCCTGACTATCTGAGGACCAATTCACACACCTGGAGCCCCGAGTAGCAGCCTGAAGGAATGCTAAGGAG|TTTATCCTGGTCAGCAGGGTGTCACACCTG...CCTGTGTTCCGTTCCCTCTCCTTTCCTCTAGACAAAACAAAATGGGGCACTTTTTAGGGAATGCTGAGATCATTATTGTGGTTTTTCATCATTCATGCCCTAGTCATTAAACATGCACCACTGG	.	.	.
TALL076	EIF6	APLP2	-/-	+/+	20:35279206	11:130121655	CDS	CDS	translocation	upstream	upstream	0	0	2	0	107	low	.	.	.	GTGTGCCTTCTGTGGCCTGGACACAACCAGCACAGAGCTGTCAGTGGTGGAGAGTGTCTTCAAGCTGAATGAAGCCCAGCCTAGCACCATTGCCACCAGCATGCGGGATTCCCTCATTGACAG___C...|...GCTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAG	.	.	.
TALL076	EIF4E3	TOP2B	-/-	-/-	3:71683954	3:25660820	3'UTR	intron	deletion	upstream	downstream	0	0	2	31	3	low	.	.	.	TTTTAAAACATTTTTTTTTAGTGATAAAAGGAAAATAATAGTTGGATTGCATAACATGAAAACTATAATCACAATTCAGTATCAGGATATAAATCAAGCTCTAAGTCTTTGGACCCTCTGTGG...|...ATATATAACATATTTTTGGAGTGTGAATATCTCTAATTAAACATGACTATGTATTTAAATATTGTTTAAAGATTTATTTTAAGAACCTTGCTTTAGTGGTTTACTGTTGCGAGTCTAAATTGCTG	.	.	.
TALL076	FAM179B	PRPF39	+/+	+/+	14:45068643	14:45095221	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	19	44	low	.	.	.	ATTCCTCTACTTAGAGACCACTTATCTCCTATAATCAACATGCTAATTCCAGCAATAGTGGATAACAATCTGAATTCCAAGAATCCAGGCATCTATGCGGCTGCTACAAATGTTGTTCAGGCACTGAGTCAGCATGTAG|ATCGTTAACTGAAGACAATATGCAAAATTCTC	out-of-frame	IPLLRDHLSPIINMLIPAIVDNNLNSKNPGIYAAATNVVQALSQHV|dr*	.
TALL076	AMT	ZRANB2	-/-	-/-	3:49417382	1:71064661	3'UTR	3'UTR	translocation	upstream	downstream	0	0	2	69	260	low	.	.	.	TTTTGCCCCTACAAGGGGTTAGTCAAGAAGCTGAGGCAGAACTCACTGGGGGTGGGCAGTTAAGGTGGAGGCTGATTCTAATTGTCTGGTTGAGGGGCCACACCACCTATTCCCCCCACCTAAC...|...AGTCAGCCTTTTTATGCTGTTAACAGATGTCAGAGTGATTCTCACCAAAAAAAGTTAAACTATGTTGTAAGCAGCCAACTGTAAATGTCTATTTTGAAATTCCCTATGCTAAGGGTGCCTTAGAAT	.	.	.
TALL076	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	0	103	13	low	.	.	.	CTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG___CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGAC	out-of-frame	LLP*lsvs*glpshasctacrt|hwqqrpllhreggq*	.
TALL077	BCL11B	Y_RNA(4232),RNA5SP200(33995)	-/-	./-	14:99271161	5:173258522	splice-site	intergenic	translocation	upstream	downstream	31	276	41	691	774	high	.	.	duplicates(22),inconsistently_clipped(12),mismatches(21)	AGGAGGTGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCAGCGGCGCGGCGGCGGCTCGGACCCCCTCCCCCGGCTCCCCCCATCAGTGCAGCTCTCCGGGCGATGCCAGAATAGATGCCGGGGCAATGTCCCGCCGCAAACAGGGCAACCCGCAGCACTTGTCCCAGAGGGAGCTCATCACCC|GAAATTACCAAATCAGCCTCCAACCTGGGTAACACCAGCTGATAAAGCGACTCCTTTGCAAGGCTGGTGTCTGCATGGGAACATGAAAACCCAAGGCTATCCCTGTGTGCCGGAAAAGCATCAGACCAGAGGCCATG___CATCCACACGGTGCAAATCAAGATGAACCAGATCCCCGGCAGACCACACAGTCCAAGCAAAGGACGCAGTCATTGTTTAGCACATCCATGGCTCAGCAGTTGGAAATATCCACCGTCTCCAGCACAG___GAGAAAACGGTGATGACATCTTTTTGGCCAGATGGAACTGATGGAAGATTTATGGAGCAGCTGAGAACTGTCAGAGCCAGGCAGAGCCCAGAAGACAGTGACCGTGGCCTTTTCATCAGGGAGCACACTGTTTTCTGGACTCTGCTAACACAAGAGAGCCCTATCTACCCAGTCATCAGTGAGGTTATCCCAA	out-of-frame	MSRRKQGNPQHLSQRELIT|rnyqislqpg*	.
TALL077	PTEN	MED6P1(8171),RP11-129G17.2(201135)	+/+	./+	10:87925557	10:88057994	splice-site	intergenic	deletion/read-through	downstream	upstream	32	28	3	828	75	high	.	.	low_entropy(2),mismatches(4)	G___...CCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCT___ATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAG___GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT|ATGCCgTTTGGAGTAGCTACTTTGAGGACAAGAGACAAAAAGCCTGAGGAGAAAGTCACCATGAAGGAAACAGAAAGAcTAAACAGCATGCGTGATCTTTGATTCAGAGTCCCCATCTCACCCTGGACTGCCTTCCTTTGGAATTCCCTTGTGGAAAAAAAAATTAAACTCTTATTTGGTTAAATAATT___GTGACATCTGAGCTGAGACTTGAATGAAGAAAAGCTGTCCATGTAAAGATCTGGGAGCAGAAGGATCCAGGCAGAG	out-of-frame	MTAIIKEIVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNl|crle*	.
TALL077	MTAP	CDKN2B-AS1	+/+	+/+	9:21838010	9:22046751	splice-site	splice-site	deletion/read-through	downstream	upstream	24	16	5	144	82	high	.	.	duplicates(5),low_entropy(3),mismatches(13)	CAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACAtATCAAAGGAGAATTTTCTTGGAAAGAGAG___TAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCcCGACCTCGTGATTCGCC	out-of-frame	KVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|cpf*	.
TALL077	CDKN2A	MTAP	-/-	+/-	9:21994139	9:21904258	splice-site	intron	deletion/read-through/5'-5'	upstream	downstream	20	7	1	47	46	high	.	.	low_entropy(3),mismappers(1),mismatches(3)	CGCAGCGGCTGCCGAGCTCGGCCCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAACACACAGGCAGCTGGATGTTGAGAGGAGCACATCAGCAGGCACCAGCACACTGGCAGGCCACTGACCAGCAGAACGCCTTGGAGTTTGGCCAGGGCAGTCGGAGGACAGCCCAGGCCGCCCAGGCTGC	out-of-frame	MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg*	.
TALL077	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	12	13	3	75	107	high	.	.	low_entropy(1),mismatches(5)	AAGAAATCTCCCCCTCG___...T?TTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCG	.	.	.
TALL077	GFRA4	ATRN	-/-	+/-	20:3663354	20:3647187	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	7	10	0	224	167	high	.	.	duplicates(1),low_entropy(3),mismatches(3)	GCTGGGTTTTCACTGTGCTCCTGCTCCAGAGGCACTAGGAAGGGGGCGCCTATCAGACTAGGGCTCTGCCAGCCATCCTTCTCTGTTGAAGGTCCAGCATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGG|TTGAGACAGTCCCAAGAACAGTTTTCCACAGTGAACCTGAGTGTCATTCCTAGTTCTCTCACTGGCTCTACACTGGCCTCCTCCAGCAACCATCAGCTCATCCCTGGACCTGTAATTAAATCAAGTATTTCCTATGCAAAAGTAAAAGGTTAGATGCTGGAACACGGATGGGAGAAACCGTCAAAGAAAGCTTGTGATCATGCAG___GGACACGGATGAAGCTGGAAGCCATCAGTCTCAGCAAACCAACACAGGAACAGAAAACCAAATACTCCATGTCCTCACTCTTAAGTGGGAGTTGAACCATGAGAACACATGGACACAGGGAAGGGAAC...GCAGCAAATCCACAAGGAAGAGCATGAAGCCAACGGCAACAGCTTCTAAGTTGGTCAAGAGCCTGCCGCTGCTGCTGAGAGGCGAGGACCCTGGTGTCACTCAGAAACCTCTCTTGGGTCCACCC	out-of-frame	MVRCLGPALLLLLLL|vetvprtvfhsepechs*	.
TALL077	AC013463.2	SCN2A	+/+	+/+	2:165208265	2:165295773	3'UTR	splice-site	deletion/read-through	downstream	upstream	14	1	0	35	46	high	.	.	low_entropy(1),mismappers(6),mismatches(1)	AG___...TAA??GGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG___ACCATTATTTCCCAGACAGTGATTGGAGGAATACTACTGTTCTGCTGGACTAATGAAGTGCCACTCCACATCCACCAGAATGGCTACAACTTAAAAAGGCTTATCATACTGTTTGTGAGAATCTAGAGCTACAGAAGCTGTCAGAGACTTCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGGATGAGGATGATGAAAATGGCCCAAAGCCAAACAGTGACTTGGAAGCAGGAAAATCTCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGTGCCCCTGGAGaAT	.	.	.
TALL077	AC013463.2	SCN2A	+/+	+/+	2:165139709	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	4	1	0	216	46	low	.	.	.	GCAAAAATGAAGACGATGATGGCCAACACCAAG___TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCC	.	.	.
TALL077	AC013463.2	SCN2A	+/+	+/+	2:165195083	2:165295773	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	46	46	low	.	.	.	CTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG|CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGGAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAGGAACGCAAGG	.	.	.
TALL077	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	3	1	1	34	22	high	.	.	.	TTTACTTAGATCAATCAAACGTGTGTGGTGCGGGCCTCACTTCCAGGTGGAAGCAATAAAAGTAGGTCTGCCCTCCCCAAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAA	.	.	.
TALL077	CCDC26	LINC00976(136388),LINC00977(114078)	-/-	./-	8:129574882	8:129102389	splice-site	intergenic	deletion	upstream	downstream	1	3	0	209	87	high	.	.	low_entropy(1)	GGCAACTGCAGAGTCTTAGGGGGTTATCTAATGTAGTCTTGGGGTGGCTGGATAGACTTCCCAAAGAAGGTGATGCCGAAGCTGAGGTCGGAAATTACGAAGATCAGCTAT|AGAAACATCATCAGTGGTGTAGAAGAGCTCAGGGAAGCAAGGAGGGCTGCTGTGAATtACACCATGAATTTCTGAATGTGATGTCCCTTCAATTCATGAG___GAATGA...GGAGAAAGGAATTTAGGGACCTTCACTGCTGCATTCTGGCTCACTCCCTCCAGCTCTACTTCCCTAGTTTTTGAAGTTGGGGAGCATTGACTACTTGAATTGTGATGCAGGAAGAGTAAGGGTGA	.	.	.
TALL077	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	18	32	4	188	80	medium	.	.	low_entropy(2),mismatches(4)	CCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAG...___G	.	.	.
TALL077	MYB	MYB(16847),MIR548A2(3140)	+/+	./+	6:135196000	6:135236020	splice-site	intergenic	deletion/read-through	downstream	upstream	7	15	1	1832	546	medium	.	.	duplicates(1),low_entropy(3)	CTTCTAGAATGAGTTTGCTCTGGAATTTTCTGATTCTTTGATGTTGCAAGGTGAAATAACTCATCAGTCAGCATCCACTCTAGCCTGAGATTTCACATCACTCCCTTAAGTCTGAAATAACATTC...TGGGCTGTGCGGCACCTCATGACCATATTGGCTACACCCATTGTATTTGCAGC?TCCAATCAGACCTTTGTCTTTATTTCCCTTACTTTGTAATTTCAGAGACACTATAATGATGAAGACC___CTGAAGAAAGCGCCTCGCCAGCAAGGTGCATGATCGTCCACCAGGGCACCATTCTGGATAATGTTAAGAACCTCTTAGAATTTGCAGAAACACTCCAATTTATAGATT|CTGACAGCCAGCAAGGAAGGGGTCCTCCGTCCTCACCAGCCACAGGATCTGAATTCTGTCAACAGCCTGAAGGAGGTCGAAAGCTGATTCTTCTTCTCAAGGACGTCCAGATAAGCGCGCCATCCAGCATCTGCCTCCATTTTGACCCTGTGAGACCCTAAGGACCCAGCCCTCTCCTAGCCTGTGGACCACATCCCTG	out-of-frame	wavrhlmtilatpivfaasnqtfvfisltl*fqrhyndedPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID|sdsqqgrgppsspatgsefcqqpeggrklilllkdvqisapssiclhfdpvrp*	.
TALL077	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	12	5	0	688	63	medium	.	.	low_entropy(2),mismappers(1),mismatches(4)	GCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCC	.	.	.
TALL077	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	4	2	209	180	medium	.	.	low_entropy(1),mismatches(4)	CAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGG	out-of-frame	KNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL077	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	5	1	3	209	29	medium	.	.	low_entropy(1),mismatches(1)	TTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAACTCCTTTGCAGCTACTGAAAGTTTAAAGTTTAAGTAAAAAAATGAATAGCTTTCTTCAG___CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTG	out-of-frame	FFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|wlyassssscs*	.
TALL077	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	0	224	180	low	.	.	low_entropy(1)	CTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATAC	out-of-frame	QLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL077	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	223	180	low	.	.	low_entropy(1)	ATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTT[t]GCTTGGGGACT...CGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCC	in-frame	FFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFclg	.
TALL077	AC092377.1(21633),LA16c-352F7.1(26688)	GSE1	./+	+/+	16:85463125	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	3	0	8	107	medium	.	.	mismappers(1)	CCCCGTGACGCCCCTACTGCTCGCCTCCGCCGCGGGCCATGCTGGGCAGCCCCTCCTAGAGGCCCCGGGTCCCGCGGCCCGGGGGGCGGCGCAGGATGCTGGGCATGAAGACCTGGTCGTCTCTGCTCCAGAACCTCA|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCG	.	.	.
TALL077	RFTN2	PLCL1	-/+	+/+	2:197640807	2:198083758	intron	splice-site	deletion/3'-3'	downstream	upstream	0	5	0	122	23	medium	.	.	.	CGGCCATCTTGGCTCCTCCCCCAGGAATGCTTATTTTTACACTCAGCACTTTTCCCATTGACATATCG|GATCCTTCAAACCAAAAATGTGGTGGAAGAAAGAAAACCGTGTCTTTCAGCAGCATGCCATCGGAAAAGAAAATTAGCAGTGCAAATGACTGCATCAGCTTCATGCAAGCTGGCTGTGAGTTGAAGAAAGTCCGGCCAAATTCTCGCATTTACAACCGTTTTTTCACTCTGGACACAGACCTTCAAGCTCTTCGCTGGGAACCTTCAAAGAAAGACCTCGAGAAA	.	.	.
TALL077	BCL11B	NKX2-5(8686),Y_RNA(10147)	-/-	./-	14:99271161	5:173244043	splice-site	intergenic	translocation	upstream	downstream	2	1	1	691	4494	medium	.	.	.	GCGGCtCGGCGGCGGCTCGGACCCCCTCCCCCGGCTCCCCCCATCAGTGCAGCTCTCCGGGCGATGCCAGAATAGATGCCGGGGCAATGTCCCGCCGCAAACAGGGCAACCCGCAGCACTTGTCCCAGAGGGAGCTCATCACCC|CTGTGACCTCCAGCGACGGGACTCCGAGGAACTGATTCCAGCGTCTCG...CCGAGGCAAACCCTAACACTAGTTTGAAAGCGGATCATATCCACTAATCCAGGACAAATTCGGGTTGGGAAACATACTCCCCAGAGCaTAAGAAAACTGACTTACAACAAAACAAAACTGACAAG	out-of-frame	MSRRKQGNPQHLSQRELIT|pvtssdgtprn*	.
TALL077	RP11-529E10.6(463),LRPAP1(1456)	LRPAP1	./.	-/.	4:3504920	4:3506447	intergenic	3'UTR	duplication	upstream	downstream	0	1	2	5	3	medium	.	.	.	.	.	.	.
TALL077	SLC35A3	RP4-714D9.5(2190),HIAT1(270)	+/+	./+	1:100017815	1:100037827	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	0	209	30	medium	.	.	.	GCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTAACAACTTTTTGAAACAAATTCCCTCATCTGCTGAAGAAGGGGGACAAAAACGGCCCCTATCGCCCAGAACCGTTGCGAGGATTTAGCTAGCTGGTGACGCCGGAGCACG	out-of-frame	LVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|*	.
TALL077	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	6	3	0	16	11	low	.	.	.	TTGG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACC	out-of-frame	GLFPEH*RLY*NA*LLLIQLEWKVFLLTA*SGL*SILQGFGLREALQIYLLRFRKVVLIC*FSP*|mirmllff*	.
TALL077	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	3	2	1	300	168	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	TTTCAACAGGAATGTCTAGAGACATTATTCCTGTTTTGCCACTGTATTTTTGGTGAATGTGTAGTAAGTAACTGGCCTCTTTAGTATCACAAAGCTGGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG___GTCACATTCACGCATATCAGATGGACAGATGTATCATTTTGGGGTCCACCATTC	.	.	.
TALL077	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	0	205	427	low	.	.	mismatches(1)	GGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAG	out-of-frame	VEINENLPARKT*RKPRKLARERGKRIA*LPLRESR|er*	.
TALL077	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	31	427	low	.	.	read_through(18)	CCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL077	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	3	2	0	342	25	low	.	.	low_entropy(2),mismatches(1)	GCGGTCGTGGCCAGGACTGGCGCAGCTGCCGTTTCAGGCGAGGGGCGCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwcc	.
TALL077	RGPD1	AC125232.1	+/+	-/+	2:86997758	2:87037303	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	0	5	0	243	40	low	.	.	low_entropy(1)	GCAAATTAAG___CTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|CCAACAGGACTTCTGCAGTATGTCTGTGAGCTGTCCCTTGATATACAAGGCCAATGCCAACCACTGCAGCCACTTGGACATTGTGAGGAACATCCAGCTCTGTGGACGTTGGGGGTAAGAGAGCAGGAATGCGAATGCTAAGAAGCCaAG	out-of-frame	QIKLLKSEIRRLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQ|anrtsavcl*	.
TALL077	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	1	3	0	57	10	low	.	.	.	GCCTGGCTCACTCTCCCTGCCCCGCCCCACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___TGTTTCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAGGACTGCAAGTATATCGTGGTGGAG	.	.	.
TALL077	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	4	0	50	7	low	.	.	.	CGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCC	.	.	.
TALL077	CDKAL1	SOX4	+/.	+/.	6:21170644	6:21596630	intron	3'UTR	deletion	downstream	upstream	0	0	4	1	1636	low	.	.	low_entropy(4),mismappers(1),mismatches(6)	.	.	.	.
TALL077	OR13A1(46836),ALOX5(11732)	OR13A1	./-	-/-	10:45362444	10:45307808	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	8	67	low	.	.	.	CTAGCAATCAGCAAGACTCCGTGGGCATAGGACCCTCCAAGCCAGGTGCGGGATATACTCTCCAGGTGCGCCGTTTTTTAAGCCCGTTGGAAAAGTGCAGTATTCAG|AAGCTTGAGTGCCCAAGGGTTTGATAAATGTGGAAAATAACCGCTGTTCGAATATCCTGTTGGCCTGCTGGTGAGATGTCATCGTGTTGTCTGAATGCA___CTCTGAAATCACATGAAGCTGTGGATGGAGAGTCACCTGATAGTCCCAGAAACCCGTCCCAGCCCAAGGATGATGA	.	.	.
TALL077	LINC01225(22284),RP11-73M7.1(8416)	TINAGL1	./+	+/+	1:31563169	1:31583149	intergenic	splice-site	deletion/read-through	downstream	upstream	2	1	0	126	31	low	.	.	.	CAGCCTCCCGAGTAGCTGGGGCTACAG___GTCTTTTGCTCCACGTGATATTGACTATGATCATCTGGAGGGTCCGTGGTTCCAGTGACTTAGCATCAAAGACGGCCTAACACACACGTCTGGTGC...GAAGGGCTTTATGACCAGTGTGTTGTGCTGACCTCCTGTCTCATCCTGTGACCAAGAATGCCTAACCTCCTAGGAATGCAGCCC|g|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___CTGGCAGGC	.	.	.
TALL077	RP11-286B14.1	EEF1A1P11	+/.	+/.	1:95715703	1:96448029	intron	exon	deletion	downstream	upstream	0	0	3	1	46	low	.	.	mismatches(4)	.	.	.	.
TALL077	EEF1A1P13	ANKH	-/-	-/-	5:14652891	5:14730252	exon	intron	deletion/read-through	downstream	upstream	0	0	3	445	0	low	.	.	mismappers(2),mismatches(12)	...AAACAACTAATTGTcGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTgACAACATGCTGGAGCCAAGTGCTAAC|...CCTTGCCGG	.	.	.
TALL077	ATP2B2	SEC13	-/-	-/-	3:10331300	3:10305561	intron	CDS	deletion/read-through	upstream	downstream	0	0	3	0	514	low	.	.	.	CCTGCAGCGC...|...GAA___GGAGGAGGAGGACGGCCAGTGGAAGGAGGAGCAGAAGCTAGAAGCGCACAGTGACTGGGTTCGAGATGTGGCCTGGGCCCCCTCCATCGGCCTGCCCACCAGCACCATCGCCAGCTGCTCCC	.	.	.
TALL077	EEF1A1P24	SLC25A38	+/+	+/+	3:39359905	3:39389495	exon	splice-site	deletion/read-through	downstream	upstream	0	3	0	12	351	low	.	.	.	CCGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTTGCCCAGAAAG|TTACATCCGGTGATCAAGGCTTTCCTGTGTGGCTCCATCAGTGGGACCTGCTCTACCCTCCTTTTCCAACCTCTGGATCTCCTTAAAACACGCCTGCAAACCCTCCAGCCCTCAGATCATGG___GTCTAGACGTGTTGGGATGTTGGCTGTACTCTTGAAGGTGGTTCGCACGGAGAGTCTTTTGGGCCTTTGGAAAGGGATGTCCCCT___TCCATTGTGAG	.	.	.
TALL077	C6orf183	C6orf183(11553),CCDC162P(2918)	+/+	./+	6:109270176	6:109282567	exon	intergenic	deletion/read-through	downstream	upstream	2	0	0	18	3	low	.	.	mismappers(2),mismatches(2)	GGCAGACCAGCCACCTCCTGTGTTTATAACCTCTCTGCTGGAGGACAGTGGTCGGGTAGACAG___ATATTCTCCTACTGCTCTTGTCTTAGCCATCTCTGAGGTGGATGATAACCAAATTGGCA...GCTGCATTCAGGAGTGGAAAATATGCAGGTGACTCTTGCATGCCAAGCTGCTCAGAAAAATGCTTTGATGGCGGCTGTCCAGCAGGTGTACTTCTATTGCACCCCTCAAGGGAGCTGTCCTGCTAATGTCAAG|GAAATAAGTTCAGATCTGAGAAATCATGGTGGAATGGGCCCAACCAGAAGAAGATATTCCAGAATTGTGAATGGCATAGACAGCTCGCTGATAGCCCCAACTCCAAA	.	.	.
TALL077	TRAK1	NKTR	+/+	+/+	3:42213972	3:42603026	intron	exon	deletion/read-through	downstream	upstream	0	0	2	8	3	low	.	.	low_entropy(1),mismappers(3),mismatches(1)	CCGTCAGAA...|...AAAAAAAAAAAAAAAGAAAAGAAAAGAAAAATAGTAGATTGCTGAAGAGTAGAAGTATGACCAAGCATGGTGGCTCATACCAGTAATCCCAGTACTTAGGGAGGCCCAGG	.	.	.
TALL077	PCSK7	DSCAML1	-/-	-/-	11:117229690	11:117499852	CDS	intron	deletion/read-through	downstream	upstream	0	0	2	359	3	low	.	.	mismappers(1),mismatches(1)	...CGAGCTGGGgTGTGCACCTaGAAAGCgTGGAAGGTGACGGGGAGGAAGAGACTCTGGAGCAGCAGGCGGATGCCTTGGCCCAGGCAGCAGGGCTGGTGAATGCTGG|...CCTGAAAAGGG	.	.	.
TALL077	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	1	0	47	1	low	.	.	mismappers(1)	TTGTGAATGCTTTAGATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAGGCAAGAAAATTCTGTCTGACCTTTCTGCCGGGAGGAGGGAATGTTTAG___GCATTTTCCCCCAATAAACTACTTATTCTCC	out-of-frame	VNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRTQQLASIVA|gctgesklfwrcpka*	.
TALL077	FCHSD2	NUMA1	-/-	-/-	11:72954202	11:72050905	intron	intron	deletion	upstream	downstream	0	0	2	1	1	low	.	.	mismappers(1),mismatches(1)	TGTGCCACTGCACTCCAGCCTGGGTGACAGAGcaAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAA...|...AAAAAAAAAAAAAAAAAAAAGGTGGGTATAGATCTGGTGCCATTTAGACATCTGCATTGTCC	.	.	.
TALL077	STIL	TAL1	-/-	-/-	1:47314036	1:47229351	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	6	9	low	.	.	.	GCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTCCTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCG|ATCGCCCAGGACCACACCGCAGCGTAACTGCAGGCCTCTCAGCGAAAAAGGGGGAAAGCAAAGACCCGGGTGTGCATC	.	.	.
TALL077	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511155	7:23339635	exon	intron	deletion	downstream	upstream	0	0	2	34729	0	low	.	.	mismappers(2),mismatches(11)	.	.	.	.
TALL077	CYFIP2	RNPC3	+/+	+/+	5:157325640	1:103555035	splice-site	splice-site	translocation	downstream	upstream	0	1	0	733	885	low	.	.	.	CGAGATGTCCATGCCCTGGATTCTAACGGACCATATCCTGGAAACCAAAGAACCTTCCATGATGGAGT|TTTTTTTGAATCCCGaGTCCTTCAAGTGCTTTgTAACTTTGAGAGGAAGAAAT...GGAATGACTAGGGACAACTAGACTTCAAGTGATCTTTCATCCCAG___GAATATAAATAGTTTCTGGAAAGGACACTGACAACTTCAAAGCAAAATGAAGTTCTTTCTGTTGCTTTTCACCATTGG	out-of-frame	EMSMPWILTDHILETKEPSMMe|fflnpesfkcfvtlrgr	.
TALL077	BCL11A	GNAS	-/-	+/+	2:60545971	20:58903528	splice-site	splice-site	translocation	upstream	upstream	1	0	0	163	3995	low	.	.	.	CGGAAACAATGCAATGGCAGCCTCTGCTTAGAAAAAGCTGTGGATAAGCCACCTTCCCCTTCACCAATCGAGATGAAAAAAGCATCCAATCCCGTGGAGGTTGGCATCCAGGTCACGCCAGAGGATGACGATTGTTTATCAACGTCATCTAGAGGAATTTGCCCCAAACAGGAACACATAGCAG|CAGTGAGAAGGCAACCAAAGTGCAGGACATCAAAAACAACCTGAAAGAG	out-of-frame	RKQCNGSLCLEKAVDKPPSPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIA|avrrqpkcrtsktt*	.
TALL077	BCL11A	GNAS	-/-	+/+	2:60553216	20:58895612	splice-site	splice-site	translocation	upstream	upstream	0	1	0	44	2706	low	.	.	.	TGTCTCGCCGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGAATTCTCGC|GTGCTGGAGAATCTGGTAAAAGCACCATTGTGAAGCAGATGAGGATCCTGCATGTTAATGGGTTTAATGGAGA___GGGCGGCGAAGAGGACCCGCAGGCTGCAAGGAGCAACAGCGATGG___TGAGAAGGCAACCAAAGTGCAGGACATCAAAAACAACCTGAAAGAGGCGATTGAA___ACCATTGTGGCCGCC	in-frame	SRRKQGKPQHLSKREFS|rAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVA	.
TALL077	RP11-473M20.9	CREBBP	-/-	-/-	16:3086891	16:3731937	splice-site	splice-site	duplication	upstream	downstream	1	0	0	585	139	low	.	.	.	CCCAGCCCCATCTTTATCTCACCGGCTGCTGCTGGCTGCCAAGCCTCCCCTGAATGGGGGAGGGTGGTCTGTGTGAGTCAGCGGAGGCACGgAGTGGAGGAAGACGGGAGCCTCTGCCgGGCCCGTTGAGCGTGGCCTCAGAAATG|GGCAGTCAGGGCGACAGCAAGAATGCCAAGAAGAAGAACAACAAGAAAACCAACAAGAACAAAAGCAGC	.	.	.
TALL077	HMGB2	C17orf62	-/-	-/-	4:173334272	17:82446696	splice-site	splice-site	translocation	upstream	downstream	0	1	0	1624	735	low	.	.	.	TTGGGTCCGGCCGCTCTGCGGGACTCTGAGGAAAAGCTCGCACCAG|ATAGCCTGGGCTGGAAGCTCTTCTACGTCACAGGCTGCCTGTTTGTGGCTGTGCAGAACTTGGAGGACTGGGAGG...GACGTTCAGCCTCTACAAGAAGCTGCTGACTCTTTTCAGAGCTGGCCACGACCAGG___TGGTGGTCCTGCTCCATGATGTCCGTtATGTGAGCGTGGAGGAGGAGAAGGTCCGGTACTTCGGGAAAG	.	.	.
TALL077	PTPRC	NEK7	+/+	+/+	1:198692373	1:198319412	splice-site	splice-site	duplication	downstream	upstream	0	1	0	808	371	low	.	.	.	CTTAAACTCTTGGCATTTGGCTTTGCCTTTCTGGACACAGAAGTATTTGTGACAG___GGCAAAGCCCAACACCTTCCCCCACTG|CTCCGACAGTTAGTTAATATGTGCATCAACCCAGATCCAG...AGTATTTTGTGCAAGTCgTACCTCCCCATTTATGTCTGGTGTTAAGATTAATATTTCAGAGCTAGTGTGCTTTGAATCCTTAACCAGTTTTCATATAAGCTTCATTTTGTACCAGTCACCTAAAT	out-of-frame	LKLLAFGFAFLDTEVFVTGQSPTPSPT|aptvs*	.
TALL077	RP11-305P22.9	DIDO1	+/+	-/-	20:63009473	20:62882414	splice-site	splice-site	inversion	downstream	downstream	0	1	0	159	49	low	.	.	.	GCCGTCTCCGCCATCGAGCGCCCCTCCGAGCTGGGGTTGGACGCTGCCAGTTTGCACAGCAGCAG|GTCTTGAGTCACCACGTCCGAATATAATTCTTGGGTTAGTAATCTGCCAAAAAATCAAACGTCCCGCAAACAGTGGAGAGTTAGACAAGATGGACGAAAAGCGGACCCGACTTCAACCGGAAGAAGCGGACGTTCCGGCCTATCCAAAAGTAGCCACAGTCCCGCAGTCGGAAA	.	.	.
TALL077	RP11-305P22.9	DIDO1	+/+	-/-	20:63009473	20:62896996	splice-site	splice-site	inversion	downstream	downstream	0	1	0	159	79	low	.	.	.	GGAACCTGCCGTCTCCGCCATCGAGCGCCCCTCCGAGCTGGGGTTGGACGCTGCCAGTTTGCACAGCAGCAG|CCACGAAGGAAGACAGGAGGTCCGAGGAGAAAGCGGCAGCCAcGGCAGC...GCACCTAGAAACCTCGTGCCAAAGAAGTCTTCTTTTGCTAATGTGGCAGCAGCCACACCAcCCATTAAAAAGCCACCCTCAGGTTTCAAGGGCACCATCCCCAAGAGGCCATGGCTCTCCGC	.	.	.
TALL078	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	53	102	22	425	230	high	.	.	duplicates(4),low_entropy(1),mismappers(3),mismatches(31)	CGCCGGCCCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTG	.	.	.
TALL078	ARCN1	ADAMTS8(9260),ADAMTS15(10721)	+/+	./-	11:118601551	11:130438253	3'UTR	intergenic	inversion	downstream	downstream	32	97	17	312	374	high	.	.	duplicates(3),inconsistently_clipped(8),mismappers(9),mismatches(4)	GCATGATCTCAGCTCACTGCAACCTCtGCCTtCTGGGTTCtAGCAtGTCTtCTGCCTCAGgCTCCGAGTAGCTGGGACTACAGGTGCACGCCACCACGCCTGGCTAATTTTTTGTATTTTAGTAGAGACGGGGTTTCACCGTGTTGCCCAGGCTGGTCGtGAACTCCTGAGCTCAGGCAATCCGCCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACCATGCCCAGCTGCTCCTTTATTTTAATCCCTAAATATAATCCCTAAATATAGTTATATTTCATACTTAGTTTGTTTTTAAAAAGTTTTCTCTGTAGAAAATTTTAATCATTCATACCCTTTACCTTTAGGTTTTTCTTTCTATACATTCAGTCAGGCACTGGGATCATCTGTTTACAGGCATTATATTTATTTGGCACTCC|CCCCGTGACCACCGCGTTCCTCCCTGCCGCCACTTCTTAGCTGAGGCTACTGCCATCTCCTGAAGTCATGTCCTGACAGGTCTCCATTATCCAATCTCTCCACTAATGCAATCCTGATTCTACACAATTGCTAGAGCTGTCTTTCCAAAGACAAATACGGTCATGTCACTTCCCTGAGTACAAGGCTTCAATGAACCTGCATTGCCCTCTGGGAGAAAGCCCAAAGTCCCCAGGGTGATGAATACCCCCCTTCACATACCGGCCCTGCTGACTGTCCCAGCTGCAAGTCCTGCCATGCCTCAGCAGCCCCTTACACCGCAGACTCAGGGAACTCCTCACTTTCTCAAACATGGCAGACTCTTTAATGTCTTCATGTTTGTGTGTCTGTGTGTGTGCGTGTCTGTGTGTGTGTCCGTGTGTGTGTTGGCGGGGGGCGGGTTTCTCCCTCTAGTGCCTGGTGAACTCCTACTCATTCATTAAAGTCCAACAAAAATATCACTCAAATGGAATCCTTCCCAACCTGCTGCCTGCCCATCAAAACACAGCTATCACTACTTTTT	.	.	.
TALL078	PHKB	RP11-676M6.1(225518),RP11-702B10.2(13255)	+/+	./+	16:47547548	11:128167172	splice-site	intergenic	translocation	downstream	upstream	48	50	17	594	268	high	.	.	duplicates(2),mismatches(17)	CGGGGGCGGCGGGACTCACGGCAGAAGTGAGCTGGAAGGTCTTGGAGCGAAGAGCTCGGACCAAGCGCTCAG___...TAAG___GTCCAGCAGTTTAAGCAGGATCCACGCCCAACAACATGTCTTCACTCTGTTTTCAATGTGCATACAGGAGATGAGTTGCTTTCCTATGAGGAATATGGTCATCTTCAG___ATAAATGCAGTGTCACTTTATCTCCTTTACCTTGTGGAAATGATTTCCTCAGGACTCCAGATTATCTACAACACTGATGAG___GTCTCTTTTATTCAAAACCTTGTATTTTGTGTGGAAAGAGTTTACCGTGTGCCTGACTTTGGTGTCTGGGAAAGAGGAAGCAAATATAATAATGGCAGCACAGAGCTACATTCGAG|GTCCTACTGGGTTAGTGTGATCTTCTGCGGAAGGCTGCAGCTGCTGTCAGGAGGCCCTCTGTCTACACTCCTCTCTGGAGAAGTGTAAGTGTTTTGTCAGGTAAATACTTCGTCACTCTCC...___GTCCCTTTTAAACTGAAGCATAGTGAGAACAAGTGTAAAGCACAACACAGACGGAAGATTGCACCTTAGCTCACTGCCCCGTGCACCCCGGTTACACCGTCTAAGAAAACACTCTGGATTCA...___...AA...___CTCCTGTGAATGATGCATGAAGCCGCTGACATTGCAACAGATGGCGCTTTG...___GTTTCCAGGAAGATTTGTTTACTGATCTTTCTTAAGGGATTTGATTTCCTGGATTGGCAGGTGTCATGTTGCTGGAGG	out-of-frame	KVQQFKQDPRPTTCLHSVFNVHTGDELLSYEEYGHLQINAVSLYLLYLVEMISSGLQIIYNTDEVSFIQNLVFCVERVYRVPDFGVWERGSKYNNGSTELHSr|sywvsvifcgrlqllsggplstllsgev*	.
TALL078	AL589822.1(30305),AGAP7P(15550)	MSMB	./-	-/-	10:46094071	10:46040091	intergenic	splice-site	deletion/read-through	upstream	downstream	22	54	7	134	145	high	.	.	duplicates(3),low_entropy(5),mismappers(1),mismatches(18)	GTCCTTCGTCACCTACTCCACGGACAGCAACACCGTCTTGCCGGCTCACCTCAGACAA___...CTGCCCTCAGGCAGAG___ACAACAAGGTTTCCAGCATGATTATTGCAATGACCAATGGAACAATGATGAAACATCCATTTTTGGACACTCTCAAAGAA___...TGAGGGGCTGGGGGCCTGGCTCACTCTCCCTGCCCCGCCCCACCCCTCCTGTGTTCCAGCTCACGTCAAAGACCTGTCTTGATGTGACATCGGTGGAGCCTTCCTCTGCGTGTGTAGGAG|AATGTTCTCCTGGGCAGCGTTGTGATCTTTGCCACCTTCGTGACTTTATGCAATGCATCATGCTATTTCATACCTAATGAGGGAGTTCCAGGAGATTCAACCAGGA___AATGCATGGATCTCAA...___TGTTTCTACACCTGTGGGTTATGACAAAGACAACTGCCAAAGAATCTTCAAGAAGGAGGACTGCAAGTATATCGTGGTGGAGAAGAAGGACCCAAAAAAGACCTGTTCTGTCAGTGAATGGATAATCTAATGTGCTTCTAGTAGGCACAGGGCTCCCAGGCCAGGCCTCATTCTCCTCTGGCCTCTAATAGTCAATGATTGTG	.	.	.
TALL078	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	4	75	0	183	121	high	.	.	duplicates(2),mismatches(6)	CAAACCCTGACTGTCAAATGCACTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCAC...CACCATCTCATCACCAGGAGTGACTCTGCCCATACgCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAAC	.	.	.
TALL078	ZNF445	LINC00694	-/-	-/-	3:44449513	3:44421813	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	84	121	low	.	.	duplicates(1),mismatches(1)	CCTGTACAGGGATGTGATGCTGGAGAATTATAGGAACATGGCTTCCCTGG___TGGGACCATTCACCAAACCTGCTCTGATCTCCTGGTTGGAAGCAAGGGAGCCATGGGGCCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCTGCTCCTACAG|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCC	out-of-frame	LYRDVMLENYRNMASLVGPFTKPALISWLEAREPWGLNMQAAQPKGNPVAAPT|gmsrgqfgqgqepldmffwvneisgeityppqkadapavspespqkk	.
TALL078	SNX13	SOSTDC1	-/-	-/+	7:17940284	7:16470620	splice-site	intron	inversion/5'-5'	upstream	upstream	12	22	8	110	76	high	.	.	duplicates(4),mismatches(3)	CGGCGCGTCCGTCGCGAGCGACCGGGCCGAGGGGAGGCCAGCGAAGCCGAGTAAAACCGCCGCCCGGGAGAAGACTGAAGGAGCAGTTGCCGCCGTTGGCGGCGGCCCGAGCAGTTTTCGCTGCTGCTACGGCTGTTGCCATGAGGCGAGGCTAGGGAGGACCTCACTTCCCCGGGGTGTAATAATGTTAACTGAG|GGGATGCGTCTGAATACAACAGTACCATTTATCTCCAGGGCATACGTTCCAACATCTCCAGTGAAAGCCTGAAACCAGTTCCAAACCTGACTGGCATCATTTGGAACACGTTTCTGTTCGTCTCTCCCATACAGAAATTTAATGCCTTTTCCATCCTAATTAAGCGCTTATCATGTACTGCGGCTGTAACTTGTGCAGTTTGAAGGGCCACAGCAAAACTAGCAGGAATTTTTTTCTTCTTTCATGGATCGAACGTTCTTTCTTACCATAGATCTTAGCAAACTCGGCATATGATTTTTTTTCTTTCTCTATTAAGTTGAAAACTTTCACCTTTTCACTTAAAGGAAACACTTTACGGCTTCTCTTTGGAAAACCCGAATTGCCAGCATCA	out-of-frame	MLTE|gmrlnttvpfisrayvptspvka*	.
TALL078	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	32	7	2	153	308	high	.	.	low_entropy(1),mismappers(27),mismatches(6)	ACCTTTAGTGACTGAGGTGTGGTTTAGGACTTCAAGGTTGGATGGCCCAGGCGGGAAACAGAGTGGAGAGCTCAGTAGGCCGTCTG...GGCCTCCCTGGAgCAGCCAACACAGACAGTGGTGATGCACCGCACTGAGCCCACTGCCCAGCAGAACCTGGCTCTGCAGCTGGCCGAGAAGCTGGGCAGCCTGGTGGAGAACAACGAACGGGTGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCGAG___ACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACATTCTCTTCTGCACAAGTTGCCTTTGT___GTGTCTTTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGA	out-of-frame	ASLeQPTQTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMRRGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTFNILFCTSCLCVSFLKTIFWSRNGHD	.
TALL078	PHKB	RP11-702B10.2	+/+	+/+	16:47547548	11:128167172	splice-site	5'UTR	translocation	downstream	upstream	1	23	14	594	268	high	.	.	mismatches(3)	GGGGCGGCGGGACTCACGGCAGAAGTGAGCTGGAAGGTCTTGGAGCGAAGAGCTCGGACCAAGCGCTCAG___...ATGAGGAATATGGTCATCTTCAG___ATAAATGCAGTGTCACTTTATCTCCTTTACCTTGTGGAAATGATTTCCTCAGGACTCCAGATTATCTACAACACTGATGAG___GTCTCTTTTATTCAAAACCTTGTATTTTGTGTGGAAAGAGTTTACCGTGTGCCTGACTTTGGTGTCTGGGAAAGAGGAAGCAAATATAATAATGGCAGCACAGAGCTACATTCGAG|GTCCTACTGGGTTAGTGTGATCTTCTGCGGAAGGCTGCAGCTGCTGTCAGGAGGCCCTCTGTCTACACTCCTCTCTGGAGAAGT___TTTGTCTCCATGAGGTCATACAGCTGCTTGAGGTTGCTCGGAGAGTAAGAAGCAGAATGAGAACTAGAACAGAAGCTCACTTTGGCCTGAAGGCTCATGTGCTGAGCATCTTCCCTTGTCTGTCTCCACCCCTAGCCTGGTGCCCAG...___TCCTAGATGCAATGGGATTAAACTTGGAGAAAATGGGATTAAAC	out-of-frame	EEYGHLQINAVSLYLLYLVEMISSGLQIIYNTDEVSFIQNLVFCVERVYRVPDFGVWERGSKYNNGSTELHSr|sywvsvifcgrlqllsggplstllsgevlsp*	.
TALL078	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	8	18	5	91	61	high	.	.	low_entropy(2),mismappers(1),mismatches(3)	CCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAG___...CTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCC	.	.	.
TALL078	ZCCHC14	NKAIN4	-/-	-/-	16:87414414	20:63250072	splice-site	splice-site	translocation	upstream	downstream	13	3	3	32	29	high	.	.	mismatches(1)	CTTTAAGCAGCTCTCCATGGAGAAG___TTTTTGAGCCTTACTGAAGAAGATCTGAATAAATTTGAGTCTCTTACCATGGGGGCAAAGAAGAAGCTCAAGACCCAGCTGGAGCTGGAAAA___GGAGAAGTCAGAGAGACGGTGCCTGAACCCCTCGGCCCCGCCGCTGGTCACCAGCAGTGGTGTGGCTCGAGTGCCCCCCACCAGCCACGTCGGGCCCGTGCAGTCGGGGCGGGGCAGCCATGCAGCAG|GTCGCCGCCCTGGAGAGGCAGGTGTTTGACTTCCTGGGCTACCAGTGGGCGCCCATCCTGGCCAACTTTGTCCACATCATCATCGTCATCCTGGGACTCTTCGGCACCATCCAGTACCGGCTGCGCTAcGTCATGGTG___TACACGCTGTGGGCAGCCGTCTGGGTCACCTGGAACGTCTTCATCATCTGCTTCTACCTGGAAGTCGGTGGCCTCTTAAAG___GACAGCGAGCTACTGACCTTCA...GGGCCTCGGGGCCCCCCATGGCCAGGaCCTGGTGTCAGGTGCTGGCTGTGCCCTGGAGCCCAGCTATGTGGAGGCCCTACACAGTTGCCTGCAGATCCTGATCGCG___CTTCTGGGCTTTGTCTGTGGCTGCCAGGTGGTCAGCGTGTTTACGGAGGAAGAGGACAGCT___TTGATTTCAT	out-of-frame	FKQLSMEKFLSLTEEDLNKFESLTMGAKKKLKTQLELEKEKSERRCLNPSAPPLVTSSGVARVPPTSHVGPVQSGRGSHAA|grrpgeagv*	.
TALL078	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	7	9	2	132	22	high	.	.	low_entropy(1),mismatches(1)	CTTTCAGAGTTGTATCC___TAAACAAATCCGAGCTATGCTGGGCCAtTTCAGCCAGGCAGAAGCCTTATTAATGAAAGCTGGAGTGCAGCCAGGAACTTTTGATGGAGTTCTTATGGATCTTGGGT...TGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___GTACCCTGACATGCCCACTGCTGCTGATGTTGTGAATGCTTTAGATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GAAAA...GTTCTTCGGAAAAAGATCTAAAAGCATCACCTTTTGCTTTGTCTGCTGGTGCTTAAG___TCACAGGCTAGCTAGCCTGTGACTACTTTGACCTATAGAATACAGTGcAAATGACGCTTCAGTTCTAG	out-of-frame	DTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRTQQLASIVA|gctgesklfwrcpka*	.
TALL078	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28361937	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	132	14	low	.	.	.	TGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCA...CGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GAAAACAAACAACCTGATTTTAAAATGGCCAAAGGACCTGAAC	out-of-frame	RFSNCSGTQHLPHHQNPAACQHRCr|hfppinylfsqlhlsvsfledpnnvdglqrkmeenkqpdfkmakgpe	.
TALL078	ST6GALNAC4	RP11-203J24.8	-/+	+/+	9:127916161	9:127940395	exon	splice-site	deletion/read-through/3'-3'	downstream	upstream	7	8	1	177	58	high	.	.	mismatches(3)	CTGCTCCCCTGCCCATGAGGAACCAGAGACCTTGACTCAGGCAGTCGAGATGAACTGCCCCCCACATCCAGCTCTCTCTCTCACAGCCCGGGGCTTCTGCAGTAAAGACAAGAGCGGCTGAACTGAACTTCACAACCCCAGTTCCACGTAGGCTTTGCCTG|TTTTCTCCCCAGGAATCTGGAACGATGAAGGTGATGATTGTGCCTGTGGCCAAGACCGGGAGAACCCTGGATCCCTACACCTTCCCCACCCCTGGAATGTCACTATACATATCTGACTTCTTCTGATGTTGCCTTTGACCCTAAAGTCAATATGATAAAGTAACAAG___AAGCTGGGACAGAGGAACAAACACAGCCCACTCAAGCAGTGGTGGCAACATTCTGTTAGAAAGGAGGGGAGTCAAAGAAAAAAACACCCCTCCGCCCATCTCCTTATCACCTCCCTAAAGAC	.	.	.
TALL078	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121455	splice-site	splice-site	deletion/read-through	upstream	downstream	9	1	4	52	45	high	.	.	mismatches(1)	GTGCCCTTTGGGGAAGTAAGCATGGTCCGGGACTGGTTGGGCATTGTGtGGCCTGTGCTGACCCCTCCCCAAGAGCATCCTAAACGACCAGTGCTGGGACTGGAGTGCCCACAGTCAGAA___...GAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|CTGGGCAGATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCTGTCTGGAACCGCTTCCTCCCAGACTAA___G	.	.	.
TALL078	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54121447	splice-site	splice-site	deletion/read-through	upstream	downstream	3	7	3	52	45	high	.	.	duplicates(1),mismappers(13),mismatches(2)	CCAG___...AAACGACCAGTGCTGGGACTGGAGTGCCCACAGTCAGAA___AAAATTCTTGCTGCTGTATTGAGAACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|ATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCTGTCTGGAACCGCTTCCTCCCAGACTAAGTGAGA...___G	out-of-frame	KRPVLGLECPQSEkilaavlrtd*enkgrsretsqeliavsgwsgtpglklssclglpkcwnyrhgplhlaicvly|dvpetgltrqlkrhp*	.
TALL078	SMUG1	RP11-834C11.5	-/-	-/-	12:54172025	12:54121455	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	2	48	45	low	.	.	mismatches(1)	CCAG___...GTCAGAA___AAAATTCTTGCTGCTGTATTGAGAACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG|CTGGGCAGATGTGCCTGAGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCTGTCTGGAACCGCTTCCTCCCAGACTAA___G	out-of-frame	SEkilaavlrtd*enkgrsretsqeliavs|agqmclrqv*	.
TALL078	SMUG1	RP11-834C11.5	-/-	-/-	12:54165374	12:54085407	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	52	4	low	.	.	mismatches(2)	CTGGACCAG___AAAATTCTTGCTGCTGTATTGAGAACAGATTGAGAAAACAAGGGCAGAAGCAGGGAGACCAGTCAGGAGCTGATTGCAGTATCAG___GCTGGTCTGGAACTCCTGGGCTGAAGCTATCCTCTTGCCTTGGCCTCCCTAAATGTTGGAATTACAGACATGGGCCACTACACCTGGCGATCTGTGTCTTATACG|GTACAGCTGTTGGGAGCTGCCTCTCCTGCCCTCAATCTCCCTGCCTGTAGTTCCAGAGGGAAGAAGAGGGGGAAAAAAGGATGAAGAGAATTgTTTCAGTGCTGGGGGAG___CGGAAACCAGACGACC	.	.	.
TALL078	NFRKB	NFRKB	-/-	-/+	11:129884070	11:129871485	splice-site	intron	inversion/5'-5'	upstream	upstream	6	5	1	857	80	high	.	.	.	AGGAGTGTGGTGACACAGCCCTGTCATCTGATGAAGAGG___CCACGTTGGATTTACAAGAACAATTTTCTTTTGAAGATCTCAGCTCATGGCTTCCGAGCTCTCCAGCACGTTCTCCTAGTCCTGCGGTGCCCCTGCGGGTGGTGCCCACACTTTCAACCACGGATATGAAAACTGCAG___ATAAAGTAGAACTGGGGGACAGTGACCTGAAGATAATGTTAAAGAAGCACCACGAGAAGCGGAAACATCAGCCA|TCTCCACACCTCAATTTTCTTCTACCTCAATAAATGATGCCACCATCTAACCAAGCGCCCAAGCCAAAGCCATGGATGGG___ACCACTCAGCACAGAGAAGTGCCTGTGAATTTCAAGAAGAAACCAACACTGGATTTCTCTCTTTTCACCATCACCAGG	out-of-frame	ECGDTALSSDEEATLDLQEQFSFEDLSSWLPSSPARSPSPAVPLRVVPTLSTTDMKTADKVELGDSDLKIMLKKHHEKRKHQP|sphlnfllpq*	.
TALL078	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	4	6	0	17	10	high	.	.	low_entropy(1)	GGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCGTGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGC...CTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAG...GCCCGAGTGGGCTGAATCCCATGGGTTCAAAGCTCACGTTGGTGCTGGCCCTGGGAGTCATGAGCAGAGACGGTGGGACAGACGGGGATGCGTGCACATGTGTGTGCATGGGTGCATACGTG	out-of-frame	FCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL078	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482895	17:4483875	intron	intron	duplication	upstream	downstream	2	3	2	69	81	high	.	.	.	.	.	.	.
TALL078	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	15	18	2	596	1496	medium	.	.	low_entropy(2),mismatches(1)	GCGGCTGTTGTCGGGCCTCCAGCGGGCGGGGCCGTTGGCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL078	SERF1B	SMN2	+/+	+/+	5:70026515	5:70065965	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	596	1121	low	.	.	.	GGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQs|ml*	.
TALL078	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	45	1496	low	.	.	duplicates(1),read_through(41)	GCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTG...___AATGAAAATGAAAGCCA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL078	TMSB10	AC022210.2(17458),KCMF1(36975)	+/+	./+	2:84906668	2:84934118	3'UTR	intergenic	deletion/read-through	downstream	upstream	34	0	1	3464	21	medium	.	.	duplicates(61),low_entropy(179),mismatches(39)	AAGACAAAAAAAAAAA...CGCGAGTGGGAGCACCAGGATCTCGGGCTCGGAACGAGACTGCACG___GATTGTTTTAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCAGCTTCGATAAGGCCAAGCTGAAGAAAACGGAGACGCAGGAGAAGAACACCCTGCCGACCAAAGAGA___CCATTGAGCAGGAGAAGCGGAGTGAAATTTCCTAAGATCCTGGAGGATTTCCTACCCCCGTCCTCTTCGAGACCCCAGTCGTGATGTGGAGGAAGAGCCACCTGCAAGATGGACACGAGCCACAAGCTGCACTGTGAACCTGGGCACTCCGCGCCGATGCCACCGGCCTGTGGGTCTCTGAAGGGACCCCCCCCCAATCGGACTGCCAAATTCTCCGGTTTGCCCCGGGATATTATAGAAAATTATTTGTATGAATAATGAAAATAAAACACACCTCGTG|GCAAAAAAAAAAAAAAA...AAAAAcaAAAccAgTgGAAAAAAAAAAAAAAAAAAAAA...AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	out-of-frame	MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS*dpggfptpvlfetpvvmwrkshlqdghepqaal*twalradatglwvsegtppqsdcqilrfapgyyrklfv*imkikhtsw|qkkkk	.
TALL078	TMEM45B	NFRKB	+/+	-/-	11:129860038	11:129880945	3'UTR	intron	inversion	downstream	downstream	22	10	0	172	68	medium	.	.	.	CCACTTTGCAACAGCACTGAAATGGCTGTAAGGACTCCTGAGATATGTGTCCAGCAAGGAGTTTACAGTCAAACAGGAGAGACATGCCTGTAGTTACATCCAGTGTGATGGGTGCTGAGAGGCAAGTACAAACCACGATGAGAAAAAGGAGAGGAGGGGAAATGCAGAGCTTGCC|CTGGTGATGGTGAAAAGAGAGAAATCCAGTGTTGGTTTCTTCTTGAAATTCACAGGCACTTCTCTGTGCTGAGTGGT___CCCATCCATGGCTTTGGCTTGGGCGCTTGGTTAGATGGTGGCATCATTTATTGAGGTAGAAGAAAATTGAGGTGTGGAGA???C	.	.	.
TALL078	RNU1-80P(39010),TNRC6C(44900)	TNRC6C	./+	+/+	17:77959268	17:78004170	intergenic	5'UTR	deletion/read-through	downstream	upstream	6	23	0	36	98	medium	.	.	low_entropy(2),mismappers(1),mismatches(7)	CCGCGCACTCCCGAGGCCCTtGGGCGGTTGTTCGTGCCGCCGCCGCCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GGAGAAAGAGCAAGAAACACAAGAAGAGGAACGTTTGATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAG___GCTGCTGATCAAAAAACCAAAG___TGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTACCAGTACTTCCACCAGCACTATCTCAAGCAGCAACAATGGCAAACGTGCATCTGCCAGTGGCCAGCAGCCAGCTGCATCCCGTTACCTGCCTCGTGAGGTGCCTCCACG...ACCTGGAGCCGGAACACAGCATCATCCCAGTAAGCTCCAACCAG___ATCTCAGTCATAGTGGATTGGCAGATCATTATGAAAATTCCCACTGGGGACAGCAGCCTACTTACAGAAGCGAAGCCAA	.	.	.
TALL078	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	6	11	1	321	779	medium	.	.	mismatches(4)	CATCAGGTTGGTCCACATCCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___G	.	.	.
TALL078	CD82	RP11-244C20.2(5802),RP11-45A12.1(32141)	+/+	./+	11:44615373	11:44662722	splice-site	intergenic	deletion/read-through	downstream	upstream	7	6	2	3616	33	medium	.	.	mismatches(3)	GCTGCATCGGCGCCGTCAACGAGGTCCGCTGCCTGCTGGGGCTG___TACTTTGCTTTCCTGCTCCTGATCCTCATTGCCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGCAAG___CTGAAGCAGGA?ATGGGCGGCATCGTGACTGAGCTCATTCGAGACTACAACAGCAGTCGCGAGGACAGCCTGCAGGATGCCTGGGACTACGTGCAGGCTCAG|ACCAGGCTCCTAGATGTTGGGGACTGAACCCTGGCTCCGTTCCACCTGGCTTGTCACTACGTTGTCATTCACAAACGGTGAGCTAATCACAGAAGCAACCTGT...___ATGCACCCAAAAAATAAACAACAATACAAGTAATTTGAACAAAGCAAGCTCCCTTAGCC	out-of-frame	CIGAVNEVRCLLGLYFAFLLLILIAQVTAGALFYFNMGKLKQ?MGGIVTELIRDYNSSREDSLQDAWDYVQAQ|trlldvgd*	.
TALL078	C5orf56	IRF1	+/+	-/+	5:132449689	5:132486192	splice-site	exon	deletion/read-through/5'-5'	downstream	upstream	7	7	0	698	65	medium	.	.	mismatches(1)	CAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|GAAGCCCTTCACAGGACCCAGACAGTCAAGCAGGCAGGCCAGGCCCCAGGAGCACCAACCTTCAGAGGTGGAGGGCATGGGTGACACCTGGAAGTTGTACAGATCACTGGTGCTGTCCGGCACAACTTCCACTGGGATGTGCCAGTCGGGGAGAGTGCTGCTGACAGCACATGGCGACAGTGCTGGGGAACAGCAGAAGCCACAGGTCAAGGTTGTGTGCTTTCTTAGTTTGCAAGACATCGAGCGCCCTCCGACCAACCCTGCAGCCTGCACTAATGGGCCACCATGTGCCAGCACCATGCCTCCAAGAGAAAGAGTCATCCCACTGACCTGTGGGGTCTCCTGCCAGACCTGGACCAGCTCACCTGGAGTCAGGGCCTGCTCCACCTCCAAGTCCTGCATGTAGCCTGGAACTGTGTAGCTGCTGT	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|gspsqdpdsqagrpgprstnlqrwrawvtpgsctdhwccpaqlplgcasrgecc*	.
TALL078	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	3	7	3	134	517	medium	.	.	mismatches(8)	GTGGCAGTCTATAACTGA___AAATGTGGTAAAGTACTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG	.	.	.
TALL078	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528417	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	2	308	517	low	.	.	.	CCATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTcGGCAACTGCTTTAAACCCGATAGAACAAGATCAGcAGTGGCAGTCTATAACTGA___AAATGTGGTAAAGTACTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGA	.	.	.
TALL078	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528951	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	1	170	517	low	.	.	.	GTCAAAAGAAAAAATAG___ACATGAAAAAACTGCTTCGTAACATGTGAAGTCCAGATCCAAGGGAACCTCAGAAATCCATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCAT...CCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGA	.	.	.
TALL078	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	7	6	0	727	22	medium	.	.	mismappers(1),mismatches(5)	CCTGCGCTGCCTGCTTGCCTACTTCCTGGATAAGAGTGCAG___AGGAGATGCCCTACCTGAAATGCCCTCTTCACACCGTCCTGAAACTGACGCCTGTCGCTTATG___GCTGCCGTGTGGAATCCATCTACCTGAACGTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAGTTAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAGACCAATTAACCTGAGCTGCTGAGGACTCTGAGAAGCTTCCCTTATGCTGTGGTTtTGTGGGATTTCCCAGGTCAGTGTCAGTTGTGTAAAATACAGAGGTCTCCAATGGATGATGGGTAGTTTATGACACTTCCACTTTACAATGATGCAAGAGAGATACGCATTTTGTAGAAGTGGAAATAGTGCTTCGAGTTCCCATACAACCATTCTGTTTTTC	out-of-frame	LRCLLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVESVCTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|elksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
TALL078	C5orf56	RAD50	+/+	+/+	5:132449689	5:132556332	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	5	4	698	18	medium	.	.	low_entropy(1)	CCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ATATCTATTGCTGGGAGCACTGATCGGAATGGATTACCTCTACATTCTTCATATTTGCAGACTGCTTTTAGTTTTAGTTCCCAGACTTTTGGTCTTAAAGACGCCTTTACACTAAAAAATTACGGGGGACCTCAAAGAGCGT___ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAA	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|diycweh*	.
TALL078	C5orf56	RAD50	+/+	+/+	5:132449689	5:132559284	splice-site	splice-site	deletion/read-through	downstream	upstream	4	2	3	698	129	medium	.	.	low_entropy(1)	CGCAGCTGCCGTTTCAGGCGAGGGGCGCAGAATGCAGCGGCCGCCAGCCTGGAGCGCGGGCCCTGGGGCCGCAACCCGCGCCGGGCGAG___GTGGCAGCACACCCTGGGCCCCCCACTCCCCGCCGCAAGTCCTGAGGATGGCCAGCAGAGAAACAAGAAAATGGACTCCCTGGCTGCTGGAGAGTTGAATGCCAGCCACCAGCCATGG___GTGCCAGAGTTTGTAGCCTATTGGAGGAAAACACACCAAG|ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG___GTTGCTCAAGAAACAGATGTGAGAGCCCAGATTCGTCTGCAATTTCGTGATGTCAATGGAGAACTTATAGCTGTGCAAAGATCTATGGTGTG	out-of-frame	MDSLAAGELNASHQPWVPEFVAYWRKTHQ|dhh*	.
TALL078	PXDN(28539),MYT1L(15722)	PXDN	./-	-/-	2:1773391	2:1693134	intergenic	splice-site	deletion/read-through	upstream	downstream	2	8	2	295	403	medium	.	.	low_entropy(2),mismatches(3)	TGAGAGAGGAGAATGAGAGACCACAGCCTAGCGTCAGAGCCTTTCAGCATCCTGCAACTCAAAGAACACCACAGCCAAGGCGTGTACCTTGGGGTATCATGCTCTGAGCCCCAACATCTGCAAAG___...AACATCAGAGGCTTTAAGTGTCTGCCACTGGGCTAGAAG___AAGTATGTTCCTGGTCCTAGCAGCAACAAAGACAACGAAGAAGCTGATGGGTTGGCCTC?GAAGGATCTAGAGCATCAG|AGATCTTCGCTTTAACAGAATCAGAGAGATCCAACCTGGGGCATTCAGGCGGCTGAGGAACTTGAACACATT___GCTTCTCAATAATAATCAGATCAAGAGGATACCTAGTGGAGCATTTGAAGACTTGGAAAATTTAAAATATCT___CTATCTGTACAAGAATGAGATCCAGTCAATTGACAGGCAAGCATTTAAGGGACTTGCCTCTCTAGAGCAACT___ATACCTGCACTTTAATCAGATAGAAACTTTGGACCCAGATTCGTTCCAGC	.	.	.
TALL078	LATS2(16772),RPS12P23(15999)	SAP18	./+	+/+	13:21078319	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	7	3	1	47	7479	medium	.	.	low_entropy(2),mismatches(5)	CGCGAGCTGGCGCTTTCCGTGCGAGCCCAGCATCAGGCGGAGGCCCAGGGCCAACCGGACTCTGAACAAAGGGAGCCGACAAATGAGAAAGCAAAGGTACCTCAGAGACTACGAAGCCCTTCAGATGGAAATGGTCATCTCCCAACAGCCTCTCTGGACCtCTGCCTGCAAGCCCGGCCCACACATCTTGGACCCAGGCTGGAGACACAGACAGCCAGGTGgTGATGCCCACGCGCAGCTCCAAGACCCCGGGGAGCCTCCGCCAGGCCGGAACCTGCGCCAGGCTTCTCTGGAACCTTCTCTCCAGGACGCTCTTCTGCGGTTACTGAAAAAGGGAGTCTACATGAATTAATAAGTGAAG|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTTGCAGATCTACACTTG___GATGGATGCAACtTTGAAAGAACTGACAAGCTTAGTAAAAGAAGTCTACCCAGAAGCTAGAAAGAAGGGCAC...AGTTAAGGAGATTGGCAGCACCATGTCTGGCAGAAAGGGGACTGATGATTCCATGACCCTGCAGTCGCAGAAGTTCCAGATAGGAGATTACTTGGACATAGCAATTACCCCTCCAAATCGGGCA	.	.	.
TALL078	ITM2C	PTMA	+/+	+/+	2:230865145	2:231711348	splice-site	splice-site	deletion	downstream	upstream	6	4	1	4502	50433	medium	.	.	low_entropy(1),mismappers(1),mismatches(16)	AGGCTGCACCGGCAGAGGCTGCGGGGCGGACGCGCGGGCCGGCGCAGCCATGGTGAAGATTAGCTTCCAGCCCGCCGTGGCTGGCATCAAGGGCGACAAGGCTGACAAGGCGTCGGCGTCGGCCCCTGCGCCGGCCTCGGCCACCGAGATCCTGCTGACGCCGGCTAGG|GACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCT___AATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATG___GTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAG___GATGACGATGTCGATACCAAGAAG...AAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATCTAAACGTGGTCACCTTCGAGTAGAGAGGCCCGCCCGCCCACCGTGGGCAGTGCCACCCGCAGATGACACGaGC	in-frame	MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR|DLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTK	.
TALL078	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	7	2	1	125	21	medium	.	.	mismatches(3)	CGCCtGCACCAGGGCTTGGtCTGGtTCTTcCTCAGTgCATcGTGCCCAGCCTCTGCCCCAACATGCCCTCTGCATGTGACCGTCATGCCCTGGATGGAGCCACTCCTGGCTCACCCCACCTGCACTGCACTGTCCCCAGAGAGCCACCCCTCCACCCACTCAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTCTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAGAATCACCTAGCTGAGCCCAGCCAAACTGCAGCATATAGTATCATGAGCTAATAAACAATTCCTGCTTTAA	.	.	.
TALL078	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	6	4	0	733	43	medium	.	.	low_entropy(2),mismatches(3)	CTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAG	.	.	.
TALL078	NEU4(26920),AC114730.2(47)	RTP5	./+	+/+	2:241844333	2:241871714	intergenic	splice-site	deletion/read-through	downstream	upstream	3	4	1	52	807	medium	.	.	.	CCCGGCCACACCCAGGGCGCTCCTGAAGCCGCCGCAGCTGCTGTGCGAGGCCGGGCCGACCCGCCTGGGGCGCGTGGGTGGGGCGGGAGCGCAGCCGCAGCCCGGCGGCGACACAGGCCCGGGGCCAGCCGGGGACGGAAAAA|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTG...GACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCTGGTCTTGCACATCCTGCAGGACTGCTACGGGGATGGCCCCGGCCCAGCCCGGCACCCCAGGGAGGCCTATGAGGGCTGCTGTGAGGCCTGTGAGCTGGGGGTCTGCTTCCTCCAGAAGGCCCCAGACCCCGCCTGGAGCGCCAACGCCACAAAAGGCAACTTCCCC	.	.	.
TALL078	AC114730.2	RTP5	+/+	+/+	2:241844478	2:241871714	splice-site	splice-site	deletion/read-through	downstream	upstream	3	4	1	99	807	medium	.	.	.	CGCGTGGGTGGGGCGGGAGCGCAGCCGCAGCCCGGCGGCGACACAGGCCCGGGGCCAGCCGGGGACGGAAAAAGTGAGTGCGCGGCGGCGCGGGGCGGCCTGACGGGAAGGCGGGAGGCGAAGTGCTGACTGCGCCGCGGTCTCTCAGCCGCCAACACACCGCGGACGCCCGGGGACAGCGACCGCTTCCTCCCTCCCCGCCCGCCTTGTCTCTTTTT|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGTGCAGGCTGTGCCCCGCACCCGaGGACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCTGGTCTTGCACATCCTGCAGGACTGCTACGGGaATGGCCCCGGCCCAGCCCGGCA	.	.	.
TALL078	SNX13	ISPD(39838),SOSTDC1(321)	-/-	./+	7:17940284	7:16461160	splice-site	intergenic	inversion	upstream	upstream	5	0	0	110	6	medium	.	.	.	GCCGAGGGGAGGCCAGCGAAGCCGAGTAAAACCGCCGCCCGGGAGAAGACTGAAGGAGCAGTTGCCGCCGTTGGCGGCGGCCCGAGCAGTTTTCGCTGCTGCTACGGCTGTTGCCATGAGGCGAGGCTAGGGAGGACCTCACTTCCCCGGGGTGTAATAATGTTAACTGAG|CTGTACATTGAGATCATCTGGAAAACTTTAAAACCTGCTGATATTTGAGCTCTACCCCAAGAAATTCTGATGTAATGTGGATGAAAACCTGGGCATTGG	out-of-frame	MLTE|lyieiiwktlkpadi*	.
TALL078	RP11-460N20.4(2926),RP11-460N20.5(2397)	RP11-479O9.2	./.	+/.	7:65081706	7:65773650	intergenic	exon	deletion	downstream	upstream	4	1	0	15	15	medium	.	.	mismappers(1)	.	.	.	.
TALL078	RMND5A	AC093616.4	+/+	+/+	2:86741069	2:87716612	splice-site	splice-site	deletion	downstream	upstream	1	0	4	714	38	medium	.	.	.	AGATCCTGCAGAGCCACG___GCCAAGATGCTGAATTATCAGGGACACTTTCACTTGTTTTGACACAGTGCTGTAAAAGAATAAAGGATACTGTTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGTGTTTCTCGGGTTGGAAAAGCCATTGATAAG|GATTCACTTTAA...GGACGTCAGGATCTTTCCAAGCAGGCCTGCGAAGGAAACTTACCCAAAGGGAAGTCT___...GATGTTCCTTCAGGaACAGAAACTGAGGAGGAAGATGACGGCATGAATGACATGAATC...___ATTGCTCCAATTGTGTCAGCGAACTATGGCTCTTCCTGTAGGACGAGGAATGTTTACCTTGTTTTCGTACCATCCTGTTCCAA	out-of-frame	ILQSHGQDAELSGTLSLVLTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDK|dsl	.
TALL078	NFRKB	AP000479.1	-/+	+/+	11:129880945	11:56862182	intron	intron	duplication/3'-3'	downstream	upstream	0	2	2	68	6	medium	.	.	.	CCATCTAACCAAGCGCCCAAGCCAAAGCCATGGATGGG___ACCACTCAGCACAGAGAAGTGCCTGTGAATTTCAAGAAGAAACCAACACTGGATTTCTCTCTTTTCACCATCACCAG|GAGGAGACTGATTGCCTGAAGATGATCTGGTAGCAGCCAGGCTCCTGGCCCCATTCTGAAGAACTTGACATAGCTGGAAAATCAGACATGGCTGGAAGAAACTTCAGATATATTGTTTCTTAACTTGGCATCTCAACAACTCTAAGAAAAAATCCATTTTTATTTAAATTGTAAAAATAATGTGTCTATTAAGATTACCACCCTTGTTATCA	.	.	.
TALL078	IRF1	AC116366.6	-/-	-/-	5:132486557	5:132470167	splice-site	exon	deletion/read-through	upstream	downstream	1	3	0	1246	208	medium	.	.	low_entropy(1)	GGGATTCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCTCCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGGCTACATGCAGGACTTGGAGGTGGAGCAGGCCCTGACTCCAG|GCTCCTCAATCTGCAGTAACAGCTGTGGTTCAGCAAGCAGTGCGGCACTCTGGAGTGCTGTTCTGAAACAGGGCCGGCGTGGGGCAGAGCTCATCTGCTGCCCTATCCATTCACTGTGCTGTTCGGGGCTAGAGAAGATTCATGTGTGTATATGCTTTTTAAAAATTG	out-of-frame	DSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALTP|gssicsnscgsassaalwsavlkqgrrgaeliccpihslccsglekihvcicflki	.
TALL078	IRF1	AC116366.6	-/-	-/-	5:132484362	5:132472178	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	943	100	low	.	.	read_through(1)	AGCCAGAAATTGACAGCCCAGGGG|CTCTTTGCCCAGCTTCCAGTGACTCCTCTGTGCCTGGAGAGAAGGGCAAGCGCCTTACTCATGCCTTGAGGTTGCTGACCACTTCCGTCACCAGCCTCGCTCCTTCCAGACCTGCCCTGGGAGTCCCTGCC	out-of-frame	PEIDSPG|alcpassdssvpgekgkrlthalrllttsvtslapsrpalgvp	.
TALL078	IRF1	AC116366.6	-/-	-/-	5:132485667	5:132472178	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	1013	100	low	.	.	read_through(5)	CAGGCCCTGACTCCAG___CACTGTCGCCATGTGCTGTCAGCAGCACTCTCCCCGACTGGCACATCCCAGTGGAAGTTGTGCCGGACAGCACCAGTGATCTGTACAACTTCCAGGTGTCACCCATGCC...___CTACAACAGATGAGGATGAGGAAGGGAAATTACCTGAGGACATCATGAAG|CTCTTTGCCCAGCTTCCAGTGACTCCTCTGTGCCTGGAGAGAAGGGCAAGCGCCTTACTCATGCCTTGAGGTTGCTGACCACTTCCGTCACCAGCCTCGCTCCTTCCAGACCTGCCCTGGGAGTCCCTGCCTCCTGGCCTTCACCTGCATCACGGTCTGCACTTCTCAGAGCCCTGCCCTTCCTTGAAGAACAAAGCCTGGCCAAATTGTGTCAGCCTTCTGGCCTGCAGTGACCCCTGCTTACATCGTACATAACAATAGCTATAACTTATTGACATTAACTTCA	out-of-frame	LQQMRMRKGNYLRTS*s|slpsfq*	.
TALL078	IRF1	AC116366.6	-/-	-/-	5:132486557	5:132472178	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	1246	100	low	.	.	read_through(14)	GGAAAAGGAGCCAGATCCCAAGACGTGGAAGGCCAACTTTCGCTGTGCCATGAACTCCCTGCCAGATATCGAGGAGGTGAAAGACCAGAGCAGGAACAAGGGCAGCTCAGCTGTGCGAGTGTACCGGATGCTTCCACCTCTCACCAAGAACCAGAGA...ATGCTAAGAGCAAGGCCAAGAGGAAG___TCATGTGGGGATTCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCTCCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGGCTACATGCAGGACTTGGAGGTGGAGCAGGCCCTGACTCCAG|CTCTTTGCCCAGCTTCCAGTGACTCCTCTGTGCCTGGAGAGAAGGGCAAGCGCCTTACTCATGCCTTGAGGTTGCTGACCACTTCCGTCACCAGCCTCGCTCCTTCCAGACCTGCCCTGGGAGTCCCTGCCTCCTGGCCTTCACCTGCATCACGGTCTGCACTTCTCAGAGCCCTGCCCTTCCTTGAAGAACAAAGCCTGGCCAAATTGTGTCAGCCTTCTGGCCTGCAGTGACCCCTGCTTACATCGTACATAACAATAGCTATAACTTATTGACATTAACTTCA	out-of-frame	AKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALTP|alcpassdssvpgekgkrlthalrllttsvtslapsrpalgvpaswpspasrsallralpfleeqslaklcqpsglq*	.
TALL078	ST3GAL1	EEF1D	-/-	-/-	8:133571693	8:143586852	splice-site	splice-site	duplication	upstream	downstream	2	1	1	952	17961	medium	.	.	.	GAGAGAGAAGGAAGAGGCGATGTGAGCTGGGAAGGGGGCAAGTGTCCGGGACACCCACACCCCTGTATTCTCCTCCGAACCCCTTCATGCCCAAATCCCGGAAACTCCAGCGTGTCTCCAGCCGTG|CAGAAAAATGGCTACAAACTTCCTAGCACATGAGAAGATCTGGTTCGACAAGTTCAAATATGACGACGCAGAAAGGAGATTCTACGAGCAGATGAACGGGCCTGTGGCAGGTGCCTCCCGCCAG___AGCTCAGGCCCCGGGGCCTCCAGCGGCAC	.	.	.
TALL078	OAZ1	METRNL	+/+	+/+	19:2269744	17:83084938	splice-site	splice-site	translocation	downstream	upstream	0	1	3	9374	916	medium	.	.	.	CGCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|CGGGCTGACGCACGAGGCACACAGGAAGGAGGTGGAGCAGGTGTATCTGCGCTGTGCGGCGGGTGCCGTGGAGTGGATGTACCCAACAGGTGCTCTCATCGTTAACCTGCGGCCCAACACCTTCTCGCCTGCCCGGCACCTGACCGTGTGCATCAGGTCCTTCA...AATATTTATTTGGAAAAAACTGGAGAACTGAGACTGCTGGTACCgGACGGGGACGGCAGGCCCGGCCGGGTGCAGTGTTTTGGCCTGGAGCAGGGCGGCCTGTTCGTGGAGGCCACGCCGCAGCAGGATATCGGCCGGAGGACCACAGGCTTCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTG___CGCCGTGCCGTCCCTGCAGTGACACCGA	in-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEs|GLTHEAHRKEVEQVYLRCAAGAVEWMYPTGALIVNLRPNTFSPARHLTVCIRSF	.
TALL078	RP11-497G19.2	RP11-497G19.2(1572),C12orf49(5483)	+/.	./.	12:116702627	12:116704702	intron	intergenic	duplication	upstream	downstream	1	0	2	41	142	medium	.	.	duplicates(1)	.	.	.	.
TALL078	LINC00977	LINC00824(243490),AC068570.1(11625)	-/-	./-	8:129241177	8:128808169	splice-site	intergenic	deletion	upstream	downstream	0	3	0	351	136	medium	.	.	mismatches(1)	TGAGGCTCCCTCTTGCCGGCTCCTGCTCTTGAAACAgACCCAAGTGCAATGTTCAAT|TCCAACTTCAAAGCACTGACACATTTGGTGTCTGATGATGTCCGGCTTTCTCATAGACGGCTACCTTCTTCTCACTGTTACCTCATATGGTGGAAG___T...___TCAGTTTTCA	.	.	.
TALL078	NFRKB	TMEM45B(2550),NFRKB(1083)	-/-	./+	11:129883931	11:129862553	intron	intergenic	inversion	upstream	upstream	0	0	29	506	247	low	.	.	mismappers(1),mismatches(2)	GCACGTTCTCCTAGTCCTGCGGTGCCCCTGCGGGTGGTGCCCACACTTTCAACCACGGATATGAAAACTGCAG___ATAAAGTAGAACTGGGGGACAGTGACCTGAAGATAATGTTAAAGAAGCACCACGAGAAGCGGAAACATCAGCCAGTAAGATGGGAAGGGCGTGCGGCCGTGTGGTTTTCAGCCTGATGTCTCAGGATTGGCTGTCCTGAGGAAGACACGGGGCATCACTGCCTCGTCTGTATGTCCTCCCTACCACTGTGGGCACAGGAGCAGCTGGCGAGGC...|...TGAAACAGCTGTGGAGCCAACCAGCCTCCCAGACCCTCCTCCGCTTCGCAACCCCCTAACCACCCAACAACTAAGCCAGGCTGCCTCCATCCCACATCCTTCAGCTCCACCTCTTCAACCCACAAGAGCTTCAATACACTCCAAAAATTAAAGATACTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTGGCCCAGGCGGGAGTGCAGTGGCGCAATCTCGG	.	.	.
TALL078	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606353	intergenic	intron	deletion/read-through	downstream	upstream	2	5	0	25	27	low	.	.	low_entropy(1),mismatches(1)	.	.	.	.
TALL078	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	7	0	434	616	low	.	.	mismatches(3),read_through(8)	CCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCAAGCACCGCCCCCTGGACGAGCGGGCCCTGCAG___GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCAGCATTGCCAACGACCTCATGTACAGTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCGGAACTGCCCAC	out-of-frame	MGLGRCIWE|gvlqcqvpcsrapagiwlhlhgrpgpwpaetpppqdpeqapppgragpagprelllcarpgpga*	.
TALL078	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021694	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	434	291	low	.	.	mismatches(1)	GTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTAGAGCAGAGCCGGAGCCAGGTGCAGGCCATTGGAGAGAAGGTCTCCTTGGCCCAGGCCAAGATTGAGAAGATCAAGGGCAGCAAGAAGGCCATCAAG___GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTG...CACCGCCCCCTGGACGAGCGGGCCCTGCAG___CCCTCcCAGGAGAAGCTGAAGGAaTTTCCTGTGTGCGTGAGCACCAAGCCGGAGCCCGAGGACGATGCAGAAGAGGGACTTGGGGGTCTTCCCAG	out-of-frame	MPQTCDGTGQMHLGr|*	.
TALL078	IL9R	WASH6P	+/+	+/+	X:156006188	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	506	616	low	.	.	low_entropy(5),read_through(1)	CCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG...CAAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCGCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCAAGCACC...CCCTCcCAGGAGAAGCTGAAGGAaTTTCCTGTGTGCGTGAGCACCAAGCCGGAGCCCGAGGACGATGCAGAAGAGGGACTTGGGGGTCTTCCCAGCAACATCAGCTCTGTCAGCTCCTTGCTGCTTTTCAACAC...GTACAAGAAGTATGTCTTCCTGGACCCCCTGGCTGGTGCTGTAACAAAGACCCATGTGATGCT...GTCCCAGAGAACTACTTC	out-of-frame	QGPLIPPWGWPGNTLVAVSIFLLLTGPTYLLFKLSPr|cspvpstllqsacrnmapssraprtlacrdapatgsras	.
TALL078	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021681	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	434	291	low	.	.	.	TGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GATCTCCCAGCAGGTAGAGCAGAGCCGGAGCCAGGTGCAGGCCATTGGAGAGAAGG...AAGAAGGCCATCAAG___GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCA	out-of-frame	MPQTCDGTGQMHLGr|isqqveqsrsqvqaigek	.
TALL078	IL9R	WASH6P	+/+	+/+	X:156001508	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	278	616	low	.	.	low_entropy(1),read_through(4)	GGGACTGGGCAGATGCATCTGGGAAG___TAACTGCTGCAAGAACGGACAGACACTGCTGCAGAGAACTTGCCACGGTGTTTCATGCTGTGGCTGGTGGTTCCAGGCTGCACGCTCCATTCTAGGAAAGG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCAAGCACCGC...GCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAGTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCGGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCC	out-of-frame	GTGQMHLGSNCCKNGQTLLQRTCHGVSCCGWWFQAARSILGK|gvlqcqvpcsrapagiwlhlhgrpgpwpaetpppqdpeqap	.
TALL078	IL9R	WASH6P	+/+	+/+	X:156004565	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	674	616	low	.	.	read_through(2)	CAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG...GGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGC...GTACAAGAAGTATGTCTTCCTGGACCCCCTGGCTGGTGCTGTAACAAAGACCCATGTGATGCTGGGGGCAGAGACAGAGGAGAAGCTGTTTGATGCCCCCTTGTC	out-of-frame	EPMTTLLSYELAFKKQEEAWE|vfssakypapehlqeygsiftgaqdpglqr	.
TALL078	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100043073	splice-site	intron	deletion/read-through	downstream	upstream	4	1	2	332	164	low	.	.	mismappers(1),mismatches(1)	GCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|ATGGCTATATGCATCCAGTTCATCCTCATGTAGTTAGAAGACTTGCATACCAACATAATCAGACCGTCTGCAGAAATTCTCCTACAGTTGAAATGTAAC	out-of-frame	AVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|maiciqfilm*	.
TALL078	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	2	321	1129	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	AAAGCATTACATAAAAG___TGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTT...AAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAG	out-of-frame	sit*kWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL078	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	3	332	1129	low	.	.	low_entropy(1),mismappers(1),mismatches(1)	TGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAG	in-frame	WIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKI	.
TALL078	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	3	246	1129	low	.	.	mismappers(1),mismatches(2)	CTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATT	out-of-frame	LQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL078	ANKRD36	RP11-734K23.9	+/+	+/+	2:97224879	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	3	2	1	63	167	low	.	.	duplicates(1),mismatches(2)	CTACAATTGAAAATAAAAATTCTGTTCTGAATACAGCCACCAAAATGAAGGATGTACAAACATCCACACCAG___AACAAGACTTAGAAATGGCATCAGAGGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTTGGACATCTG	out-of-frame	TIENKNSVLNTATKMKDVQTSTPEQDLEMASEGEQKRLEEYENNQPQ|flhrhypkqcfttvadrpenfhlkqqselqrqvtnqcgg*	.
TALL078	ANKRD36	RP11-734K23.9	+/+	+/+	2:97224879	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	63	110	low	.	.	.	TAGAAATGGCATCAGAGGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAG___ACACTACCCAAAGCAGTGC	out-of-frame	EMASEGEQKRLEEYENNQPQ|vmasaekgrkpmrgh*	.
TALL078	FUOM	CALY	-/-	-/-	10:133355738	10:133329009	splice-site	splice-site	deletion/read-through	upstream	downstream	4	2	0	668	87	low	.	.	mismatches(4)	GCCGTGCTGAAGCTGCTGCCCCTGGACACCTATGTGGAGAGTCCG___GCTGCAGTCATGGAGCTGGTGCCCAGCGACAAGGAGAGGGGCCTGCAGACCCCAGTGTGGACGGAGTACGAGTCCATCCTACGCAGGGCCGGCTGTGTG___AGAGCCCTGGCAAAGATAGAGAGGTTTGAGTTTTATGAACGGGCTAAGAAGGCTTTTGCTGTTGTGGCAACGGG|GACAAGGACTGCCATCCACCATGGTGAAGCTGGGCTGCAGCTTCTCTGGGAAGCCAGGTAAAGACCCTGGGGACCAGGATGGGGCTGCCATGGACAGTGTGCCTCTGATCAGCCCCTTGGACATCAGCCAGCTCCAGCCGCCACTCCCTGACCAG___GTGGTCATCAAGACACAGACAGAATACCAGCTGTCCTCCCCAGACCAGCAG	out-of-frame	AVLKLLPLDTYVESPAAVMELVPSDKERGLQTPVWTEYESILRRAGCVRALAKIERFEFYERAKKAFAVVATg|trtaihhgeaglqllwear*	.
TALL078	FUOM	CALY	-/-	-/-	10:133356640	10:133329009	splice-site	splice-site	deletion/read-through	upstream	downstream	1	4	0	736	87	low	.	.	.	TGGAGAGTCCG___GCTGCAGTCATGGAGCTGGTGCCCAGCGACAAGGAGAGGGGCCTGCAGACCCCAGTGTGGACGGAGTACGAGTCCATCCTACGCAGGGCCGGCTGTGTG|GACAAGGACTGCCATCCACCATGGTGAAGCTGGGCTGCAGCTTCTCTGGGAAGCCAGGTAAAGACCCTGGGGACCAGGATGGGGCTGCCATGGACAGTGTGCCTCTGATCAGCCCCTTGGACATCAGCCAGCTCCAGCCGCC...ACCAG___GTGGTCATCAAGACACAGACAGAATACCAGCTGTCCTCCCCAGACCAGCAGAATTTCCCTGACCTGGAGGGCCAGAGGCTGAACTGCAGCCACCCAGAGGAAGGGCGCAGG___CTGCCCACC	out-of-frame	ESPAAVMELVPSDKERGLQTPVWTEYESILRRAGCV|dkdchppw*	.
TALL078	FUOM	CALY	-/-	-/-	10:133355738	10:133325566	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	668	35	low	.	.	.	GGCTTTTGCTGTTGTGGCAACGGG|CGTCCTCCGCCAGCTCCTGTGACCAGCGCGTCTCCCGATGCTCTCCGCCGTGTTCGTGTCCCCAGGCGCCCTCGCTGCAGCCCCGCCCCCGTGGGTCTCTGACTCTGTCGCTTTTCTCTAAGTAAAGATTTC	out-of-frame	AFAVVATg|vlrqll*	.
TALL078	FUOM	CALY	-/-	-/-	10:133356640	10:133326991	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	736	104	low	.	.	.	GCCGTGCTGAAGCTGCTGCCCCTGGACACCTATGTGGAGAGTCCG___GCTGCAGTCATGGAGCTGGTGCCCAGCGACAAGGAGAGGGGCCTGCAGACCCCAGTGTGGACGGAGTACGAGTCCATCCTACGCAGGGCCGGCTGTGTG|CTGCCCACCGCACGGATGATCGCCTTCGCCATGGCGCTACTGGGCTGCGTG	in-frame	AVLKLLPLDTYVESPAAVMELVPSDKERGLQTPVWTEYESILRRAGCV|LPTARMIAFAMALLGC	.
TALL078	FUOM	CALY	-/-	-/-	10:133355738	10:133328015	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	668	94	low	.	.	mismatches(1)	CCTGCAGACCCCAGTGTGGACGGAGTACGAGTCCATCCTACGCAGGGCCGGCTGTGTG___AGAGCCCTGGCAAAGATAGAGAGGTTTGAGTTTTATGAACGGGCTAAGAAGGCTTTTGCTGTTGTGGCAACGGG|GTGGTCATCAAGACACAGACAGAATACCAGCTGTCCTCCCCAGACCAGCAGAATTTCCCTGACCTGGAGGGCCAGAGGCTGAACTGCAGCCACCCAGAGGAAG	out-of-frame	LQTPVWTEYESILRRAGCVRALAKIERFEFYERAKKAFAVVATg|wssrhrqntscppqtsrisltwrarg*	.
TALL078	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	3	3	0	12	9	low	.	.	low_entropy(2)	GGACTAGAAGGATTAAAAGAAGTAGCAATCTATATTTTAAGAAGAGATTACTGTAATTTCTTTCAGAAG___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAG	out-of-frame	GLEGLKEVAIYILRRDYCNFFQKPVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwte	.
TALL078	PTGER4(3028),TTC33(17712)	TTC33	./.	-/.	5:40696763	5:40740484	intergenic	intron	deletion/read-through	downstream	upstream	2	4	0	118	12	low	.	.	mismatches(1)	.	.	.	.
TALL078	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31583149	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	1	165	39	low	.	.	low_entropy(1)	CCCCGGAATGGAGGGCTCCGGGCCCAAGTTTGAGGAG___CAGTTGAGAACAACAAGCAATAACAACCATACGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|CACCTGCCAGGAGAACAGGCAGTGGCAGTGTGACCAAGAACCATGCCTGGTGGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGG___CTGGCAGGCTGGGAACCACAGCGCCTTCTGGGGCATGACCCTGGATGAGGGCATTCGCTAC	.	.	.
TALL078	LINC01225	TINAGL1	+/+	+/+	1:31536409	1:31579204	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	165	17	low	.	.	low_entropy(1)	CGAAGAATCTAGCAAACTCAGACTTTACTTCTCCTTTTCGTGGTCCTGGAAACAGCTCAGAATAAAGTGGATCTGGACCTCTACAGAAGAGAGGGAGCTCCAGATTCCAG|GATGTATGCATGG...GGATCCAGACATGATCAAAGCCATCAACCAGGGCAACTATGGGTGAGAGGCCCTAGAGGCACCCTCAGTGGGCACACATGCATACTCATGCATGTATACACGCATGCTGTGCTGTGGGGCACGTC	.	.	.
TALL078	FAM126A	EEF1A1P6	-/-	-/-	7:22953527	7:22511888	intron	exon	deletion	upstream	downstream	0	0	5	12	544	low	.	.	mismatches(6)	AGGAAAACAAAAA...|...ACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGA...AGGACACAGaGACTTtATCAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCT	.	.	.
TALL078	DDRGK1	LZTS3	-/-	-/-	20:3194830	20:3165152	splice-site	splice-site	deletion/read-through	upstream	downstream	2	2	1	1476	153	low	.	.	.	CGGGAGCATGAGGAGTACCTGAAACTGAAGGAGGCCTTTGTGGTGGAGGAGGAAGGCGTAGGAGAGACCATGACTGAGGAACAG___TCCCAGAGCTTCCTGACAGAGTTCATCAACTACATCAAG|GTGTGCCAGAAGGCTGGCGAGATCTCCCTCCTGAAGCAGCAGCTGAAGGACTCGCAGGCGGATGTGTCGCAGAAGTTGAGTGAGATCGTGGGACTGCGCTCGCAGCTGCGGGAGGGCCGGGCTTCGCTGCGGGAGAAGGAGGAGCAGCTGCTCAGCCTGCGGGACTCCTTCAGCAGCAAGCAGGCCAGCCTGGAGCTGGGCGAAGGCGAGCTGCCTGCCGCCTGCCTCAAGCCGGCGCTGACCCCCGTGGACCC	in-frame	REHEEYLKLKEAFVVEEEGVGETMTEEQSQSFLTEFINYIK|VCQKAGEISLLKQQLKDSQADVSQKLSEIVGLRSQLREGRASLREKEEQLLSLRDSFSSKQASLELGEGELPAACLKPALTPVD	.
TALL078	DDRGK1	LZTS3	-/-	-/-	20:3191190	20:3165152	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	1	1117	153	low	.	.	.	CGGCTTCGCCTGGAGGAGGAGCAGAAG___GAGGAGGAGGAGAGGAAGGCCCGCGAGGAGCAGGCCCAGCGGGAGCATGAGGAGTACCTGAAACTGAAGGAGGCCTTTGTGGTGGAGGAGGAAGGCGT...ACTCAG___GACACCATAAATCGCATCCAGGACCTGCTGGCTGAGGGGACTATAACAG|GTGTGCCAGAAGGCTGGCGAGATCTCCCTCCTGAAGCAGCAGCTGAAGGACTCGCAGGCGGATGTGTCGC...CGGGAGAAGGAGGAGCAGCTGCTCAGCCTGCGGGACTCCTTCAGCAGCAAGCAGGCCAGCCTGGAGCTGGGCGAAGGCGAGCTGCCTGCCGCCTGCCTCAAGCCGGCGCTGACCCCCGTGGACCC	out-of-frame	TQDTINRIQDLLAEGTIT|gvpegwrdlppeaaaeglaggcv	.
TALL078	TBCD	METRNL	+/+	+/+	17:82884202	17:83084938	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	2	533	916	low	.	.	low_entropy(1),mismappers(1),mismatches(8)	GTTGTCGCCGTGATCCTGAAGGCGCTGACCTACGACGAGAAGCGGGGTGCCTGCAGCGTGGGCACCAACGTCAGGGACGCCGCCTGCTACGTGTGCTGGGCCTTCGCGCGTGCCTATGAGCCTCAGGAGCTGAAGCCCTTTGTGACTGCAATCTCGAG___TGCACTGGTGATTGCTGCGGTGTTTGACCGAGACATAAACTGCAGAAGAGCAGCCTCT|CGGGCTGACGCACGAGGCACACAGGAAGGAGGTGGAGCAGGTGTATCTGCGCTGTGCGGCGGGTGCCGTGGAGTGGATGTACCCAACAGGTGCTCTCATCGTTAACCTGCGGCCCAACACCTTCTCGCCTGCCCGGCACCTGACCGTGTGCATCAGGTCCTTCACGGACTCCTCGGGGGCCAATATTTATTTGGAAAAAACTGGAGAACTGAGACTGCTGGTACCgGACGGGGACGGCAGGCCCGGCCGGGTGCAGTGTTTTGGCCTGGAGCAGGGCGGCCTGTTCGTGGAGGCCACGCCGCAGCAGGATATCGGCCGGAGGACCACAGGCTTCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGAC	out-of-frame	VVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIAAVFDRDINCRRAAS|radargtqegggagvsalcggcrgvdvpnrcshr*	.
TALL078	RUNX3	CLIC4(28966),RUNX3(26221)	-/-	./-	1:24919240	1:24873290	splice-site	intergenic	deletion/read-through	upstream	downstream	2	1	2	609	7	low	.	.	.	CGGCCGTCATGAAGAACCAGGTGGCCAGGTTCAACGACCTTCGCTTCGTGGGCCGCAGTGGGCGAG___GGAAGAGTTTCACCCTGACCATCACTGTGTTCACCAACCCCACCCAAGTGGCGACCTACCACCGAGCCATCAAGGTGACCGTGGACGGACCCCGGGAGCCCAGAC|TTGCTTGGAACACTGAACCAGGAGTCAAGACCAAGAGATGGGTTCTAGGTGTGGATTTGACGCTGTGTGACCTTGG___CCCAGGCAACAGAGGCACAGAGAGATGGAGCGGCTTGCCCAAGGCTACACGGCCAGCCAGAC	out-of-frame	AVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREPR|lawntepgvktkrwvlgvdltlcdlgpgnrgterwsglpkatrpar	.
TALL078	PTPRCAP	PPP1CA	-/-	-/-	11:67437617	11:67419597	splice-site	splice-site	deletion/read-through	upstream	downstream	0	5	0	1558	44	low	.	.	mismatches(1)	CTGGAGGTGGGTGCCCGGCACGGAGGGGCCTGCGGACCAATG|CTTCTCCAGCAGCGCCAGCACTGTGTCCACCACTGCACCCAGCTCTGCCCGCGGGTGCAGACGCCATGCCTGCCGCCCCCGCCAGCGCCAGCCACTGAGCTTCACAGCTACCTGCAGCAAGGAGGGGAAAG	in-frame	M|LLQQRQHCVHHCTQLCPRVQTPCLPPPPAPATELHSYLQQGGE	.
TALL078	PTPRCAP	PPP1CA	-/-	-/-	11:67437617	11:67401199	splice-site	splice-site	deletion/read-through	upstream	downstream	0	4	0	1558	1882	low	.	.	mismatches(1)	TCTCGCTCGACACAGCCAGAGCTGGAGGTGGGTGCCCGGCACGGAGGGGCCTGCGGACCAATG|TGCAGGGCTCGCGGCCTGGCAAGAATGTACAGCTGACAGAGAACGAGATCCGCGGTCTGTGCCTGAAATCCCGGGAGATTTTTCTGAGCCAGCCCATTCTTCTGGAGCTGGAGGCACCCCTCAAGATCTGCG___GTGACATACACGGCCAGTACTACGACCTTCTGCG...CCTTGGAGACCATCTGCCTGCTGCTGGCCTATAAGATCAAGTACCCCGAGAACTTCTTCCTGCTCCGTGGGAACCACGAGTGTGCCAGCATCAACCGCATCTATGGTTTCTACGATGAGT___GCAAG	out-of-frame	M|crarglarmys*	.
TALL078	PTPRCAP	PPP1CA	-/-	-/-	11:67437617	11:67399665	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	1558	2087	low	.	.	.	CTGGAGGTGGGTGCCCGGCACGGAGGGGCCTGCGGACCAATG|GCAAGAGACGCTACAACATCAAACTGTGGAAAACCTTCACTGACTGCTTCAACTGCCTGCCCATCGCGGCCATAGTGGACGAAAAGATCTTCTGCTGCCACGGAG___GCC	out-of-frame	M|ardattsncgkpsltastacpsrp*	.
TALL078	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69085930	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	2	1	1	27	15	low	.	.	mismatches(1)	CCTGGAAACAGCAG___CCTGGCCCCTGCCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAGTACTGGGCCAACAACTTCGATGACTTTGCG___GCTGCCCTGGTCACTCTGTGGAACTTGATGGTGGTGAACAACTGGCAGGTGTTTCTGGATGCATATCGGCGCTACTCAGGCCC|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGT-AATTATAACAAAAC	out-of-frame	PGNSSLAPANGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRRYSGp|dpggshvespeqhqlltmlltvvdrlsmpr*	.
TALL078	CLNS1A	RP11-739B23.1	-/-	+/-	11:77522304	11:77474669	intron	exon	deletion/read-through/5'-5'	upstream	downstream	1	1	2	8	21	low	.	.	mismappers(1)	TCAAGCTCAACTTGCAGAACTAAGAAAAGCTCCTTGGGAAACCTGATCTCACACCCTTGTCTACACAGTCCCCATGCAGGATTCCTAACCTGTG|AAAGAAAACATAATACATGTCTGGCTGTGAGATCACACGACATCGGATAGTTTTCAAATTCAGCCCTTGACAACGAGCTCATAGATGCGGTGGTGCTTTGTTAACCTGAAAAGGACCCTCAGCGCCGGAAGTTAGCCGTCTTTCTCCATCCTGACTACTACAGTAGCC...CGCCCTCATGCGGGCCAGGGTTTGGCCTCGCTCCCACGGGTCGGTCAGGCCCTCCCCGCCCCCTCTCACCTGCGGGAGGCGGGGCGGGCACGGCTCCACCGGAGCCGCAGCCGCCGCCGCCGCG	.	.	.
TALL078	IKBKG	CTAG1A	+/+	+/+	X:154556376	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	3	1	0	241	12	low	.	.	mismatches(1)	G___...CCAGATTCTGCGGGAGCGCTGCGAGGAGCTTCTGCATTTCCAAGCCAGCCAGAGGGAGG...___AGACTCGGCCTGGAGAAGCTCGATCTGAAGAGGCAGAAGGAGCAGGCTCTGCGGGAGGTGGAGCACCTGAAGAGATGCCAGCAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCaTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGgCCCAGCACGAGTGG	out-of-frame	RLGLEKLDLKRQKEQALREVEHLKRCQQ|ptdccrppptaalhqllspaafpvdvdhavlsarvfgsaslraealspawrpilghassprewaqhe	.
TALL078	IKBKG	CTAG1A	+/+	+/+	X:154552189	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	643	12	low	.	.	low_entropy(1)	CTGGGCGAAGAGTCTCCTCTGGGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAG|CCGACTGACTGCTGC...AGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTC	out-of-frame	LGEESPLGKPAMLHLPSEQGAPETLQRCLEENQELR|ad*	.
TALL078	ZNF577	AC006272.1	-/-	-/-	19:51860904	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	1	2	1	55	14	low	.	.	mismappers(2),mismatches(1)	TGTCATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGT...CAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTcGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAG...AAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAG	out-of-frame	QGEPPGIAEGAAHSQICPGYSFRRRTLQMEGMQES*eeshlia|gfiiiq*	.
TALL078	SMUG1	FLJ12825	-/-	+/-	12:54165475	12:54121438	3'UTR	exon	deletion/read-through/5'-5'	upstream	downstream	0	0	4	0	43	low	.	.	mismatches(1)	GTGCCCTTTGGGGAAGTAAGCATGGTCCGGGACTGGTTGGGCATTGTGtGGCCTGTGCTGACCCCTCCCCAAGAGCATCCTAAACGACCAGTGCTGGGACTGGAGTGCCCACAGTCAGAA___GCTG...|...AGACAGGTTTGACCAGGCAACTGAAAAGACATCCCTAAGGGAAGACAAAGCAAAGGTATGAAAGGAACACACGTCCCTGACTGACTAGGAGGAACAGAGCTGCCTGCTGTCTGGAACCGCTTCCTCCCAGACTAAGTGAGA	.	.	.
TALL078	RP11-405F3.4	GPR56	-/-	+/-	16:57686713	16:57664971	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	1	3	0	62	154	low	.	.	.	GTAGGGAGAATGGTTG___ATCCCTGGAGATCCCATCCATGTCATGTGGACATCATATCACATGATTCTGCCCTTCTGGTCGCAGCTGATTGGACCAGAGATGGACGATGGACACCCAACTTGCAAG|TTTCCAAATTCTCTACAATGAACATGTACTTCTTTTTAATATCAAAAGACAAAAGAATTGGTACGTAAAAAGAACATCCTTCCCATCTTCAAGGTCAAGATTGAACGCTGACTCCTGCAGGAAGTCTTCCAGGATTCCCAGGCAGGAATGATGGCTCCCTG	.	.	.
TALL078	PHOSPHO2	SSB	+/+	+/+	2:169695247	2:169792573	splice-site	5'UTR	deletion/read-through	downstream	upstream	3	1	0	95	29	low	.	.	mismatches(2)	GCGAGCTGGGCTTGTGAGTGGGGCTGCCGAGAGGGCAGGCGTGGGGCGAGGCCAAAGGACTGAACCCGCAGGAGCGTCACGGGCGCCGGGGCGGCTGCCGACGGCGGGACTGG___GTTTTCTATCAGATGTTCCACGTAATAATGCTG|GATACATGAAGAAGATGGCCATCTGCAAACCAGGAAGCAGGTCATCATGAGACACCAGATCTAACAGCATCTTGATCTTGG	.	.	.
TALL078	PHOSPHO2	SSB	+/+	+/+	2:169697531	2:169800952	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	103	1419	low	.	.	mismatches(1)	ATTTTGCTCCAAACCAGAAGACTCTGTTCCCTGTATATAGAATAGGAGTAATATTTGAAAACAACTGGCTGATGTTTAAAACTGAAGATTGTCATGATTGTTTATCCTAATCCCAATGCTGAAGTAAGATTGTCTTGGAAATACTAAGTTGG|ATAGCCGCAATGGCTGAAAATGGTGATAATGAAAAGATGGCTGCCCTGGAGGCCAAAATCTGTCATCAAATTGAG___TATTATTTTGGCGACTTCAATTTGCCACGGGACAAGTTTCTAAAGGAACAGATAAAACTGGATGAAGGCTGGG	.	.	.
TALL078	CLECL1	KLRB1	-/-	-/-	12:9732949	12:9601599	splice-site	splice-site	deletion/read-through	upstream	downstream	2	1	1	1513	69	low	.	.	mismatches(1)	CATTTATTCATGGAGGAAGTCCACCACCCACTTGGGGAGCAGAAGGAAATTTGCCATCTCAATTTACTTATCAGAAGTTTCTTTGCAGAAATATGATTGTCCCTTCAGTGGGACATCATTTGTGGTCTTCTCTCTCTTTTTGATCTGTGCAATGGCTGGAGATGTAGTCTACGCTGACATCAAAACTGTTCGGACTTCCCCGTTAGAACTCGCGTTTCCACTTCAGAGATCTG|ATGTCTGTCAGGGTTCACCTTGGCATCAATTTGCCCTGAAACTTAGCTGTGCTGGGATTATTCTCCTTGTCTTGGTTGTTACTGGGTTGAGTGTTTCAG___TGACATCCTTAATACAGAAATCATCAATAGAAAAATGCAGTGTGGACATTCAACAGAGCAGGAATAAAACAACAG___AGAGACCGG	in-frame	IYSWRKSTTHLGSRRKFAISIYLSEVSLQKYDCPFSGTSFVVFSLFLICAMAGDVVYADIKTVRTSPLELAFPLQRS|dVCQGSPWHQFALKLSCAGIILLVLVVTGLSVSVTSLIQKSSIEKCSVDIQQSRNKTTERP	.
TALL078	EEF1A1P6	DNAH11	-/-	+/-	7:22510639	7:21743455	exon	intron	deletion/5'-5'	upstream	downstream	0	0	4	6054	0	low	.	.	mismatches(5)	CCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGgAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGT...GTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCT...|...ACATTAGTCGG	.	.	.
TALL078	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	3	1	0	15	6	low	.	.	.	CGCCTGcTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCC	.	.	.
TALL078	CD53	RP11-96K19.5(38613),CCNT2P1(4438)	+/+	./+	1:110891471	1:111003262	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	3075	12	low	.	.	mismatches(1)	GCCTTGTCTCGGCCACCTCAAGGATAATCACTAAATTCTGCCGAAAGGACTGAGGAACGGTGCCTGGAAAAG___GGCAAGAATATCACGGCATGGGCATGAGTAGCTTGAAACTGCTGAAGTATGTCCTGTTTTTCTTCAACTTGCTCTTTTGG|CACTATTTACAATAGAAAAGACTTGGAACCAACCCAAATGCCCATCAATTATTGAATTTGAAAAATGTGGCACATATACATCATGAAATACTATGCAGCCATAAAAAGGAATGAGATCATGTCCTTTGCAGGGACATAGATGGAGCTGGAAGCCATCATTCAAGCAAACTAACACAGGAACAGAAAACCAAACCCCGCATATTCTCACTCATAAGTGGGAGTTGAACAATG	out-of-frame	MGMSSLKLLKYVLFFFNLLFW|hylq*	.
TALL078	Y_RNA(4459),RP11-973H7.1(9374)	CEP76	./-	-/-	18:12765277	18:12701113	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	183	158	low	.	.	mismatches(1)	TCgCaGACAAcGTCTCCTCCCTGTGTCCTCACATGGCCTCTACTCTGTGCGCACCTGGAGAGAGAGCGCCCC[t]GTCCCTCCCTCTTCTGATGAGGTCACCAGCCCTATCAG|ATGGATGTCCATGGTAGAATAAGAGAAATCCTTGCTGAGACTATACGGGAAGAATTGGCACCTGATCAACAGCATTTATCAACAGAAGATTTGATCAAAGCCCTTAGACGTCGAGGAATCATTGACGATGTGATGAAAGAACTTAATTTTGTTACT___GACAGTGTTGAGCAAGAACTCCCTTCCTCTCCAAAACAACCTATTTGTTTTGATAGACAAaCG	.	.	.
TALL078	GADL1(139185),MIR466(127754)	GADL1	./-	-/-	3:31033950	3:30861765	intergenic	splice-site	deletion/read-through	upstream	downstream	1	2	0	107	16	low	.	.	mismatches(1)	CTGTCTTGCAGCCAAGAGGGAGTTATAAACATCCATCTGCAAGGGAAGATCCATCAGCTCCTATCAACCACACAGGAAAGATTTACAG___GTGGAATGATATTGGTTTCCCTGTAAGTTTCTCACCATCCTGCAGCCTTCTGAGG|GAGATATTGATCAACAAGAGATGATTCCAAGTAAGAAGAATGCTGTTCTTGTGGATGGGGTTGTGCTGAATGGTCCTACAACAGATGCAAAAGCTGGAGAAAAATTTGTTGAAGAGGCCTGTAGGCTAATAATGGAAGAGGTGGTTTTGAAAGCTACAGATGTCAATGAGAAG___GTGTGTGAATGGAGGCCTCCTGAACAACTGAAACAGCTTCTTGATTTGGAGATG	.	.	.
TALL078	HMGB3P30(25785),AMOT(58198)	LHFPL1	./-	-/-	X:112716305	X:112660725	intergenic	splice-site	deletion/read-through	upstream	downstream	2	1	0	16	10	low	.	.	.	CCGCCTTGTGGTTTGATCTCAGACTGCTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTAGGACTCTCCGAGCCAGGTGCGGGAAATAATCTCGTGGTGCGCCGTTTTTGAAGCCGGTCTGAA...GTTGGACCAAGGCAGTATTACTGATGATGAATCCCTCTTTCAGACTGCTGCAGATGCTTGTACTTAGAGTACTTAACCTGCATATAAG|GGCTGCTGATAAGCTCAGGCTGTGCCTTATACCCTTTAGGATGGAATAGCCCGGAGATAATGCAAACATGTGGGAATGTCTCCAATCAAT	.	.	.
TALL078	LRRC3C(7775),GSDMA(10451)	GSDMA	./+	+/+	17:39952522	17:39965683	intergenic	splice-site	deletion/read-through	downstream	upstream	1	2	0	6	7	low	.	.	.	CTCAATGCCCATCGGAAgACGTTGTAAGGCGTTGAGCCCCCAACGCCCCCTCACCACAAGACCCTGCTGTGACCATCTTTTCCTG|AGACAATGACCATGTTTGAAAATGTCACCCGGGCCCTGGCCAGACAGCTAAACCCTCaAGGGGACCTGACACCACTTGACAGCCTCATCGACTTCAAGCGCTTCCATCCCTTCTGCCTGGTGCTGAGGAAGAGGAAGAGCACGCTCTTCTGGGGGGCCCG___ACCCAACAGACACTGGGAATTTTGGCTTTAAGAATATGCTGGACACCCGAGTGGAG	.	.	.
TALL078	IRGM	CTC-311G1.1	+/+	-/+	5:150879646	5:150951737	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	0	3	0	119	3	low	.	.	.	GCCTGCCATGAGAAATACCTCAAGAGTACTCCAGAGAATTCCACAAGGCCCAGAAATAT|ACAATGAAACATCTTCAGCTATGATAGCTTCTGGTTCTTCTGGCATATTATTTCAATCTGAAAAAAAGAGATGATGAAAAAGACTAAAAATAAGGAAAAAGTGAGACTGAGGTAGAAGAGGTAAA___GGTCTGCTTACAGAACAAGGCACAGCAAGGAGGCAAGACACAAGCAAGAAATGTGCTTGATGTTACCCACTGCAGTCCTTCTTCCACTCTGGAGGATTCTGAAGACTCA	.	.	.
TALL078	TBC1D31	TBC1D31(26576),FAM83A(231)	+/+	./+	8:123144855	8:123178729	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	427	7	low	.	.	mismatches(1)	GGAAGCTGAAGGAAAAGAGTTCCGTTTGAGATCAGCAAAGAAAGCTTCTGCTCTTTCAGATGCGTCTAGAAAGTGGTTTTTAAAGCAAGAGATAAATGCGGCTGTAGAACATGCTGAAAATCCATGTCATAAAG|GAGCCCGGCTTCTCATCCTTTCTCTTATTGTTGGATGACCTCATGAAAAGGAGACAACCACACTTCAGATGGCCACAGGAAGGAAGAAGGGAAGTGGAGTCCTCCATAATCCACAGTGCCTGTCACTGAGGGCTCCTTGATAAGGATTTTTCAAGGTATGAACGTGCAGTTCAACAGCTGGCCAGACTTCCTGGTTCAGAAGTGTAATCCTAGGT	out-of-frame	EAEGKEFRLRSAKKASALSDASRKWFLKQEINAAVEHAENPCHK|garllilslivg*	.
TALL078	CLEC4D	RP11-561P12.5	+/+	-/+	12:8519160	12:8565523	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	2	0	325	7	low	.	.	.	CCCCAGCTGATcCCTTCGGTTATTGCTGTAGTTTTCATCTTACTTCTCAGTGTCTGTTTTATTGCAAGTTGTTTGG___TGACTCATCACAACTTTTCACGCTGTAAGAGAGGCACAGGAGTGCAC...AACTGCTATTTTCCTCTTACTGACAACAAGACGTGGGCTGAGAGTGAAAGGAACTGTTCAGGGATGGGGGCCCATCTGATGACCATCAGCACGGAAGCTGAGCAG|GATGCAAAGCCAGAATGCGAGCAGTGACCACCACACTTGACAAATCCGTTGTTGCACACATTTGTACTCTTCAATCAACAAAACCTGATGCAAAAAACAGAAAAGGGGGAGATGTACATGCATTTTCCCTCACTGCAAAAAAA	out-of-frame	NCYFPLTDNKTWAESERNCSGMGAHLMTISTEAEQ|dakpeceq*	.
TALL078	PTPN22	RSBN1	-/-	-/-	1:113829592	1:113798036	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	2	528	280	low	.	.	.	AAGAACTtTAGAGTCCTTCTTTCTTGCCGATGAAGATT___GTATGCAGGCCCAATCTATAGAAACATATTCTACTAGCTATCCTGACACCATGGAAAATTCAACATCTTCAAAACAGACACTGAAGACTCCTGGAAAAAGTTTCACAAGGAGTAAG|AAACACCAGATGAAAATGGTAAAACCCAGAGAGCCGATGATTTTGTCTTGAAGAAAATAAAGAAGAAAAAGAAAAAGAAACACCGAGAAGACATGCGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAAC	out-of-frame	RTLESFFLADEDCMQAQSIETYSTSYPDTMENSTSSKQTLKTPGKSFTRSK|khqmkmvkprepmils*	.
TALL078	PTPN22	RSBN1	-/-	-/-	1:113819577	1:113777808	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	500	119	low	.	.	read_through(1)	TGCCCACCAAACAAGCCTGCAGAATCTGTTCAGTCAAATAACTCCAGCTCATTTCTGAATTTTG|GTCAACAGGACATACTGCTGTGGCACCTACCGAGCAGGTCCTATGCGGCAGATAAGTCTCGTTGGAGCAGTAGATGAAGAAGTTGG	out-of-frame	CPPNKPAESVQSNNSSSFLNF|gqqdillwhlpsrsyaadksrwssr*	.
TALL078	PTPN22	RSBN1	-/-	-/-	1:113819577	1:113798036	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	500	280	low	.	.	read_through(15)	AGCTATCCTGACACCATGGAAAATTCAACATCTTCAAAACAGACACTGAAGACTCCTGGAAAAAGTTTCACAAGGAGTAAG___AGTTTGAAAATTTTGCGAAACATGAAAAAGA___GTATCTGTAATTCTTGCCCACCAAACAAGCCTGCAGAATCTGTTCAGTCAAATAACTCCAGCTCATTTCTGAATTTTG|AAACACCAGATGAAAATGGTAAAACCCAGAGAGCCGATGATTTTGTCTTGAAGAAAATAAAGAAGAAAAAGAAAAAGAAACACCGAGAAGACATGCGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGACCCGCATCAGTAAAGAAATTCTCACCCAAGGACAAATtAcTA	in-frame	SYPDTMENSTSSKQTLKTPGKSFTRSKSLKILRNMKKSICNSCPPNKPAESVQSNNSSSFLNF|eTPDENGKTQRADDFVLKKIKKKKKKKHREDMRGRRLKMYNKEVQTVCAGLTRISKEILTQGQIt	.
TALL078	TSPAN33	SMO	+/+	+/+	7:129167560	7:129203384	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	683	64	low	.	.	.	CAACACTATGTGTGGCCAAGGTATGCAGGCCTTTGACTACTTGGAAGCTAGCAAAGTCATCTACACCAATGGCTGTATTGACAAGTTGGTCAACTGGATACACAGCAACCTATTCTTACTTGGTGGTGTGGCTCTAGGCCTGGCCATCCCCCAG|GCCTCCGGAATGCCCCCCGCTGCTGGGCAGTGATCCAGCCCCTGCTGTGTGCCGTATACATGCCCAAGTGTGAGAATGACCGGGTGGAGCTGCCCAGCCGTACCCTCTGC...AGTGCCCTTGGTTCGGACAGACAACCCCAAGAGCTGGTACGAGGACGTGGAGGGCTGCGGCATCCAGTGCCAGAACCCGCTCTTCACAGAGGCTGAGCACCAGGACATGCACAGCTACATCGCGG	out-of-frame	NTMCGQGMQAFDYLEASKVIYTNGCIDKLVNWIHSNLFLLGGVALGLAIPQ|asgmppaagq*	.
TALL078	TSPAN33	SMO	+/+	+/+	7:129164569	7:129203384	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	0	934	64	low	.	.	.	CCTGGGCcTCGTCTTCTCAGACAAG___GCTCGAGGGAAAGTGAGTGAGATCATCAACAATGCCATTGTGCACTACCGAGATGACTTGGATCTGCAGAACCTCATTGATTTTGGCCAGAAAAAG|GCCTCCGGAATGCCCCCCGCTGCTGGGCAGTGATCCAGCCCCTGCTGTGTGCCGTATACATGCCCAAGTGTGAG	out-of-frame	LGlVFSDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKK|asgmppaagq*	.
TALL078	TSPAN33	SMO	+/+	+/+	7:129164569	7:129205203	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	934	76	low	.	.	.	ATCGTGGTGGGTGTCCTCATGTTCCTGCTCACCTTCTGTGGCTGCATTGGGTCCCTCCGCGAGAACATCTGCCTCCTGCAGACG___TTCTCCCTCTGCCTCACCGCTGTGTTCCTGCTGCAGCTGG...GACTTGGATCTGCAGAACCTCATTGATTTTGGCCAGAAAAAG|AATGAGGTGCAGAACATCAAGTTCAACAGTTCAGGCCAGTGCGAAGTGCCCTTGGTTCGGACAGACAACCCCAAGAGCTGG	in-frame	DLDLQNLIDFGQKK|NEVQNIKFNSSGQCEVPLVRTDNPKS	.
TALL078	PIK3R6	SPDYE4	-/-	-/-	17:8804041	17:8757492	splice-site	splice-site	deletion/read-through	upstream	downstream	2	1	0	799	12	low	.	.	.	CTCTCCCTATGCTACCAGAAG___GCCTTGCTTAGCCACCGGCCCCGAGAGGTCACCGTTTCCCTGCGGGCCACTGGGCTGATCCTGAAGGCCATTCCAGCCAGCGACACAGAAG___...GTGACCAACACCTTCAGGACGAACAATATCCAGATCCAGAGCCGGGACCAGAGGCTGCTGACACTGTCGCTGGACAAGGACGATCAACGCACTTTCAGGGATGTGGTCAG|CCCCTTGGATAGATCCCAGCCCCCAGCCTCAATCCCTTGGCCTGAAAAGGAAGAGCGAATGGTCAGACGAATCCGAGGAGGAGCTGGAGG	out-of-frame	VTNTFRTNNIQIQSRDQRLLTLSLDKDDQRTFRDVVs|pldrsqppasipwpekeermvrrirggag	.
TALL078	PIK3R6	SPDYE4	-/-	-/-	17:8804041	17:8756436	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	799	27	low	.	.	.	GAGGTTGTCAAGTCCTCCAACTTGGCGGGAAAGTCCTTCTCT___ACAGTGACCAACACCTTCAGGACGAACAATATCCAGATCCAGAGCCGGGACCAGAGGCTGCTGACACTGTCGCTGGACAAGGACGATCAACGCACTTTCAGGGATGTGGTCAG|GGGATCCTGTCGTTCAAAAATTCCTGGCCTGGGACAAAGACCTGAGGGTGTCAGACAAG___TATCTCCTGGCTATGGTCATAGCGTATTTTAGCCGTGCCGGCCTCTTCTCGTGGCAATACCAACGCATTCATTTCTTCCTGGCTCTGTGAGTAGTTTGC	out-of-frame	EVVKSSNLAGKSFSTVTNTFRTNNIQIQSRDQRLLTLSLDKDDQRTFRDVVr|gscrskipglgqrpegvrqvspgyghsvf*	.
TALL078	HNRNPA1P7	B4GALT6	-/-	-/-	18:32412578	18:31679552	exon	intron	deletion	upstream	downstream	0	0	3	349	61	low	.	.	.	GGATAAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTTAGAAAAGCCCTGTCAAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGG...|...GAATCACGG	.	.	.
TALL078	TRAK1	NKTR	+/.	+/.	3:42163746	3:42646016	intron	3'UTR	deletion	downstream	upstream	0	0	3	2	1041	low	.	.	mismatches(1)	.	.	.	.
TALL078	CD300A	CD300A(21228),CD300LB(15150)	+/+	./+	17:74481833	17:74506024	splice-site	intergenic	deletion/read-through	downstream	upstream	1	2	0	678	49	low	.	.	.	GGAGGTGGTGAACTCACA___GCTCCCGCTGCTCCTCTCCCTGCTGGCATTGTTGCTGCTTCTGTTGGTGGGGGCCTCCCTGCTAGCCTGGAGGATGTTTCAGAAATGGATCAAAG___CTGGTGACCAT...CGCAGAGTGAGCTGCACTACGCAAATCTGGAGCTGCTGATGTGGCCTCTGCAGGAAAAGCCAGCACCACCAAGGGAGGTGGAGGTGGAATACAGCACTGTG|AAGACAGGAATGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATGTCCCCTGTGACCTGCACATATACATCCAGATGGCCTGAAGCAACTGAAGATCCACAAAAGAAGTGAAAATAGCCTTAACTGATGACATTCCACCATTGTGATTTGTTCCTG	out-of-frame	QSELHYANLELLMWPLQEKPAPPREVEVEYSTV|ktgmsgl*	.
TALL078	RIN3	LGMN	+/+	-/+	14:92685150	14:92727612	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	1	1	1	522	5	low	.	.	mismatches(1)	CATGGACCCCGCCCTGCAGCTGGGGGAGG___GTTCCTACTATCTGACCACCACCTACGGGGCCCTGGAGCACATCAAGAGCTACGACAAGATCACGGTGACCCGGCAGCTGAGTGTGGAGGTGCAGGACTCCATCCACCGCTGGGAGCGCCGGCGTACTCTCAACAAGGCCCGGGCCTCCCGCTCCTCCGTACAG|CTGATGCTCTTCCCTCCACGCGGAAAGAGCTTCTGTGGAAATCCCGTCATCCTTCAAACCCACGTCAAGCCTCTCCTCCAAGAAGCTGCATTCCCATCCCTCTCCTGATGGACCTCATCTACTTCTGGACCCAAACCCGGCAACTGGAGCTGCTGTAGAGACTGCTCTTTCTCAGCCTCGAGTTCAG___GACCACTTGTCGTGTATGCGGTCCATCACTGAACAAACTTG	out-of-frame	MDPALQLGEGSYYLTTTYGALEHIKSYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQ|lmlfpprgksfcgnpvilqthvkpllqeaafpsls*	.
TALL078	PCNX	SIPA1L1	+/+	+/+	14:71096018	14:71356685	intron	intron	deletion/read-through	downstream	upstream	0	0	2	3	2	low	.	.	mismappers(1)	CCCTGGGCAACATAGCAAGACCtTGTCTCTACAAAAAA...|...CAGCCTGGGCAACAGAGTGAGACCATGTCTCTACAAAATACAGCAACAACAAATACTATTTCACTGAGGGATATAAAGAATATTTTATGGTTGTGTTACTTTAAAATTCTATTTAAGCTAGCAGG	.	.	.
TALL078	CLN8	CLN8(14102),MIR596(16557)	+/+	./+	8:1771597	8:1800674	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	0	145	7	low	.	.	mismappers(1)	GCCGACAAGGCGCGTGGCCAGCAGAACTGGTGCTGGTTTCACATCACGACAGCAACGGGATTCTTTTGCTTTGAAAATGTTGCAGTCCACCTGTCCAAtTTGATCTTCCGGACATTTGACTTGT...CTTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGTTGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAG|GAGAGTTGGGTGATAGGAACACAAGGAGCAGAGAACGCACTGGCCTCTGACAGCCGCTCTGTGCAGATTCAGTCCTTCAGCCACCCGCAGGAATTGCCGCCgGAGTAGGAC...AGAAATTACAGCAGTGAGAAAACTATGACGTTGAAAGATACCTGATCTAACCAACCCCCATCCTGCCTTTGACCTCCAAACTGTCTTTCATCACTCCTAGGCCTGGGCCAAACTAATTTTGGAAG	out-of-frame	FAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLK|eswvigtqgaenalasdsrsvqiqsfshpqelppe*	.
TALL078	SBK1	NPIPB6	+/+	-/+	16:28319197	16:28362123	splice-site	intron	deletion/read-through/5'-5'	downstream	upstream	2	0	0	218	12	low	.	.	mismappers(1)	CCAACAGCCTCTCCTCCAGCCCCTTCATCATCAAGGTCTTTGACGTGGTCTTTGAGACAGAGGACTGCTACGTCTTTGCCCAGGAGTACGCACCTGCTGGGGACCTGTTTGACATCATCCCTCCCCAG|AGTCTCGCTCTGTCGCACAGTCTGGAGTGCAATGGCATGATCTCGG	out-of-frame	NSLSSSPFIIKVFDVVFETEDCYVFAQEYAPAGDLFDIIPPQ|slalshslecngmis	.
TALL078	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853401	18:48127323	exon	intron	deletion/read-through	downstream	upstream	0	0	2	20	0	low	.	.	mismappers(1),mismatches(7)	...AGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGGGGTATACTACGG?CA|...CGAGACCTCCT	.	.	.
TALL078	RAP1B	CPM	+/+	-/+	12:68652005	12:68880753	CDS	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	6983	0	low	.	.	mismappers(1)	GCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCTGCTTTG___ACTGTACAATTTGTTCAAGGAATTTTTGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAAAG___CAAGTTGAAGT...|...AAGAAACGAGG	.	.	.
TALL078	RP11-449H3.3	TCERG1	+/+	+/+	5:146323792	5:146469603	intron	CDS	deletion/read-through	downstream	upstream	0	0	2	1	311	low	.	.	mismappers(1),mismatches(2)	CCTTTTTTTATATTC...|...GCAGCTTCACCTGCTACCTTAGCTGGAGCAACAGCAGTTTCTGAATGGACTGAATATAAAACAGCAGATGGGAAGACATATTATTATAATAATAGAACATTAGAATCAACCTGGGAAAAACCCCA	.	.	.
TALL078	GNA13	CTD-2535L24.2	-/.	-/.	17:65014034	17:65587366	3'UTR	intron	deletion	downstream	upstream	0	0	2	1477	0	low	.	.	mismappers(1),mismatches(2)	.	.	.	.
TALL078	ARHGAP26	NR3C1	+/+	-/-	5:142961997	5:143400852	intron	splice-site	inversion	downstream	downstream	1	0	0	8	856	low	.	.	.	TATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCT___CATCTGTTAGACAAAAATGACGACAGATCCATTTCCTGGTAGAAATTACACATCTTTTGAATGGTGTTCCTAACCCTCAGCATTCCCAG|TTGATATTCACTGATGGACTCCAAAGAATCATTAACTCCTGGTAGAGAAGAAAACCC	out-of-frame	ITMQALSEEDRRLWMEAMDGREPhlldknddrsisw*klhif*mvfltlsips|*	.
TALL078	PQLC1	CTDP1	-/-	+/+	18:79919184	18:79695225	splice-site	splice-site	inversion	upstream	upstream	1	0	0	451	321	low	.	.	.	GGGCTACATCACCTACCTGTCCATTGACTCCGCCCTGTTTGTGGAGACCCTGGGCTTCCTGGCTGTGCTGACCGAAGCCATGCTGGGTGTGCCCCAGCTTTACCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|AGCGGTTCTGGTGAGGTTGGAAGGATGCAGCCACCCGGTTGTCATGAAAGGCCTGTGTGCTGAATGTGGC	in-frame	GYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMr|AVLVRLEGCSHPVVMKGLCAEC	.
TALL078	PQLC1	CTDP1	-/-	+/+	18:79919184	18:79736355	splice-site	splice-site	inversion	upstream	upstream	0	1	0	451	625	low	.	.	.	CCGAAGCCATGCTGGGTGTGCCCCAGCTTTACCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|GTGGACGACATCCTTGGAGtAGGCAGCGACGACAGCGACAGCGAGAAGAGGAGGCCTGAGGAGCAGGAGGAGGAGCCCCAGCCCCGGAAGCCAGGGACCCGCAGGGAGCGGACGCTCGGGGCACCTGCGTCCAGCGAGAGaAGCG	out-of-frame	EAMLGVPQLYRNHRHQSTEGMr|wttsle*	.
TALL078	PQLC1	CTDP1	-/-	+/+	18:79919184	18:79753652	splice-site	splice-site	inversion	upstream	upstream	1	0	0	451	705	low	.	.	.	GCTTCTCGGACTACGTGCAGTGCGTCCTGGCCTTCACGGGCGTGGCGGGCTACATCACCTACCTGTCCATTGACTCCGCCCTGTTTGTGtAGACCCTGGGCTTCCTGGCTGTGCTGACCGAAGCCATGCTGGGTGTGCCCCAGCTTTACCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|AGGCCACAAGAGGAAGCTGAATGAAGAGGACGC	in-frame	FSDYVQCVLAFTGVAGYITYLSIDSALFV*TLGFLAVLTEAMLGVPQLYRNHRHQSTEGMr|GHKRKLNEED	.
TALL079	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	33	22	12	119	156	high	.	.	duplicates(3),low_entropy(4),mismappers(3),mismatches(10)	GCCTCTTTTATTTACGAGAAGAAATCTCCCtCTCGGTACTTCTTGGCTtTTTGG___...CGAAGACACCCGGGCAGCCGTGGAGGCTCCGGCCCGTCCTTGGTCGTCAATTACCTCATTGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC-GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGCCACTCAA___CCTCCAGCGGCCCGTGC	.	.	.
TALL079	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	16	18	6	221	679	high	.	.	duplicates(2),low_entropy(2),mismatches(4)	ATGCCGGCGGCTGTTGTCGGGCCTCCAGCGGGCGGGGCCGTTGGCGGAGCAGAGcGGAGGCGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCCA...CAAGACTGGGACCAGGAAAG___CCAGGTCTAAAATTCAATGGCCCACCACCGCCACCGCCACCACCACCACCCCACTTACTATCATGCTGGCTGCCTCCATTTCCTTCTGGACCACCA___ATAATTCCC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL079	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	2	37	0	123	142	high	.	.	duplicates(1),low_entropy(6),mismappers(1),mismatches(6)	GCCGTCCCGGCTCCGAGGGTGCAGCGCGCCCGGGCGCAGCGCGAGTGCGTGGAGCCGGGCTCCAGCACGACCCCGCCGCTCGGGTTTGGGTGTCCTCAGGCTCCGCGCTCCTCCTCCCCTCCTCC...CAAAACTCCCGGGCTCCAGAGATCCTCCTTCCTCAACCTCCCAAAATGCTGGGATTACAG___...CAG___CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGA...ACAGCAACtTCTaCCGCTGGGAAACTCTG	.	.	.
TALL079	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	6	23	9	261	125	high	.	.	duplicates(3),low_entropy(12),mismatches(11)	GGAGAACCGGCCGCTGCCCGCCCTGCAGGTGCCCGAGCCGCAGGGTGCGCCCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGC...G___...TCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAAACTCTG___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCCTCATTCCCAATGCCATCCAAGTTTGCACTGATTCAGAAAAG___CACTTCTTCACTTCGTTTGGGGCCCGG	.	.	.
TALL079	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123577367	splice-site	splice-site	deletion/read-through	downstream	upstream	1	3	9	261	142	medium	.	.	duplicates(1),low_entropy(1),mismatches(1)	TCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACAC	.	.	.
TALL079	SSBP3	DHCR24	-/-	-/-	1:54404576	1:54883773	splice-site	splice-site	duplication	upstream	downstream	9	3	5	213	39	high	.	.	duplicates(1),mismatches(1)	CGGATGGGCAGGCTCGGGAAAA___GTTAGCTTTATACGTCTACGAATATTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAG___ATTCGATGGGAAAAAAACATCACGTTGGGAGAACCGCCTGGGTTTTTGCACTCGTGGTGGTG|GTGCGGGAATGGAAGGAGCAGGGTAGCAAGACCTTCATGTGCACGGGGCGCCCTGGCTGGCTCACTGTCTCACTACGTGTCGGGAAGTACAAGAAGACACACAAAAACATCATGATCAACCTGATGGACATTCTGGAAGTGGACACCAAGAAACAG___ATTGTCCGTGTGGAGCCCTTGGTGACCATGGGCCAGGTGACTGCCCTGCTGACCTCCATTGGCTGGACTCTCCCCGTGTTGCC	out-of-frame	DGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWw|cgngrsrvarpscargalagslshyvsgstrrhtkts*	.
TALL079	AC114730.2	RTP5	+/+	+/+	2:241844478	2:241871714	splice-site	splice-site	deletion/read-through	downstream	upstream	3	9	2	69	81	high	.	.	low_entropy(2),mismappers(1),mismatches(2)	GGCGGCGACACAGGCCCGGGGCCAGCCGGGGACGGAAAAAGTGAGTGCGCGGCGGCGCGGGGCGGCCTGACGGGAAGGCGGGAGGCGAAGTGCTGACTGCGCCGCGGTCTCTCAGCCGCCAACACACCGCGGACGCCCGGGGACAGCGACCGCTTCCTCCCTCCCCGCCCGCCTTGTCTCTTTTT|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGTGCAGGCTGTGCCCCGCACCCGGGGACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCTGGTCTTGCACATCCTGCAGGACTGCTACGGGGATGGCCCCGGCCCAGCCCGGCACCCCAGGGAGGCCTATGAGGGCTGCTGTGAGGCCTGTGAGCTGGG...___CATCTTCACCAACACCCTCTCGGAGCCCACCGATGGCCCTGTGGCCACTAAAGAG	.	.	.
TALL079	RUNX1	EVX1	-/-	+/+	21:35048842	7:27245048	splice-site	splice-site	translocation	upstream	upstream	4	5	3	202	44	high	.	.	.	TGGGGAGTCCCAGAGGTATCCAGCAGAGGGGAGAAGAAAGAGAGATGTAGGGCTAGAGGGGTGAGGCTGAAACAGTGACCTGTCTTGGTTTTCGCTCCGAAGGTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAG|GGTCCGGCTCCGAGGCGCTGGTCGGCAGTCCGAACGGAGGGAGCGAGACCCCCAAGAGCAACGGCGGCAGTGGTGGGGGCGGCTCGCAAGGCACCCTGGCGTGCAGCGCCAGTGACCAGATGCGTCGTTACCGCACCGCCTTCACCCGAGAGCAGATTGCGCGGCTGGAGAAGGAATTCTACCGGGAGAACTACGTATCCAGGCCGCGGAGATGTGAGCTGGCGGCCGCCCTAAAC	in-frame	MASDSIFESFPSYPQCFMR|gSGSEALVGSPNGGSETPKSNGGSGGGGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAAL	.
TALL079	PRDM16	SKI	+/+	+/+	1:3069296	1:2302978	splice-site	splice-site	duplication	downstream	upstream	1	6	3	75	291	high	.	.	duplicates(1)	TTGCAAAGTTTTTTTGGCCCCGGCGAGGGGTGTCAGATTGAGTGCTCTGTGCGCATGTGCGAAGGTGTCCAAACTGACAATGCTGGGGAGATGAAGATAGTGTGTGGCTGCTTCTGGACTCAAGGAGGAGGAGAGAGATTCCGCGAGCCGACACCATGCGATCCAAGGCGAGGGCGAGGAAGCTAGCCAAAA|GTCTCCTCTGAGCCTCCGGCCTCCATAAGACCCAAAACAGATGACACCTCTTCCCAGTCCCCCGCGCCTTCCGAAAAGGACAAGCCGTCCAGCTGGCTGCGGACCTTGGCCGGCTCTTCCAATAAG___AGCCTGGGCTGTGTTCACCCTCGCCAGCGCCTCTCTGCTTTCCGACCCTGGTCCCCCGCAGTGTCAGCGAGTGAGAAAGAGCTCTCCCCACACCTCCCGGCCCTCATCCGAGACAG___CTTCTACTCCTACAAGAGCTTTGAGACAGCCGTGGCGCCCAACGTGGCCCTCGCACCGCCGGCCCAGC	out-of-frame	MRSKARARKLAK|sll*	.
TALL079	RUNX1	RPL35P4(11047),HNRNPA1P73(47882)	-/-	./+	21:35048842	7:27280725	splice-site	intergenic	translocation	upstream	upstream	3	4	2	202	14	high	.	.	inconsistently_clipped(1)	CAACCACAGAACCACAAGTTGGGTAGCCTGGCAGTGTCAGAAGTCTGAACCCAGCATAGTGGTCAGCAGGCAGGACGAATCACACTGAATGCAAACCACAGGGTTTCGCAGCGTG___...TGAAACAGTGACCTGTCTTGGTTTTCGCTCCGAAGGTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAG|GACTCCTCCATTTCTGTGCTGAGAACAATTTCTTCTAGTATTAATGAATTTACCTCTCATCCCTGAAGATAAGTGTCCCATTGGAGAGAGACATGAGCAAGATTTGTGGACTCTAATGAACTTGCAAAAGAGAAATGAGGCAAATATTTTATAATAGAAAGATACTAAGACATCCGATTCTTGAATATGCAG___ACAATCATAATGGATGAAGTAAAAGGGTCCTTCTGACATCTGCTATCTGTTGCCAA___GCAAGACCAGAGCTTTTGCCTCACCACTGACCTTGCCCCACTACTGAG	out-of-frame	MASDSIFESFPSYPQCFMR|gllhfcaennff*	.
TALL079	NKD2	LPCAT1	+/+	-/-	5:1009560	5:1501603	splice-site	splice-site	inversion	downstream	downstream	6	1	1	488	207	high	.	.	duplicates(1)	CCCACCTaCGCCCCGCGGCCGTACCTGGCGCCCCCTGGCTCCCCCGGCCCCCGCGCGGCGTGGAGCCATCTTCCCTCACCTCCTACCGGCACCCTAGCTTGCTCCCGGCCCATGCGGCCCCCGCGGGCTCCCGGCCCCGGCTTCAGAACTCAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GTGGCCCTCATGACACTGACGCTCTTCCCGGTCCGGCTCCTGGTTGCCGCTGCCATGATGCTGCTGGCCTGGCCCCTCGCACTTGTCGCATCCCTGGGCTCTGCGGAGAAGGAACCCGAGCAGCCCCCGGCCCTGTGGAGGAA___GGTTGTGGACTTCCTG...ATGCGCACCATGTGGTTCGCCGGCGGCTTCCACCGGGTGGCCGTGAAGGGGCGGCAGGCGCTGCCCACCGAGGCGGCCATCCTCACGCTCGCaCCTCACTCGTCCTACTTCGACGCCATCCCTG	in-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|VALMTLTLFPVRLLVAAAMMLLAWPLALVASLGSAEKEPEQPPALWRKVVDF	.
TALL079	NKD2	LPCAT1	+/+	-/-	5:1009082	5:1501603	splice-site	splice-site	inversion	downstream	downstream	1	0	0	504	207	low	.	.	.	CCCGCGCGGCGTGGAGCCATCTTCCCTCACCTCCTACCGGCACCCTAGCTTGCTCCCGGCCCATGCGGCCCCCGCGGGCTCCCGGCCCCGGCTTCAGAACTCAGCCCTGCACCTG...ACTGCAGTCGAAGCACG|GTGGCCCTCATGACACTGACGCTCTTCCCGGTCCGGCTCCTGGTTGCCGCTGCCATGATGCTGCTGGCCTGGCCCCTCGCACTTGTCGCATCCCTGGGCTCTGCGGAG	out-of-frame	LQSKH|ggphdtdalpgpapgcrchdaaglaprtcripglcg	.
TALL079	NKD2	LPCAT1	+/+	-/-	5:1009560	5:1483486	splice-site	splice-site	inversion	downstream	downstream	0	1	0	488	638	low	.	.	.	CGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GTGCATTCATCCCTGGAGCGCCCGTCCAGCCTGTGGTTTTACtATATCCAAATAAACTG___GACACCATCACATGGACGTGGCAAGGACCTGGAGC___GCTGGAAATCCTGTGGCTCACGCTGTGTCAGTTTCACAACCAAGTGGAAATCGAG	out-of-frame	RKGAEEAERRARDKQ|vhsslerpsslwfyyiqinwtpshgrgkdlerwkscgsrcvsfttkwks	.
TALL079	RUNX1	HOTTIP(8156),RP1-170O19.17(23828)	-/-	./+	21:35048842	7:27215415	splice-site	intergenic	translocation	upstream	upstream	5	2	0	202	26	high	.	.	.	GCA??????????TC?GAACCCAGCATAGTGGTCAGCAGGCAGGACGAATCACACTGAATGCAAACCACAGGGTTTCGCAGCGTG___GTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAG|CTCATTCAAAAGAGCCCATAGAAACACAGAGAGACCCATGAGGAGTCTCTTGCCACTGGGACTGACTCTGCCTGGGACCCAGAGACCAGAAATG___GCAAGACCAGAGCTTTTGCCTCACCACTGACCTTGCCCCACTACTG	out-of-frame	MASDSIFESFPSYPQCFMR|ahskepietqrdp*	.
TALL079	RP13-580F15.2	RP13-580F15.2	-/.	-/.	17:4482895	17:4483875	intron	intron	duplication	upstream	downstream	4	2	0	57	49	high	.	.	.	.	.	.	.
TALL079	SLC12A7	LPCAT1	-/-	-/-	5:1093533	5:1501603	splice-site	splice-site	duplication	upstream	downstream	1	0	4	353	207	high	.	.	.	TCCTCAACAATGTCGAGGTGGAACAAGAGAGCTTCTTTGAAGGGAAGAACATGGCACTTTTCGAG___GAGGAGATGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACGAGGAGAGCCGGCGGCGGGAGGCCAAG|GTGGCCCTCATGACACTGACGCTCTTCCCGGTCCGGCTCCTGGTTGCCGCTGCCATGATGCTGCTGGCCTGGCCCCTCGCACTTGTCGCATCCCTGGGCTCTGCGGAGAAGGAACCCGAGCAGCCgCCGG	in-frame	LNNVEVEQESFFEGKNMALFEEEMDSNPMVSSLLNKLANYTNLSQGVVEHEEDEESRRREAK|VALMTLTLFPVRLLVAAAMMLLAWPLALVASLGSAEKEPEQPP	.
TALL079	SLC12A7	LPCAT1	-/-	-/-	5:1111868	5:1501603	splice-site	splice-site	duplication	upstream	downstream	1	1	3	452	207	high	.	.	.	GACGGGGACTGTCGGCTGCAGGCGGCCATGCCCACCAACTTCACCGTGGTGCCCGTGGAGGCTCACGCCGACGGCGGCGGGGACGAGACTGCCGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGG|GTGGCCCTCATGACACTGACGCTCTTCCCGGTCCGGCTCCTGGTTGCCGCTGCCATGATGCTGCTGGCCTGGCCCCTCGCACTTGTCGCATCCCTGGGCTCTGCGGAGAAGGAACCCGAGCAGCCCCCGGCCCTGTGGAGGAA___GGTTGTGGACTTCCTG	out-of-frame	MPTNFTVVPVEAHADGGGDETAERTEAPGTPEGPEPERPSP|ggphdtdalpgpapgcrchdaaglaprtcripglcgegtraapgpveegcglp	.
TALL079	SLC12A7	LPCAT1	-/-	-/-	5:1094154	5:1501603	splice-site	splice-site	duplication	upstream	downstream	1	0	3	497	207	medium	.	.	.	CCGAGCCCGAGCGCCCCAGCCCGG___GAGATGGAAATCCAAGAGAAAACAGCCCATTCCTCAACAATGTCGAGGTGGAACAAGAGAGCTTCTTTGAAGGGAAGAACATGGCACTTTTCGAG|GTGGCCCTCATGACACTGACGCTCTTCCCGGTCCGGCTCCTGGTTGCCGCTGCCATGATGCTGCTGGCCTGGCCCCTCGCACTTGTCGCATCCCTGGGCTCTGCGGAGAAGGAACCCGAGCAGCCgCCGG	in-frame	EPERPSPGDGNPRENSPFLNNVEVEQESFFEGKNMALFE|VALMTLTLFPVRLLVAAAMMLLAWPLALVASLGSAEKEPEQPP	.
TALL079	RUNX1	HNRNPA1P73(3271),AC004009.3(29038)	-/-	./+	21:35048842	7:27332805	splice-site	intergenic	translocation	upstream	upstream	1	0	3	202	29	high	.	.	.	CAACCACAGAACCACAAGTTGGGTAGCCTGGCAGTGTCAGAAGTCTGAACCCAGCATAGTGGTCAGCAGGCAGGACGAATCACACTGAATGCAAACCACAGGGTTTCGCAGCGTG___GTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAG|GCAAGACCAGAGCTTTTGCCTCACCACTGACCTTGCCCCACTACTGAGGAAAACTTCTTTTGAGAACTCTACCAAATGCCCTTTCAATTATGAGATTCTTCACTCTGGCTGGTGGAACAGAAACGATTCCTGGCCCCAAATGATTTCTGGAGATT	out-of-frame	MASDSIFESFPSYPQCFMR|gktrafaspltlphy*	.
TALL079	PQLC1	CTDP1	-/-	+/+	18:79943329	18:79695225	splice-site	splice-site	inversion	upstream	upstream	1	0	3	388	226	high	.	.	duplicates(1)	TACGTCCCGCAGTATCGGGtCATTCGCAGGACGCAGAACGCCGACGGCTTCTCCACCTACGTGTGCCTGGTGCTGCTGGTGGCCAACATaTTGCGGATACTCTTCTG___GTTTGGAAGGCGCTTTGAGTCCCCGCTGCTGTGGCAGAGCGCCATCATGATCCTGACCATGCTGCTGATGCTGAAGCTGTGCACCGAGGTCCGTGTGGCCAACGAGCTCAACGCCAGGCGCCGCTCCTTTACAG|AGCGGTTCTGGTGAGGTTGGAAGGATGCAGCCACCCGGTTGTCATGAAAGGCCTGTGTGCTGAATGTGGCCAAGACCTCACCCA___GTTGCAGAGTAAGAACGGGAAGCAGCAGGTGCCGCTGTCCACGGCGACCGTGTCCATGGTGCACAGCGTGCCGGAGTTGATGGTGAGCTCCGAG___GAGTTGCTGGGGCACTGTGGGTCAGCGG	out-of-frame	YVPQYRvIRRTQNADGFSTYVCLVLLVANILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT|erfw*	.
TALL079	PQLC1	CTDP1	-/-	+/+	18:79919184	18:79695225	splice-site	splice-site	inversion	upstream	upstream	0	1	3	230	226	high	.	.	duplicates(1)	CTGGGCTTCCTGGCTGTGCTGACCGAAGCCATGgTGGGTGTGCCCCAGCTTTACCGCAACCACCGCCACCAGTCCACGGAGGGCATGAG|AGCGGTTCTGGTGAGGTTGGAAGGATGCAGCCACCCGGTTGTCATGAAAGGCCTGTGTGCTGAATGTGGCCAAGACCTCACCCA___GTTGCAGAGTAAGAACGGGAAGCAGCAGGTGCCGCTGTCCACGGCGACCGTGTCCATGGTGCACAGCGTGCCGGAGTTGATGGTGAGCTCCGAG___GAGTTGCTGGGGCACTGTGGGTCAGCGG	in-frame	LGFLAVLTEAMvGVPQLYRNHRHQSTEGMr|AVLVRLEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEellghcgsa	.
TALL079	PQLC1	CTDP1	-/-	+/+	18:79933969	18:79728907	splice-site	splice-site	inversion	upstream	upstream	1	0	1	159	107	medium	.	.	.	GGCCGCGGCCATGGTCTTCGGAGGGGTGGTGCCCTACGTCCCGCAGTATCGGGACATTCGCAGGACGCAGAACGCCGACGGCTTCTCCACCTACGTGTGCCTGGTGCTGCTGGTGGCCAACATTT...AGCTGCAGATAGCAAGGATGAAGAAGTCAAGGTTGCCCCCAGGCGGTCCTTCCTGG|AGCGGTTCCGCCACCCCAGCCGCAGATGTTTGGTGAAGAGCTGCCTGACGCTCAGGACGGAGAGCAG	out-of-frame	AADSKDEEVKVAPRRSFL|erfrhpsrrclvkscltlrtes	.
TALL079	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	9	11	8	86	36	medium	.	.	duplicates(1),low_entropy(1),mismatches(2)	CCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCAC	.	.	.
TALL079	SLC12A7	NKD2	-/-	+/+	5:1093533	5:1032152	splice-site	splice-site	inversion	upstream	upstream	0	6	4	353	458	medium	.	.	.	CCATTCCTCAACAATGTCGAGGTGGAACAAGAGAGCTTCTTTGAAGGGAAGAACATGGCACTTTTCGAG___GAGGAGATGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACGAGGAGAGCCGGCGGCGGGAGGCCAAG|GAGCTGCCCAATGGGGACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTACAGG___TGGCACTCCCCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGGGACAACTCCTCAGCGCAGATGACGGAGAGAGGGCAGCAAACCGCGAGGGCCCGCGAGGACCGGGCGGGCAGCGCCTCAACATTGAC___GCACTCCAGTGCGATGTCTCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCAC	in-frame	PFLNNVEVEQESFFEGKNMALFEEEMDSNPMVSSLLNKLANYTNLSQGVVEHEEDEESRRREAK|ELPNGDPKEGPFREDQCPLQVALPAEKAEGREHPGQLLSADDGERAANREGPRGPGGQRLNIDALQCDVSVEEDDRQEWTF	.
TALL079	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1053482	splice-site	splice-site	inversion	downstream	downstream	5	2	1	488	706	medium	.	.	inconsistently_clipped(1)	CCGCGCCCTGCGCCCGGTGGCCCCCCACCTCCGCCCCGCGGCCGTACCTGGCGCCCCCTGGCT-CCCCGGCCCCCGCGCGGCGTGGAGCCATCTTCCCTCACCTCCTACCGGCACCCTAGCTTGCTCCCGGCCCATGCGGCCCCCGCGGGCTCCCGGCCCCGGCTTCAGAACTCAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GGACCAGTCCAACGTCAGGCGGATGCACACGGCTGTGAAGCTCAATGGCGTCGTCCTCAACAAGTCCCAGGATGCGCAGCTGGTCCTGCTCAACATGCCAGGTCCTCCCAAAAACCGGCAGGGAGACGAGAACT___ACATGGAGTTTCTTGAAGTCCTGACCGAGGGGCTGAACAGAGTCCTCCTGGTCAGGGGTGGCGGCCGGGAGGTGATCACCATCTACTCCTAATGCCCAACAGCATCACGG	out-of-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|gpvqrqadahgceaqwrrpqqvpgcaagpaqharssqkpagrrelhgvs*	.
TALL079	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1094248	splice-site	splice-site	inversion	downstream	downstream	2	0	4	488	450	medium	.	.	duplicates(1)	CAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GAGATGGAAATCCAAGAGAAAACAGCCCATTCCTCAACAATGTCGAGGTGGAACAAGA	out-of-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|emeiqektahsstmsrwnk	.
TALL079	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1079496	splice-site	splice-site	inversion	downstream	downstream	2	0	3	488	178	medium	.	.	duplicates(1)	CCGCGCCCTGCGCCCGGTGGCCCCCCACCTCCGCCCCGCGGCCGTACCTGGCGCCCCCTGGCTCCCCCGGCCCCCGCGCGGCGTGGAGCCATCTTCCCTCACCTCCTACCGGCACCCTAGCTTG...CCGGCCCATGCGGCCCCCGCGGGCTCCCGGCCCCGGCTTCAGAACTCAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GTATCATGGCGGGTTCAAACCGGTCCGGGGACCTCAAGGATGCACAGAAGTCCATCCCCACGGGGACCATCCTGGCCATAGTGAC	out-of-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|vswrvqtgpgtsrmhrspsprgpswp*	.
TALL079	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1065478	splice-site	splice-site	inversion	downstream	downstream	1	2	2	488	383	medium	.	.	duplicates(1)	GCGGCCCCCGCGGGCTCCCGGCCCCGGCTTCAGAACTCAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|AACATACGGTCCCTAATGAGCACAGAGAAGACCAAGGGCTTCTGCCAGCTGGTGGTCTCGTCCAGCCTGCGGGATGGCATGTCCCACCTGATCCAGTCGGCCGGCCTGGGCGGCCTGAAGCACAACACGGTGCTCATGGCCTGGCCCGCATCCTGGAAGCAGGAGGACAACCCCTTCTCCTGGAAGAACTTTGT	in-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|NIRSLMSTEKTKGFCQLVVSSSLRDGMSHLIQSAGLGGLKHNTVLMAWPASWKQEDNPFSWKNF	.
TALL079	SLC12A7	NKD2	-/-	+/+	5:1111868	5:1032152	splice-site	splice-site	inversion	upstream	upstream	0	2	2	452	458	medium	.	.	.	GGGGACTGTCGGCTGCAGGCGGCCATGCCCACCAACTTCACCGTGGTGCCCGTGGAGGCTCACGCCGACGGCGGCGGGGACGAGACTGCCGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGG|GAGCTGCCCAATGGGGACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTACAGG___TGGCACTCCCCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGGGACAACTCCTCAGCGCAGATGACGGAGAGAGGGCAGCAAACCGCGAGGGCCCGCGAGGACCGG...TGCGGGAACACGTCCCTGGGGCCGGGGGCTCAGGGACAGGCATGTGTTGCCCTAAACTGGGCATCTGTGGACACGGCGTAGTTCACTCAGTCTTCCCCACAGTTCACCCCGTTTAAGGCATTGA	out-of-frame	MPTNFTVVPVEAHADGGGDETAERTEAPGTPEGPEPERPSP|gaaqwgpqggafpggpvsptggtpr*	.
TALL079	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1076812	splice-site	splice-site	inversion	downstream	downstream	1	0	3	488	220	medium	.	.	duplicates(1)	CAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GTGTTTGGCCACGGGAAGGCCAACGGGGAGCCCACGTGGGCGCTGCTGCTGACAGTCCTCATCTGCGAGACTGGCATCCTCATCGCCTCTCTGGACAGCGTGGCCCCGATCCTCTCCAT___GTTCT	in-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|VFGHGKANGEPTWALLLTVLICETGILIASLDSVAPILSMF	.
TALL079	NKD2	SLC12A7	+/+	-/-	5:1009214	5:1065478	splice-site	splice-site	inversion	downstream	downstream	0	0	0	512	383	low	.	.	mismatches(1)	TGCCGCCGCTGTCCCCGCGCCCTGCGCCCGGTGGCCCCCCACCTCCGtCCCGCGGCCGTACCTGGCGCCCCCTGGCTCCCCCGGCCCCCGCGCGGCGTGGAGCCATCTTCCCTCACCTCCTACCG...ACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG|AACATACGGTCCCTAATGAGCcCgGA	out-of-frame	MGKLQSKHAAAARKRRESPE|ehtvpnep	.
TALL079	POLR2B	POLR2B	+/.	+/.	4:57006535	4:57007172	intron	intron	duplication	upstream	downstream	3	0	6	161	163	medium	.	.	.	.	.	.	.
TALL079	NEU4(26920),AC114730.2(47)	RTP5	./+	+/+	2:241844333	2:241871714	intergenic	splice-site	deletion/read-through	downstream	upstream	1	5	2	45	81	medium	.	.	mismatches(1)	TCCTGAAGCCGCCGCAGCTGCTGTGCGAGGCCGGGCCGACCCGCCTGGGGCGCGTGGGTGGGGCGGGAGCGCAGCCGCAGCCCGGCGGCGACACAGGCCCGGGGCCAGCCGGGGACGGAAAAA|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGTGCAGGCTGTGCCCCGCACCCGGGGACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCTGGTCTTGCACATCCTGCAGGACTGCTACGGGGATGGCCCCGGCCCAGCCCGGCACCCCAGGGAGGCCTATGAGGGCTGCTGTGAGGCCTGTGAGCTGGGGGTCTGCTTCCTCCAGAAGGCCCCAGACCCCG	.	.	.
TALL079	LATS2(16772),RPS12P23(15999)	SAP18	./+	+/+	13:21078319	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	3	2	2	42	1337	medium	.	.	duplicates(2),low_entropy(6),mismatches(4)	AAATGGTCATCTCCCAACAGCCTCTCTGGACCtCTGCCTGCAAGCCCGGCCCACACATCTTGGACCCAGGCTGGAGACACAGACAGCCAGGTGgTGATGCCCACGCGCAGCTCCAAGACCCCGGGGAGCCTCCGCCAGGCCGGAACCTGCGCCAGGCTTCTCTGGAACCTTCTCTCCAGGACGCTCTTCTGCGGTTACTGAAAAAGGGAGTCTACATGAATTAATAAGTGAAG|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTTGCAGATCTACACTTG___GATGGATGCAACtTTGAAAGAACTGACAAGCTTAGTAAAAGAAGTCTACCCAGAAGCTAGAAAGAAGGGCACTCACTTCAATTTTGCAATCGTTTTTACAGATGTTAAAAGACCTGGCTATCG___AGTTAAGGAGATTGGCAGCACCATGTCTGGCAGAAAG	.	.	.
TALL079	IPPKP1(10925),FAS-AS1(10975)	SAP18	./+	+/+	13:21115296	13:21140886	intergenic	splice-site	deletion/read-through	downstream	upstream	2	5	0	32	1337	medium	.	.	duplicates(1),mismatches(2)	TGGAAATGGTCATCTCCCAACAGCCTCTCTGGACCtCTGCCTGCAAGCCCGGCCCACACATCTTGGACCCAGGCTGGAGACACAGACAGCCAGGTGgTGATGCCCACGCGCAGCTCCAAGACCCC...CGTTAATCTGCAATGAAGTCATCACAT___GCAACAAGAAATCAACATTCTGTTAGCCAGGAAGAAGGCCCTCACCAAGAACTCCAGCCATGCTGACATCCTGATCTCTGACTTTCAGGTTCCAGACCT|ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTACCGTCCAGCGAGTTGCAGATCTACACTTG___GATGGATGCAACtTTGAAAGAACTGACAAGCTTAGTAAAAGAAGTCTACCCAGAAGCTAGAAAGAAG...TGCAATCGTTTTTACAGATGTTAAAAGACCTGGCTATCG___AGTTAAGGAGATTGGCAGCACCATGTCTGGCAGAAAGGGGACTGATGATTCCATGACCCTGCAGTCGCAGAAGTTCCAGATAGGAGATTACTTGGACATAGCAATTACCCCTCtAAATCGGGCACCACCTCCTTCAGGG	.	.	.
TALL079	OAZ1	TCF3	+/+	-/-	19:2269744	19:1650287	splice-site	splice-site	inversion	downstream	downstream	3	1	2	1294	192	medium	.	.	.	TTTTGCGAACGGCGAGCAGCGGCGGCGGCGCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATG___ATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGGCCCGCCTCCCTGGCCGGGGCGCAGTTCGGAGGTTCAG___GTCTTGAGGACCGGCCCAGCTCAGGCTCCTG	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|vsrpevpalapge*	.
TALL079	POLE	FUS	-/-	+/+	12:132687254	16:31188325	splice-site	splice-site	translocation	upstream	upstream	0	6	0	102	1975	medium	.	.	.	GCGGCGGCGCGCGGACCCAGGCGCGGATGGCGAGGCCAGCAG|GCCCTCGGGACCAAGGATCACGTCATGACTCCG___AACAGGATAATTCAGACAACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACAATTGAGTCTGTGGCTGATTACTTCAAGCAGATTGGTATTATTAAG___ACAAACAAGAAAACGGGACAGCCCATGATTAATTTGTACACAGACAGGGAAACTGGCAAGCTGAAGGGAGAGGCAACGGTCTCTTTTGATGACCCACCTTCAGCTAAAGCAGCTATTGACTGGTTTGATG___GTAAAGAATTCTCCGGAAATCCTATCAAGGTCTC	out-of-frame	RRRADPGADGEASr|psgprits*	.
TALL079	PSMD13	PSMD13	+/+	+/+	11:247590	11:245150	exon	intron	duplication	downstream	upstream	0	2	4	67	25	medium	.	.	.	TATCAAACAATCGGAAACCACGCGTCCTACTACAAAGATGCTCTGCGGTTTTTGGGCTGTGTTGACATCAAGGATCTACCAGGTAACCTAGGCCATTAAATCCATGTCACACAGGAGCATATTCTCCAAACTTAGCATCTGTGAGTTGCTTGAGGTGACAGTTCTCAGAAATTACTAAGGTGGGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTG|CCAGGCTGGTCTGGAACTCCTGACCTCAAGTGATCCCTCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGCCGTGAGCCGCTGCGCCCAGCCCCCCCGATTGCTAACCTTTTACCGCTTTTGCCTTTGTGTGTGTCTGTAGCTTTTTTCCAAAACCACTTAGGAGTAAGTTGCTGATACAATGCCTGTTGCCCTTAAACAAAAGAGCACTC	out-of-frame	YQTIGNHASYYKDALRFLGCVDIKDLPgnlgh*ihvtqehilqt*hl*va*gdssqkllrwgwarwltpvipalc|qaglelltssdpsasasqsagitavsrcaqpprlltfyrfclcvcl*	.
TALL079	GAS6-AS1	RASA3	+/+	-/-	13:113815691	13:114052155	splice-site	splice-site	inversion	downstream	downstream	0	6	0	71	228	medium	.	.	.	GTGCCTTTTGCCTCCCACCGTGATTCTGAGGCCTCCCCAACCATGTGCAATT|CCCGTTTTACGGAGAAGACTTTTACTGTGAAATTCCTCGGAGCTTTCGTCACCTGTCCTTCTACATTTTCGATAGAGACGTTTTCCGGAGGGATTCCATCATAG___GGAAGGTGGCCATCCAGAAGGAGGACTTGCAGAAGTACCACAACAGGGACACCTGGTTCCAGCTGCAGCACGTGGACGCTGACTCGGAAGTGCA...___CATCGTCGAGTGCCAGGGCCTCCCCATCGTGAATGGGCAATGTGACCCCTACGCCACCGTGACGCTGGCAGGACCCTTCAG___ATCAGAAGCAAAGAAGACGAAAG	.	.	.
TALL079	SPNS3	RP13-580F15.2	+/.	-/.	17:4482895	17:4483875	intron	intron	duplication/3'-3'	upstream	downstream	4	2	0	57	49	medium	.	.	.	.	.	.	.
TALL079	CNN2	CNN2	+/+	+/+	19:1038729	19:1035748	3'UTR	intron	duplication	downstream	upstream	0	2	4	550	44	medium	.	.	.	GAAATTCTGAGTTGTTGGGGCTAAGCCTGACCCCCTCTCCATGCTCCCCGCCCCAAC?CACTCTGGCCTCAGTAGATTTTTTTTTCAGTTGTGGTTGTTGCCCAGGCTGGAGTGCAGTGGCGCCATCTTGGCTCACTGCACCTCCACCTTCCGGGCTCAAGCGATTCTCCAGCCTCAGCCTCCTGAGTAGCTAGGACTGCAGGTGCTCCACCACG|CCCtTCTCTACTAAAAATACAAAAATTAGCCTGGCGTGGT...GCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGAGGGGGTTGCAGTGAGCGGAGATCACACCACTGCACTCCAGCCTGGGTGACAGAGCCAGACTCCATCTCAAAAATAAAAATAAAAAACTGAAACAGCTGTATGATGGaTGTGTGGAGTGTGTGGAGTCCCAGA	.	.	.
TALL079	OAZ1	SBNO2	+/+	-/-	19:2269744	19:1154402	splice-site	splice-site	inversion	downstream	downstream	1	1	3	1294	80	medium	.	.	.	CGCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|ATCATGATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCGGGTCCTGGAGTCCCGCCGCCTGCTGCCCGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTGCAGTGGGGCCCGCCATGGACAGGGATTACCCGCAGCATGAACCCCCGCCGGCGGGCAGCCTCCTGTACAGCCCGCCGCCCCTGCAG___AGCGCCATGCTGCACTGCCCCTACTGGAACACCTTCTCGCTGCCGCCATACCCTGCC	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|s*	.
TALL079	PTBP1	DAZAP1	+/+	+/+	19:799443	19:1417500	splice-site	splice-site	deletion	downstream	upstream	0	4	1	1492	480	medium	.	.	.	GTCGGTTCCTGCTATTCCGGCGCCTCCACTCCGTCCCCCGCGGGTCTGCTCTGTGTGCCATGGACGG___CATTGTCCCAGATATAGCCGTTGGTACAAAG|GAAGCTCTTCGTGGGCGGTCTTGACTGGAGCACGACCCAAG___AGACTCTGCGCAGCTACTTTTCCCAATATGGAGAAGTCGTAGATTGTGTTATCATGAAAGATAAAACCACCAACCAGTCTCGAGGCTTTGGGTTTGTCAAATTTAAAGACCCAAACTGTGTGGGGACGGTGCTGGCCAGCAGACCGCACACGCTAGATGGCCGAAAC___A	out-of-frame	MDGIVPDIAVGTK|ealrgrs*	.
TALL079	SMCR8	SMCR8	+/+	+/+	17:18325845	17:18318609	3'UTR	intron	duplication	downstream	upstream	1	1	3	140	26	medium	.	.	.	GTGACTAGTGTTTAGCTCCCAGATTTATATTTGGGTTAAAAACTAACTTTTCAATGTGGCAGTTTCAAAGGATTACTTGATGCAAAGTATGTTTCCTTTCAAAGGGATCTTGACGTGGTACCAGG...GTCATGATTTGGGCAGAGGCAGTTAACACTGGGAAGCCCTGCCCCTCCCTATGCCCCCTTCACTCCGGGGAACTGAAACCTACTCTGAGTCTCACATCTCTAAACCTCAGTGCTGAGACCTATGCAGTGGGACTAATCTCATCAAGAATTTTCAGTTGAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGTGGGCGGATCACCTGA|GGCCAGGCTGGTCTGGAACTCCTGACCTTAGGTGGTCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCGGAAAGTTTTTAAAATCATGGATTCCTGAGTCACAAGCCCTCGAGGTTCTGATTCGGTTGGTGTGAGGTAAGACATGGAATTTATCTGTCGCCATTGCCAGCCCGAC	.	.	.
TALL079	SOD1	SOD1	+/.	+/.	21:31661631	21:31662728	exon	intron	duplication	upstream	downstream	0	2	3	17	21	medium	.	.	.	.	.	.	.
TALL079	LLfos-48D6.2	SBNO2	+/+	-/-	19:2269744	19:1154402	splice-site	splice-site	inversion	downstream	downstream	1	1	3	1294	80	medium	.	.	.	CGCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|ATCATGATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCGGGTCCTGGAGTCCCGCCGCCTGCTGCCCGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTGCAGTGGGGCCCGCCATGGACAGGGATTACCCGCAGCATGAACCCCCGCCGGCGGGCAGCCTCCTGTACAGCCCGCCGCCCCTGCAG___AGCGCCATGCTGCACTGCCCCTACTGGAACACCTTCTCGCTGCCGCCATACCCTGCC	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|s*	.
TALL079	SBNO2	RNF126	-/-	-/-	19:1174172	19:652884	splice-site	splice-site	deletion	upstream	downstream	0	4	0	93	293	medium	.	.	mismatches(1)	GCCCGAAACCCGGAAGTGAGCGGCGGCAGCTGCGAGGCTCGGAGAAACAGGCGCCGCGGGCTCCGCGCCCGGCCGGACCCGGGCCCGAG|GATTATATCTGTCCAAGATGCGAGTCTGGTTTTATCGAGGAGCTTCCGGAAGAGACCAG___GAGCACAGAAAATGGTTCTGCCCCCTCCACAGCTCCCACAGACCAGAGCCGGCCACCGTTGGAG___CACGTGGACCAGCACCTGTTCACGCTGCCGCAGGGCTACGGACAGTTTGCTTTCGGCATCTTCGATGACAGCTTCGAGATCCCCACGTTCCCTCCTGGGGCGCAGGCTGACGACGGCAGGGACCCTGAGAGCCGGCGGGAGAGAGACCATC	.	.	.
TALL079	NAA16	NAA16	+/+	+/+	13:41376005	13:41373540	3'UTR	intron	duplication	downstream	upstream	1	1	2	179	65	medium	.	.	.	TCTTACTAAGCTAAGTTGTATACAACCCCACTGTATTATTTTCTTTAGATTCTGATTTCAGGATCTGTGCTTTGATTCCTTGTCTGTTTTATCGTATATTTGCTTGCTTTTTAATTAAAGCACATCAGTTTTAAAGTGTTAACTATATGTTAACAATATG|GAGCCACCGCGCCCAGCCATAAAGGGTTTTCAGTAGGTTTTTTTTTTTTCAAAGGACAGATCAAAAACAAAAAATCCAAATGTTTTTGTTTTTATAGTGTCTAATCATAGTAATCTTCCAGACATTGTGAGCAAAGTTCTATCTCAAGAAATGCAGAAAATATTTGTCAAAAAGGATTTGGAAAGTTTTAATGAGGATTTTCTGA	.	.	.
TALL079	LLfos-48D6.2	TCF3	+/+	-/-	19:2269744	19:1650287	splice-site	splice-site	inversion	downstream	downstream	2	1	1	1294	192	medium	.	.	.	GGCGGCGGCGCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|GGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCC...AGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATG___ATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGGCCCGCCTCCCTGGCCGGGGCGCAGTTCGGAGGTTCAG___GTCTTGAGGACCGGCCCAGCTCAGGCTCCTG	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEr|vsrpevpalapge*	.
TALL079	PRDM16	UBE2I	+/+	+/+	1:3069296	16:1314020	splice-site	splice-site	translocation	downstream	upstream	1	2	0	75	1178	medium	.	.	.	CCGGCGAGGGGTGTCAGATTGAGTGCTCTGTGCGCATGTGCGAAGGTGTCCAAACTGACAATGCTGGGGAGATGAAGATAGTGTGTGGCTGCTTCTGGACTCAAGGAGGAGGAGAGAGATTCCGCGAGCCGACACCATGCGATCCAAGGCGAGGGCGAGGAAGCTAGCCAAAA|GGACTTTGAACATGTCGGGGATCGCCCTCAGCAGACTCGCCCAGGAGAGGAAAGCATGGAGGAAAGACCACCCATTT___GGTTTCGTGGCTGTCCCAACAAAAAATCCCGATGGCACGATGAACCTCATGAACTGGGAGTGCGCCATTCCAGGAAAGAAAGGG___ACTCCGTGGGAAGGAGGCTTGTTTAAAC...AAATGAACCAAATATCCAAGACCCAGCTCAAGCAGAGGCCTACACGATTTACTG___CCAAAACAGAGTGGAGTACGAGAAAAGGGTCCGAGCACAAGCCAAGAAGTTTGCGCCCTCATAAGCAGC	in-frame	MRSKARARKLAK|rtlnMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK	.
TALL079	TAF1	TAF1	+/+	+/+	X:71464451	X:71422991	3'UTR	intron	duplication	downstream	upstream	1	1	1	116	7	medium	.	.	.	ATTGCTTTTGGTATAATTTTTCCCTGGGGAAGGAGGGGAAATTATGAAAGAACTAGTAACTTTATGTCCTCTTGATGTATTAGGAAATTTCCGGCCAGGCGTGGTGGCTCACACCTGTAAT|CTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCAAATTGTCCTTAACTTTTCTATGGTGATCACACCTTAGGGAAACCTCTGTCTTGGCTTTGCTTTGTTTAATTTCAGAAAGAAGACAAATTAGCTCGCTTAGAGAAAGCTATCAACCCCTTGCTGGATGATGATGACCAAGTGGCGTTTTCTTTCATTCTGGACAACATTGTCACCCAGAAAATGATGGCAGTTCCAGATGTAAGCTGTCTCTGTGCCAAATACTGTGAGGATCGTGCAGGGGAAAGGAAAAATGTT	.	.	.
TALL079	NCOA2(221),RP11-333A23.1(20099)	NFATC1	./-	+/+	8:70404026	18:79433579	intergenic	splice-site	translocation	upstream	upstream	0	2	0	13	43	medium	.	.	.	TCCCCGGACAACCCTGCGTCCACCTTTGCCCCTTCCTCGGGGGCGCGAGAG|CCCGACCCTGCCCGCCCTGGACTGGCAGCTGCCGTCCCACTCAGGCCCGTATGAGCTTCGGATTGAGGTGC...GACGGAGGGCAGCCGGGGGGCCGTGAAGGCGTCGGCCGGAGGACACCCCATCGTGCAG___CTGCATGGCTACTTGGAGAATGAGCCGCTGATGCTGCAGCTTTTCATTGGGACGGCGGACGACCGCC	.	.	.
TALL079	INPP5A	PWWP2B	+/+	+/+	10:132726905	10:132417061	splice-site	splice-site	duplication	downstream	upstream	1	0	1	129	61	medium	.	.	duplicates(1)	TGGGAAACAAGCCCTTCCGTGTACTCGGGAATCCGGCACAAGGCACTGGGCTACGTGCTGGACAG___AATCATTGATCAGCGATTCGAGAAGGTTTCCTACTTTGTATTTGGTGATTTCAACTTCCGGCTGGATTCCAAGTCCGTCGTGGAG|GTCACCGACGATGAGGGCGCACCTGCTGTCCTG...AGTGTGTCCAGGGAGGGGATGGCCCTGAGCCCAGCGGCTCCTCCCGCTGAGTGTATTTCTTCCCACCACTCAGCGCATGGCTGCCCTGGCTCACGAGGCAGTCGGGACTCGTGACTTGCTG	out-of-frame	WETSPSVYSGIRHKALGYVLDRIIDQRFEKVSYFVFGDFNFRLDSKSVVE|vtddegapav	.
TALL079	INPP5A	PWWP2B	+/+	+/+	10:132645968	10:132417061	splice-site	splice-site	duplication	downstream	upstream	1	0	0	82	61	low	.	.	.	TCTTGGAGTGTGGGTTGTGGTCCCACGTTCTG___CCAGAAAACCTGCAGAAGAACTGGCTTCGGGAATTTTACCAG___GTCGTGCACACACACAAGCCGCACTTCATGGCCTTGCACTGTCAGGAGTTTGGAGGGAAGAACTACGAGGCCTCCATGTCCCACGTGGACAAGTTCGTCAA|GTCACCGACGATGAGGGCGCACCTGCTGTCCTGGAGCTTCCGATCTCTGTTCGGG	out-of-frame	lecglwshvlPENLQKNWLREFYQVVHTHKPHFMALHCQEFGGKNYEASMSHVDKFVk|sptmrahllswsfrslf	.
TALL079	MAEA	CTBP1	+/+	-/-	4:1327703	4:1238337	splice-site	splice-site	inversion	downstream	downstream	1	0	1	184	251	medium	.	.	.	CGGCCACCTGCCTGGCCTGGTGCCATGACAACAAGTCCCGGCTCCGGAAGATGAAG___AGCTGCCTGGAGTTCAGCCTCAGgATCCAGGAGTTCATTGAACTCATCCGGCAGAATAAGAGACTGGACGCTGTGAG|GCGTCCGACCTCCGATCATGAACGGGCCCC	out-of-frame	ATCLAWCHDNKSRLRKMKSCLEFSLRIQEFIELIRQNKRLDAVr|rptsdhera	.
TALL079	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	14	0	99	26	low	.	.	mismatches(2)	CAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAG...TTTGAATCTTAAGAAAATTTGTCTGGCTACACTCTTTAAGCACCTTCCTGAGCCACCCGTGGCCAGGCTCTGCTGGCCGCATCTGCCTGGCCCCATCTACCTTCCCTGGAAGCACAGGACTCAC	.	.	.
TALL079	IRF1	C5orf56	-/-	+/-	5:132486557	5:132449666	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	4	4	1	639	47	low	.	.	duplicates(2)	TGCAGCCCCTGCGTCGCCGGGACCCTCGCGCGCGACCGCCGAATCGCTCCTGCAGCAGAG___GCCGATACAAAGCAGGGGAAAAGGAGCCAGATCCCAAGACGTGGAAGGCCAACTTTCGCTGTGCCATGAACTCCCTGCCAGATATCGAGGAGGTGAAAGACCAGAGCAGGAACAAGGGCAGCTCAGCTGTGCGAGTGTACCGGATGCTTCCACCTCTCACCAAGAACCAGAGAAAAG___AAAGAAAGTCGAAGTCCAGCCGAGATGCTAAGAGCAAGGCCAAGAGGAAG___TCATGTGGGGATTCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCTCCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGGCTACATGCAGGACTTGGAGGTGGAGCAGGCCCTGACTCCAG|GCTACAAACTCTGGCACCTGCAAAAAACAAGGAAAGTAAATGATTGAAGCAGGGCACTGAAGGTGGGCCTTTGAACAACGCAAGCCTGGATGGAAGTTGAAAGATGAGAGCCCATCTGTGGTGAGTTCTTTGAAAGCTGCTGAGGTGTGAGTTGGTAGGATGCTGGCCCAGGGCAGACACGGG...___GAATTCTTTGGACCTTCTGGATATAAG	out-of-frame	ADTKQGKRSQIPRRGRPTFAVP*TPCQISRR*KTRAGTRAAQLCECTGCFHLSPRTREKKESRSPAEMLRARPRGSHVGIPALIPSLMDSAAPLCLMTTAATQFQATCRTWRWSRP*LQ|atnsgtckkqgk*	.
TALL079	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74456671	splice-site	splice-site	deletion/read-through	upstream	downstream	0	8	0	16	212	low	.	.	mismappers(1),mismatches(1)	AGAAAGGTTGCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|ATCTGATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCATTCAACCTGGGTCCACTGTCCATGTTCTGCGAAAGTCCTGGCCTGAACCTGATCAGAAACCGG___AACCTGTGGACAAAGTGGCTGCCATGAGAGAGTTCCGGGTGTTGCACACTGCCCTGCACAGCAGCTCCTCTTACAGGGAGGCG___GGGTTCTCCA	.	.	.
TALL079	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74458896	splice-site	splice-site	deletion/read-through	upstream	downstream	0	5	0	16	132	low	.	.	.	GAGACAGAAAGGTTGCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|GGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCACCTGGCGGTGAAGCTGGCTGACCAGCCACTTACTCCAAAGTCTATTCTTCGGTTGCCAGAGACAGAACTGGGAGAATACTCGCTAGGGGGCTATAGTATTTCATTTCTGAAGCAGCTTATTGCTGGCAAACTCCAGGAGTCTGTTCCAGACCCTGAGCTGATTG___ATCTGATCTACTGTGGTCGGAAGCTAAAAGA	.	.	.
TALL079	RP11-10O17.1	UBL7	-/-	-/-	15:74490236	15:74450859	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	16	249	low	.	.	.	CAGAAAGGTTGCTGGGAGGCGCCATACCGAGTACAGCCATGGAGACCACT|GGGTTCTCCAGGACAAGGACCTCTTCTCTGTCTTCGCTGATCCCAATATGCTTGATAC___GTTGGTGCCTGCTCACC...ACACACCGACTCCTGGCACCCAG___AGCCAGTGGCAGCCCCAGCTGCAGCAGCTACGTGACATGGGCATCCAGGACGATGAGCTGAGCCTGCGGGCCCTGCAGGCCACCGGTGGaGACATCCAAG	.	.	.
TALL079	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	4	2	1	47	170	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	GGAACCTCAGAAATCCATTGAAGTTCCATTGTTAAGAAGTTCTGTTTGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA___...TTTGCCAGTTCTAAGTACCTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG___GACTGTCTTATTCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGAAG___GGCTGAGGTCCATT	.	.	.
TALL079	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528951	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	39	170	low	.	.	.	TGTTTGGCAACTGCTTTAAACCCGATAGAACAAGATCAGAAGTGGCAGTCTATAACTGA|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCA	.	.	.
TALL079	SMG1P2	RP11-231C14.4	-/-	-/-	16:29528417	16:29495607	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	60	170	low	.	.	.	CTTGTAGCTGTATTGCTCGTTTGCTTTGGAGACCACAGTTTCTAACAGACTTTCAACAGAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTC	.	.	.
TALL079	RP11-98J23.2	SERF1B	+/+	+/+	5:69921244	5:70026407	3'UTR	splice-site	deletion/read-through	downstream	upstream	1	1	4	30	207	low	.	.	low_entropy(1)	GTTGGAGAtCTCATCTGGAATTTTGCCGATTTCATGACTAACCAGT___CCAAGGATGAAGGAAAAACTGGACCTCATTATGGATTTACTTTTGGGATACACTCATTATTCCAGAGGAGGGTAAAAGGCTGAGAAGCTTAAG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCC	.	.	.
TALL079	CTC-550B14.7	EPS8L1	+/+	+/+	19:55006464	19:55081231	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	0	34	21	low	.	.	.	CAGGAAGTGACGTCAAACCAGGATTTGCAGTCGGAGGCAGGCAAGAAGTGAAATCAGAAGACGGGAAGTGGCTGAGGGGAACGTCTTTTCTCTCTCCTGCTCAGCCCGAAGTGAACAGGTAGCATCAG___AGATGAGATCCTGGATTGAATGACTACTATGGAAAGTGATTGACCAAG|GGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCCCGCCGCTGAGACCCCGCCCCTGCAGCGCCGCCCGTCAGTCCGCGCAGTGATCAGCACCGTAGAGCGGGGCGCGGGCCGCGGACGACCCCAGGCGAAGCCCATTCCCGAGGCAGAGGAGGCGCAGAGGCCTGAGCCGGTGGGGACCTCGAGCAACG	.	.	.
TALL079	CTC-550B14.7	EPS8L1	+/+	+/+	19:55006464	19:55079690	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	2	34	18	low	.	.	.	GTGAAATCAGAAGACGGGAAGTGGCTGAGGGGAACGTCTTTTCTCTCTCCTGCTCAGCCCGAAGTGAACAGGTAGCATCAG___AGATGAGATCCTGGATTGAATGACTACTATGGAAAGTGATTGACCAAG|CACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGCATACCGTGGAGGATGCCTCCAGGAAGTTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTCTCCCGACCATGTCACGCTGCTCGACCCGGCCTCCAAG___GAGGAGCTGGAGTCGTACCCACTGGGCGCCATCGTGCGCTGTGACGCGGTGATGCCAC	.	.	.
TALL079	CTC-550B14.7	EPS8L1	+/+	+/+	19:55046898	19:55080129	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	3	17	15	low	.	.	.	CCTGACCAATATGGTGAAACCCCACCTCTAGCTGGGTGTGGTGGTGTGCACCTGTAATCCCAGCTACTTGGAGACAGGAGAATCGCTTGAACCTGGGAGGTGGAAGTTGCAGTGAGTGGAGATCATGCCATTGTACTCCAGCCTGGGCGACAGAGCAAGACTTCATCTCAAAAATAA|GAGGAGCTGGAGTCGTACCCACTGGGCGCCATCGTGCGCTGTGACGCGGTGATGCCACCCGGCAGGAGCCGCTCGTTGCTGCTGCTCGTGTGCCAGGAACCCGAGCGCGCGCAGCCCGACGTGCACTTCTTCCAGGGCCTGCG	.	.	.
TALL079	CTC-550B14.7	EPS8L1	+/+	+/+	19:55046898	19:55081231	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	17	21	low	.	.	mismatches(1)	CCTGACCAATATGGTGAAACCCCACCTCTAGCTGGGTGTGGTGGTGTGCACCTGTAATCCCAGCTACTTGGAGACAGGAGAATCGCTTGAACCTGGGAGGTGGAAGTTGCAGTGAGTGGAGATCATGCCATTGTACTCCAGCCTGGGCGACAGAGCAAGACTTCATCTCAAAAATAA|GGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCCCGCCGCTGAGACCCCGCCCCTGCAGCGCCGCCCGTCAGTCCGCGCAGTGATCAGCACCGTAGAGCGGGGCGCGGGCCGCGGACGAC...CCGAGGCAGAGGAGGCGCAGAGGCCTGAGCCGGTGGGGACCTCGAGCAACGCTGACTCGGCCTCCCCGGACCTGGGTCCCCGGGGTCCTGACCTGGCGGTTCTGCAGGCGGAGCGGGAAGTG___G	.	.	.
TALL079	IL9R	WASH6P	+/+	+/+	X:156004565	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	4	0	2	486	158	low	.	.	duplicates(4),read_through(11)	CTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TTAAGCTGGACCCGCCCTCTGACTTGCAGAGCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCACCGCCCCCACCACCACCCCCAGCTCCTGAGGTGCTGGCCAGTGCAC	out-of-frame	MGLGRCIWEVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|vpenyfyvpdlgqvpeidvpsylpdlpgiandlmyiadlgpgiapsapgtipelptfhtevaeplkadlqdgvltppppppppppapevlasa	.
TALL079	IL9R	WASH6P	+/+	+/+	X:156006188	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	4	237	121	low	.	.	.	CCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACtCTGGCCTGCAG...CCCCGCCACAGGATCCAGAGCAAGCACCGCCCCCTGGACGAGCGGGCCCTGCAG___GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGC	out-of-frame	MGLGRCIWEGPLIPPWGWPGNTLVAVSIFLLLTGPTYLLFKLSPr|cspvpstllqstcrnmapssraprtlac	.
TALL079	IL9R	WASH6P	+/+	+/+	X:156006188	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	3	237	158	low	.	.	low_entropy(1),read_through(1)	CCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___...CTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___ACCTACAAGATGGGGTACTAACACCACCCCCAC	out-of-frame	WEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|gprelllcarpgpga*	.
TALL079	IL9R	WASH6P	+/+	+/+	X:155997787	X:156023012	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	246	158	low	.	.	.	CAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCAGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCaGAACTGCCCACCTTCCACACTGAGGTAGCCGAGCCTCTCAAGGCAG___A	out-of-frame	MPQTCDGTGQMHLGr|sqrttsmcqtwarclrlmfhptcltcpalpttsctlptwapalpplplapfqncppstlr*	.
TALL079	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	246	121	low	.	.	read_through(4)	TCTTTGCTGTGCACCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCAAGCACCGCCCCCTGGACGAGCGGGC...GCCAGTGCACCCCCACTCCCACCCTCAACCGCGGCCCCTGTAGGCCAAGGCGCCAGGCAGGACGACGGCAGCAGCAGCGCGTCTCCTTCAGGTGGGAGCAGCTCTTTGAGGCCACCTGATTTCTG	out-of-frame	MGLGRCIWE|gvlqcqvpcsrapagiwlhlhgrpgpwpaetpppqdpeqapppgra	.
TALL079	IL9R	WASH6P	+/+	+/+	X:156004565	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	486	121	low	.	.	read_through(5)	TCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___CAACCAGGCTCCTGGCGGCACACATAAGTGCATCTTGCGGGGCAGTGAGTGCACCGTCGTGCTGCCACCTGAGGCAGTGCTCGTGCCATCTGACAATTTCACCATC...GCAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCA...GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCC	out-of-frame	NISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|vfssakypapehlqeygsiftgaqdpglqrrprhriqs	.
TALL079	IL9R	WASH6P	+/+	+/+	X:156004565	X:156021694	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	486	57	low	.	.	mismatches(1)	GCAGGTCAGCCTGGTGGACCCGGAGTACCTGCCCCGGAGACACG...GGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTAGAGCAGAGCCGGAGCCAGG	out-of-frame	GHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|veqsrsq	.
TALL079	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	0	4	1	62	12	low	.	.	mismatches(1)	AAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGACATGACCCGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTG	out-of-frame	KVFALGLRGYLSYPSNVFDGLLTVVLLEAGDGGPAVAVGHDPHAEHAHRVPLPAYHPQHE|vtqealtwspqnsinssrcs*	.
TALL079	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	1	4	0	44	209	low	.	.	duplicates(1),mismatches(1)	GACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACaAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGgAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAAGGACAAGATGGAGG	.	.	.
TALL079	ANKRD36	RP11-734K23.9	+/+	+/+	2:97233871	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	2	48	272	low	.	.	mismappers(1),mismatches(1)	TTTTGAATATTGCCACAAGAATAACAGGCGGTTGGAAATCTGGAACAG___AGTATCCTGAGAATCTGCCCACCTTGAAG___GCTACAATTGAAAATAAAAATTCTGTTCTGAATACAGCCACCAAAATG...AAGACTTAGAAATGGCATCAGtGGGAGAGCAAAAGAGGCTTGAtGAATATGAAAATAACCAGCCACAG___GTGAAAAACCAAATACATTCTAGGGATGACCTTGATGACATAATTCAGTCATCTCAAACAGTCTCAGAGGACGGTGACTCGCTTTGCTGTAATTGTAAGAATGTCATATTACTCATTGATCAACATGAAATGAAGTGTAAAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAGGCAG___TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCA	out-of-frame	DLEMASvGEQKRLdEYENNQPQVKNQIHSRDDLDDIIQSSQTVSEDGDSLCCNCKNVILLIDQHEMKCK|gdgis*	.
TALL079	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23232293	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	2	39	18	low	.	.	mismatches(1)	CTGAAGCAAAATGCACCTGAGGCTTACAGTGGG___GTTCTGACAACAAAGGAGATTGTGACATATTGCTGGGCCTAACACTAAG___...CCAAGATGAT___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTGTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGAACGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGG___GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGCAAAGAGCCCTGGAATATGGAGAGACATGAGATGGTGGCCAAACCCCCAG___GTATGTGTTGTTATTTTGCgCAAGACCTTCGGCCAG	.	.	.
TALL079	ARHGEF18	C19orf45	+/+	+/+	19:7470315	19:7500806	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	2	97	15	low	.	.	.	TGCTGCTCAACAAGCTCATGGGGAAAGATGAGAGCACCTCACGGAACCGCCGCTCGCTGAGCCCTATCCTGCCCGGCAGACACAGTCCTGCGCCCCCACCAG___ACCCTGGCTTCCCCGCCCCGAGCCCACCGCCAGCTGACAGCCCCTCCGAGGGCTTCTCTCTCAAGGCCGGGGGCACAGCCCTCCTGCCCGGGCCCCCAGCTCCCTCGCCACTGCCGGCCACACCACTCAGCGCCAAGGAGGACGCCAGCAAAGAAGACGTCATCTTCTTCTAAAAGGGCCGTGACTCAAG|GTGGCTGGTGTCCCGCGATGGCCACAGGCGCCCTCCTGCCGTGCTCGCGCCCGTGCCCGATGTCCCGGCTGGACTTCCTCAAGGCCTCGCACTTCTCGCTGGGGCCTGACCTGCGGCTGCACGAGGGCACCgTGCGCACCACGTCGCACCGGGACTTTGCCTACCCGGCTGCCACCCGtGAGCCGCCGAGCCTGCAGCCGCCGCCCGCGCTGCTTTTCCCAATGGACCCGCGCTGGGACCGGGAAGAGCGCGTGTCGGAG	out-of-frame	LLNKLMGKDESTSRNRRSLSPILPGRHSPAPPPDPGFPAPSPPPADSPSEGFSLKAGGTALLPGPPAPSPLPATPLSAKEDASKEDVIFF*kgrdsr|wlvsrdghrrppavlapvpdvpaglpqglallaga*	.
TALL079	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	4	0	0	176	34	low	.	.	duplicates(1)	GGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGG	.	.	.
TALL079	ABI3	PHOSPHO1(5374),FLJ40194(12099)	+/+	./+	17:49220326	17:49236140	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	2	305	145	low	.	.	homopolymer(1),mismappers(1)	CCGGATTCCCGAGCCAGTGCACCTGCCGGTGGTGCCCGACGGCAGACTCTCCGCCGCCTCCTCTGCGTcTTCCCTGGCCTCGGCCGG___CAGCGCCGAAGGTGTCGGTGGGGCCCCCACGCCCAAGGG...CTTGGACCCACCTCCTCCACCAGCAGCCGTCGAGGTGTTCCAGCGGCCTCCCACGCTGGAGGAGTTGTCCCCACCCCCACCGG|ATGAGAAACAGGAGGAACAGGATGTATGTAACTTGCCCAAGGTCACAGAGCCAAGAGGTGGCTGAAGCCAGACTTGAACCCAGGCATTCAGCTAAGAAACTGCATT...AGCAAAACATCACAAGACCTGCTCTAGAGAAAGTGTTCCTGCCTCCTGCTAGGCAAGGTGATGCCCTAGGGGAAAGGAAGGAGGAGAAAG___ATGGGGTTTCGCCATGTTGCCCAGGATGATCTTGAAC	out-of-frame	LDPPPPPAAVEVFQRPPTLEELSPPPP|dekqeeqdvcnlpkvteprgg*	.
TALL079	CD44	RP1-68D18.3	+/+	+/+	11:35221732	11:35285337	splice-site	splice-site	deletion/read-through	downstream	upstream	4	0	0	1195	5	low	.	.	low_entropy(7)	ATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAATACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGCGGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACTGTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCTGCTACCA___GAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCATACCACTCATGGATCTGAATCAGATG___GACACTCACATGGGAGTCAAGAAGGTGGAGCAAACACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAG___AATGGCTGATCATCTTGGCATCCCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAG|GACTGCTGGgCATGTTCAAAGCAATGTATGGAAAGAGTCCGCCATCTCAGAGGAACCAAAGAGTG	out-of-frame	IVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRr|taghvqsnvwkesaiseepks	.
TALL079	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	1	15	10	low	.	.	low_entropy(2),mismatches(1)	GCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAG	out-of-frame	TGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL079	MEA1	PEX6	-/-	-/-	6:43012926	6:42978206	splice-site	intron	deletion/read-through	upstream	downstream	2	1	0	206	30	low	.	.	.	TGGGGATTGGAGCAGTGAGGAGCCTGAGGAAGAGCAGGAGGAAACGGGGTCGGGCCCAGCTGGCTACTCCTACCAGCCCCTGAACCAAGATCCTGAACAAGAGGAGGTGGAACTGGCACCAGTGG...CTGACATCCAGGATCGAATCCAG___GCCCTGGGGCTTCATTTGCCAGACCCACCATTAGAGAGTGAAGATGAAGATGAGGAGGGAGCTACAGCGTTGAACAACCACAGCTCTATTCCCATGGACCCAG|GTAAATTGGAAGATTTAGGACTCGTGCCCCATATCATCCCGGACTTTGAACATAATGTTTCTAGCCGGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCG	out-of-frame	DIQDRIQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDP|gkledlglvphiipdfehnvssrar*	.
TALL079	MEA1	PEX6	-/-	-/-	6:43012926	6:42969987	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	206	61	low	.	.	.	GGGGTCGGGCCCAGCTGGCTACTCCTACCAGCCCCTGAACCAAGATCCTGAACAAGAGGAGGTGGAACTGGCACCAGTGGGGGATGGAGATGTAGTTGCTGACATCCAGGATCGAATCCAG___GCCC...ATTAGAGAGTGAAGATGAAGATGAGGAGGGAGCTACAGCGTTGAACAACCACAGCTCTATTCCCATGGACCCAG|GTGGCGGGAAAT?TTTTTTAAAGTGAAGAAAACAGTTGGGGAAGCTCCAGATGGACCAGCCAGTGCCTACTTGGCCGACACCACCCATACCTCCTTGTACATG___GTGGGTTCTAC	out-of-frame	LESEDEDEEGATALNNHSSIPMDP|gggk?flk*	.
TALL079	MEA1	PEX6	-/-	-/-	6:43012926	6:42969801	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	0	206	43	low	.	.	.	AGATGAGGAGGGAGCTACAGCGTTGAACAACCACAGCTCTATTCCCATGGACCCAG|GTGGGTTCTACCCTGAGCCCTGTTCCATGGCTCCCTTCAGAGGAATCCACTCTCTGGAGCAGTTTGTC...CCAGCAGGGGCATCTGTTTCTGAGACTGCCCTTCCCCTTGGGGAaCTCACTGGCCATCCTGCACTTTACTGCCCTGGCCCTGAAGGACACAACTCCTCATACCAGTGGCCCAGGTGTGGACG	out-of-frame	DEEGATALNNHSSIPMDP|ggfypepcsmapfrgihsleqf	.
TALL079	RRP8	TIMM10B	-/-	+/-	11:6603404	11:6483148	splice-site	3'UTR	deletion/read-through/5'-5'	upstream	downstream	2	1	0	143	262	low	.	.	.	CGGCGACCCTGCCCTCCCGACCCTCATGTTCGAAGAGCCTGAGTGGGCCGAGGCGGCCCCAGTAGCCGCGGGCCTTGGGCCCGTAATCTCACGACCTCCGCCTGCGGCCTCCTCGCAAAACAAG|TTTCTCTTCCTCGGATTTGGCTGCATTGCAGAATATGGTCCCCAGCTCTCTCCCTTCCTGATTGCCCGTGAAGACAACCACACAGACCTTTGTTCAAAGGTTTTACTGCTCATCCTGAGAAGACTGTACATACTAAGAAAGTAACAACCTGGGGAAATGGCTGAAG	out-of-frame	MFEEPEWAEAAPVAAGLGPVISRPPPAASSQNK|flflgfgciaeygpqlspfliarednhtdlcskvlllilrrlyilrk*	.
TALL079	MAP3K12	MAP3K12	-/-	-/-	12:53485804	12:53488407	exon	intron	duplication	upstream	downstream	3	0	0	15	16	low	.	.	mismatches(1)	TGACCCACTCAAtTCAGTGTGGCCTTCTCCCGGCTTCCAAACtATGCCCTAGGTCCATGTGGCCATCTCAGAAACCTCTTCCAAGTGACAGTCCCATCTCAGAAGGGCTGTAGTGAGCCCCTCACCTTTGAGTGTCCCAAATGATTTTAAACTGAAAGGCAGGCCGGATGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGG|TTACAGGTGTGAGCCACTGCACCCGGCCTAATGGTTGCTTTTTAAATAGCACCCAGCTATGAACTGGGA	.	.	.
TALL079	MLLT11	GABPB2	+/+	+/+	1:151060553	1:151088190	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	0	200	5	low	.	.	.	AGGAGTGAGAAGACAAAGCCGTCAAAGCCCCAACAGCTTTGTATTTCTCCAGCCCGGCGCAGACCCCGGAGCTCCCGAGGCACTCCCTCCATCTTTGGAACACGCCAGTAATTGATTGATAACAG|ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAACGTTGATGGCAAATGGCGCCCCATTCACCACAGACTGG___CTTGGAACATCACCCCTCCACCTTGCAGCTCAATATGGTCATTATTCCACAGCAGAAGTACTCCTTCGAGCAGGTGTTAGCAGGGATGCCCGGACTAAAGTAGACAGGACCCCCTTG	.	.	.
TALL079	MLLT11	GABPB2	+/+	+/+	1:151060553	1:151090406	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	200	8	low	.	.	.	GTCAAAGCCCCAACAGCTTTGTATTTCTCCAGCCCGGCGCAGACCCCGGAGCTCCCGAGGCACTCCCTCCATCTTTGGAACACGCCAGTAATTGATTGATAACAG|CTTGGAACATCACCCCTCC...AGCTGATGTCCATGCTTTCAGCAAATTTGATAAATCAGCCTTTGACATAGCTCTGGAGAAAAACAATGCTGAGATTTTGGTCATCCTCCAG___GAAGCAATGCAGAATCAGGTGAATGTTAATCCAG	.	.	.
TALL079	SBNO1	CDK2AP1	-/-	-/-	12:123364701	12:123267282	splice-site	splice-site	deletion/read-through	upstream	downstream	0	2	1	65	334	low	.	.	mismatches(1)	CGGGGAGGTAGGCAGAGCAGGACGCCGCTGCTGCCGCCGCCACCGCCGCCTCCGCTCCAGTCGCCTCTGGTCCTTCAAACTCACACCTCCCGGGAGGAGCTGTcCTGGCGCCGGGTCCCGCGGGGAAA|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGACTACGGGCCACCGTCCCTAGGCTACACCCAG___GGAACTGGGAACAGCCAGGTGCCCCAAAGCAAATACGCGGAGCTGCTGGCCATCATTGAAGAGCTGGGGAAG...GCTTGGCAGAAACGGAACGGAATGCCAGATCCTAGCTGCCTTGTTGGTTTTGAAGGATTTCCATCTTTTTACAAGATGAGAAGTTACAGTTCATCTCCCCTGTTCAGATGAAACCCTTGTTTTCA	.	.	.
TALL079	CLEC12A	CLEC12B	+/+	+/+	12:9982074	12:10010771	CDS	CDS	deletion/read-through	downstream	upstream	0	0	3	23	2	low	.	.	.	GTTGGGGTGTGAAGTGACTGAAACTTTGTACACTTATCTCAAGATATCATAGGCAAG___GAATTTATAAAATCCCAGAGTAGATCATATGACTATTGGCTGGGATTATCTCCTG...|...AGTGACCTACGCGACACTCACATTTCAGGATTCTGCTGGAGCAAGGAATAACCGAGATGGAAATAACCTAAGAAAAAGAG___GGCATCCAGCTCCATCTCCCATTTGGCGTCATGCTGCTCTGGGTCTGGTAACTCTTTGCCTGATGTTGCTGATTGGGCTGGTGACgTTG	.	.	.
TALL079	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	2	0	10	5	low	.	.	.	TTATGGATCTTGGGTGTTCCTCCATGCAACTTGATACTCCTGAAAGAGGTTTTTCCCTTCGGAAAGATGGCCCTTTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCT...GGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAGGCAAGAAAATTC...___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTG	out-of-frame	GEACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL079	ABLIM1	AFAP1L2	-/-	-/-	10:114437844	10:114340731	splice-site	splice-site	deletion/read-through	upstream	downstream	2	1	0	192	5	low	.	.	.	C___CAGACACTCCCAGATGGCCACATGCCTGCAATGAGAATGGACCGAGGAGTGTCTATGCCCAACATGTTGGAACCAAAG___ATATTTCCATATGAAATGCTCATGGTGACCAACAGAGGGCGAAACAAAATCCTCAGAGAGGTGGACAGAACCAGGCTGGAG|CCCTGGAACAGCTGCTGACAGAGTTGGATGACTTCCT...GCCTGGCGGAGCTCCTCCGGCTTTACACCAAAAGCAGCA___GCTCTGATGAGGAGTACATTTATATGAACAAAGTGACCATCAACAAGCAACAGAATGCAGAGTCTCAAGGCAAAG___CGCCTGAGGA	out-of-frame	QTLPDGHMPAMRMDRGVSMPNMLEPKIFPYEMLMVTNRGRNKILREVDRTRLE|pwnsc*	.
TALL079	RP11-1391J7.1	POLR2L	-/-	-/-	11:859669	11:840480	exon	splice-site	deletion/read-through	upstream	downstream	0	3	0	8	638	low	.	.	duplicates(1)	CGGAGACGCACCAGGGGACGGATGCATGAACCTGAGACGT|GGAcGCGCTGGATGCCCTGGGCCTGAAGCGCTACTGCTGCCGCCGGATGCTGCTGGCCCACGTGGACCTGATCGAGAAGCTGCTCAATTATGCACCCCTGGAGAAGTGACCACGCTGGAACCCACCCACCCGCTGTGCTGACCATGGGCCCTGAGCGTCCTaCCCCGAATTCACGAGGCTGAGGCATCCGGGA	.	.	.
TALL079	RNASET2	RPS6KA2	-/-	-/-	6:166938947	6:166759773	CDS	intron	deletion/read-through	upstream	downstream	0	0	3	531	2	low	.	.	.	CAGAAATGAGGGCATACTGGCCTGACGTAATTCACTCGTTTCCCAATCGCAGCCGCTTCTG___GAAGCATGAGTGGGAAAAGCATGGGACCTGCGCCGCCCAGGTGGATGCGCTCAACTCCCAGA...|...AGACGGTATGAGAAGACGCCAGCAGTGTGTTTCCAGGAAGCAGGAGTGCCTATTTCTGTGAAAGGCTGCACATATATTTTAAGATCCAGCATTTTCAAAGAGGTGAAATGTGGATGTGGATTCA	.	.	.
TALL079	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511955	7:23426347	exon	intron	deletion	downstream	upstream	0	0	3	78	0	low	.	.	mismatches(2)	.	.	.	.
TALL079	RILPL2	SBNO1	-/-	-/-	12:123423044	12:123350441	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	1516	81	low	.	.	mismatches(1)	GAAAAAGATGCTGTGGTTACTAGTGCCAAAAATGCTGGCAGGAACAAGGAGGAGAAGACAATCATAAAAAAGCT|ATGGTGGAGCCAGGGCAAGATTTACTGCTTGCTGCTTTGAGTGAGAGTGGAATTAGTCCGAATGACCTCTTTGATATTGATGGTGGAGATGCAGGGCTTGCAACTCCAATGCCTACCCCGTCAGTTCAGCAG___TCAGTGCCACTTAGTGCATTAGAACTAGGTTTGGAGACCGAAGCAGCAGTTCCTGTTAAACAAGAACCAGAGACTGTACCTACTCCAG	out-of-frame	EKDAVVTSAKNAGRNKEEKTIIKKl|wwsqgkiyclll*	.
TALL079	PPP6R2	SELO	+/+	+/+	22:50432329	22:50206317	splice-site	splice-site	duplication	downstream	upstream	2	1	0	120	468	low	.	.	.	GCTCAACCCGCCCAAG___AAGAAAGCGATCCTGACCACCATTGGTGTGCTGGAGGAGCCCCTGGGGAATGCCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCACACAAACACACCCAGC...GGGAACCGGAGCCTGGAGACTCCCCAGCCGGCCGCCAGCCTCCCTGACAACACAATGGTGACCCAC___CTGTTCCAGAAGTGCTGCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|ACAGGCCGACGGTCGCAAGGTCCTACGGTCAAGCATCCGGGAGTTTCTATGCAGCGAAGCCATGTTCCACCTGGGAGTCCCCACCACACGGGCCGGCGCCTGCGTCACGTCCGAGTCCACGGTGGTGCGCGACGTGTTCTATGATGGTAATCCCAAATATGAACAATGaACGGTTGTGTTGCGTGTAGCTTCCACTTTCATAAGaTAATGCCGG	in-frame	GNRSLETPQPAASLPDNTMVTHLFQKCCLVQRILEAWEANDHTq|QADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQ*	.
TALL079	TRIM59	TRIM59	-/-	-/-	3:160438232	3:160439186	splice-site	splice-site	duplication/non-canonical_splicing	upstream	downstream	2	0	0	27	9	low	.	.	duplicates(1)	CAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAGTAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATGAAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTG|GAAATGCACAATTTTGAGGAAGAGTTAACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTAC	out-of-frame	QRPLPEVQPVEIYPRVSKILKEEWSRTEIGQIKNVLIPKMKISPKRMSCSWP|gnaqf*	.
TALL079	TPCN2	RP11-554A11.9	+/+	+/+	11:69081499	11:69135435	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	1	0	62	12	low	.	.	mismappers(1)	CTCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCT...CCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTT___GACTTGCTGTGCTC...CCGACCAAGAGTTTGAGGTGTCCAGGGGGTGACGTGAAGATGACCTATTGCAGAGGGTCCCTTCTCATTCACGCTCTGAAGTCTGCACAGGGGCAGGGGCTACCGTGCTCCATTTCAGTTTGGC	out-of-frame	PSMK|*	.
TALL079	SHQ1	RNA5SP136(36034),SHQ1(21432)	-/-	./-	3:72782432	3:72727845	intron	intergenic	deletion/read-through	upstream	downstream	0	0	2	21	3	low	.	.	mismappers(1)	AGCGTACATACTGAATGATCTCTACATCTCAGACTACTGTGTGTGGATTCAGAAAGTCAA___AAGCTGGGAAAATAATAAACAGAGCTGTGGAACATATCTTTGGGCATGGAGTGTTGGAAAAGGAC...|...AGGTGTGAGCGGAGGTGATCTGGTCAGAATGGCAACAGCACCCATCCCACTACCCACAAGGTGAGCCTGACACCGTTACCAAGACTTCTGTCCTTCTGGATTCAACAGGCTCAAGAGATTGTCTGTG	.	.	.
TALL079	GOLGA2P5	UHRF1BP1L	-/-	-/-	12:100157528	12:100108548	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	12	41	low	.	.	.	CAAGCATCCCGGAGGATCTAGAGAGCCAGAAGGCCATG___GTGGCATTTTTCAACTCAGCTGTAGCTAGTGCCGAGGAGGAGCAGGCACGGCTATGTGGGCAGCTGAAGGAGTGCACTGCCAGCGCC...GGCAGCAGCCCCAGCCCCAAGAACTGGGGGTGATCCCATGTGTGGGGAGACCCACCAGGCCCTGCAGGGGGCCATGGAGAAGCTGTGG|ATTTACCAAAAATTTATCTCCTGACAAGATAAATCTAAGTACCCTTAAAGGAGAAGGTGAACTGAAGAATTTGGAGTTGGATGAAGAAGTACTCCAGAATATGTTGGATTTGCCAACATGGCTTGCTATCAACAAAG[t]TTTTTTGTAATAAAGCGTCCATTAGG___ATCCCATGGACAAAACTGAAAACACATCCCATCTG	.	.	.
TALL079	PLCL2	SNX32	+/.	+/.	3:17090063	11:65834795	3'UTR	intron	translocation	upstream	downstream	2	0	0	86	2	low	.	.	.	.	.	.	.
TALL079	LRRC7	SRSF11	+/+	+/+	1:70041184	1:70224406	intron	intron	deletion/read-through	downstream	upstream	0	0	2	1	453	low	.	.	mismappers(2),mismatches(5)	TATTTGGTGTCCT...|...GCTGCTGCTTTATTCTCCTTAACACTACTTTTTTTCTATAGCACCTGTCACCAGTTGACAGGTTAAGTTTAACAACTTCTCTCCTGTAGAATATGAGGTGCTTTAAAATACATGTATGACTGAAC	.	.	.
TALL079	CCZ1	CCZ1	+/+	+/+	7:5918841	7:5912955	exon	intron	duplication	downstream	upstream	0	2	0	37	22	low	.	.	.	GATGGCTCTAGTTGACCAAAAAGCAGCTTCTTACAGTTGACTTCTCCCCATTGACTTTGAACAGATTGTTATTATACGAAAGTCTCCTTTTTTCCACCATTTCATAA|GTAACAACTGTTTTCCTTCCAGCGTTAATGATTGTGCTGAAGTGGATCTTTCTTGCATGTGTACACGAGTGCATGTGCAAACCTCTTAAATGTTTCTTGGAAAAGATATTGGAAG	.	.	.
TALL079	UBE2N	JADE1	-/-	+/+	12:93441855	4:128816367	splice-site	splice-site	translocation	upstream	upstream	0	2	0	407	9	low	.	.	.	CGGAGACGAGACCAGAGGCCGAACTCGGGTTCTGACAAGATGGCCGGGCTGCCCCGCAGGATCATCAAG|TTCATAGCCCTGATGAAGCAAGTTACTCTGCTCTCCTAATAAATGCAAGAAAATGACCTTGGAGGGCCTTTTTAATTACACATAGAAGTGACAATTT___GCTGCCTGCTGTTTCCCGGGGAGATCATGAAACGAGG	out-of-frame	MAGLPRRIIK|fialmkqvtlls*	.
TALL079	MAD1L1	MLLT1	-/-	-/-	7:2069194	19:6214038	splice-site	splice-site	translocation	upstream	downstream	0	2	0	32	82	low	.	.	.	CAGCTGTTGGAGGAGAGGAAGAAGCGCGAGACCCACGAGGCGCTGGCCCGGAGGCTCCAGAAACGGGTCCTGCTGCTCACCAAG|GTTGAGCTTCAGCGACAGCGAGAGTGACAACAGCGCCGACTCCTCCCTGCCCAGCCGTGAGCCCCCACCCCCCCAGAAGCCACCCCCGCCCAACAGCAAG___GTGTCAGGCCGGAGGAGCCCCGAGTCCTGCAGCAAGCCTGAGAAGATCCTCAAGAAGGGC	out-of-frame	QLLEERKKRETHEALARRLQKRVLLLTK|velqrqre*	.
TALL079	HCP5	PAPOLA	+/+	+/+	6:31463279	14:96542243	splice-site	splice-site	translocation	downstream	upstream	0	2	0	42	395	low	.	.	duplicates(1)	TCCCGAACCCTCCTCCTGCTGTTCTCGGGAGCCGTGGCCCTGATCCAGACCTGGGCAG|GCATTATATTGTACTTCTAGCAAGTGCACCAACAGAAAAACAACGCCTGGAATG___GGTGGGCTTGGTGGAATCAAAAATCCGAATCCTGGTTGGAAGCTTGGAGAAGAATGAATTTATTACACTGGCTCATGTGAATCCCCA	.	.	.
TALL079	GTDC1	ARHGAP15	-/-	+/+	2:144208603	2:143556408	splice-site	splice-site	inversion	upstream	upstream	0	2	0	125	319	low	.	.	.	AGAAATGGCATTGGAGAGCCCGGACATCTGCTTTATATTTCTCTCAGACCATTCCCATCAGTGAGCATTACAG|GTCTAGATGTTGATGGAATATATCGAGTTAGTGGCAATCTGGCAACAATACAGAAGTTAAGATTTATTGTC...GACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTCTTCCCTTACAGTTTCTTTGAGCAGTTTGTGGAAGCGATCA___AAAAGCAAGACAACAACACAAGAATTGAA	out-of-frame	KWHWRARTSALYFSQTIPISEHYr|src*	.
TALL079	TSC2	KDM4B	+/+	+/+	16:2050486	19:5143967	splice-site	splice-site	translocation	downstream	upstream	0	1	1	77	335	low	.	.	.	GGGCAGATTTGTGAAGTCGCAAAAACCAAGAAATTTGAAGAG|AAATGCGTGTACTGCCGGAAGCGGATGAAGAAGGTGTCAGGTGCCTGTATCCAGTGCTCCTACGAGCACTGCTCCACGTCCTTCCACGTGACCTGCGCCCcCGCCGCAGGCGTGCTCATGGAGCCGGACGACTGGCCCTATGTGGTCTCCATCACCTGCCTCAAGCACAAGTCGGGGGGTCACGCT___GTCCAACTCCTGAGGGCCGTGTCCCTAGGCCAGGTGGTCATCACCAAGAACCGC	in-frame	GQICEVAKTKKFEE|KCVYCRKRMKKVSGACIQCSYEHCSTSFHVTCApAAGVLMEPDDWPYVVSITCLKHKSGGHAVQLLRAVSLGQVVITKN	.
TALL079	NOL4L	TGFBR1	-/-	+/+	20:32474601	9:99128855	splice-site	splice-site	translocation	upstream	upstream	0	1	1	172	99	low	.	.	duplicates(1)	CAGGACGAGAGGATGCGGAGCCCGCAGAACCTCCACAGTCAAGAGGACG|CGTTACAGTGTTTCTGCCACCTCTGTACAAAAGACAATTTTACTTGTGTGACAGATGGGCTCTGCTTTGTCTCTG...CAGACAAAGTTATACACAACAGCATGTGTATAGCTGAAATTGACTTAATTCCTCGAGATAGGCCGTTTGTATGTGCACCCTCTTCAAAAACTGGGTCTGTGACTACAACATATTGCTGCAATCAG	in-frame	QDERMRSPQNLHSQED|aLQCFCHLCTKDNFTCVTDGLCFVS	.
TALL079	AFF4	STRIP1	-/-	+/+	5:132963259	1:110051683	splice-site	splice-site	translocation	upstream	upstream	0	2	0	136	346	low	.	.	.	CGGTGAAGGTGCAGGCCCGGCGCCGCCACTGCCGCAGCCAGGAGATGGTTCGGGCCTAGCGGAGCCGGGACTGGAG|ATGCTGGTGGTGTTCAAGTCAGCCCCCATCTTGAAGCGGGCCCTAAAGGTGAAACAAGCCATGATGCAGCTCTATGTGCTGAAGCTGCTCAAGGTACAGACCAAATACTTGGGGCGGCAGTGG	.	.	.
TALL079	VPS37B	CDK2AP1	-/-	-/-	12:122895952	12:123267282	splice-site	splice-site	duplication	upstream	downstream	0	1	1	384	334	low	.	.	.	CGACGGCCGAGACGTGGGGATGGCGGGCGCCGGGAGCGAAGCCCGGTTCGCCGGGCTGTCGCTGGTGCAGCTCAACGAGCTGCTGGAGGACGAGGGCCAGCTGACGGAGATGGTGCAGAAGATGGAGGAG|CTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACAGTACCGCCAGCTGCTCAGTGACTACGGGCCACCGTCCCTAGGCTACACCCAG___GGAACTGGGAACAGCCAGGTGCCCCAAAGCAAATACGCGGAGCTGCTGGCCATCATTGAAGAGCTGGGGAAGGAGATCAGACCCACG	out-of-frame	MAGAGSEARFAGLSLVQLNELLEDEGQLTEMVQKMEE|lgvstrlppawqrlhstascsvttghrp*	.
TALL079	MNT	CLUH	-/-	-/-	17:2394043	17:2704564	splice-site	splice-site	duplication	upstream	downstream	2	0	0	112	71	low	.	.	.	GG___GATCGGAACCAGAGAAGTCCACAACAAATTGGAGAAGAACAG___GAGGGCCCATCTGAAAGAGTGCTTTGAGACCCTGAAGCGGAACATCCCCAACGTGGATGACAAGAAGACGTCCAATCTGAGCGTGCTGCGGACGGCGCTGCGGTACATCCAG|AGCTGCCATCAGTCATGCTCTTAAACGGGGACTGCCCAGAGAGCCTGAAGAAG	out-of-frame	GIGTREVHNKLEKNRRAHLKECFETLKRNIPNVDDKKTSNLSVLRTALRYIQ|schqscs*	.
TALL079	UPF2	APBB1IP	-/-	+/+	10:11997672	10:26500819	splice-site	splice-site	inversion	upstream	upstream	2	0	0	136	81	low	.	.	.	CAAGAAGATGAGGAAGCCAGCACTGGATCTCATCTCAAGCTCATAGTAGATGCTTTCCTACAGCAGTTACCCAACTGTGTCAACCGAGATCTGATAGACAAG___GCAGCAATGGATTTTTGCATGAACATGAACACAAAAGCAAACAGGAAGAAGTTGGTACGGGCACTCTTCATAGTTCCTAGACAAAG|AGTCCTTAAATGCACTGGA	out-of-frame	QEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALFIVPRQr|vlkct	.
TALL079	MORF4L1	EFTUD1	+/+	-/-	15:78880579	15:82130561	splice-site	splice-site	inversion	downstream	downstream	2	0	0	2323	61	low	.	.	.	GG___GTGAGCGAGTGCTGTGCTTTCATGGGCCTCTTCTTTATGAAGCAAAG___TGTGTAAAGGTTGCCATAAAGGACAAACAAGTGAAATACTTCATACATTACAGTGGTTGGAATAAAAA|ATCATTCCCAGTGACCCCTTCTGGGTGCCAACTACTGAGGAGGAATACTTGCACTTTGGGGAGAAGGCTGACTCTGAGAACCAAGCCCGGAAGTACATGAACG	out-of-frame	GERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKk|sfpvtpsgcqllrrntctlgrrltlrtkpgst*	.
TALL079	PRPS2	RASSF2	+/+	-/-	X:12799390	20:4790611	splice-site	splice-site	translocation	downstream	downstream	0	2	0	89	278	low	.	.	.	TTGCGTCATCATCCAGAGTAACTGCCGTGATCCCGTGTTTCCCATACGCCCGACAAGATAAAAAGGACAAG|ACTCCAGGGGCCTGAAGCCCCTGCAGGAGGACACCCCACAGCTGATGCGCACACGCAGTGATGTTGGGGTGCGTCGCCGTGGCAATGTGAGGACGCCTAGTGACCAGCGGCGAATCAGACGCCACCGCTTCTCCATCAACGGCCATTTCTACAACCATAAG___ACATCCGTG	out-of-frame	ASSSRVTAVIPCFPYARQDKKDK|tpga*	.
TALL079	C7orf50	GAK	-/-	-/-	7:1009950	4:894009	splice-site	splice-site	translocation	upstream	downstream	1	0	1	57	353	low	.	.	.	TGGCGAAGGAGCCGGCTCCAAG___GGCGAAGCTGTGCTCAGGCCCGGGCTGGACGCAGAGCCAGAGCTGTCCCCAGAGGAGCAGAGGGTCCTGGAAAGGAAGCTGAAAAAGGAACGGAAGAAAGAGG...GGCCTTGTGGCCCAGCACCCGCCTGCCAGGCGCTCGGGGGCCGAACTGGCCCTGGACTACCTCTGCAG|GCCCTGGGCTGCATCTTGTACCTGCTGTGCTTCCGGCAGCACCCTTTTGAGGATGGAGCGAAACTTCGAATAGTCAATGGGAAGTACTCGATCCCCCCGCACGACACGCAGTAC	out-of-frame	GLVAQHPPARRSGAELALDYLCr|pwaasctccasgstllrmernfe*	.
TALL079	TOX	LYN	-/-	+/+	8:59118886	8:55941855	splice-site	splice-site	inversion	upstream	upstream	1	0	1	244	411	low	.	.	.	AGCTTGTTTTGCTGAACACTTTTTTTTAAAAAAGGAAAAAGAAAAGGAGTTGCTTGATGTGAGAGTGAAATGGACGTAAGATTTTATCCACCTCCAGCCCAGCCCGCCGCTGCGCCCGACGCTCCCTGTCTGGGACCTTCTCCCTGCCTGGACCCCTACTATTGCAACAAG|GAAATATGGGATGTATAAAATCAAAAGGGAAAGACAGCTTGAGTGACGATGGAGTAGATTTGAAGACTCAACCAGTACGTAATACTGAAAGAACTATTTATGTGAGAG	out-of-frame	MDVRFYPPPAQPAAAPDAPCLGPSPCLDPYYCNK|eiwdv*	.
TALL079	GAS6-AS1	IST1	+/+	+/+	13:113833579	16:71921343	splice-site	splice-site	translocation	downstream	upstream	2	0	0	71	1153	low	.	.	duplicates(1)	TGTAAGAAGTGCCTTTTGCCTCCCACCGTGATTCTGAGGCCTCCCCAACCATGTGCAATT___GCACAGGCCCAGGCTGAAGAGGAAAGACAAGAGCCGCCCTGCCCAGAAACGTCCACATGTGGGTACTGCATTCCTACCGGTGTGACAG|CTAATGCACAAGCTGAGTGTGGAAGCCCCACCCAAAATCCTGGTGGAGAGATACCTGATTGAAATTGCAA	.	.	.
TALL079	ACSF3	SLC7A5	+/+	-/-	16:89098763	16:87841155	splice-site	splice-site	inversion	downstream	downstream	0	2	0	42	608	low	.	.	.	CTCTTGTGAACTGCGAACTTCCCCTTACCTCCTCTCTCTGGCTCGGGAGCTGG|GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGAACATTGTGCTGG...GGCCTCTTTGCCTATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTGGCCATCATCATCTCCCTGCCCATCGTGACGCTGGTGTACGTGC	.	.	.
TALL079	WDR26	RB1CC1	-/-	-/-	1:224398097	8:52645867	splice-site	splice-site	translocation	upstream	downstream	2	0	0	548	673	low	.	.	.	TGGCCGATTAGCTTTGTTAAATGTAGCAACTCAG___GGAGTTCATTTATGGGACTTGCAAGACAGAGTTTTAGTAAGAAAGTATCAAGGTGTTACACAAGGGTTTTATACAATTCATTCATGTTTTGGAGGCCATAATGAAGACTTCATCGCTAGTGGCAGTGAAG|TCCTGCCATTGACTCTACCAGAG	out-of-frame	GRLALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSE|vlpltlp	.
TALL079	CBFA2T3	SLC7A5	-/-	-/-	16:88976657	16:87851849	splice-site	splice-site	deletion	upstream	downstream	0	1	1	189	416	low	.	.	.	GCCTCGGGATCCACCTGTGGCTCCATGTCCCAGACGCACCCTGTGCTGGAGAGCGGCCTCCTGGCATCTGCCGGCTGCTCCGCACCCCGGGGTCCCAGGAAGGGCGGCCCAG|TGCTGCTCACGGCCGTGAACTGCTACAGCGTGAAGGCCGCCACCCGGGTCCAGGATGCCTTTGCC...GCCTCTTTGCCTATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG___AAACCTGCCCCTGGCCATCATCATCTCCCTGCCCATCGTGACGCTGGTGTACGTGC	in-frame	ASGSTCGSMSQTHPVLESGLLASAGCSAPRGPRKGGP|vLLTAVNCYSVKAATRVQDAF	.
TALL079	WDR5	BRD3	+/+	-/-	9:134156593	9:134053590	splice-site	splice-site	inversion	downstream	downstream	1	0	1	375	58	low	.	.	.	TCTGGGACTACAGCAAGGaGAAG___TGCCTGAAGACGTACACTGGCCACAAGAATGAGAAATACTGCATATTTGCCAATTTCTCTGTTACTGGTGGaAAG___TGGATTGTGTCTGGCTCAGAGGATAACCTTGTTTACATCTGGAACCTTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACAG|CTGTCGCCTGGTTGGGCCCGGAAATGGGACGTCGCGCTTTCTCAGGGAGCtTAGAAGCAGC...CAAGCCGCTGCTGTGACAGAAAGTGAGTGAGCTGCCGGAGGATGTCCACCGCCACGACAGTCGCCCCCGCGGGGATCCCGGCGACCCCGGGCCCTGTGAACCCACCCCCCCCGGAGGTCTCCAAC	out-of-frame	WDYSKeKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT|avawlgpemgrrafsgslea	.
TALL079	SUPT5H	ACTN4	+/+	+/+	19:39474718	19:38711276	splice-site	splice-site	duplication	downstream	upstream	1	0	1	535	522	low	.	.	.	CTGGTGGCTACAACCCACACAtGCCAGGCTCAGGCATCGAGCAGAACTCCAGCGACTGGGTAACCACTGACATTCAGGTGAAGGTGCGGGACACCTACCTGGATACACAGGTGGTGGGACAGACAGGTGTCATCCGCAGTGTCACG|ATATTGTGGGCACTCTGAGGCCAGATGAGAAGGCCATCATGAC	out-of-frame	GGYNPHmPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT|ilwal*	.
TALL079	BANP	SLC7A5	+/+	-/-	16:88065332	16:87841155	splice-site	splice-site	inversion	downstream	downstream	1	0	1	15	608	low	.	.	.	CACGGGAAGAAGCAGCTGGACCCGCTCACCATCTACGGCATCCGGT___GGCAACCTCCAGATCCATCACGTGGGGCAGGACGGTCAG___CTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCCCCATCCGTCTTCAAAGCCAGCAGTGGCCAG|GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGAACATTGTGCTGGCATTATACAGCGGCCTCTTTGCCTATGGAGGATG___GAATTACTTGAATTTCGTCACAGAGGAAATGAT	in-frame	HGKKQLDPLTIYGIRWQPPDPSRGAGRSASRGHPHPLPPGPIRLQSQQWP|gDVSNLDPNFSFEGTKLDVGNIVLALYSGLFAYGGWNYLNFVTEEM	.
TALL079	UVSSA	CTBP1	+/+	-/-	4:1355245	4:1228343	splice-site	splice-site	inversion	downstream	downstream	2	0	0	58	356	low	.	.	.	CCTTGCTCTCATCCACGCCGCCCGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAG___GCTGAATTGGAGCTCGTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCGCAGG|GTCCTGAACGAGGCTGTGGGGGCCCTGA	in-frame	LALIHAARDTLKLIRNKFLPAVCSWIQAELELVLRKYKELDIEPEGGERRR|VLNEAVGAL	.
TALL079	UVSSA	CTBP1	+/+	-/-	4:1355245	4:1238337	splice-site	splice-site	inversion	downstream	downstream	1	0	0	58	251	low	.	.	.	GGACAACCTTGCTCTCATCCACGCCGCCCGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAG___CGCTTCACCCGCGTCGGGACCCACGGTGGATGTTTA...GTACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCaCAGG|GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCATTGCTGGATGGCCG	out-of-frame	VLRKYKELDIEPEGGERhR|asdlrs*	.
TALL079	FAM207A	SUMO3	+/+	-/-	21:44943837	21:44814104	splice-site	splice-site	inversion	downstream	downstream	1	1	0	49	832	low	.	.	.	GCGCCCGAGTGCACCAGGCTGCCGTGAGGCCGAAAGGGGAGGCCGCCCCCGGCCCCGCGCCCCCTGCCCCGGAGGCGACCCCTCCGCCGGCCTCGGCCGCGGGGAAG___GACTGGGCGTTCATCAAC...GGACGTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTCGAGTGCACGGAGCGTCCCTTCCATCAGGAGAG|GAGGGTGTGAAGACAGAGAATGACCACATCAACCTGAAGGTGGCCGGGCAGGACGGCTCCGTGGTGCAGTTCAAGATCAAGAGGCACACGCCGCTGAGCAAGCTGATGAAGGCCTACaGCGAGAGGCAG___GGCTTGTCAATGAGGCAGATCAGATTCAGGTTCGACGGGC	out-of-frame	DVRSVTSVRRGEAGSSARSVPSIRR|ggcedre*	.
TALL079	PPP6R2	SBF1	+/+	-/-	22:50432329	22:50468461	splice-site	splice-site	inversion	downstream	downstream	0	1	1	120	98	low	.	.	.	AGAAGTGCTGCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|GGAGTGGGGAAGGCCAGGGCCAGATTCTGCAGCGCTTCCCAGAGAAGGACTGGGAGGACAACCCATTCCCCCAGGGCATCGAGCTG___TTTTGCCAGCCCAGCGGGTGGCAGCTGTGTCCCGAGAGGAATCCACCGAC	out-of-frame	KCCLVQRILEAWEANDHTq|ewgrpgpdsaalpreglggqpippghravlpaqrvaavsreest	.
TALL079	TSC2	ZNF598	+/+	-/-	16:2050486	16:2003728	splice-site	splice-site	inversion	downstream	downstream	1	0	1	77	660	low	.	.	.	CGAGGCCAAATCCCAGGTCTGCAGAGGGTAAACAGACGGAGTTTATCATCACCGCGGAAATACTGAGA___GAACTGAGCATGGAATGTGGCCTCAACAATCGCATCCGGATGATAGGGCAGATTTGTGAAGTCGCAAAAACCAAGAAATTTGAAGAG|GTGGTCTTTGGGAAGAAGCTTCCTGCCTTTGCCACCATCCCCATCCACCAGCTGCAGCATGAGAAGAAATATGATATCTACTTTGCAGATGGAAAGGTGTACGCATTGTACAG___GCAGCTGCTGCAGCACGAGTGCCCGCGGTGCCCCGA	in-frame	RPNPRSAEGKQTEFIITAEILRELSMECGLNNRIRMIGQICEVAKTKKFEE|VVFGKKLPAFATIPIHQLQHEKKYDIYFADGKVYALYRQLLQHECPRCP	.
TALL079	DAZAP1	SBNO2	+/+	-/-	19:1407802	19:1154402	splice-site	splice-site	inversion	downstream	downstream	0	1	0	279	80	low	.	.	.	GCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|ATCATGATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCGGGTCCTGGAGTCCCGCCGCCTGCTGCCCGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTG	out-of-frame	MNNSGADEIg|s*	.
TALL079	METRNL	TBCD	+/+	+/+	17:83085323	17:82903405	splice-site	splice-site	duplication	downstream	upstream	0	1	0	588	196	low	.	.	.	CGGAGGACCACAGGCTTCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTG|GGTCATCCGAGAGTTGGCTGCGAGGGCGCTGCACAACCTGGCCCAGCAGGCACCCGAGTTCAGCGCCACGCAAG___TCTTCCCGAGGCTGCTGTCCATGACACTGAGTCCAGATCTTCACATGAGGCATGGGTCGATTCTCGCCTGCGCAGAAGTTGCTTACGCCTTGTACAAACTTG	out-of-frame	RRTTGFQYELVRRHRASDLHELS|gsseswlrgrcttwpsrhpssaprkssrgccp*	.
TALL079	METRNL	TBCD	+/+	+/+	17:83085323	17:82905936	splice-site	splice-site	duplication	downstream	upstream	0	1	0	588	198	low	.	.	.	GGCTTCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTG|TCTTCCCGAGGCTGCTGTCCATGACACTGAGcCCAGATCTTCACATGAGGCATGGGTCGATTCTCGCCTGCGCAGAAGTTGCTTACGCCTTGTACAAACTTGCAGCCCAAGAGAACAG___GGGTCTGGGAGGACAGCTCATGAGACAAGCAG___GATGCAGCAG	in-frame	GFQYELVRRHRASDLHELS|vFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRGLggqlmrqagcs	.
TALL079	METRNL	TBCD	+/+	+/+	17:83085323	17:82924939	splice-site	splice-site	duplication	downstream	upstream	0	1	0	588	392	low	.	.	.	GCCGCAGCAGGATATCGGCCGGAGGACCACAGGCTTCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTG|AGGAGCTGATCACGCAGTACCTGGCTGAGCTTCGGAACCCCGAGGAGATGACTCGCTGTGGCTTCTCGTTGGCCTTGGGCGCCCTTCCAGGCTTCCTTCTGAAAGGCCGGCTCCAGCAG___GTTCTCACAGGTTTAAGAGCAGTTAC	in-frame	PQQDIGRRTTGFQYELVRRHRASDLHELS|eELITQYLAELRNPEEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAV	.
TALL079	METRNL	TBCD	+/+	+/+	17:83085323	17:82941399	splice-site	splice-site	duplication	downstream	upstream	0	1	0	588	420	low	.	.	.	TCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTG|GGACGCGGAGCTTGCAGTGGTGAGAGAGCAGCGCAACCGTCTGTGTGACCTTCTGGGCGTACCCAGGCCCCAGCTGGTGCCCCAG___CCTGGTGCCTGCTGAAGCCAGTCCTGGAGCCCATACCTCACCCCTGCCTGGTGAGGATGTCTTGTTCCTGAG	out-of-frame	QYELVRRHRASDLHELS|gtrslqw*	.
TALL079	ACSF3	CBFA2T3	+/+	-/-	16:89102759	16:88892485	splice-site	splice-site	inversion	downstream	downstream	1	0	0	164	443	low	.	.	.	CTTGGAATGAAACTCCTCGATCGTCAATGTCGAGTT___CACCAGGCCCAGCACCAGTGTGCGCACGCGCTCCCCAATCTCTGGGGAGATGTCGCTGCCAAACTGCTGCAGTGcGGTGAGGAAGCGC...GCTCCCGCTGCACCACGTCCAgGGTGTGGTCAACGCGCTGCTCTGTCCTCTCTGGGTGGGAGCCACCTGTGTGATGATGCCTtAGTTCAGCCCTCAGCAG|TGATGAACGGCAGCAGCCACTCAC	out-of-frame	LPLHHVqGVVNALLCPLWVGATCVMMP*FSPQQ|*	.
TALL079	ACSF3	CBFA2T3	+/+	-/-	16:89093992	16:88892485	splice-site	splice-site	inversion	downstream	downstream	1	0	0	31	443	low	.	.	.	GCCCGACTCACGACCCCGCGGGACCCGGCCGGAACCCGGCCCGACCCCGGCGCGCGCGCGGCGGAGGACGAGGAAGAGTTGTGGCGAGGCAGATCCTGCCCCGTGGCCGCGGCCGTCTC|TGATGAACGGCAGCAGCCAC	.	.	.
TALL079	ACSF3	CBFA2T3	+/+	-/-	16:89102759	16:88901656	splice-site	splice-site	inversion	downstream	downstream	0	1	0	164	203	low	.	.	.	TGCTCTGTCCTCTCTGGGTGGGAGCCACCTGTGTGATGATGCCTGAGTTCAGCCCTCAGCAG|CCCCAGTGGACAGGAAAGCTAAGGCCTCAGCGATGCCGGACTCCCCAGCGGAGGTGAAGACGCAGCCCCGGTCCACACCCCCCAGCATGCCGCCCCCACCGCCTGCCGCATCCCAGGGGGCCACACGCCCCCCCTCC	out-of-frame	LCPLWVGATCVMMPEFSPQQ|pqwtgklrpqrcrtpqrr*	.
TALL079	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89133136	splice-site	splice-site	inversion	upstream	upstream	1	0	0	71	187	low	.	.	.	CCTGAGTCGTGGAGGCGGGGACCAAGCTGGAAGGAGCAGCGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GTGAaCCCAGGGTTTGAAGAAAAGGAGGGGGAGCTGCTGGTGAGGGGACCCTCCGTGTTTCGAGAATACTGG	.	.	.
TALL079	CBFA2T3	ACSF3	-/-	+/+	16:88976657	16:89145267	splice-site	splice-site	inversion	upstream	upstream	1	0	0	189	200	low	.	.	.	GGCAGCCAGTTCAGCCTCGGGATCCACCTGTGGCTCCATGTCCCAGACGCACCCTGTGCTGGAGAGCGGCCTCCTGGCATCTGCCGGCTGCTCCGCACCCCGGGGTCCCAGGAAGGGCGGCCCAG|GGGACACCGTGGTGTTTAAGGATGGCCAGTACTGGATCCGAGGCCGGAC	in-frame	AASSASGSTCGSMSQTHPVLESGLLASAGCSAPRGPRKGGP|gDTVVFKDGQYWIRGR	.
TALL079	CBFA2T3	ACSF3	-/-	+/+	16:88941020	16:89102604	splice-site	splice-site	inversion	upstream	upstream	0	1	0	71	120	low	.	.	.	CGACTCCCGGACCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACC|GTGACCGGGCTGGTCCACAAGTGGGCATGGACCAAAGACGACGTGATCCTCC...GGGAGCCACCTGTGTGATGATGCCTGAGTTCAGCCCTCAGCAG___GTTCCGTGGGGACCCCACTGCCTGGAGTACAGGTGCGCATTGTCTCAGAAAACCCACAGAGGGAAGCCTG	.	.	.
TALL079	CBFA2T3	ACSF3	-/-	+/+	16:88976657	16:89120801	splice-site	splice-site	inversion	upstream	upstream	1	0	0	189	193	low	.	.	.	GCCGGCTTCAAGACTGAGGGACAGGGCAGCCAGTTCAGCCTCGGGATCCACCTGTGGCTCCATGTCCCAGACGCACCCTGTGCTGGAGAGCGGCCTCCTGGCATCTGCCGGCTGCTCCGCACCCCGGGGTCCCAGGAAGGGCGGCCCAG|GTTCCGTGGGGACCCCACTGCCTGGAGTACAGGTGCGCATTGTCTCAGAAAACCCACAGAGGGAAG	in-frame	PASRLRDRAASSASGSTCGSMSQTHPVLESGLLASAGCSAPRGPRKGGP|gSVGTPLPGVQVRIVSENPQRE	.
TALL080	SFPQ	ZFP36L1	-/-	-/-	1:35181135	14:68790492	splice-site	splice-site	translocation	upstream	downstream	8	17	128	1994	1064	high	.	.	duplicates(8),mismatches(2)	CACTAATATAAACAGCTAAAAAATGGGGAAATTGTAATGTTACGCCTGTGCAATTTTTAAGTGGCATATTATGGCAGATTAAAATTTAGATACTTGGCTTTTCTTGGGCAAGCCACTAAGTTGTGGCGGAATGTTTTCTGGTGTTCTTGGACTGCAATTATGCACTATTAAAGTAGTGGCCTGCTACATAACTGCATTTAGCCAGCATTTCTGCAGTGCGTAACTGTGAGGAACGTAGTACCGCAAATGGCAATGGACATTAGGACCCGGATGTAGTATTCCTGCTTGCTCCAAGATTCTCATTGCCGACTGCATACAG|GGTAACAAGATGCTCAACTATAGTGCTCCCAGTGCAGGGGGTTGCCTGCTGGACAGAAAGGCAGTGGGCACCCCTGCTGGTGGGGGCTTCCCTCGGAGGCACTCAGTCACCCTGCCCAGCTCCAAGTTCCACCAGAACCAGCTCCTCAGCAGCCTCAAGGGTGAGCCAGCCCCCGCTCTGAGCTCGCGAGACAGCCGCTTCCGAGACCGCTCCTTCTCGGAAGGGGGCGAGCGGCTGCTGCCCACCCAGAAGCAGCCCGGGGGCGGCCAGGTCAACTCCAGCCGCTACAAGACGGAGCTGTGCCGCCCCTTTGAGGAAAACGGTGCCTGTAAGTACGGGGACAAGTGCCAGTTCGCACACGGCATCCACGAGCTCCGCAGCCTGACCCGCCACCCCAAGTACAAGACGGAGCTGTGCCGCACCTTCCAC	.	.	.
TALL080	SFPQ	ZFP36L1	-/-	-/-	1:35187001	14:68790492	splice-site	splice-site	translocation	upstream	downstream	9	30	102	3567	1064	high	.	.	duplicates(7),mismatches(3)	ATGCAAAAGACAAATTGGAAAGTGAAATGGAAGATGCCTATCATGAACATCAGGCAAATCTTTTGCGCCAAG___ATCTGATGAGACGACAGGAAGAATTAAGACGCATGGAAGAACTTCACAATCAAGAAATGCAGAAACGTAAAGAAATGCAATTGAG___GCAAGAGGAGGAACGACGTAGAAGAGAGGAAGAGATGATGATTCGTCAACGTGAGATGGAAGAACAAATGAGGCGCCAAAGAGAGGAAAGTTACAGCCGAATGGGCTACATGGATCCA___CGGGAAAGAGACATGCGAATGGGTGGCGGAGGAGCAATGAACATGGGAG___ATCCCTATGGTTCAGGAGGCCAGAAATTTCCACCTCTAGGAGGTGGTGGTGGCATAGGTTATGAAGCTAATCCTGGCGTTCCACCAGCAACCATGAGTGGTTCCATGATGGGAAGTGACATG|GGTAACAAGATGCTCAACTATAGTGCTCCCAGTGCAGGGGGTTGCCTGCTGGACAGAAAGGCAGTGGGCACCCCTGCTGGTGGGGGCTTCCCTCGGAGGCACTCAGTCACCCTGCCCAGCTCCAAGTTCCACCAGAACCAGCTCCTCAGCAGCCTCAAGGGTGAGCCAGCCCCCGCTCTGAGCTCGCGAGACAGCCGCTTCCGAGACCGCTCCTTCTCGGAAGGGGGCGAGCGGCTGCTGCCCACCCAGAAGCAGCCCGGGGGCGGCCAGGTCAACTCCAGCCGCTACAAGACGGAGCTGTGCCGCCCCTTTGAGGAAAACGGTGCCTGTAAGTACGGGGACAAGTGCCAGTTCGCACACGGCATCCACGAGCTCCGCAGCCTGACCCGCCACCCCAAGTACAAGACGGAGCTGTGCCGCACCTTCCACACCATCGGCTTTTGCCCCTACGGGCCCCGCTGCCACTTCATCCACAACGCTGAAGAGCGCCGTGCCCTGGCCGGGGCCCGGGACCTCTCCGCTGACCGTCCC	in-frame	AKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRMGYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGSDM|GNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSSKFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDLSADR	.
TALL080	SFPQ	ZFP36L1	-/-	-/-	1:35187973	14:68790492	splice-site	splice-site	translocation	upstream	downstream	1	0	9	4533	1064	medium	.	.	.	GAAAAAAACATGAAAGATGCAAAAGACAAATTGGAAAGTGAAATGGAAGATGCCTATCATGAACATCAGGCAAATCTTTTGCGCCAAG___ATCTGATGAGACGACAGGAAGAATTAAGACGCATGGAAGAACTTCACAATCAAGAAATGCAGAAACGTAAAGAAATGCAATTGAG___GCAAGAGGAGGAACGACGTAGAAGAGAGGAAGAGATGATGATTCGTCAACGTGAGATGGAAGAACAAATGAGGCGCCAAAGAGAGGAAAGTTACAGCCGAATGGGCTACATGGATCCA|GGTAACAAGATGCTCAACTATAGTGCTCCCAGTGCAGGGGGTTGCCTGCTGGACAGAAAGGCAGTGGGCACCCCTGCTGGTGGGGGCTTCCCTCGGAGGCACTCAGTCACCCTGCCCAGCTCCAAGTTCCACCAGAACCAGCTCCTCAGCAGCCTCAAGGGTGAGCCAGCCCCCGCTCTGAGCTCGCGAGACAGCCGCTTCCGA	in-frame	EKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRMGYMDP|GNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSSKFHQNQLLSSLKGEPAPALSSRDSRF	.
TALL080	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85648552	intergenic	splice-site	deletion/read-through	downstream	upstream	36	27	19	142	136	high	.	.	duplicates(5),low_entropy(1),mismatches(13)	CCGGAGACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...GGAGGCT...___...TGTGGATCTGCCAGGGCCAAGGTGGCCGAAATTGCCTGGGCGCTGGTCGGAGAGAGAGCCTTTTGATCATCTTGCGGGGC?GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCG...___CCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCGAGGACTACCTGAGAAGCTTCCG	.	.	.
TALL080	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	7	20	6	219	112	high	.	.	duplicates(4),low_entropy(10),mismappers(1),mismatches(6)	CCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGAC	.	.	.
TALL080	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123577367	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	6	219	126	medium	.	.	duplicates(1)	CCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCCTGGAGGCCGGGCTGGCCCGGGACCTGCCCGCCGTCTTGGCCCCCGGCAAGGAGTTCCTGCAGCTGCCGTCCATCGAGATCACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAG	.	.	.
TALL080	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	12	12	8	111	384	high	.	.	duplicates(1),low_entropy(1),mismatches(1)	CGCAGCCGGGCGGAGGGCCCACGAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAGCTAATAATATAGAACAgAATGCTCAAGAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAG...GGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCAgGGAACTCTTTTCTCCCTCCACCcCCCCCCATGCCAGGGCCAAGACTGGGACCAGGAAAGGTAAACCTTCTATGAAAG	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQr|amiltfgmiqh*	.
TALL080	SERF1B	SMN2	+/+	+/+	5:70026515	5:70065965	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	4	111	299	low	.	.	.	CCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGG...GGTTTACACTGGATATGGAAATAGAGAGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAGCTAATAATATAGAACAgAATGCTCAAGAG___AATGAAAATGAAAGCCAAGTTTCA	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQs|ml*	.
TALL080	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	54	384	low	.	.	duplicates(2),read_through(25)	TTTtCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG___TTCTGGAGGCCAGAAATCTGAGAGCAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTGCATTTACC...GAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATCTGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCCATGCCAGGGCCAAGACTGGGACCAGGAAAG___ATAATTCCC	out-of-frame	MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL080	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	1	29	0	112	126	high	.	.	duplicates(3),low_entropy(5),mismatches(4)	AAAACTCCCGGGCTCCAGAGATCCTCCTTCCTCAACCTCCCAAAATGCTGGGATTACAG___CCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTATAAT___GTGTTAAGCCCCACCTACAAGCAGAGAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTG___ATTACTCATGTGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGA?CTGCTTCTACAGCAACATCTTCCGCTGGGAAACTC?G___CTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAACAGCTCGCCTCA...GTGTCCCAAGGAGCTCTGGCACTTTGTTCACCAGTGCTATGGGAACGAATTGGGCCTGACCAGTGATGACGAGGACTACGTGCCCCCTGACGACGACTTCAACACAATGGG___ATACTGTGAAG	.	.	.
TALL080	MICAL1	MICAL1	-/.	-/.	6:109451384	6:109452967	intron	intron	duplication	upstream	downstream	1	5	18	79	258	high	.	.	duplicates(1)	.	.	.	.
TALL080	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69079020	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	3	10	7	116	87	high	.	.	low_entropy(1)	TTTGACTACCTGGGGAACCTCATCGCCCTGGCAAACCTGGTGTCCATTTGC___GTGTTCCTGGTGCTGGATGCAGATGTGCTGCCTGCTGAGCGTGATGACTTCATCCTGGGG___ATTCTCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCATCAACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCCtGTCCACAGCACCCGGTACTCAGTAGGTGGTCCCATAAATGTTTGTGGCACAAGTGAATGAACTTGGAACCATCCATCTAGTGGAAATTGTAAATTATAACAAAACCCAATGGACCGTGAAAGCCAGGGTCAAGGCTGGGGCCTGCTGAGGCCCTGTCATCGAGGGAGTTTTTGTGCTGGTAAAGATGATGACTGCCCTGGTGCAGGGCCCGTGTAGCCCAACATGTCTAGTCCGTGGCGGGCTCTTACTGGGGATGAGGGGCCTC	out-of-frame	FDYLGNLIALANLVSICVFLVLDADVLPAERDDFILGILNCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLL|*	.
TALL080	AC114730.2	RTP5	+/+	+/+	2:241844478	2:241871714	splice-site	splice-site	deletion/read-through	downstream	upstream	4	12	3	323	303	high	.	.	duplicates(1),low_entropy(2),mismatches(1)	CCTGGGGCGCGTGGGTGGGGCGGGAGCGCAGCCGCAGCCCGGCGGCGACACAGGCCCGGGGCCAGCCGGGGACGGAAAAAGTGAGTGCGCGGCGGCGCGGGGCGGCCTGACGGGAAGGCGGGAGGCGAAGTGCTGACTGCGCCGCGGTCTCTCAGCCGCCAACACACCGCGGACGCCCGGGGACAGCGACCGCTTCCTCCCTCCCCGCCCGCCTTGTCTCTTTTT|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGTGCAGGCTGTGCCCCGCACCCGGGGACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCTGGTCTTGCACATCCTGCAGGACTGCTACGGGGATGGCCCCGGCCCAGCCCGGCACCCCAGGGAGGCCTATGAGGGCTGCTGTGAGGCCTGTGAGCTGGGGGTCTGCTTCCTCCAGAAGGCCCCAGACCCCGCCTGGAGCGCCAACGCCACAAAAGGCAACTTCCCCGCCACGGCCTGGGGTGGCACTGGC	.	.	.
TALL080	CTCF	PLA2G15	+/+	+/+	16:67562724	16:68254919	splice-site	splice-site	deletion	downstream	upstream	1	16	0	117	191	high	.	.	duplicates(2),low_entropy(5)	CGGCGGCGGTGGCCGGTGCGGACGCGCGGAGCTCGCCGGAGACGCCGGGTGGCCGGAGCCGTGGAGCGGCGGCGGAGCGGGCGCCGCGGGGGGTGTGGCGCGGAG|GCTGGTTTACAACAAAACATCCAGGGCCACCCAGTTTCCTGATGGTGTGGATGTACGTGTCCCTGGCTTTGGGAAGACCTTCTCACTGGAGTTCCTGGACCCCAGCAAAAGCAGCGTGG___GTTCCTATTTCCACACCATGGTGGAGAGCCTTGTGGGCTGGGGCTACACACGGGGTGAGGATGTCCGAGGGGCTCCCTATGACTGGCGCCGAGCCCCAA___CGGCAGCCGCAGGCCTGGAAGGACAAGTATATCCGGGCCTTCGTGTCACTGGGTGCGCCCTGGGGGGGCGTGGCCAAGACCCTGCGCGTCCTGGCTTCAG___GAGACAACAACCGGATCCCAGTCATCGGGCCCCTGAAGATCCGGG...AGAAGGTGTTCGTGCAGACACCCACAATCAACTACACACTGCGGGACTACCGCAAGTTCTTCCAGGACATCGGCTTTGAAGATGGCTGGCTCATGCGGCAGGACACAGAAGGGCTGGTGGAAGC...AGTCCCAGGTGGAAGAAGATGTCAGCTCGCCACCTCAAAGGTCCTCCGAAACTATGCAGCTGAAGAAGGAGATCTCCCTGCTGAATGGGGTCAGCCTGGTGGTGGGCAACATGATCGGCTCAGGG	.	.	.
TALL080	CTCF	SLC7A6	+/+	+/+	16:67562724	16:68266593	splice-site	splice-site	deletion	downstream	upstream	1	11	0	117	112	high	.	.	duplicates(2),low_entropy(1),mismappers(1),mismatches(1)	CCGGTGCGGACGCGCGGAGCTCGCCGGAGACGCCGGGTGGCCGGAGCCGTGGAGCGGCGGCGGAGCGGGCGCCGCGGGGGGTGTGGCGCGGAG|AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTTCTTGACAG___GCCACAGCAAACACAGGTGTGCAGGAACCGTTTGTCATGGAAGCCAGGGAGCCTGGGAGGCCCACACCCACCTACCATCTTGTCCCTAACACCAGCCAGTCCCAGGTGGAAGAAGATGTCAGCTCGCCACCTCAAAGGTCCTCCGAAACTATGCAGCTGAAGAAGGAGATCTCCCTGCTGAATGGGGTCAGCCTGGTGGTGGGCAACATGATCGGCTCAGGGATCTTTGTCTCACCCAAGGGTGTGCTGG	.	.	.
TALL080	PPP6R2	SELO	+/+	+/+	22:50432329	22:50206317	splice-site	splice-site	duplication	downstream	upstream	4	0	5	204	732	high	.	.	.	CTG___GACTTGTTCTTTAAGTACACCTGGAATAACTTTTTGCACTTCCAAGTGGAACTATGCATAGCCGCTATTCTCTCCCACGCTGCCCGTGAGGAGAGGACAGAAGCCAGCGGATCCGAGAGCAGGGTGGAGCCTCCGCATGAGAACGGGAACCGGAGCCTGGAGACTCCCCAGCCGGCCGCCAGCCTCCCTGACAACACAATGGTGACCCAC___CTGTTCCAGAAGTGCTGCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|ACAGGCCGACGGTCGCAAGGTCCTACGGTCAAGCATCCGGGAGTTTCTATGCAGCGAAGCCATGTTCCACCTGGGAGTCCCCACCACACGGGCCGGCGCCTGCGTCACGTCCGAGTCCACGGTGGTGCGCGACGTGTTCTATGATGGTAATCCCAAATATGAACAATGCACGGTTGTGTTGCGTGTAGCTTCCACTTTC...___GTGACGCGGCGCACGGCGCGGATGGTGGCCGAGTGGCAGTGTGTGGGCTTCTGCCACGGCGTGCTCAACACCGACAACATGAGCATCCTG	in-frame	LDLFFKYTWNNFLHFQVELCIAAILSHAAREERTEASGSESRVEPPHENGNRSLETPQPAASLPDNTMVTHLFQKCCLVQRILEAWEANDHTq|QADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVAST	.
TALL080	AC114730.3	AC114730.3	-/.	-/.	2:241809585	2:241810240	intron	intron	duplication	upstream	downstream	1	1	3	114	73	high	.	.	mismatches(1)	.	.	.	.
TALL080	FNDC3B	TNIK	+/+	-/-	3:172310881	3:171228221	splice-site	splice-site	inversion	downstream	downstream	0	1	1	42	52	high	.	.	.	CTCCGAGCCTGTTAGCTTCACCACCCACAGCTGTGCACCCGAGTGTCCTTTCCCCCCTAAGCTGGCACATAGGAGCAAAAGTTCACTAACCCTGCAGTGGAAG___GCACCAATTGACAACGGTTCAAAAATCACCAACTACCTTTTAGAGTGGGATGAG|GGTCGTCATGTCAAAACGGGCCAGCTTGCAGCCATCAAGGTTATGGATGTCACAGGG___GATGAAGAGGAAGAAATCAAACAAGAAATTAACATGTTGAAGAAATATTCTCATCACCGGAATATTGCTACATACTATGGTGCTTTTATCAAAAAGAACCCACCAG	in-frame	SEPVSFTTHSCAPECPFPPKLAHRSKSSLTLQWKAPIDNGSKITNYLLEWDE|GRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP	.
TALL080	CD74	CAMK2A	-/-	-/-	5:150404680	5:150273159	splice-site	splice-site	deletion/read-through	upstream	downstream	12	8	13	3473	25	medium	.	.	duplicates(2),low_entropy(1)	GAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACTGCCCATGCTGGGCCGGCGCCCTGGGGCCCCGGAGAG___...CCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCTGGACAAACTGACAGTCACCTCCC...___...GGAGAACCTGCGCATGAAGCTTCCCAAGC___CCCATGCAGAATGCCACCAAGTATGGCAACATGACAGAGGACCATGTGATGCACCTGCTCCAG___AATGCTGACCCCCTGAAGGTGTACCCGCCACTGAAGGGGAGCTTCCCGGAGAACCTGAGACACCTTAAGAACACCATGGAGACCATAGACTGGAAG___GTCTTTGAGAGCTGGATGCACCATTGGCTCCTGTTTGAAATGAGCAGGCACTCCTTGGAGCAAAAGCCCACTGACGCTCCACCGAAAG|GGGAGCCTTCTCGGTGGTGCGAAGGTGTGTGAAGGTGCTGGCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAAGCTGTCAGCCAGAG___ACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCG___TCCGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCT___GGTCACTGGTGGGGAACTGTTTGAAGATATCGTGGCCCGGGAGTA...GCGGATGCCAG___TCACTGTATCCAGCAGATCCTGGAGGCTGTGCTGCACTGCCACCAGATGGGGGTGGTGCACCGGGACCTGAAG___GGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTG...GGAATGGGACACTGTCACCCCGGAAGCCAAGGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCCGAAGCCCTTAAGCACCCCTGGATCTCG___CACCGCTCCACC	in-frame	ENLRMKLPKPHAECHQVWQHDRGPCDAPAPEC*PPEGVPATEGELPGEPETP*EHHGDHRLEGL*ELDAPLAPV*NEQALLGAKAH*RSTEr|GAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVARE	.
TALL080	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	5	11	12	66	28	medium	.	.	duplicates(2),mismatches(4)	CCCGGTGCCCACCTCCGCGCCGCGCGGACCCTCCGAGCCCGCGCTCAGACGCCCCAGCTCCGCCGAGAGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGG...___TGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAG___ATGCAACAGCATTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGG	.	.	.
TALL080	IL9R	WASH6P	+/+	+/+	X:156006188	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	9	9	820	315	medium	.	.	mismatches(4),read_through(4)	CTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCAAGCACCGCCCCCTGGACGAGCGGGCCCTGCAG___...CCCTCcCAGGAGAAGCTGAAGGAaTTTCCTGTGTGtGTGAGCACCAAGCCGGAGCCCGAGGACGATGCAGAAGAGGGACTTGGGGGTCTTCCCAGCAACATCAGCTCTGTCAGCTCCTTGCTGCTTTTCAACACCACCGAGAACCT___GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACG	out-of-frame	LSYELAFKKQEEAWEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|gvlqcqvpcsrapagiwlhlhgrpgpwpaetpppqdpeqapppgragpa	.
TALL080	IL9R	WASH6P	+/+	+/+	X:156006188	X:156021694	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	9	820	182	medium	.	.	mismatches(2),read_through(4)	GAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG...CTCACATATCCCAAGAGCAGGCTGACTcCCTTCCCCATTCCCACCTTTCCAGTAACcGCTGCAAGAACGGACAGACACTGCTGCAcAGAACTTGCCACGGTGTTcCATGCTGTGGCTGGTGGTTC...CTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GTAGAGCAGAGCCGGA	out-of-frame	LSYELAFKKQEEAWEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|graep	.
TALL080	IL9R	WASH6P	+/+	+/+	X:156007607	X:156021694	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	9	385	182	medium	.	.	mismatches(1),read_through(5)	CTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG...AGGGAGCAGGTCAGCCTGGTGGACCCGGAGTACCTGCCCCGGAGACACG...CCTGTTCAAGCTGTCGCCCAG___GGTGAAGAGAATCTTCTACCAGAACGTGCCCTCTCCAGCGATGTTCTTCCAGCCCCTCTACAGTGTACACAATGGGAACTTCCAG|GTAGAGCAGAGCCGGAGCCAGGTGCAGGCCATTGGAGAGAAGGTCTCCTTGGCCCAGGCCAAGATTGAGAAGATCAAGGGCAGCAAGAAGGCCATCAAG___GTGTTCTCCAGTGCCAAGTACC...GAGAAGCTGAAGGAaTTTCCTGTGTGCGTGAGCACCAAGCCG	out-of-frame	LFKLSPRVKRIFYQNVPSPAMFFQPLYSVHNGNFQ|veqsrsqvqaigekvslaqakiekikgskkaikvfssaky	.
TALL080	IL9R	WASH6P	+/+	+/+	X:156006188	X:156021681	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	9	820	182	medium	.	.	mismatches(1),read_through(4)	CTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG___GCCCTCTGATCCCACCCTGGGGGTGGCCAGGCAACACCCTTGTTGCTGTGTCCATCTTTCTCCTGCTGACTGGCCCGACCTACCTCCTGTTCAAGCTGTCGCCCAG|GATCTCCCAGCAGGTAGAGCAGAGCCGGAGCCAGGTGCAGGCCATTGGAGAGAAGGTCTCCTTGGCCCAGGCCAAGATTGAGA...CAGGAGAAGCTGAAGGAaTTTCCTGTGTGtGTGAGCACCAAGCCGGAGCCCGAGGACGATGCAGAAGAGGGACTTGGGGGTCTTCCCAGCAACATCAGCTCTGTCAGCTCCTTGCTGCTTTTC	out-of-frame	LSYELAFKKQEEAWEAL*SHPGGGQATPLLLCPSFSC*LARPTSCSSCRP|gspsr*	.
TALL080	IL9R	WASH6P	+/+	+/+	X:155997787	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	14	0	742	315	low	.	.	mismatches(1),read_through(10)	GAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCAAGCACCGCCCCCTGGACGAGCGGGCCCTGCAG___CCCTCcCAGGAGAAGCTGAAGGAaTTTCCTGTGTGtGTGAGCACCAAGCCGGAGCCCGAGGACGATGCAGAAGAGGGACTTGGGGGTCTTCCCAGCAACATCAGCTCTGTCAGCTCCTTGCTGCTTTTCA...___GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCCTCTGCCCCTGGCACCATTCCGGAACTGCCCACCTTCCAC	out-of-frame	MPQTCDGTGQMHLGr|cspvpstllqstcrnmapssraprtlacrdapatgsrastapwtsgpcspprrs*	.
TALL080	IL9R	WASH6P	+/+	+/+	X:156001508	X:156021694	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	689	182	low	.	.	low_entropy(1)	CAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG___TAACTGCTGCAAGAACGGACAGACACTGCTGCAGAGAACTTGCCACGGTGTTTCATGCTGTGGCTGGTGGTTCCAGGCTGCACGCTCCATTCTAGGAAAGG|GTAGAGCAGAGCCGGAGCCAGGTGCAGGCCATTGGAGAGAAGGTCTCCTTGGCCCAGGCCAAGATTGAGAAGATCAAGGGCAGCAAGAAG	out-of-frame	QTCDGTGQMHLGSNCCKNGQTLLQRTCHGVSCCGWWFQAARSILGK|graepepgaghwregllgpgqd*	.
TALL080	IL9R	WASH6P	+/+	+/+	X:156004565	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	1140	315	low	.	.	read_through(8)	GTGGGCGGCCTGTGTGAACCTGTCGTGCAAAGCTCACGTCACCAACTGCTGCAGTTATCTCCTGAATCAGGCTGAGGGTCTTTGCTGTGCACCCAGAGATAGTTGGGTGACAAATCACCTCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCATCTGGGAAG...CAACATCAGTTCTGGCCACTGCATCCTGACCTGGAGCATCAGTCCTGCCTTGGAGCCAATGACCACACTTCTCAGCTATGAGCTGGCCTTCAAGAAGCAGGAAGAGGCCTGGGAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCaCCTGCAGGAATATGGCTCCATCTTCACGGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCC...CCCTCcCAGGAGAAGCTGAAGGAaTTTCCTGTGTGtGTGAGCACCAAGCCGGAGCCCGAGGACGATGCAGAAGAGGGACTTGGGGGTCTTCCCAGCAACATCAGCTCTGTCAGCTCCTTGCTGCTTTTCAACACCACCGAGAACCT___GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGCCCgGCATTGCCAACGACCTCATGTACAtTGCCGACCTGGGCCCCGGCATTGCCCCC	out-of-frame	NISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWE|vfssakypapehlqeygsiftgaqdpglqrrpr	.
TALL080	IL9R	WASH6P	+/+	+/+	X:156007607	X:156021999	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	385	315	low	.	.	read_through(2)	CCAGAACGTGCCCTCTCCAGCGATGTTCTTCCAGCCCCTCTACAGTGTACACAATGGGAACTTCCAG|GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCGCCTGCAGGAATATGGCTCCATCTTCACcGGCGCCCAGGACCCTGGCCTGCAGAGACGCCCCCGCCACAGGATCCAGAGCAAGCACC...CCCTCcCAGGAGAAGCTGAAGGAaTTTCCTGTGTGtGTGAGCACCAAGCCGGAGCCCGAGGACGATGCAGAAGAGGGACTTGGGGGTCTTCCCAGCAACATCAG...GTCCCAGAGAACTACTTCTATGTGCCAGACCTGGGCCAGGTGCCTGAGATTGATGTTCC	out-of-frame	QNVPSPAMFFQPLYSVHNGNFQ|vfssakypaperlqeygsiftgaqdpglqrrprhriqskh	.
TALL080	NEU4(26920),AC114730.2(47)	RTP5	./+	+/+	2:241844333	2:241871714	intergenic	splice-site	deletion/read-through	downstream	upstream	1	13	0	179	303	medium	.	.	low_entropy(2)	CCCGGCCACACCCAGGGCGCTCCTGAAGCCGCCGCAGCTGCTGTGCGAGGCCGGGCCGACCCGCCTGGGGCGCGTGGGTGGGGCGGGAGCGCAGCCGCAGCCCGGCGGCGACACAGGCCCGGGGCCAGCCGGGGACGGAAAAA|GCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGTGCAGGCTGTGCCCCGCACCCGGGGACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCTGGTCTTGCACATCCTGCAGGACTGCTACGGGGATGGCCCCGGCCCAGCCCGGCACCCCAGGGAGGCCTATGAGGGCTGCTGTGAGGCCTGTGAGCTGGGGGTCTGCTTCCTCC...GCCCCAGACCCCGCCTGGAGCGCCAACGCCACAAAAGGCAACTTCCCCGCCACGGCCTGGGGTGGCACTGGCACCGTCTCCAGGGGCAAACCGCTGTCCACCCCTGGtGACGACCTTGGCAAGGGTGGCGTTGTCATCGCCATCCCCTTCTCCCTTG	.	.	.
TALL080	DVL1	CPSF3L	-/-	-/-	1:1337977	1:1321093	splice-site	splice-site	deletion/read-through	upstream	downstream	3	7	4	438	282	medium	.	.	low_entropy(5),mismatches(3)	TGGAGATCCGCGACCGCATGTGGCTCAAGATCACCATCGCCAATGCCGTCATCG___GGGCGGACGTGGTGGACTGGCTGTACACACACGTGGAGGGCTTCAAGGAGCGGCGGGAGGCCCGGAAGTAC...TCTCCGAGCAGTGCTACTACGTCTTCGGGGATCTCTGCAGCA___ATCTCGCCACCCTGAACCTCAACAGTGGCTCCAGTGGGACTTCGGATCAGGACACGCTGGCCCCGCTGCCCCACCCGGCTGCCCCCTGGCCTCTGGGTCAGGGCTACCCCTACCAGTACCCGGGACCCCCACCCTGCTTCCCGCCTGCCTACCAGGACCCGGGCTTTAGCTATGGCAGCGGCAGCACCGGGAGTCAGCAGAGTGAAG|GGGCCGGCCAGGACGTGGGCCGAAGCTGCATCCTGGTCTCCATTGCGGGCAAGAATGTCATGCTGGACTGTGGAATGCACATGGGCTTCAATGACGAC___CGACGCTTCCCTGACTTCTCCTACATCACCCAGAACGGCCGCCTAACAGACTTCCTGGACTGTGTGATCATTAG___CCACTTCC...___ATTAAAGTGGGCTCAGAGTCTGTGGTCTACACG___GGTGATTATAACATGACCCCAGACCGACACTTAGG___AGCTGCCTGGATTGACAAGTGCCGCCCCAACCTGCTCATCACAGAGTCCACGTACG	in-frame	SEQCYYVFGDLCSNLATLNLNSGSSGTSDQDTLAPLPHPAAPWPLGQGYPYQYPGPPPCFPPAYQDPGFSYGSGSTGSQQSE|gAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF	.
TALL080	DVL1	CPSF3L	-/-	-/-	1:1337977	1:1315618	splice-site	splice-site	deletion/read-through	upstream	downstream	3	3	1	438	403	low	.	.	duplicates(1),low_entropy(1),mismatches(1)	GCTTGCTGAAGCACGGCTTCCTGCGGCACACGGTCAACAAGATCACCTTCTCCGAGCAGTGCTACTACGTCTTCGGGGATCTCTGCAGCA___ATCTCGCCACCCTGAACCTCAACAGTGGCTCCAGTGGGACTTCGGATCAGGACACGCTGGCCCCGCTGCCCCACCCGGCTGCCCCCTGGCCTCTGGGTCAGGGCTACCCCTACCAGTACCCGGGACCCCCACCCTGCTTCCCGCCTGCCTACCAGGACCCGGGCTTTAGCTATGGCAGCGGCAGCACCGGGAGTCAGCAGAGTGAAG|GTAGATGATGAGCTGGAGATCAAGGCCTACTATGCAGGCCACGTGCTGGGGGCAGCCATGTTCCAGATTAAAGTGGGCTCAGAGTCTGTGGTCTACACG___GGTGATTATAACATGACCCCAGACCGACACTTAGG___AGCTGCCTGGATTGACAAGTGCCGCCCCAACCTGCTCATCACAGAGTCCACGTACGCCACGACCATCCGTGACTCCAAGCGCTGCCGGGAGCGAGACTTCCTGAAGAAAGTCC	out-of-frame	LLKHGFLRHTVNKITFSEQCYYVFGDLCSNLATLNLNSGSSGTSDQDTLAPLPHPAAPWPLGQGYPYQYPGPPPCFPPAYQDPGFSYGSGSTGSQQSE|gr*	.
TALL080	DVL1	CPSF3L	-/-	-/-	1:1337977	1:1319524	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	438	395	low	.	.	.	TCTCCGAGCAGTGCTACTACGTCTTCGGGGATCTCTGCAGCA___ATCTCGCCACCCTGAACCTCAACAGTGGCTCCAGTGGGACTTCGGATCAGGACACGCTGGCCCCGCTGCCCCACCCGGCTGCC...CGGGACCCCCACCCTGCTTCCCGCCTGCCTACCAGGACCCGGGCTTTAGCTATGGCAGCGGCAGCACCGGGAGTCAGCAGAGTGAAG|CCACTTCCACCTGGACCACTGCGGGGCACTCCCCTACTTCAGCGAGATGGTGGGCTACGACGGcCCCATCTACATGACTCACCCCACCCAGGCCATCTGCCCCATCTTGCTGGAGGACTACCGCAAGATCGCCGTAGACAAG	out-of-frame	GPPPCFPPAYQDPGFSYGSGSTGSQQSE|atstwttaghsptsarwwattapst*	.
TALL080	AC133528.2	ING5	+/+	+/+	2:241690653	2:241704653	splice-site	splice-site	deletion/read-through	downstream	upstream	5	6	1	120	372	medium	.	.	low_entropy(2)	AGCACAGGTAGCAGAATACCAGCCAGCCTCCTGTGGCTCACAGCATTAAGATATTTAATCATCTGACATTACATGAAGTCCAGTGTTAGGCAGGCAGGAGCTGCTCCCGTGACTCAGTGACATC...CCTAGCAGTTCTCTTGGTGTTCCTGCGTGATCAAAGGATGACTGCCACACCCCAGCCTGCTGACCTCAGCCCTGGCGTGGGCATAGGAGGGTCTGCGTGGCTGAGCATCCAGTGTCCTTCGTACTGCCACTGACAGCCTCAGGCCTGATTTCCAGCACTGTCTGTCCAGGAGCAATGGGAGCAAGAGTCACTCCACGAGACTCTGGAGGCCTGATAG|GTATCGAGAACCTTCCCTGCGAACTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAG___ATAAGAAAGCAGAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGACGACAAAGTGCAGCTGGCCATGCAGACCTACGAGATG___GTGGATAAACACATTCGAAGGCTTGATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAAGGACAAGATGGAGGGCAGTGATTTTGAAAGCTCCG	.	.	.
TALL080	RGS1(29905),RGS13(26202)	RGS13	./+	+/+	1:192609936	1:192658201	intergenic	splice-site	deletion/read-through	downstream	upstream	2	3	6	705	634	medium	.	.	duplicates(1),mismatches(2)	AAAAAATGCCATGGTAGAGATGAAGAGAACCCAAAACCTCTTTTTCTGTCCTTGTTTCCTTTTCTGAAACAAGTGACTAAATACTCAAAGTCCATGGGGAATATGACAGATCCATTCTAAAAACT...CTTTGTATAAGTTGGAAGCATAGTATCACAAAGTGGCATACAGGGGTAAATAGATGCCTGATTTGCTTCCAGTCAGCCAGGCCCAATAATGTCCTTtAAGCCTGCAGAACTATTGCCTCTGATGTTCCTCCACCACCCTGAAACAGAACCAATAGCGGCTGATCTTGTGTCTACCCGCAACCTTCTCTTTCGTGACAAAtCAACATGCAAGTGGAATCCCAAG|ATGGTCCAGTAGTCTATGCAGCATATTTAAAAATGGAGCACAGTGACGAGAATATTCAATTCTGGATGGCATGTGAAACCTATAAGAAAATTGCCTCACGGTGGAGCAGAATTTCTAGGGCAAAGAAGCTTTATAAGATTTACATCCAGCCACAGTCCCCTAGAGAG___ATTAACATTGACAGTTCGACAAGAGAGACTATCATCAGGAACATTCAGGAACCCACTGAAACATGTTTTGAAGAAGCTCAGAAAAT...GGGATTCCTACCCCAGATTTCTAAAGTCAGAAATGTACCAAAAACTTTTGAAAACTATGCAGTCCAACAACAGTTTCTGACTACAACTCAAAAGTTTAAATAGAAAACAGTATATTGAAAGTGG	.	.	.
TALL080	CTC-550B14.7	EPS8L1	+/+	+/+	19:55046898	19:55078088	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	7	27	11	medium	.	.	mismappers(2)	GGAAGTTGCAGTGAGTGGAGATCATGCCATTGTACTCCAGCCcGGGCGACAGAGCAAGACTTCATCTCAAAAATAA|CCCAGAAGCTGCCCCAAAGCCAAGCGCCAAGTCTATCTATG___...GAGGAAGCGTTACTCCACAGTTGTTATGGCTGATGTATCCCAGTACCCAGTC...___CACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGCATACCGTGGAGGATGCCTCCAGGAAGTTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTC	.	.	.
TALL080	CTC-550B14.7	EPS8L1	+/+	+/+	19:55042920	19:55078093	splice-site	CDS	deletion/read-through	downstream	upstream	1	1	5	34	11	low	.	.	mismappers(2)	GTGAAATCAGAAGACGGGAAGTGGCTGAGGGGAACGTCTTTTCTCTCTCCTGCTCAGCCCGAAGTGAACAGGTAGCATCAG___AGATGAGATCCTGGATTGAATGACTACTATGGAAAGTGATTGACCAAG___GGCCGCTCACCATGGCAGCCGGCTCCATCACCgCCAGCCAGCGAGAGGGCAAGACAAGAGGGCTGACGAGGGACGCTACCATCACAGAG|AAGCTGCCCCAAAGCCAAGCGCCAAGTCTATCTATG___AGGAAGCGTTACTCCACAGTTGTTATGGCTGATGTATCCCAGTACCCAGTCAAT___CACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGC...GGAGCTGGAGTCGTACCCACTGGGCGCCATCGTGCGCTGTGACGCGGTGATGCCACCCGGCAGGAGCCGCTCGTTGCTGCTGCTCGTGTGCCAGGAACCCGAGCGCGCGCAGCCCGACGTGCAC	.	.	.
TALL080	HMG20B	HMG20B	+/+	+/+	19:3575824	19:3574832	exon	intron	duplication	downstream	upstream	0	2	8	102	75	medium	.	.	duplicates(1)	CCTGGATGAGGCCGAGAGAGAGAAGCAGCAGTACATGAAGGAGCTGCGGGCGTACCAGCAGTCTGAAGCCTATAAGATGTGCACGGAGAAGATCCAGGAGAAGAAGATCAAGAAAGGTGGGAGGGGTCGGGCGCGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGTGTATCACCTGAGGTCAGACCAGCCTGGCCAACATAGTGAAACCCTCCCCCTCTACTAAAAATACAAAAATTACCTGGGCGTGGTGGCGGGTGCCTGTAA|TCTCAGCCTCTCAGGTAGCTGGGATTACAGGCGCGTGCTACCATGCC...GCTAATTTTTGTATTTTTAGTAGAAATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCTTGACCTCAAATGATCCGCCCACCTCAGCCTCCCAAAGTATTGATATTAAAGGCGTTAGCCACCGTGGCCAGCCCATGACCAGCTTTTGGGGGCGCGGCTAGCAAGAGGCAAGACAGATTGAAAACTGGATGACCAACAAAGATATGTCTAAGAAGTCAGGATGGGGCCTGGATTTTTTG	out-of-frame	LDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKggrgrarwltpvipalweaeagvspevrpawpt**npppllkiqklpgrgggcl*|sqplr*	.
TALL080	NAA16	NAA16	+/+	+/+	13:41376075	13:41373463	3'UTR	intron	duplication	downstream	upstream	0	3	6	154	44	medium	.	.	duplicates(1)	CAACCCCACTGTATTATTTTCTTTAGATTCTGATTTCAGGATCTGTGCTTTGATTCCTTGTCTGTTTTATCGTATATTTGCTTGCTTTTTAATTAAAGCACATCAGTTTTAAAGTGTTAACTATATGTTAACAATATGGAGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCCAGACTGGCGGATCACCTGA|GGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCATAAAGGGTTTTCAGTAGGTTTTTTTTTTTTCAAAGGACAGATCAAAAACAAAAAATCCAAATGTTTTTGTTTTTATAGTGTCTAATCATAGTAATCTTCCAGACATTGTGAGCAAAGTTCTATCTCAAGAAATGCAGAAAATATTTGTCAAAAAGGATTTGGAAAGTTT	.	.	.
TALL080	TPCN2	RP11-554A11.9	+/+	+/+	11:69079020	11:69159446	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	1	116	53	medium	.	.	.	CAGAACTCCTCTATGATGAAGAAGACCTTGAAATGCATCCGCTGGTCGCTGCCGGAAATGGCCAG___TGATGATTCCTGCGTATTCCAAGAACCGGGCCTATGCCATCTTCTTCATAGTCTTCACTG...C___GTGTTCCTGGTGCTGGATGCAGATGTGCTGCCTGCTGAGCGTGATGACTTCATCCTGGGG___ATTCTCAACTGCGTCTTCATTGTGTACTACCTGTTGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG|GACTTGCTGTGCTCAGATCCTCCATTCAAGAGAGCTACAGACACGGGGGTGCTGGTGAGCAGGAGCCGAGACCATCTGGGGTGGGACCGACCAAGAGTTTGAGGTGTCCAGGGGGTGACGTGAAGATGACCTATcGCAGAGGGTCCCTTCTCATTCACGCTCTGAAGTCTGCAC	out-of-frame	VFLVLDADVLPAERDDFILGILNCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLL|dllcsdppfkratdtgvlvsrsrdhlgwdrprv*	.
TALL080	TPCN2	RP11-554A11.9	+/+	+/+	11:69062990	11:69159446	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	0	131	53	medium	.	.	.	GCTGCTGGATGGCGGAACCCCAGGCGGAGTCGGAGCCCCTGCTGGGCGGGGCCCGCGGCGGTGGCGGCGACTGGCCGGCGGGGCTGACCACTTACCGCAGCATCCAAGTCGGCCCTG___CCCCTGC...CCGTCCCTTCTTCCTGCTGCAGAACTCCTCTATGATGAAGAAGACCTTGAAATGCATCCGCTGGTCGCTGCCGGAAATGGCCAG|GACTTGCTGTGCTCAGATCCTCCATTCAAGAGAGCTACAGACACGGGGGTGCTGGTGAGCAGGAGCCGAGACCATCTGGGGTGGGACCGACCAAGAGTTTGAGGTGTCCAGGGGGTGACGTGAAGATGACCTATcGCAGAGGGTCCCTTCTCATTCACGCTCTGAAGTCTGCACAGGGGCAGGGGCTACCG	out-of-frame	RPFFLLQNSSMMKKTLKCIRWSLPEMAr|tccaqilhsrelqtrgcw*	.
TALL080	TPCN2	RP11-554A11.9	+/+	+/+	11:69081499	11:69159446	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	2	74	53	medium	.	.	duplicates(1),mismatches(1)	CCCGAGTACCAGTCTCCGTTTCTGCAGAGCGCCCAGTTCCTCTTCGGCCACTACTACTTTGACTACCTGGGGAACCTCATCGCCCTGGCAAACCTGGTGTCCATTTGC___GTGTTCCTGGTGCTGG...GTGCTGCCTGCTGAGCGTGATGACTTCATCCTGGGG___...GTCCTGCTG___GAGGCCGGAGATGGTGGGCCTGCTGTCGCTGTGGGACATGACCCGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|GACTTGCTGTGCTCAGATCCaCCATTCAAGAGAGCTACAGACACGGGGGTGCTGGTGAGCAGGAGCCGAGACCATCTGGGGTGGGACCGACCAAGAGTTTGAGGTGTCCAGGGGGTGACGTGAAGATGACCTATcGCAGAGGGTCCCTTCTCATTCACGCTCTGAAGTtTGCAC	out-of-frame	VLLEAGDGGPAVAVGHDPHAEHAHRVPLPAYHPQHE|glavlrstiqesyrhggageqeprpsgvgptkslrcpggdvkmtyrrgsllihalkfa	.
TALL080	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	3	4	0	233	33	medium	.	.	duplicates(3),mismappers(3),mismatches(2)	CAGCCTTAGACTATTTTTCAAACA___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTG...AGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCAC	.	.	.
TALL080	AC114730.3	NEU4	-/.	+/.	2:241809585	2:241810240	intron	intron	duplication/5'-5'	upstream	downstream	1	2	3	114	73	medium	.	.	mismatches(1)	.	.	.	.
TALL080	TCF25	TCF25	+/+	+/+	16:89903456	16:89894867	intron	intron	duplication	downstream	upstream	0	2	4	212	378	medium	.	.	.	CCTCCCTcGAAGGCAGGcGGGCTGCCAAGAAGCCGCTGCCACTTACCCCAGAACACTGGAGATCACTGCAGGCTCTGCCCTCGGGGCCCGTTCCCCTACATGGCGGCCTCTGCCCTCAACCTGCAGTGCTGGCTCTTCCACTGGGCACAGGTGGCCTCCGCTCCCACCAGCCTGCCATGGGGTCCAGTCTTTGTGATTAAAACATCCAACCGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGAGGATCGCTTGA|ACTCCTGATATCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGGTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCTCCGCTGGTTTTAAATGTCTGAAAAAAAGGCATGCCTGGGAGCTGGGGCCTTGCTGAGTGCCTTTCCTCCAGGGCTGTCCTCCCTTCTGGTAGGTTCTGCTCCAGACGAGCCCTTACCACGTTGACTCACTCCTGCAGCTCAGCGATGCCTGCCGCTTTCAAGAGGATCAGGAGATGGC...ATGGAATGTGCGTTCCACCCCCTGTTCAGTCTCACCAGTGGGGCCTGCCGGCTGGATTACCGCAGACCCGAGAACAG___GAGCTTCTACCTGGCCCTCTACAAGCAGATGAGCTTCCTGGAGAAGCG	.	.	.
TALL080	ADAT1	ADAT1	-/-	-/-	16:75599312	16:75601151	3'UTR	intron	duplication	upstream	downstream	0	2	3	31	16	medium	.	.	.	AAAGAATGAAGGCAACAAAGGAAACAGCCAAGAGAATCAAAGATCTAGTAACACTGTTTAGATGTCTCAATTATGTGAGACAGATTCCTGTTGTTATTTTGATTAAGCCTGTTTGTGTTGGTTTTCTGACTTACAATTGAAAGAGTTCTGTCCAAAAAGCCAAAAGGTGGCCAGGCTTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAAGCCCAGGCAGGCAGATCACTTGAGG|CCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCTTCGGCCTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCACCATGCCTGGCCTAGAAAACTTTTAAACCAAAAAAGTAGACAGTTGTTTTTATTTTATCTGATTCCACTAGGACCATAGAAACCTAGAATTCTGTTCATTCTTAACTGTTTTAATTCATGTTGCTTTCTCGTGAATTCCCTACAAAGGAGACAGAGTTGCTC	.	.	.
TALL080	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1094248	splice-site	splice-site	inversion	downstream	downstream	1	0	4	1460	734	medium	.	.	duplicates(1)	CTCAGCCCTGCACCTGAGCGCGGGGCCCGGCGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GAGATGGAAATCCAAGAGAAAACAGCCCATTCCTCAACAATGTCGAGG	out-of-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|emeiqektahsstms	.
TALL080	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1076812	splice-site	splice-site	inversion	downstream	downstream	0	1	3	1460	611	medium	.	.	duplicates(1)	CGGGGCGTGGCGGCGGCGATGGGGAAACTGCAGTCGAAGCACG___CCGCCGCCGCCCGCAAGCGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|GTGTTTGGCCACGGGAAGGCCAACGGGGAGCCCACGTGGGCGCTGCTGCTGACAGTCCTCATCTGCGAGACTGGCATCCTCATCGCCTCTCTGGACAGCGTGGCCCCGATCCTCTCCAT___GTTCTTCCTCATGTGCTACCTGTTCGTGAACCTGGCCTGCGCCGTGCAGAC	in-frame	MGKLQSKHAAAARKRRESPEGDSFVASAYASGRKGAEEAERRARDKQ|VFGHGKANGEPTWALLLTVLICETGILIASLDSVAPILSMFFLMCYLFVNLACAVQ	.
TALL080	SLC12A7	NKD2	-/-	+/+	5:1057471	5:1032152	splice-site	splice-site	inversion	upstream	upstream	1	1	2	1110	1872	medium	.	.	.	GGAACACCGCGTCCCACACCGCGGCGGCAGCCAGGACCCAAGCGCCGCCTACGCCAGACAAGGTGCAGATGACCTGGACCAGGGAGAAGCTGATCGCTGAGAAGTACAGGAGCAGAGACACCAGCCTATCTGGTTTCAAAGACCTCTTCAGCATGAAGCC|GAGCTGCCCAATGGGGACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTACAGG___TGGCACTCCCCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGGGACAACTCCTCAGCGCAGATGACGGAGAGAGGGCAGCAAACCGCGAGGGCCCGCGAGGACCGGGCGGGCAGCGCCTCAACATTGAC___GCACTCCAGTGCGATGTCTC	out-of-frame	NTASHTAAAARTQAPPTPDKVQMTWTREKLIAEKYRSRDTSLSGFKDLFSMKp|scpmgtprrglsgrtsvpyrwhsplrklraastrdnssaqmtergqqtararedragsastlthssams	.
TALL080	NKD2	SLC12A7	+/+	-/-	5:1009560	5:1065478	splice-site	splice-site	inversion	downstream	downstream	0	1	1	1460	796	medium	.	.	duplicates(1)	CGGAGAGAGAGCCCGGAAG___GGGACAGCTTCGTGGCGTCCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAG|AACATACGGTCCCTAATGAGCACAGAGAAGACCAAGGGCTTCTGCCAGCTGGTGGTCTCGTCCAGCCTGCGGGATGGCATGTCCCACCTGATCCAGTCGGCCGGCCTGGGCGGCCTGAAGCACAACACGGTGCTCATGGCCTGGCCCGCATCCTGGAAGCAGGAGGACAACCCCTTCTCCTGGAAGAACTTTGTGG___ACACCGTCCGCGACACCACCGCCGCG	in-frame	RRESPEGDSFVASAYASGRKGAEEAERRARDKQ|NIRSLMSTEKTKGFCQLVVSSSLRDGMSHLIQSAGLGGLKHNTVLMAWPASWKQEDNPFSWKNFVDTVRDTTA	.
TALL080	SNX21	SNX21	+/.	+/.	20:45838036	20:45838509	intron	intron	duplication	upstream	downstream	2	0	2	10	8	medium	.	.	.	.	.	.	.
TALL080	EML3	EML3	-/.	-/.	11:62604640	11:62606625	intron	intron	duplication	upstream	downstream	2	0	2	70	34	medium	.	.	.	.	.	.	.
TALL080	CHUK	RP11-316M21.7	-/+	+/+	10:100191891	10:100190299	intron	splice-site	duplication/3'-3'	downstream	upstream	2	0	2	92	45	medium	.	.	.	GGATGATAGCCACTATTAGCTTAGAATGACATTCTGATTCAGCTCTTATCCAACAGATGGAAAAATTATGGTCAAACAGTTCCCAATCCTTGGTAGTTAAGTACCACAGGTACATTATAATTGAAATCAATTTTCTTATACAATGTATTCTGGCTGGACATGGTGGCTCATGCCTGTAATTCCAGCACTTTTGGAGGCCGAGGCAG|GtGTGAGCCACCATGCCTGGCCACTGCTATTTTTCTTAATGAAAGAGGAAATGTACAGAATTGACATTAAGACTAAATGCAGGAAAAATTGATTCAGTAGACATTTTATGGTAATTTCCTCAAGTTTTAACAAATCAGTAGTTTATAGTAACCAAATCTTAACACACACTTATTATTACAACTATATTAACATAATTTATTTTCTATTCGGGAGGTACCATATCTGAATTAAAGTACAAGTCCCATCTTAATGGAGAAAAT	.	.	.
TALL080	TMEM180	TMEM180	+/.	+/.	10:102469798	10:102471568	intron	intron	duplication	upstream	downstream	0	2	1	2	18	medium	.	.	.	.	.	.	.
TALL080	RAD9A	RAD9A	+/.	+/.	11:67393258	11:67394958	exon	intron	duplication	upstream	downstream	2	0	1	30	5	medium	.	.	.	.	.	.	.
TALL080	FBXW8	FBXW8(378),TESC(7397)	+/.	./.	12:117029844	12:117031526	3'UTR	intergenic	duplication	upstream	downstream	1	0	2	24	13	medium	.	.	.	.	.	.	.
TALL080	KLHL18	KLHL18	+/+	+/+	3:47338607	3:47335713	exon	intron	duplication	downstream	upstream	0	2	1	10	36	medium	.	.	.	GGCAAGTCCCTCTCCTCTTTCTGGCTGGTTCAGGGGGTCAGTTATCATGTCCCTGAAAGGGACATTCTGTGGATCAGTTTGATTACTATGTACATTTAAAAGGTAGCAGCAAGCCAGGTATGGTGGCTCACGCCTATAATCCCAGCACTTTGCGAGGCCAAGGAGGGCGGATCACCTAA|GGCCAGGCTGGTTTTGAGTTCCTGACCTCAAGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCTGGCCCAGTTTTGTTTTTAATTGAAGGTTAATGAGAGTTGGGTACTAGCTGCTGCTTGTTAATCAGAGGGCCTGGAACAGGTAAATCCTC	.	.	.
TALL080	OAZ1	PPP1R12C	+/+	-/-	19:2269744	19:55096335	splice-site	splice-site	inversion	downstream	downstream	1	1	1	1884	335	medium	.	.	.	CGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG|CTTCGGAACCAAAAAGAAGCTTCCCAGAGCCGGGGCCAGGAGCCCCAAGCGCCCTCTAGCAGCAAACACAGAAG___GAGCTCTGTGTGTCGTCTGAGCAGTCGCGAGAAGATTTCCCTCCAGGACTTGTCCAAG	out-of-frame	MVKSSLQRILNSHCFAREKEGDKPSATIHASRTMPLLSLHSRGGSSSEs|fgtkkklpragarspkrplaantegalcvv*	.
TALL080	ACTR5(32857),PPP1R16B(328)	NUCB2	./+	+/+	20:38805377	11:17301742	intergenic	splice-site	translocation	downstream	upstream	0	2	0	38	279	medium	.	.	.	CCTTCAGACTCAGGCCGCGCAGGCCTTCAAGCTAGGAACCCTGAGTTCCTGGCCCTGGCATTCATTCTGTGTGACCTTGAGCAGGTTACCACTCCTCTCTGG|AGAGTGGGAGGCTAAGCAAAGA...GAACTGAAAAGGCAAGAAGTAGGAAGGTTAAGAATGTTAATTAAAGCTAAGTTGGATTCCCTTCAAG___ATATAGGCATGGACCACCAAGCTCTTCTAAAACAATTTGATCACCTAAACCACCTGAA	.	.	.
TALL080	DYSF	MGAT4A	+/+	-/-	2:71539239	2:98726567	splice-site	splice-site	inversion	downstream	downstream	0	2	0	32	114	medium	.	.	duplicates(1)	CGAAAATCTCTGCCCCTGGAGGAGAAATAGAAG|GAAGGGAAAAGGCCGAGGCATCAGCGTGTGAAGACCGCAAAGACGATCCCGAGTACAGTTGTGAACAGCATTGCTGCTAGGCTCCTCCTGC...TTATTGGCCTAGAGCCAGGAGTACTGCATTCAGTTGACTTTCAGGGTAAAAAGAAAACAGTCCTGGTTGTTGTCATCATAAACATATGGACCAGTGTGATGGTGAAATGAGATGAGGCTCCGCA	out-of-frame	KISAPGGEIE|grekaeasacedrkddpeysceqhcc*	.
TALL080	ZNF445	LINC00694	-/-	-/-	3:44439797	3:44421813	3'UTR	splice-site	deletion/read-through	upstream	downstream	0	27	0	169	47	low	.	.	duplicates(5),low_entropy(2),mismatches(3)	CTGAGCTCTCATAACCACAACAAAAACCAGAGCCACTTGTTCGTCCTTTCACTGAAGCCCAACAGACTGGCGTGGGTGCCCGCTTTGCTTTCCCTAGAAGGCCTCAT|GTATGTCTAGAGGTCAGTTTGGACAGGGACAGGAACCTCTAGACATGTTTTTCTGGGTGAACGAGATAAGCGGAGAAATCACCTACCCCCCGCAGAAGGCAGATGCACCTGCTGTTTCTCCTGAGAGCCCACAAAAGAAGCCCCCATTTCAGCCCAGGAGTGTGCAGGAGGCTCCTTGCAGTCCCCAGGGCCCGCCTGCACAGAGGCCTGCCCTTGCACCTCCATCTAAGCCTTCTCTGAAAGACTCAGGCTCAAGAAACCCCTGCCCATCTGCACCCACCTGGGCCAGGCCAAAGCCGGAGGAGTGAGGAGCCCCCACCGTTCTCAGCAATCCCTGTCACCATCTCATCACCAGGAGTGACTCTGCCCATACTCGGACCCCTGGGACCAGCCCTTCAGCCACCGGTCTCGACCTCTCCTCTCAGCCCTTCTGCACCCTGGGCCTTCACCTGCAAGCTGAACAATGTCCTTACTGGGAATAACTGGTTTTCCTTTTGAATCTTAAGAAAATTTG	.	.	.
TALL080	ZNF644	RP4-665J23.1	-/-	-/-	1:90918052	1:90832196	splice-site	splice-site	deletion/read-through	upstream	downstream	3	1	5	252	14	low	.	.	low_entropy(1),mismappers(1)	GTGCACTGTTTCCGCTGCCCTCGTTTGTCTAATTGGCCCAGACGCTCCACCAGCGCGAAGCTTCCCGGGAGCTCCTCGCTGGCCACCCCCGCGGCCCGCAGCCCGGCAGAGGCGGGAAAGCAGCG...GGACGCCGCGTGCTCCCAACGTCGCCCCGGTTTGACGCACACGGCACCAAACT___GTTTGATTTAATTTTGGATGAGATCGTTCTTGCAGCAAGATGTTAATAAGACAAAATCTAG___CCTTAGATTGTAAGCAAAAGAAATCAAGGTCAAGATCTGGAAGCAAGAAGAAAATGCTAACATTACCTCATGGTGCTGACGAGGTTTACATTCTCCGATGCAG|GCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGGGGGCAATTAGTCACCACCCCACGGCGCTGCTGAGGACAGCACGGCAGCAGACAAGTCAGGCCCATGAGGAAGAAGAGGCTTTGCACTGCTCTCCAGACAACTTTTCAAACAACAAGAGAGGATATTTGAGCACATTAGGTTTTGTGTCTTCATTCTGG	out-of-frame	MLIRQNLALDCKQKKSRSRSGSKKKMLTLPHGADEVYILRCr|llm*	.
TALL080	ZNF644	RP4-665J23.1	-/-	-/-	1:90937485	1:90832196	splice-site	splice-site	deletion/read-through	upstream	downstream	4	0	2	252	14	low	.	.	mismatches(2)	CAAAAACTTGCATCAAGTGATGACTTTATATCTCAAAATGTTATACCTCTTGAAGCATACCGTAATGGCCTAAAGACTGAAGCTCTGTCAGTGTCTGCATCAGAAGAAGAAGGGCTGAATTTCTTAAATGAATATGATGAAACAAAACCAGAACTGCCCAGTGGGAAAAAGAATCAGTCTCTTACACTCATAGAACTTCTTAAAAATAAAAGGATGGGAGAAGAAAGGAATTCTGCTATTTCTCCTCAAAAGATCCATAATCAGACAGCAAGAAAGAGATTCGTTCAGAAATGCGTTCTTCCATTAAATGAGGATAGTCCGTTGATGTATCAGCCACAAAAAATGGACTTGACTATGCACTCAG|GCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGGGGGCAATTAGTCACCACCCCACGGCGCTGCTGAGG...TTGCACTGCTCTCCAGACAACTTTTCAAACAACAAGAGAGGATATTTGAGCACATTAGGTTTTGTGTCTTCATTCTGGGTACCTACTCTTCATATTATTCTACCAACTTAATACATAAACATA	out-of-frame	QKLASSDDFISQNVIPLEAYRNGLKTEALSVSASEEEGLNFLNEYDETKPELPSGKKNQSLTLIELLKNKRMGEERNSAISPQKIHNQTARKRFVQKCVLPLNEDSPLMYQPQKMDLTMHS|gf*	.
TALL080	PFKFB3	Y_RNA(8347),RP11-563J2.2(23509)	+/+	./+	10:6226365	10:6254178	splice-site	intergenic	deletion/read-through	downstream	upstream	5	1	2	801	14	low	.	.	duplicates(1),low_entropy(1)	GGAATCCATCTACCTGAACGTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAG___GATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCGCTAGCCAGCCCCGAACCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCATGTGGCCTCCACCTCGGCCGCCCTGCCCAGCTGCCTGCCCCCGGAGGTGCCCACGCAGCTGCCTGGACAA|GAG?TAAAGAGTGGAATTCCTGGAAGGGACCCTGAGCCACCAGTCCAGCCCCCTGAAGGGCAGAGCATTCTCTGGATACCCAGAGAGGTGACCGTGGCATCCAGGAGTGGACCCGGGGCTGCACCAAGCATCCCGGAGCCCAGACTGGTCTCGCTTCCTCACCTTTCTGGCTCTGCGGCAAGCGGCTCCTAATGATACCTGGCTGAAAGAG	out-of-frame	ESIYLNVESVCTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPGQ|e?ksgipgrdpeppvqppegqsilwiprevtvasrsgpgaapsipeprlvslphlsgsaasgs*	.
TALL080	FBXW11P1(6844),AP000253.1(18149)	SOD1	./+	+/+	21:31635444	21:31663790	intergenic	splice-site	deletion/read-through	downstream	upstream	3	1	3	12	614	low	.	.	duplicates(2),low_entropy(1),mismatches(1)	GGAAGGGAGGCCTAATGGGAGGTGTTTAGGTCATGAGGGCTTTATCCTTGTGAGTGGATTAATGCTGCACTTGAACAAGCGATTTGGAGTGGGTTCATCATCTTCTGCACTTTTGCCATGTGAGGAGCAGCGTTCTTCCCCTCTGAAGGATGCAGCCAAACTTCGCAGCACCCCAGCACCTTGATCTTTCACTTCCCAGCCTTCAGAGTT|GAAAGTAATGGACCAGTGAAGGTGTGGGGAAGCATTAAAGGACTGACTGAAGGCCTGCATGGATTCCATGTTCATGAGTTTGGAGATAATACAGCAG___GCTGTACCAGTGCAGGTCCTCACTTTAATCCTCTATCCAGAAAACACGGTGGGCCAAAGGATGAAGAGAG___GCATGTTGGAGACTTGGG	.	.	.
TALL080	SLC35A3	HIAT1	+/+	+/+	1:100015420	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	3	3	1	405	434	low	.	.	duplicates(1),low_entropy(1)	CTTATTTAGTGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCAT...TGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTGCTGCTAACGGTGTTTTTCACATGTGCCCCAATTCCTTTAATGAAGATCAGCCCATG___GTGGTACTTTGCTGTTATCTCTGTTTCTGGGGTTTTTGCAGTGACTTTTTCTGTGGTATTTGCATACGTAGCAGATATAACCCAAGAGCATGAAAGAAGTATGGCTTATGGACTG___GTTTCAGCAACATTTGCTGCAAG	in-frame	li*WPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQ|PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLS	.
TALL080	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	2	2	262	434	low	.	.	mismatches(1)	CTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG___GTTTCTTTGGAAGTATATTT...GTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTCTTG	out-of-frame	VVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTs|lke*	.
TALL080	SLC35A3	HIAT1	+/+	+/+	1:100017815	1:100058666	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	262	478	low	.	.	.	AAAAAATCAAATGATTGTAAGGTTTTATGTTAAAAGCTCTCCTTTGCAGTCCCAAAAATGATATTGGTTGCATTTTTAAGTTATGGTCTAAGAGTGGGCTCTCAATATGTTTATGTAAAATGTT...GTTGTTCTTCAG___GCACTTGGAGGCCTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTATCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAG|GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCC	out-of-frame	VVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTr|yymkpflnihf*	.
TALL080	SLC35A3	HIAT1	+/+	+/+	1:100011533	1:100049909	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	414	434	low	.	.	duplicates(1),mismatches(1)	CTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTG___GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAG___GGTTTGTTGTCATTCCTTAGTGCCCCGCTTATTGGTGCTCTTTCTGATGTTTGGGGCCGAAAATCCTTC	out-of-frame	LDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL|asrnrfs*	.
TALL080	RUNX3	CLIC4(28966),RUNX3(26221)	-/-	./-	1:24964514	1:24873290	splice-site	intergenic	deletion/read-through	upstream	downstream	1	5	1	713	20	low	.	.	duplicates(1),mismappers(1)	GCTAGACATTCCTGTGGGACCGGGAATCCAAATTCTTGG___...CCTGAAGGGCTGAAAATTCTCGCCTTCTTCAGAGCGGGGCATGGCATCGAACAGCATCTTCGACTCCTTCCCGACCTACTCGCCGACCTTCAaCCGCG|TTGCTTGGAACACTGAACCAGGAGTCAAGACCAAGAGATGGGTTCTAGGTGTGGATTTGACGCTGTGTGACCTTGG___CCCAGGCAACAGAGGCACAGAGAGATGGAGCGGCTTGCCCAAGGCTACACGGCCAGCCAGACAGAAGGACTAGAGCTCAACCACCAGGCAATG___ATCCCAGAGAAGGG...ACCTCCTGGGCTCAAGCCATCCTCCCCACTCAGCCACCCAAGTATCTGGGACTACAGTGTGTGCCACCATGCTCCGCTGGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTGAGACAGAGTCTCGC	out-of-frame	MASNSIFDSFPTYSPTFnR|vawntepgvktkrwvlgvdltlcdlgpgnrgterwsglpkatrparqkd*	.
TALL080	CBFA2T3	GALNS	-/-	-/-	16:88879270	16:88841971	splice-site	splice-site	deletion/read-through	upstream	downstream	1	3	3	906	40	low	.	.	duplicates(1),low_entropy(2),mismappers(1)	CCCCGCTCCCGCCGCGGCCCGGCCCCGCAGCAGCTCCGCCGGTCCCGAAGGGCCTCAGCTAG___ACGTGCCTCGCGAGTTCCTGCCGAGGACCCTCACCGGCTACGTGCCTGAGGACATCTGGAGGAAGGCTG___AAGAGGCCGTGAATGAGGTGAAGCGGCAGGCCATGTCGGAGCTGCAGAAAGCCGTGTCGGACGCGGAGCGCAAAGCGCACGAGCTCATCACCACGGAGCGTGCCAAGATGGAGCGGGCCCTGGCCGAGGCGAAGCGGCAGGCCTCCGAGGACGCCCTGACGGTCATCAACCAGCAGGAGGACTCCAGCGAG|CGAGGGCGGCACTGCTCACAGGACGGCTACCCATCCGCAATGGCTTCTACACCACCAACGCCCATGCCAGAAACG___CCTACACACCGCAGGAGATTGTGGGCGGCATCCCAGACTCGGAGCAGCTCCTGCCGGAGCTTCTGAAGAAGGCCGGCTACGTCAGCAAGATTGTCGGCAAGTG___ATATTATGAAGAATTTCCTATTAATCTGAAG	out-of-frame	PAPAAARPRSSSAGPEGPQLDVPREFLPRTLTGYVPEDIWRKAEEAVNEVKRQAMSELQKAVSDAERKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSE|rgrhcsqdgypsamastpptpmpetpthrrrlwaasqtrssscrsf*	.
TALL080	Y_RNA(10458),AIM1(46468)	AIM1	./.	+/.	6:106465387	6:106519751	intergenic	CDS	deletion/read-through	downstream	upstream	2	3	2	5	42	low	.	.	.	.	.	.	.
TALL080	MLLT11	GABPB2	+/+	+/+	1:151060553	1:151088190	splice-site	splice-site	deletion/read-through	downstream	upstream	2	4	0	188	15	low	.	.	duplicates(1),mismatches(1)	AAAGGAGTGAGAAGACAAAGCCGTCAAAGCCCCAACAGCTTTGTATTTCTCCAGCCCGGCGCAGACCCCGGAGCTCCCGAGGCACTCCCTCCATCTTTGGAACACGCCAGTAATTGATTGATAACAG|ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAACGTTGATGGCAAATGGCGCCCCATTCACCACAGACTGG___CAGAAGTACTCCTTCGAGCAGGTGTTAGCAGGGATGCCCGGACTAAAG...GGGCCACAGAGCGCCACCATCGAGATGTCGTAGAGTTACTTATCAAATATGGAGCTGATGTCCATGCTTTCAGCAAATTTGATAAATCAGCCTTTGACATAGCTCTGGAGAAAAACAATGCTGAGATTTTGGTCATCCTCCAG___GAAGCAATGCAGAATCAGGTGAATGTTAATCCAGAGAGAGCCAACCCTGTGACT	.	.	.
TALL080	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	0	4	2	7	8	low	.	.	duplicates(1),low_entropy(1)	CCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGCTCCCGGTCCCCAAGATGTGACTCCTGGAGCTCCTAAGGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGT	out-of-frame	LYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL080	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23232293	splice-site	splice-site	deletion/read-through	upstream	downstream	2	3	1	98	13	low	.	.	low_entropy(1)	ATCTCGGCTTACTACAACCTCCGCCTCCCAG___GTTCTGACAACAAAGGAGATTGTGACATATTGCTGGGCCTAACACTAAGGTGATGTTAGTTATTTGCTTTGGCTGTGCCCTTGGAAGGCATTGAGACATACTGCTGTGCCCAGCACCAAGATGAT___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTGTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGAACGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGG___GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGCAAAGAGCCCTGGAATATGGAGAGACATGAGATGGTGGCCAAACCCCCAG___GTATGTGTTGTTATTTTGCgCAAGACCTTCGGC	.	.	.
TALL080	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23224018	splice-site	splice-site	deletion/read-through	upstream	downstream	2	0	0	98	19	low	.	.	duplicates(1)	AGTAAGGCAATGCAAGAACCTGAAGCAAAATGCACCTGAGGCTTACAGTGGG___GTTCTGACAACAAAGGAGATTGTGACATATTGCTGGGCCTAACACTAAGGTGATGTTAGTTATTTGCTTTGGCTGTGCCCTTGGAAGGCATTGAGACATACTGCTGTGCCCAGCACCAAGATGAT___GTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|GTATGTGTTGTTATTTTGCgCAAGACCTTCGGCCAGAGCAGAG	.	.	.
TALL080	RP11-15H20.6	ZNF724P	-/-	-/-	19:23260864	19:23231361	splice-site	splice-site	deletion/read-through	upstream	downstream	0	1	1	98	13	low	.	.	.	CGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCTAG|GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGCAAAGAGCCCTGGAATATGGAGAGACATGAGATGGTGGCCAAACCCCCAG___GTATGTGTTGTTATTTTGCgCAAGACCTTCGGCCAGAGCAGAGCATAAAAGCTTCTTTGCAAAGAATAATACTGAGAAAATATGAA	.	.	.
TALL080	RP11-15H20.6	ZNF724P	-/-	-/-	19:23274076	19:23224018	splice-site	splice-site	deletion/read-through	upstream	downstream	1	0	0	102	19	low	.	.	duplicates(1)	ATCGGTCTCTGCTGTTTTACGTCCTCCACCTCGGGAGCCCCCGGTGACTGTCACAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGATGCCAGGACATCCTGGAAGCTGGGAAAAG|GTATGTGTTGTTATTTTGCgCAAGACCTTCGGCCAGAGCAGAGCATAAAAGCTTCTTTGCAAAGAATAATACTGAGA	.	.	.
TALL080	PARL	MAP6D1	-/-	-/-	3:183840570	3:183818111	splice-site	splice-site	deletion/read-through	upstream	downstream	3	3	0	399	15	low	.	.	mismatches(1)	GTGATGGCCAGCGGACTGTGACAG___GTATTATAGCTGCAAATGTCCTTGTATTCTGTTTATGGAGAGTACCTTCTCTGCAGCGGACAATGATCAGATATTTCACATCGAATCCAGCCTCAA___GTGTTATTTCCAATTTTGTCAGTTACGTGGGTAAAGTTGCCACAGGAAGATATGGACCATCACTTGGTGCA|ACAGGAATTCCAGGCTTGGACTGGAGTGAAGCCCTCAAGATCCACAAAGACAAAACCAGCCCGAGTCATCACAACCCACACTTCGGGATGGGACAGCAGCCCTGGGGCCGGCTTCCAG___GTCCCAGAGGTGAGGAAGAAGTTCACTCCTAACCCCTCCGCCATCTTTCAGGCCTCAGCTCCCCGG...GGCTCCcGCGTTCGTTAACTGCCATCTGGCCGTCTCTCAGTTTTGAAATCTCTGAGGAGCCTGAGGATCAAGTCAGTTGGGAACCGAATTGGTCCATGGAAGCTGAGGAATGTGGACACATCCGG	out-of-frame	DGQRTVTGIIAANVLVFCLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGA|tgipgldwsealkihkdktspshhnphfgmgqqpwgrlpgprgeeevhs*	.
TALL080	PARL	MAP6D1	-/-	-/-	3:183833492	3:183818111	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	353	15	low	.	.	duplicates(1),read_through(7)	CAAATGTCCTTGTATTCTGTTTATGGAGAGTACCTTCTCTGCAGCGGACAATGATCAGATATTTCACATCGAATCCAGCCTCAA___GTGTTATTTCCAATTTTGTCAGTTACGTGGGTAAAGTTGCC...ATGGACCATCACTTGGTGCA___GCCCTGAAAGCCATTATCGCCATGGATACAGCAGGAATGATCCTGGGATGGAAATTTTTTGATCATGCGGCACATCTTGGGGGAGCTCTTTTTGGAAT|ACAGGAATTCCAGGCTTGGACTGGAGTGAAGCCCTCAAGATCCACAAAGACAAAACCAGCCCGAGTCATCACAACCCACACTTCGGGATGGGACAGCAGCCCTGGGGCCGGCTTCCAG___GTCCCAGAGGTGAGGAAGAAGTTCACTCCTAACCCCTCCGCCATCTTTCAGGCCTCAGCTCCCCGGATTCTCAACGTGTGACTGCCTGCACCGTGACACCATGGCTGCCGAC	in-frame	GPSLGAALKAIIAMDTAGMILGWKFFDHAAHLGGALFGi|QEFQAWTGVKPSRSTKTKPARVITTHTSGWDSSPGAGFQVPEVRKKFTPNPSAIFQASAPRILNV*	.
TALL080	EEF1A1P6	FAM126A	-/.	-/.	7:22511739	7:22917315	exon	intron	deletion	downstream	upstream	0	0	6	520	0	low	.	.	duplicates(1),low_entropy(1),mismatches(15)	.	.	.	.
TALL080	URM1	CERCAM	+/+	+/+	9:128389309	9:128422868	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	1	311	6	low	.	.	.	TGCGGAGCTCCTGTTTGACGGTATTAAGAAACATCGAGTCACTTTGCCTGGACAGGAGGAACCCT___GGGACATCCGGAACCTGCTCATCTGGATCAAGAAGAATTTGCTAAAAGAGCGGCCAGAGTTGTTCATCCAGGGAGACAGCGT___GCGGCCAGGAATTCTGGTGCTGATTAACGATGCCGACTGGGAGCTACTG|GTGTGCCACGGACCACAATGTGGACAACACCACAGAGATGCTGCAGGAGTGGCTGGCGGCTGTGGGCGATGACTATGCTGCTGTGGTCTGGAGGCCTGAGGGCGAGCCCAG...AGGAAAAGGGACAGCCCAGAGCCACAGCCTCCAAGCCAGGGCTCTGTCCACTG[tgtccactg]CCCTGCAGAGAGGGAGGGGCATGTACCCCATGGGAACATCTCACCTCTATCCCCTCAGGTTC...ACTCCAACTTCTGGTGTGGGATCACCCCCCAG___GGCTACTACCGCCGCACAGCCGAGTACTTCCCCACCAAGAACCGCCAGCGCCGGGGCTGCTTCCGTGTCCCCATGGTCCACTCCACCTTCC	out-of-frame	AELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL|vchgpqcgqhhrdaagvaggcgr*	.
TALL080	URM1	CERCAM	+/+	+/+	9:128387897	9:128422868	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	274	6	low	.	.	mismatches(1)	GGACATCCGGAACCTGCTCATCTGGATCAAGAAGAATTTGCTAAAAGAGCGGCCAGAGTTGTTCATCCAGGGAGACAGCGT|GTGTGCCACGGACCACAATGTGGACAACACCACAGAGATGCTGC...ATGAAGAGGGTCCCAAGCACTGGACCAAAGAAAGGCACCAGTTTCTGATGGAGCTGAAGCAGGAAGCCCTCACCTTTGCCAGGAACTGGGGGGCCGACTATATCCTGcccAGGcAG	in-frame	DIRNLLIWIKKNLLKERPELFIQGDSv|CATDHNVDNTTEML	.
TALL080	IFT57	HHLA2	-/+	+/+	3:108220539	3:108351788	intron	splice-site	deletion/read-through/3'-3'	downstream	upstream	1	2	2	18	16	low	.	.	.	CCGGCTTGATAGCTGTGGATCTTGGGACTTCTCAGCCTCCAGAACCAT___GATAAATGTAAATGTTCTGGAAGATAACAGAAAGCTGGGAAGAAAAAAGGCCATGAAGTCCTTCCAG|CATGACTAATATGTTCTGCACAAGACATGAAGGCACAGACAGCACTGTCTTTCTTCCTCATTCTCATAACATCTCTGAGTGGATCTCAAG___GCATATTCCCTTTGGCTTTCTTCATTTATGTTCCTATGAATGAACAAATCGTCATTGGAAGACTTGATGAAGATATAATTCTCCCTTCTTCATTTGAGAGGGGATCCGAAGTCGTAATACACTGGAAGTATCAAGATAGCTATAAGGTTCAtAGTTACTACAAAGGCAGTGACCATTTGGAAAGCCAAGATCCC	.	.	.
TALL080	IRF1	C5orf56	-/-	+/-	5:132486557	5:132449666	splice-site	CDS	deletion/read-through/5'-5'	upstream	downstream	3	1	1	513	44	low	.	.	mismatches(2)	GGATGCTTCCACCTCTCACCAAGAACCAGAGAAAAG___AAAGAAAGTCGAAGTCCAGCCGAGATGCTAAGAGCAAGGCCAAGAGGAAG___TCATGTGGGGATTCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCTCCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGGCTACATGCAGGACTTGGAGGTGGAGCAGGCCCTGACTCCAG|GCTACAAACTCTGGCACCTG?AAAAAACAAGGAAAGTAAATGATTGAAGCAGGGCACTGAAGGTGGGCCTTTGAACAACGCAAGCCTGGATGGAAGTTGAAAGATGAGAGCCCATCTGTG___GAATTCTTTGGACCTTCTGGATATAAGCCCCAGTCGTCTGTCGGATATGTTACAGAGAATATCCTCTCCTCTTCCAGTCTCTG	out-of-frame	MLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALTP|gyklwhl?ktrkvnd*	.
TALL080	IL10RB	IL10RB(10951),AP000295.10(1306)	+/+	./+	21:33288261	21:33308185	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	1	261	13	low	.	.	duplicates(1),mismatches(1)	CG___AAACGGTCCCCTCCTGGATGGTGGCCGTCATCCTCATGGCCTCGGTCTTCATGGTCTGCCTGGCACTCCTCGGCTGCTTCGCCTTGCTGTGGTGCGTTTACAAGAAGACAAAGTACGCCTTCTCCCCTAGGAATTCTCTTCCACAGCACCTGAAAGAG|CTCTCTGGCATCAATTTTTCCACTTCTCAGAAACACTTTGGCCCACAAATTCCCAAAGGAACCTTGTTCTTCATTCTGGAAAACACGATGCCAACATATCAGAATAAAGGACAGATAGGAGCTTTTGCTTCAAAGTGAATCACTTCATGGATGTTAAAGTGTCCTGAAAGATTCTAAACTTCACAACTTTTGATAGTAAC?GTACTATATTTGCAACATATTTGCATATATTAATTGTTATATCTGAAAAGCATGAGATTGCTGTTTTATAAAATTAAAT	out-of-frame	ETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE|lsginfstsqkhfgpqipkgtlffilentmptyqnkgqigafask*	.
TALL080	POLR2J2	RASA4	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	1	3	1	388	128	low	.	.	.	AAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATG...AGCCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG___GTTTCAGCGGGTGGGCCCACCTGACGGAGGTCGACCCCGATGAGGAGGTGCAGGGCGAGATCCACCTGCGG	in-frame	KSRACFPFAFCrdcqfpeaspatlpvqpael|TGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFHAVAFYVMDED	.
TALL080	POLR2J2	RASA4	-/-	-/-	7:102638714	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	220	128	low	.	.	read_through(1)	CCAGCCACGCTTCCTGTACAGCCTGCAGAACT...GGCTGTCCCCGGCCCCCAGAGCCCGGGCACCGTGGTCATCATCGCCATCCTGTCTATCCTCCTGGCCGTCCTCCTCACGGTCCTCCTGGCTGTGCTCATATACACCTG|CACTGGCAGCAGCGAC	out-of-frame	AVPGPQSPGTVVIIAILSILLAVLLTVLLAVLIYTc|tgss	.
TALL080	POLR2J2	RP11-514P8.6	-/-	-/-	7:102666077	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	1	3	1	388	128	low	.	.	.	AAATC___ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT|CACTGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAGCCCATCATCAG___GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATG...AGCCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG___GTTTCAGCGGGTGGGCCCACCTGACGGAGGTCGACCCCGATGAGGAGGTGCAGGGCGAGATCCACCTGCGG	out-of-frame	KSRACFPFAFCrdcqfpeaspatlpvqpael|tgssdpycivkvdnepiirtatvwktlcpfwgeeyqvhlpptfhavafyvmded	.
TALL080	POLR2J2	RP11-514P8.6	-/-	-/-	7:102638714	7:102611142	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	220	128	low	.	.	read_through(1)	CCAGCCACGCTTCCTGTACAGCCTGCAGAACT...GGCTGTCCCCGGCCCCCAGAGCCCGGGCACCGTGGTCATCATCGCCATCCTGTCTATCCTCCTGGCCGTCCTCCTCACGGTCCTCCTGGCTGTGCTCATATACACCTG|CACTGGCAGCAGCGAC	out-of-frame	AVPGPQSPGTVVIIAILSILLAVLLTVLLAVLIYTc|tgss	.
TALL080	CYTIP	FAM133DP(23303),CYTIP(10902)	-/-	./-	2:157427418	2:157403717	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	5	4	47	low	.	.	.	CCAGCTCACTGTGCTGGCCTGCAAGCTG___GTGATGTCCTTGCAAATATCAATGGTGTGAGCACAGAAGGTTTTACCTACAAACAAGTCGTTGACCTGATCAGATCGTCCGGAAACCTGCTAAC___GAT...|...AAAAAGCCACAAGTCGGGGAGGTTACAAGACAGCCGAATAGGAACAGCTCCAGTCTACAGCTTCCAGTGTGAGCGATGCAGAAGATGGGTGATTTCTGCATTTCCAACTGAG___GATGAAGAATATCACAGTCAAAATGGTCCAAAAGATGTTTGACATTTTTGCCCTAGAAACAAAAAAACAAAAAATGTTGTATATGCGTCACTAAGAATGAAACAGACAAAAAT	.	.	.
TALL080	D2HGDH	GAL3ST2	+/+	+/+	2:241744877	2:241799065	splice-site	splice-site	deletion/read-through	downstream	upstream	2	2	1	266	23	low	.	.	mismappers(1)	GCCAAGGGCAGCTGCCACATCGGGGGAAACGTGGCAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCACTGCATGGGACTGTCCTGGGCCTGGAAGTG___GTGCTGGCCGACGGCACTGTCCTGGACTGCCTGACCTCCCTGAGGAAGGACAACACGGGCT...CCTGAAGCAGCTGTTCATCGGGTCGGAGGGCACTTTGGGGATCATCACCACGGTGTCCATCTTGTGTCCACCCAAGCCCAGGGCTGTGAACGTGGCTTTCCTCG|ATACTTCCGGGTCATCCTCCTCCTCCTCCTGGCCCTGACTCTGCTCCTGCTGGCCGGATTCCTGCACTCGGACTTAGAGCTGGACACACC___CAGGTGACGGGAGGAGCTGTGGATATTCATGAAGGGGG...___CCTGTTTGGGGGCCAGGCTGAGGGGCCGCCGGTCACCAACATCATGTTCCTGAAGACGCACAAGACGGCCAGCAGCACGGTGCTCAACATCCTCTACCGCTTCG	out-of-frame	LKQLFIGSEGTLGIITTVSILCPPKPRAVNVAFL|dtsgsssssswp*	.
TALL080	D2HGDH	GAL3ST2	+/+	+/+	2:241756014	2:241799065	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	3	216	23	low	.	.	mismappers(1)	CAAGGTGCTGCTGAGGCCACGGACGTCGGAGGAGGTGTCCCACATCCTCAG___ATGCTGTGGGCCCTGAGGGAAAGGATCACAGAGGCGCTGAGCCGGGATGGCTACGTGTACAAGTACGACCTCTC...CCTGCGCGCCCGCCTCGGCCCGCACGCCAAGCACGTGGTGGGCTATGGCCACCTTG|ATACTTCCGGGTCATCCTCCTCCTCCTCCTGGCCCTGACTCTGCTCCTGCTGGCCGGATTCCTGCACTCGGACTTAGAGCTGGACACACC___CCTGTTTGGGGGCCAGGCTGAGGGGCCGCCGGTCACCAACATCATGTTCCTGAAGACGCACAAGACGGCCAGCAGCACGGTGCTCAACATCCTCTACCGCTTCGCCGAGACCCACAACCTGTCCG	out-of-frame	LRARLGPHAKHVVGYGHL|dtsgsssssswp*	.
TALL080	D2HGDH	GAL3ST2	+/+	+/+	2:241743815	2:241799065	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	241	23	low	.	.	mismappers(1)	TGGCAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCACTGCATGGGACTGTCCTGGGCCTGGAAGTG|ATACTTCCGGGTCATCCTCCTCCTCCTCCTGGCCCTGACTCTGCTCCTGCTGGCCGGATTCCTGCACTCGGACTTAGAGCTGGACACACC___CCTGTTTGGGGGCCAGGCTGAGGGGCCGCCGGTCACCAACATCATGTTCCTGAAGACGCACAAGACGGCCAGCAGCACGGTGCTCAACATCCTCTACCGCTTCGCCGAGACCCACAACCTGTCCGTGGCGCTGCCCGCCGGCTCACGCGTCCACCTG	out-of-frame	ATNAGGLRFLRYGSLHGTVLGLEV|ilpghpppppgpdsapagripalglraghtpvwgpg*	.
TALL080	CD44	RP1-68D18.3	+/+	+/+	11:35221732	11:35285337	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	2	1967	9	low	.	.	duplicates(2),low_entropy(2),mismatches(1)	CACCGACAGCACAGACAGAATCCCTGCTACCA___GAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCATACCACTCATGGATCTGAATCAGATG___GACACTCACATGGGAGTCAAGAAGGTGGAGCAAACACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAG___AATGGCTGATCATCTTGGCATCCCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAG|GACTGCTGGgCATGTTCAAAGCAATGTATGGAAAGAGTCCGCCATCTCAGAGGAACCAAAGAGTGGAGTGATTATCATCATGGAGGATGAAAGTGTATTCCAGTGTCTACCTCATTCATTTCCTAAAGTGAATCACCCAGGCCTTGGCTGTTCTAATATCTGGAATTCTCTTTCTACTACAAGTACATCTGTCACACAGAATGTTA...CAGGCCAGGCATAAGTAATAGGGAGCAGGGGAGACTGTGGGAAACTGAAGGGCAGCTGTCTCATAAGAGGATGAAATTCTAATCTTTTACAATATATTTCAAGGCAAACAAAGCAACACTCTGGG	out-of-frame	TDSTDRIPATRDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRr|taghvqsnvwkesaiseepksgviiimedesvfqclphsfpkvnhpglgcsniwnslsttstsvtqnv	.
TALL080	ADAT1	RP11-77K12.8	-/-	-/-	16:75599312	16:75601151	3'UTR	intron	duplication	upstream	downstream	0	2	3	31	16	low	.	.	.	AAAGAATGAAGGCAACAAAGGAAACAGCCAAGAGAATCAAAGATCTAGTAACACTGTTTAGATGTCTCAATTATGTGAGACAGATTCCTGTTGTTATTTTGATTAAGCCTGTTTGTGTTGGTTTTCTGACTTACAATTGAAAGAGTTCTGTCCAAAAAGCCAAAAGGTGGCCAGGCTTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAAGCCCAGGCAGGCAGATCACTTGAGG|CCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCTTCGGCCTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCACCATGCCTGGCCTAGAAAACTTTTAAACCAAAAAAGTAGACAGTTGTTTTTATTTTATCTGATTCCACTAGGACCATAGAAACCTAGAATTCTGTTCATTCTTAACTGTTTTAATTCATGTTGCTTTCTCGTGAATTCCCTACAAAGGAGACAGAGTTGCTC	.	.	.
TALL080	NTRK1	PEAR1	+/+	+/+	1:156880157	1:156904748	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	4	443	7	low	.	.	duplicates(1)	GTGATTTTGGCATGAGCAGGGATATCTACAGCACCGACTATTACCGT___GTGGGAGGCCGCACCATGCTGCCCATTCGCTGGATGCCGCCCGAGAGCATCCTGTACCGTAAGTTCACCACCGAGAGCGACGTGTGGAGCTTCGGCGTGGTGCTCTGGGAGATCTTCACCTACGGCAAGCAGCCCTGGTACCAGCTCTCCAACACGGAG|CTTCACTACCACCACCAAGGAGTCCCACTCCCG...CCCCTCAGAGCCCTGCGAGCGGCCCTGGGAGGGCCCCCATACTTGCCCCCAGCCCACGTGAGTGCTCCTCATCCTCCATGGGTGGATGGGCTACCTGAGTCGCTGCCTCAGCCTGGCCCCTGGC	out-of-frame	DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE|lhyhhqgvpl	.
TALL080	NTRK1	PEAR1	+/+	+/+	1:156861146	1:156905324	splice-site	splice-site	deletion/read-through	downstream	upstream	1	1	1	237	4	low	.	.	.	CCCGCCTGAGCGAGGCGGGCGCCGCCGCGATGCTGCGAGGCGGACGGCGCGGGCAGCTTGGCTGGCACAGCTGGGCTGCGGGGCCGGGCAGCCTGCTGGCTTGGCTGATACTGGCATCTGCGGGCGCCGC...CCACCACCTGCCCGGCGCAGAGAACCTGACTGAGCT|GGTTGTATACCGGACCGTGTACCGTCAGGTGGTGAAGACGGACCACCGCCAGCGCCTGCAGTGCTGCCATGGCTTCTATGAGAGCAGGGGGTTCTGTGTCC___CGCTCTGTGCCCAGGAGTGTGTCCATGGCCGTTGTGTGGCACCCAATCAGTGCCAATGTGTGCCAGGCTGGCGGGGCG	in-frame	HHLPGAENLTEl|VVYRTVYRQVVKTDHRQRLQCCHGFYESRGFCVPLCAQECVHGRCVAPNQCQCVPGWRG	.
TALL080	NTRK1	PEAR1	+/+	+/+	1:156861146	1:156904748	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	1	237	7	low	.	.	.	CTGAGCGAGGCGGGCGCCGCCGCGATGCTGCGAGGCGGACGGCGCGGGCAGCTTGGCTGGCACAGCTGGGCTGCGGGGCCGGGCAGCCTGCTGGCTTGGCTGATACTGGCATCTGCGGGCGCCGC...CCACCACCTGCCCGGCGCAGAGAACCTGACTGAGCT|CTTCACTACCACCACCAAGGAGTCCCACTCCCGCCCCTTCAGCCTGCTCCCCTCAGAGCCCTGCGAGCGGCCCTGGGAGGGCCCCCATACTTGCCCCCAGCCCACGTGAGTGCTCCTCATCCTCCATGGGTGGATGGGCTACCTGAGTCGCTGCCTCAGCCTGGCCCCTGGCCCTCTGTACCTGTTCACTTCTC	in-frame	HHLPGAENLTEl|FTTTTKESHSRPFSLLPSEPCERPWEGPHTCPQPt*	.
TALL080	NTRK1	PEAR1	+/+	+/+	1:156864428	1:156902188	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	1	154	2	low	.	.	.	CCACCACCTGCCCGGCGCAGAGAACCTGACTGAGCT___CTACATCGAGAACCAGCAGCATCTGCAGCATCTGGAGCTCCGTGATCTGAGGGGCCTGGGGGAGCTGAGAAACCT|GCTTCATATCCTGAACGCTGGGATCCCCCAGGACATTCCCTGGCCCCCAGGCCCCAGGTCCCAG	out-of-frame	HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNl|lhilnagipqdipwppgprs	.
TALL080	NTRK1	PEAR1	+/+	+/+	1:156842193	1:156906276	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	11	11	low	.	.	duplicates(1)	GGATGACTAAGTCATTGACAGAAGAGAAAACCATGAAGTCATTCAGCAAA___AAGAAAGGTGAGCAGCCAACAGGCCAGCAGCGGCGGAAACACCAGATCACATATCTTATTCATCAG___GCC...GTACCCCCGATCTTGACGGTGAAGTCCTGGGACACCATGCAGTTGCGGGCTGCTAGATCTCGGTGCACAAACTTGTTGGCAGCAAG|CGCTCTGTGCCCAGGAGTGTGTCCATGGCCGTTGTGTGG	out-of-frame	VPPILTVKSWDTMQLRAARSRCTNLLAAs|alcpgvcpwplc	.
TALL080	NTRK1	PEAR1	+/+	+/+	1:156861146	1:156906637	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	237	6	low	.	.	.	CGATGCCTGCTGCCCCCACGGCTCCTCGGGACTGCGATGCACCCGGGATGGGGCCCTGGATAGCCTCCACCACCTGCCCGGCGCAGAGAACCTGACTGAGCT|AGTGTGCCCCAGGAATGTGGGG...GCTTCTTCTGCCCCAGCACCCATcCTTGCCAAAATGGAGGTGTCTTCCAAACCCCACAGGGCTCCTGCAGCTGCCCCCCTGGCTGGATG___GGCACCATCTGCTCCCTGCCCTGCCCAGAGGGCTTT	out-of-frame	DACCPHGSSGLRCTRDGALDSLHHLPGAENLTEl|vcprnv	.
TALL080	NTRK1	PEAR1	+/+	+/+	1:156861146	1:156906276	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	237	11	low	.	.	.	CTGCAGCTGGGAGCGCACAGACGGCTGCCCCGCCTGAGCGAGGCGGGCGCCGCCGCGATGCTGCGAGGCGGACGGCGCGGGCAGCTTGGCTGGCACAGCTGGGCTGCGGGGCCGGGCAGCCTGCT...GCTGCCCCCACGGCTCCTCGGGACTGCGATGCACCCGGGATGGGGCCCTGGATAGCCTCCACCACCTGCCCGGCGCAGAGAACCTGACTGAGCT|CGCTCTGTGCCCAGGAGTGTGTCCATGGC	out-of-frame	CPHGSSGLRCTRDGALDSLHHLPGAENLTEl|alcpgvcpw	.
TALL080	NTRK1	PEAR1	+/+	+/+	1:156868647	1:156906276	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	0	70	11	low	.	.	.	CGGGGAACCCTCTGCACTGTTCTTGTGCCCTGCGCTGGCTACAGCGCTGGGAGGAGGAGGGACTGGGCGGAGTGCCTGAACAGAAGCTGCAGTGTCATGGGCAAGGGCCCCTGGCCCACATGCC...GAGCAGGCCGGCTGGATCCTCACAGAGCTGGAGCAGTCAGCCACGGTGATG|CGCTCTGTGCCCAGGAGTGTGTCCATGGCCGTTGTGTGGCACCCAATCAGTGCCAATGTGTGCCAGGCTGGCGG	out-of-frame	EQAGWILTELEQSATVM|rsvprsvsmavvwhpisanvcqag	.
TALL080	NTRK1	PEAR1	+/+	+/+	1:156880157	1:156906276	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	0	443	11	low	.	.	.	GAGATCTTCACCTACGGCAAGCAGCCCTGGTACCAGCTCTCCAACACGGAG|CGCTCTGTGCCCAGGAGTGcGTCCATGGCCGTTGTGTGGCACCCAcTCAGTGCCAAaGTGTG...GCCTGCCAGTTCCGCTGCCAGTGCCATGGGGCACCCTGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAGAACTGGGCCCAG___CTGTGACGTGTCCTGTTCCCAGGGCACTTCTGGC	out-of-frame	EIFTYGKQPWYQLSNTE|rsvprsasmavvwhplsakv	.
TALL080	PPP6R2	SBF1	+/+	-/-	22:50432329	22:50468461	splice-site	splice-site	inversion	downstream	downstream	3	1	1	204	299	low	.	.	.	GCTCTGCCGGCTCAACACGATGGACTTACTGCTG___GACTTGTTCTTTAAGTACACCTGGAATAACTTTTTGCACTTCCAAGTGGAACTATGCATAGCCGCTATTCTCTCCCACGCTGCCCGTGAGGAGAGGACAGAAGCCAGCGGATCCGAGAGCAGGGTGGAGCCTCCGCATGAGAACGGGAACCGGAGCCTGGAGACTCCCCAGCCGGCCGCCAGCCTCCCTGACAACACAATGGTGACCCAC___...CAcCTGTTCCAGAAGTGCTGCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|GGAGTGGGGAAGGCCAGGGCCAGATTCTGCAGCGCTTCCCAGAGAAGGACTGGGAGGACAACCCAaTCCCCCAGGGCATCGAGC...CCTGCTTGACCTTCTGGGAGCCAGCGGAGCCTTCACAG___GAAACGACGCGCGTGGAGGATGCCACAGAGAGGGAGGAAGAGGGGGATGAGGGAGGCCAGACCCACCTGTCTCCCACAGCACCTGCC	out-of-frame	hLFQKCCLVQRILEAWEANDHTq|ewgrpgpdsaalpreglggqpnppghr	.
TALL080	MGMT	RP11-109A6.3(44288),EBF3(21560)	+/+	./+	10:129759341	10:129813723	splice-site	intergenic	deletion/read-through	downstream	upstream	1	3	0	81	7	low	.	.	.	CCTATTTCCACCAGCCCGAGGCTATCGAAGAGTTCCCCGTGCCGGCTCTTCACCATCCCGTTTTCCAGCAAG___AGTCGTTCACCAGACAGGTGTTATGGAAGCTGCTGAAGGTTGTGAAATTCGGAGAAGTGATTTCTTACCAGCAATTAGCAGCCCTGGCAGGCAACCCCAAAGCCGCGCGAGCAGTGGGAGGAGCAATGAGAGGCAATCCT|GTCTTGGAAGAAACCATCACACCGAGGTCATTTCTGAGCACAGCGTGGAAGCTCCTATGTTTGCAG...TTgCAGATTGATTCCTTGGAGTGGAATTAGTAAAAAGGATATGAATATTTTTAGTCTCTTGATATGTcAGACTGATTTCCAGAAGGCTTGTACCAATTTACTCTTCTACCGACAACTGTAAGAATACCCTTCCTCCA	out-of-frame	YFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNP|vleetitprsflstawkllcl	.
TALL080	SMG1P2	RP11-231C14.4	-/-	-/-	16:29527608	16:29495607	exon	splice-site	deletion/read-through	upstream	downstream	1	3	0	26	188	low	.	.	.	GTCTATAACTGA___AAATGTGGTAAAGTACTTGAAGCAAACATCCCGCATCACTATTGGACCTCTGAGACTTTCTACTTTAACAGTTTCACAGTCTTTGCCAGTTCTAAGTACCTTGTAGCTGTATT...TCCACTCTTCGGCGAAGCTTTACGTTCATGTAAACAGCATGACGTGAGGCCGTGGATGCAGGCATTAAG|GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACATGTCATTATTGCGTTTCCGACAAGTTATAAAGTTGTCATTACCCTCTGGATAGTTTACCTTTGG___GTGTCTCTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCCGTAGACAGGA	.	.	.
TALL080	IKBKG	CTAG1A	+/+	+/+	X:154564020	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	2	180	10	low	.	.	low_entropy(4)	AGGCAGGCCCGGGAGAAGCTGGCCGAGAAGAAGGAGCTCCTGCAGGAGCAGCTGGAGCAGCTGCAGAGGGAGTACAGCAAACTGAAGGCCAGCTGTCAGGAGTCGGCCAG___GATCGAGGACATGAGGAAGCGGCATGTCGAGGTCTCCCAGGCCCCCTTGCCCCCCGCCCCTG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTCATTGTGGGGGCCTGATTGTTTGTCGCTGGAGGAGGACGGCTTACATGTTTGTTTCTGTAGAAAATAAA	out-of-frame	RQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRHVEVSQAPLPPAP|ad*	.
TALL080	IKBKG	CTAG1A	+/+	+/+	X:154556376	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	1	0	2	229	10	low	.	.	low_entropy(1)	CTCCCACCCTTCTCACGTCTGACGGACTCTGCTGACAG___CCCTTGCCCTGTTGGATGAATAGGCACCTCTGGAAGAGCCAACTGTGTGAGATGGTGCAGCCCAGTGGTGGCCCGGCAGCAGATC...AGGAGTTCCTCATGTGCAAGTTCCAGGAGGCCAGGAAACTGGTGGAGAGACTCGGCCTGGAGAAGCTCGATCTGAAGAGGCAGAAGGAGCAGGCTCTGCGGGAGGTGGAGCACCTGAAGAGATGCCAGCAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGCCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTCATTGcGG	out-of-frame	EFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQ|ptdccrppptaalhqllspaafpvdvdhavlsarvfgsaslraealspawrpflghassprewsqhewpvhc	.
TALL080	IKBKG	CTAG1A	+/+	+/+	X:154552189	X:154586526	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	292	10	low	.	.	.	CGAAGAGTCTCCTCTGGGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAG|CCGACTGACTGCTGCAGACCACCGCCAACTGCAGCTCTCCATCAGCTCCTGTCTCCAGCAGCTTTCCCTGTTGATGTGGATCACGCAGTGCTTTCTGCCCGTGTTTTTGGCTCAGCCTCCCTCAGGGCAGAGGCGCTAAGCCCAGCCTGGCGCCCCTTCCTAGGTCATGaCTCCTCCCCTAGGGAATGGTCCCAGCACGAGTGGCCAGTTCATTGTGGGGGCCTGATTGTTTGTCGCTGGAGGAGGACGG	out-of-frame	EESPLGKPAMLHLPSEQGAPETLQRCLEENQELR|ad*	.
TALL080	ZNF577	AC006272.1	-/-	-/-	19:51877282	19:51843315	splice-site	exon	deletion/read-through	upstream	downstream	4	0	0	34	10	low	.	.	.	CTACAGCAACCTTGTGTCAGTGG___GGTATCAAGCCGGCAAACCTGATGCCCTCACCAAGTTGGAACAAGGAGAACCACTATGGACACTAGAAGATGAAATCCACAGTCCAGCCCACCCAG___GTTCTG...CGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTTGTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAG___GGTAT?GAGGCACCAAGCCAGATTCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATG	out-of-frame	EDVAVGFTREEWQFLDQSQKVLYKEVMLENYINLVSIGY?GTKPDSLFKLEQGEPPGIAEGAAHSQICP|gfiiiq*	.
TALL080	ARHGEF18	C19orf45	+/+	+/+	19:7470315	19:7500806	splice-site	splice-site	deletion/read-through	downstream	upstream	2	1	1	150	48	low	.	.	duplicates(1)	CACGGAACCGCCGCTCGCTGAGCCCTATCCTGCCCGGCAGACACAGTCCTGCGCCCCCACCAG___ACCCTGGCTTCCCCGCCCCGAGCCCACCGCCAGCTGACAGCCCCTCCGAGGGCTTCTCTCTC...CTCCTGCCCGGGCCCCCAGCTCCCTCGCCACTGCCGGCCACACCACTCAGCGCCAAGGAGGACGCCAGCAAAGAAGACGTCATCTTCTTCTAAAAGGGCCGTGACTCAAG|GTGGCTGGTGTCCCGCGATGGCCACAGGCGCCCTCCTGCCGTGCTCGCGCCCGTGCCCGATGTCCCGGCTGGACTTCCTCAAGGCCTCGCACTTCTCGCTGGGGCCTGACCTG...GCCTACCCGGCTGCCACCCGGGAGCCGCCGAGCCTGCAGCCGCCGCCCGCGCTGCTTTTCCCAATGGACCCGCGCTGGGACCGGGAAGAGCGCGTGTCGGAGGCGCACCGCGCGTTCCCGCCGC	out-of-frame	LLPGPPAPSPLPATPLSAKEDASKEDVIFF*kgrdsr|wlvsrdghrrppavlapvpdvpaglpqglallaga*	.
TALL080	RMND5A	AC093616.4	+/+	+/+	2:86741049	2:87716738	CDS	exon	deletion	downstream	upstream	0	0	4	284	23	low	.	.	duplicates(1)	CTCgGGCTACGGGCAGCTGTGCGAGCGCcGCCTGGAGGAGCTCATCGACTACACCGGCGGtCTCAAGCACcAGATCCTGCAGAGCCACG___GCCAAGATGCTGAATTATCAGGGACACTTTCACTTGTTTTGACACAGTGCTGTAAAAGAATAAAGGATACTGTTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGTGTTTCTCGGG...|...GTCAGGATCTTTCCAAGCAGGCCTGCGAAGGAAACTTACCCAAAGGGAAGTCT___GTGCTCTCATCAGATGTTCCTTCAGGaACAGAAACTGAGGAGGAAGATGACGGCATGAATGACATGAATCAC	.	.	.
TALL080	MTCH2	C1QTNF4(11466),Y_RNA(8773)	-/-	./-	11:47625678	11:47606125	CDS	intergenic	deletion/read-through	upstream	downstream	0	0	4	272	35	low	.	.	duplicates(1)	CCATAATAACCATCTATCGGGAAGAGGGCATTCTAGGATTTTTCGC___GTTTCTACCATGAATGAAATGAAGAGTTATTCTCAAGCTGTCACAGGA___TTTTTTGCGAGTATGTTGACCTATCCCTTTGTGCTTGTCTCCAATCTTATGGCTGTCAACAACT...|...GATGACAGACCTTTGCAGATAAGATCCAGGGACCTTTGCCAATGTGGCTATGAAAGCTGCGGCGAAAAGGACAGGGGCCACAGTCCTGGACAGCTGCAAATACCCTGACAAAAAAGAAGAAAAGG	.	.	.
TALL080	C3orf17	CD200R1	-/-	-/-	3:113008171	3:112975109	splice-site	5'UTR	deletion/read-through	upstream	downstream	1	0	3	541	4	low	.	.	.	TTTGATGTGAGGGCTTTCTGCAACCAGCTGAAACACAAAGCTACTCAG___GAGACCAGTTTTGATTTTAAATGTTCTCAATCCAGACTAAAGACAACCAAGTATTCTTCTCAGAAAGTGATAGGAACTtCTCATGCCAAAAGTTTTGTGCAAAGATTCCGAGAGGCTGAGTCCTTCACACAACTTTCTGAAGAAATCCAGATGGCAGTTGTATGGTGC...CATTTTTCTGGGTAACAAACTTCTTAAAAGCAACCGGCTTAAACATCTGGAAGCTCAAGGTACTAG|GGCTTCATACAGGAAATCTATTGCTGTGTCAAGTTCCAGAGAAAAGCTTCTGTTCGTCCAAGTTACTAACCAGGCTAAACCACATAGACGTGAAGGAAGGGGCTAGAAGGAAGGGAGTGCCCCACTGTTGATGGGGTAAGA	out-of-frame	IFLGNKLLKSNRLKHLEAQGTr|asyrksiavsssrekllfvqvtnqakphrregrg*	.
TALL080	EEF1A1P6	IGF2BP3	-/.	-/.	7:22511773	7:23341018	exon	intron	deletion	downstream	upstream	0	0	4	2058	1	low	.	.	low_entropy(1),mismatches(12)	.	.	.	.
TALL080	SMARCB1	SLC2A11	+/+	+/+	22:23833703	22:23862104	splice-site	splice-site	deletion/read-through	downstream	upstream	2	0	2	533	29	low	.	.	.	CAGCAGATCGAGTCCTACCCCACGGACAGCATaCTGGAGGACCAGTCAGACCAGCGCGTCATCATCAAG___CTGAACATCCATGTGGGAAACATTTCCCTGGTGGACCAGTTTGAGTGGGACATGT...GAGAAGTTTGCCCTGAAGCTGTGCTCGGAGCTGGGGTTGGGCGGGGAGTTTGTCACCACCATCGCATACAGCATCCGGGGACAGCTGAGCTGGCATCAGAAGACCTACGCCTTCAG___CGAGAACCCTCTGCCCACAGTGGAGATTGCCATCCGGAACACGGGCGATGCGGACCAGTGGTGCCCACTGCTGGAGACTCTGACAGACGCTGAGATGGAGAAGAAGATCCGCGACCAGGACAGGAACACGAG|ATTCAGGGCAGGATCCTGCTCCTGACCATCTGCGCTGCCGGCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGGGTGGAGACTGTCC	out-of-frame	EKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTr|fragscs*	.
TALL080	C21orf33	AP001055.6(7774),AP001056.1(7639)	+/+	./+	21:44137296	21:44167850	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	22	13	low	.	.	duplicates(1)	CTGCATTCACGTCCCTGTCCCCCGGCGGTCGGACGCCTTCCCAGCGCGCAGCCCTTCACCTCTCCGTGCCtCGCCCCGCGGCCAGGGTCGCGCTG___GTGCTGTCTGGATGCGGAGTCTACGATGG...CCTGGCCAACCTCAGTGCAGCCAACCATGATGCTGCCATCTTTCCAGGAGGCTTTGGAGCGGCTAAAAACCT|AGTCTAAAACAATGACTGGCATGAAGTATACAAACTATACATCGCCTAGTAAGTGGATAAAACGATTAATTAATTTGCCCAACATTCAAAACGTGATGGGG...ATTGCAACGCTCAAGCTCCTTGTGCTGCTCCACGCCGCCTTTCGGTACACGAGAAGCTGAGGATCCACGCCGCCTTTCCGTACATGAGAAACTGTAGGATCCACGCCACCTTTCAGTAGAGAAG	out-of-frame	LANLSAANHDAAIFPGGFGAAKNl|v*	.
TALL080	GFOD2	ENKD1	-/-	-/-	16:67692089	16:67663556	intron	splice-site	deletion/read-through	upstream	downstream	0	1	2	1	22	low	.	.	.	GCCCACTTCTGATCCCCAGATTGTCTCCAACTCTGCACCTCAGACATGATGTG|CTTGTTGGAGCGCAGGGACCTGTGGCGGCGGGAGGCCGAGGCCCGCAAGCAGAGCCAGCCGGACCCTGCCATGCCCCCAGGCCACACGCGCATGCCTGAGAACCAGCGGCTGGAAACACTGACCAAGCTG	.	.	.
TALL080	GFOD2	ENKD1	-/-	-/-	16:67685457	16:67666265	splice-site	splice-site	deletion/read-through	upstream	downstream	0	0	0	55	18	low	.	.	read_through(3)	CGGACCCATGGTTTCCAGTGCAGCGCGGAGTGGGCGATGCCAGCGTGCCAG___GAGCCATGTCTGACCAGGACGTTTGGAAGATCATATCCATGCCAGAGGCTCTTGTGAGGAGATGAGTTGGTAA...GCCTTCTACACCAGCCGGACTGATGACATCTTGCTGCATCAAGATGTGGATCTGGTGTGCATCAGCATCCCCCCTCCACTCACCCGGCAGATATCCGTGAAGGCTCTAG|CTCAAGGGCGCCTCGAGGGAAACGCGCTGAAGCTGGACTTGCTGACTTCCGACCGGGCCCTGGACACCACCGCTCCCCG...GGCCCCTGCATCGGTCCCGGTGCCGGAGAGATCCTGGAGCGCGGCCAGCGCGGCGTCGGGGACGTGCTGTTGCAACTCGAGGGGATCTCCCTAGGTCCTGGGGCCTCTCTCAAGA___GAGCCTGG	in-frame	AFYTSRTDDILLHQDVDLVCISIPPPLTRQISVKAL|aQGRLEGNALKLDLLTSDRALDTTAP	.
TALL080	N4BP3	RMND5B	+/+	+/+	5:178113771	5:178142583	splice-site	splice-site	deletion/read-through	downstream	upstream	0	3	0	30	35	low	.	.	.	GCGCGGGGGAGCTGCGACGCGCAAGGGCTGCGGAGCCGCGGGCCGGCGAGCGCGTCGCCACCATG|CCCTCCAGGGGACCCCTCTCTCAGCCACCCTCTCTCTGGTGATGTCACAGTGCTGCCGGAAGATCAAAGATACGGTGCAGAAACTGGCTTCGGACCATAAGGACATTCACAGCAGTGTATCCCGAGTGGGCAAAGCCATTGACAGGGTGAGCACGTGGCCGGCTCCAGGCGTGGGGTGGGAGCACCCTGAAGCTGGGATGTAC	.	.	.
TALL080	N4BP3	RMND5B	+/+	+/+	5:178113771	5:178138108	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	0	30	21	low	.	.	.	GGAGCTGCGACGCGCAAGGGCTGCGGAGCCGCGGGCCGGCGAGCGCGTCGCCACCATG|GCTGAGGCCACCATGGAGCAGTGTGCGTGCGTGGAGAGAGAGCTGGACAAGGTCCTGCAGAAGTTCCTGACCTACGGGCAGCACTGTGAGCGGAGCCTGGAG...GCAAGTGCCCTGCGACAGCCTCCCTGAGGACATGGGAGACCCGAAGCTACTGAGTGACAGGGTTCCGGAAGGACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGG___C	.	.	.
TALL080	ZBTB20	MIR568(8341),ZBTB20(13184)	-/-	./-	3:114350274	3:114324910	splice-site	intergenic	deletion/read-through	upstream	downstream	0	2	1	28	21	low	.	.	low_entropy(1),mismatches(1)	CCCAGCCCGGTCTGTCGACCTTTACTGCACAGCTGCCAGCGCCACAGCCCCTGGCCTCATCCGCAGGCCACAGCACAGCCAGTGGGCAAGGCGAAAAAAAGCCTTATGAGTGCACTCTCTGCAAC...CAAGCACATGTTCGTACACACAG|CATGCATGTGTGGGTATGAGCAGACAAGCAGACTTACCTTTGGAGGGTGAAGACCCAGACAAACTGAAGAAACGGATTCCTGAGGATGATCAAATACAAATCATTTTTCCAGAATCACTCAATATTGCCACATCCCAAACTAATTCTAGACTAATCTTTAGAAAGAAGTAAGCTCCTTAAG	out-of-frame	KHMFVHT|acmcgyeqtsrltfgg*	.
TALL080	BEND3	C6orf203	-/-	+/-	6:107070950	6:107044532	CDS	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	0	1	low	.	.	.	AAGCACTCTGTGGACAGCGTCCTCACTGCCCTGCAGGACTCCAGCAAACGAAAGCAGCTGGTCAGCGATGGCCTGCTAGACTCTGTCCCCGGCGTGAAGAGGAGGCGGCTGATCCCCGAG___G...|...AAGATCATTAAGGCTGCAAAAGTGAAAGTGCCTGTGTGTCTGAAGCCTGTAGCTGATTCCCACCAGCTTGACGTGGAGGACCACAAAGGACCTCAGAGAAAGAAGAGGAGCCAGAGGGAAAATTTGGGACAGCATTAATTGAGTTACTAGCAGAGTAAGAGACGAAAACATCTGGCTGTCATTTTAG___CCCCGT	.	.	.
TALL080	BTBD8	BTBD8(19122),KIAA1107(94)	+/+	./+	1:92147786	1:92166958	CDS	intergenic	deletion/read-through	downstream	upstream	3	0	0	6	5	low	.	.	.	CCCAAGAGTACGTTACTCTTCAAGG___TATAAGCCATGTAGAACTGAATGTTATGATGCATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACTAATGTTGG___...ATTACTGTAATTTCTTTC...___CCTGTTCCCAGAACATTGACGTCTATACTAGAATGCCTGATTATTGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCA	out-of-frame	PVPRTLTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaalt	.
TALL080	RGS13	RP11-92K2.2(13742),RP3-419C19.3(66143)	+/+	./+	1:192647987	1:192730390	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	1	590	5	low	.	.	.	AAAAAAATGATCATTGTTTATTTGAAGCTTG___ATGATATTCTAACGCTGCCTTTTCTCTTCTCATTTTAGAG___AAAAATGAGCAGGCGGAATTGTTGGATTTGTAAGATGTGCAGAGATGAATCTAAGAGGCCCCCTTCAAA___CCTTACTTTGGAGGAAGTATTACAGTGGGCCCAGTCTTTTGAAAATTTAATGGCTACAAAAT|CCAAATGATTTCAACACAATCTACTACCAGATGTCTTCTGTTTC...ATGATACATTCATAGATAAACAGATGATAAATGTTGGCTCTATTTGTTTTGTTATAGAAATAAAAATTTACCTCAGGAATTATAAATTGTGTTTATAGAGTAGAATTCAATATTACAATGAAATG	out-of-frame	MSRRNCWICKMCRDESKRPPSNLTLEEVLQWAQSFENLMATK|sk*	.
TALL080	SPATA2L	RP11-368I7.4	-/-	-/-	16:89698195	16:89682795	splice-site	exon	deletion/read-through	upstream	downstream	1	2	0	122	14	low	.	.	low_entropy(1),mismatches(1)	CGCCGCGGTGCACCTGTACCTGCTGCCCTGGAGGAAGGAGTTCACCACCATCAAG___ACCTTCTCTGGGGGCTACGTGCACGTGCTGAAGGGTGTGCTCTCAGACGACCTCCTCCTGAAGAGCTTCCAGAAGATGGGCTACGTACGCAGAGACAGCCATCGGCTCATG|GACCCACTGACTGATGATGGCTCCACCTGGACCTGCCAACTACTCCTGCAGCCCCACCCAGAAGCGGTTCAGCACACGGGAGGATCCTGTCTCACACCCTACGATGGCCCCCCGCCCCCACAACCCATCAGCAGCAAGCACCCACTGCCAAGCTACCCCACCCCTTCCCCC	out-of-frame	AAVHLYLLPWRKEFTTIKTFSGGYVHVLKGVLSDDLLLKSFQKMGYVRRDSHRLM|dpltddgstwtcqlllqphpeavqhtggscltpydgppppqpisskhplpsyptps	.
TALL080	SPATA2L	RP11-368I7.4	-/-	-/-	16:89700930	16:89682842	splice-site	splice-site	deletion/read-through	upstream	downstream	1	1	0	126	7	low	.	.	.	CGGGCTGTGGGGCCGCGCCGACCTGGCGCCCGCGCTACGCGGCCTGGCTCGCGCCTTCGAGCTTCTGGAGCTCGCCGCGGTGCACCTGTACCTGCTGCCCTGGAGGAAGGAGTTCACCACCATCAAG|TACCTCGCAAGGGTTTTTTGCATGTCTGATACCTACGGCTCCAACAGGACCCACTGACTGATGATGGCTCCACCTGGACCTGCCAACTACTCCTGCAGCCCCACCCAGAAG...CACCCACTGCCAAGCTACCCCACCCCTTCCCCCAAACTACCTTTGGAACACCCTAGcCgCC	out-of-frame	GLWGRADLAPALRGLARAFELLELAAVHLYLLPWRKEFTTIK|ylarvfcmsdtygsnrth*	.
TALL080	EEF1A1P13	TRIO	-/-	+/-	5:14652241	5:14422266	exon	intron	deletion/read-through/5'-5'	upstream	downstream	0	0	3	90	1	low	.	.	low_entropy(2),mismatches(5)	GTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCcGGCTATGCCCCTGTATTGGAT...|...AAAGCCAGTTCC	.	.	.
TALL080	EEF1A1P6	DNAH11	-/-	+/-	7:22511283	7:21869562	exon	intron	deletion/5'-5'	upstream	downstream	0	0	3	1199	1	low	.	.	duplicates(1),low_entropy(1),mismappers(1),mismatches(10)	CCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTC...|...ATTCAATCTGTG	.	.	.
TALL080	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	0	2	1	6	5	low	.	.	low_entropy(1)	TGCTCATTCAGTTGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTC...GTTCAGTCTTTCTATGCTGTTCGTCACACAGAAAGCTGGAAGCTGATGAGCACAGATGATCAACAGAAAATCCAAGCAG___CTGCATTTGACAAAGGTGATGATCGAAGACTTGGCAAAAAGCC	out-of-frame	AHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfal	.
TALL080	DENND4B	GATAD2B	-/-	-/-	1:153937488	1:153828348	splice-site	splice-site	deletion/read-through	upstream	downstream	0	3	0	343	173	low	.	.	.	GTTTGAGTCTCTTCAAGAGCAACCTGGGGCCCTGCCTGTGCCAGGCCCTTCCCGTAGCGCCCCCAGCAGTCCTGCTCCTCGCCGTACCAAACAG|GATGGATAGAATGACAGAAGATGCTCTTCGC...GAGCGAGATGATGTCCTGGCAAAGCGACTCAAAATGGAGGGGCATGAGGCCATGGAACGTCTGAAAATGTTGGCATTGCTCAAAAGGAAGGATTTGGCAAATCTTGAGGTGCCACATGAGTTACCC	out-of-frame	FESLQEQPGALPVPGPSRSAPSSPAPRRTKQ|dg*	.
TALL080	SYNE3	GANC	-/-	+/+	14:95409544	15:42280611	3'UTR	intron	translocation	upstream	upstream	0	0	2	7	10	low	.	.	.	AAAACACAGGCTCGTGGTCTAAAAGCAAATGGTTCAGCAGGATGTTCAGGGCCTTAAAGCACAGTCAGCAGGACTCAGCATCTCCCAGCACCTGCTCTCCGGTTGTCATGGTAACATCATCCCC...|...ATTGTCTCATTTTCTTTCCTGTTTCCATTGTGTCTAACCTGAGAGAGTTGTAGTTGTCCATAGTCAGAGCAAGAATCCCTATCCATTCTTGAGGATGCTTAGTATATTGAGCACCTGGTCATGAAG	.	.	.
TALL080	MALRD1	PLXDC2	+/+	+/+	10:19790153	10:20001771	exon	intron	deletion/read-through	downstream	upstream	0	0	2	4	45	low	.	.	low_entropy(1),mismappers(1)	CGCTCAGAATA___ATACATGGACTCTCCTGGGTATTGGATTAGCATTCCTGATGACTCACATCACAGTTGCAGTCTTGTGTTTTCTTGCAAACAGAAAGGTACCAATAAG___AGGAGAAATGTGATGCT...|...ACAGATTGGCAGTATGGAGTTACTCAGGCCTTCCCTCACACAGAGGAGGAGGTGGAAGTTGATTCACACGCGTACAGCCACAGGTGGAAAAGAAACTTGGACTTTCTCAAGGCGGTAGACACGAACCGAGCAAGCGTCGGCCAAGACTCTCCTGAGCCCAGAAGCTTCACAGACCTGCTGCTGGATGATGGGCAGGACAATAAC	.	.	.
TALL080	FNTA	RP11-598P20.5	+/+	+/+	8:43082832	8:42657189	exon	intron	duplication	downstream	upstream	0	0	2	34	1	low	.	.	mismappers(1)	CACAGTCTTAGTAAAACTGTGTCTTGGCCGGGCGCAGTGGCTCATGCCTgTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACAAG|g|TCAGGAGTTCAgGACCAGTCTGGCCAATATGG...TTTAGTAGAGACGAGGTTTCACCACGTTGGCAAGGCTGGTCTCAAACTCTTGACCTCATGTGACCTGCACACCTCGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACCGTGCTTGGCC	.	.	.
TALL080	ADCK3	BAG1	+/+	-/-	1:226967897	9:33259027	intron	CDS	translocation	downstream	downstream	0	0	2	7	388	low	.	.	.	GCCTGATGTACGGAGCCATCTGTGGGTGTCTGTGTGCTGGAGGATTGCCCACAGCTATGATTCAGAGATGCTCATGTTGTTGCCCAAGCAATTGACAGATGATGTTTCAGGCTTGGAGATGGC...|...CCACAGGAAGAGGTTGAACTAAAGAAGTTGAAACATTTGGAGAAGTCTGTGGAGAAGATAGCTGACCAGCTGGAAGAGTTGAATAAAGAGCTTACTGGAATCCAGCAG___GGTTTTCTGCCCAAGG	.	.	.
TALL080	EFCAB10	ZHX3	-/.	-/.	7:105567304	20:41200857	3'UTR	intron	translocation	downstream	upstream	0	0	2	330	19	low	.	.	.	.	.	.	.
TALL080	OR7E38P(813),AC004967.7(1118)	AC004967.7	./-	-/-	7:97967887	7:98082263	intergenic	intron	duplication	upstream	downstream	0	0	2	20	1	low	.	.	mismappers(2)	GTTTTCTCATGTAAATAGTCTCTGTATTGAAAAGAACTGGGAGATTTAATAAGCTGAATTAATAATTCCCTAGAGCCTATATCTTGCTTGGCACATAGGAGATAGCCAAAGTCAACATCTATGT...CTTTGACTTACTTGATTtCTgTTGTTTTTTTGTTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGTAGCCTCTGCGTCCCAGGTTCAAGCCATTCTCCCGCCTCAGCTaC|TCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGGTTGCAGTG...AAGTGTGCCTTTAGAGTTCAGTGAATTCTTAAAACTGCTGCTGGAGAATTGTCCCAAACATATTTTTTTAACCTTTGTAGGACCTTTAGCCCATCAAAACCTGCAAAATCTTTACATACGCAGAA	.	.	.
TALL080	HSPA13	DDR2	-/-	+/+	21:14372796	1:162773730	3'UTR	intron	translocation	upstream	upstream	0	0	2	157	4	low	.	.	.	CCTTTATGTCCTGTACATCATTCTCTGCTTGGATTTCCATTATTCTGTTTGGTTAGAGAATAAAATTGGTAATTGCATTTGAAGAATGTGTTAATGTCATAATAAAGCCATGATTGCTATCTTATT...|...CCTTTTTCTTATTCCGATGGGGTCGGCAGTCCTCATCTTTTTCTCCACCTCTCTCAAACACAAAGGTACATTTTCCATTGTACTTGCCACATATTTACTTCCTAACCCCCTGTGCACAAGCACTG	.	.	.
TALL080	NFKBIL1	RP11-507M3.1	+/+	+/+	6:31548325	2:24162816	CDS	intron	translocation	downstream	upstream	0	0	2	50	4	low	.	.	.	CCGAGAACGTCGCTTTCGTCGTTACTTGTCTGCAGGACGGCTGGTCCGGGCCCAGGCCCTCCTCCAGCGACACCCAGGCCTCGATGTAGATGCTGGGCAGCCCCCACCACTGCACCGGGCCTGTG...|...CAATAACAAAAAGCTACATATAGTATGTTTTTTTATACAAAATGTTCAGAAAAGGCAAATCTGTAAAGACAGAAGGTAGATAGTAGTTGCTTAGGGCTGGGGATGGGAGTGGAGAGTGACTTAATG	.	.	.
TALL080	PRPF18	EPB42	+/.	-/.	10:13587024	15:43143794	5'UTR	intron	translocation	upstream	upstream	0	0	2	113	3	low	.	.	.	.	.	.	.
TALL080	RP11-1379J22.2	RP11-1379J22.2	-/.	-/.	5:179600934	5:179603799	intron	intron	duplication	upstream	downstream	0	2	0	13	5	low	.	.	.	.	.	.	.
TALL080	DLGAP4-AS1	DLGAP4-AS1	-/.	-/.	20:36510765	20:36511663	intron	intron	duplication	upstream	downstream	2	0	0	5	0	low	.	.	.	.	.	.	.
TALL081	MTAP	RP11-408N14.1	+/+	-/+	9:21802781	9:22210664	splice-site	intron	deletion/5'-5'	downstream	upstream	24	33	1	140	92	high	.	.	duplicates(3),low_entropy(11),mismappers(2),mismatches(7)	CCCGCCCCTGGTCTCCGCACTGCTCACTCCCGCGCAGTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG|GAAAAGAAAAATACGACACATAGCCATGATTGAAGACGTGTACCTTCATCTGAGAAGACATCTGCAAATATTCTGGTCACTATTAAACTA...___AGGCTGAAAACTTAAAAAATTGGATGAAAATTATGAAGATAGTCTGACATGATATATTAAGAGCTCTG...___CTGCTCAGTGAAGGAGAGACTTCGTTGAAGAGTATTGAATTTGGTGATGTGTAAGAGACCTGGGAAGTAGAGTGCC...___G	out-of-frame	MASGTTTTAVK|ekkntthshd*	.
TALL081	LA16c-352F7.1(65532),RP11-118F19.1(23646)	GSE1	./+	+/+	16:85556363	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	19	18	9	68	122	high	.	.	duplicates(1),mismatches(6)	ACTTGTTTGCAATCGCCGCCTCTTTTATTTACGAGAAGAAATCTCCCCCTCG___...CAAGTCCAAAAGGCAGAAAATACACACGCG...___...CCAGGGCCAAGG...___...TTTTGATCATCTTGCGGGGC...___...GGGGGGGGAAAGACTGATTTTTTTTTTTCGTCGCTCTCGGGATCGCTCTTCTGCCTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGgCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTCCAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAG___GATGCCGGCTCCAGGAGCAGCAGTGGAG	.	.	.
TALL081	STAG2	LMO2(62504),CAPRIN1(96890)	+/+	./-	X:123961856	11:33954793	splice-site	intergenic	translocation	downstream	downstream	1	15	3	28	131	high	.	.	duplicates(3),mismatches(1)	AACAACATTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGATCTCTCCATCCCTTCCGAGGCCCGACTTCG|ACTTTGTGTTGGAGAAGATTAAGGAGGTGAAGGGAAAAGAAAATCCTGTTCTATTCGCCTATTAAATAAAGGAAGAAATGGGAGCCGGGAGATTAGGGAACTGATCAAGAAGTACTGCAGAAgGAAGACATCCATGCGGTCCTTTGCTGTCCTCTCTCCTACACTGCAGCGGTGGCCATTTTTGCTTCGCTGGGCTCCACGGATCTGGAGGAGCAACAGATCTGCACATCTGAAT___GTCAGGAATTTGGAGAAGACATGGTGCGACGGCT...___ATGTG	.	.	.
TALL081	MTAP	RP11-408N14.1(86928),DMRTA1(145241)	+/+	./+	9:21802781	9:22301600	splice-site	intergenic	deletion	downstream	upstream	2	4	0	140	36	high	.	.	duplicates(1),low_entropy(2),mismatches(1)	GGGGAGGAAGAGGAGGAGTCAAGGCCCGCCCCTGGTCTCCGCACTGCTCACTCCCGCGCAGTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG|AGGCTGAAAACTTAAAAAATTGGATGAAAATTATGAAGATAGTCTGACATGATATATTAAGAGCTCTGAATGATGCCTAGGGATGTAGAAGAGGAGAAAAACACTTGA___GTCAACCTTCTGGGATACAGAGTGGATGGGGAAGAAGAGTTGATCTGGAAGGATAAAGGTAC	out-of-frame	MASGTTTTAVK|rlkt*	.
TALL081	RNU6-804P(3084),CTC-493L21.1(80484)	RP11-72L22.1	./+	+/+	5:86666334	5:87137454	intergenic	splice-site	deletion	downstream	upstream	2	3	1	43	22	high	.	.	duplicates(1),mismatches(2)	GTCTGCCCTCCCCcAAGTAGGGTCTTGTCTTTCTCTCTGCCTCAACGATTGGTGACGCTTTGGTTAGCTCGTCTGTTAGCCTCGGTTCTGGAGTGAGGATGACACGGAACAGAGCACCCAGTCTACCCACATGGACAGGAAGTGTGAGCAAAAA|CATGTTCCAGAAGGCCAGGGCGGTCGGTTCTGCTGCACAAATGAGGTCAGAGCAATCAAGAGAGCCAAGGAAGTCCTACTTATCTGGATTAAATAACTCAATCTACAAACTACTCAACTTTAATATAAGGTGGAAAATAGGATTTCAAAAGAAAAGAAGAAGGAGAAGAACAAGGACAAGAAACTGAGTTTTtGCAGAAGGCtAG	.	.	.
TALL081	PLEKHA5	SLCO1B7	+/+	+/+	12:19132450	12:21015639	splice-site	5'UTR	deletion	downstream	upstream	0	3	2	20	8	high	.	.	.	GGCCGAGTCTTCTTCATCAA___CGAGGAGGCCAAGAGCACCACCTGGCTGCACCCCGTCACCGGCGAGGCGGTGGTCACCGGACACCGGCGGCAGAGCACAG___ATTTGCCTACTGGCTGGGAAGAAGCATATACTTTTGAAGGTGCAAGATACTATATAAA|ATCTTCTTGACACTCCTGTCATTCAGCTATGTTGCTAAAGCACTAGCTGGAATTTTTATGAAAATATCAACCACTCAAATAGAAAGGAGATTTGAGATATCCTCTTCTCTTGTTGGTTTAATTGATGGAAGCTTCGAAATAG___GAAATTTGTTTGTGATTGTATTTGTAAGTTACTTTGGATCTAAACTACACAGACCGAAGTTAATTGGAATTGGTTGTTTTCTTATGGGAACTGGAAGTATTTTG	out-of-frame	GRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYIk|ss*	.
TALL081	STAG2	LMO2	+/+	-/-	X:123961856	11:33954793	splice-site	intron	translocation	downstream	downstream	0	2	3	28	131	high	.	.	.	GTGACGGGCCCCTCTGCTTgTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGATCTCTCCATCCCTTCCGAGGCCCGACTTCG|ACTTTGTGTTGGAGAAGATTAAGGAGGTGAAGGGAAAAGAAAATCCTGTTCTATTCGCCTATTAAATAAAGGAAGAAATG...GTCCTCTCTCCTACACTGCAGCGGTGGCCATTTTTGCTTCGCTGGGCTCCACGGATCTGGAGGAGCAACAGATCTGCACATCTGAAT___...GCAGATCCCCCCATCCCTGCTGACATGCGGCGGCTGCCAGCAGAACATcGGGGAC...___GCTTTTTGGGCAAGACGGTCTCTGCGCATCCTGTGACAAGCGGATTCGTGCCTATGAGATGACAATGCGGGTGAAAGACAAAGTGTATCACCTGGAATGTTTCAAATGCG	.	.	.
TALL081	AC079781.7(19658),AC079781.8(10357)	ASNS	./-	-/-	7:97928082	7:97872449	intergenic	5'UTR	deletion/read-through	upstream	downstream	10	24	4	95	48	medium	.	.	low_entropy(2),mismappers(1)	AGGCCGCTTGCGCCGGGTCCTTCTTCCCCAAATGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGGGAGGAGGACGACGTCCCTCCCGAAGAGAAGAGGCTGCGGCTCTTGCTGGAGGGGGGAAGCGCACAGCCCCAGGACTGCGAGGACGGGGAGGACGCGCCGCGGCCGGGCAGGGAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|GAGCCAGGTCGGTATAAGCGCCAGCGGCCTCGCCGCCCGTCAAGCTGTCCACATCCCTGGCCTCAGCCCGCCACATCACCCTGACCTGCTTACGCCCAG___ATTTTCTTCAATCACATCTGAATAAATCACTTGAAG___AAAGCTTATAGCTTCATTGCACCATGTGTGGCATTTGGGCGCTGTTTGGCAGTGATGATTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGTCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAG	.	.	.
TALL081	RP11-421L21.3(44106),SCARNA16(1779)	DPH5	./-	-/-	1:101131374	1:101021765	intergenic	splice-site	deletion/read-through	upstream	downstream	2	17	0	187	375	medium	.	.	duplicates(1),mismappers(2),mismatches(2)	AAGACACTCACTGGTGGGTCTGAAATCACTGCTGCAATTGCTTCCTTTGTCAGGATTAAGCCAAGGCACTGAGCAGGGCTGAGCCTGCAAACTGAAGTCCCTCAGTTCTACGCCTGAGCAAG|GAAGAGTTTTATGGAAGAAAATTGGTTGTTGCTGATAGAGAAGAAGTGGAACAAGAAGCAGATAATATTTTAAAGGATGCTGATATCAGTGATGTTGCATTCCTTGTGGTTGGTGATCCATTTGG___GGCCACAACACACAGTGATCTTGTTCTAAGAGCAACAAAGCTGGGAATTCCTTATAGAGTTATTCACAATGCCTCCATAATGAATGCTGTtGGCTGCTGTGGTTTACAG___ACACTTGGAGACaAG	.	.	.
TALL081	RP11-1415C14.3	RP11-848G14.2(1851),RP11-848G14.5(6063)	-/-	./-	5:70219918	5:69625900	exon	intergenic	deletion	upstream	downstream	11	5	0	841	66	medium	.	.	low_entropy(1),mismappers(2),mismatches(2)	CCAGTTCAAGTTGGAAGTGTGTCTTTTGAATGCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTGTACTCGTGGGAG___GATGGTGATTGCTCACACCAAAGCCTTGGACCCCTCCCAGCCTGTGACCTTTGTGACCAACTCCACCTACGCAGCAGACAAGGGG___GCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTATCGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGGTGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAGGGTTTCACCAG|TCTTTCCCAGGGAACTCCGATGAAGTGTTCCAACAAAATGAGCGAGTGAACCAAGAAGAGGATGACATTAGATCCAGGAGATACAACAGAGGAGATAATCTCCAGGATGCCTGTGAAGAAAGATCCCTGGATCCCAGGATGATTATAGGACAAGTTGTTCATAATCCAGCAGGCCAGAAGACTTCCAGGGAAACTCATTCAAGGAGGTGAAAATGATGGATGACTCCTCCAAGATGAAAATGGACCAGCCGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTTGAAACTAGCCTGGCCAACGTGGCAAAAC	.	.	.
TALL081	SERF1B	SMN2	+/+	+/+	5:70026515	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	2	10	2	93	320	medium	.	.	duplicates(1)	TCCGTTGGTGGTCGGCATGGCCC___GTGCGAGTTTGTGCGGTAAAGAACACACCCCGGAGATGTGGACACGGCCGCCCCAGGAGGGTCCTTGTTTGGAG___GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGG	out-of-frame	MAraslcgkehtpemwtrppqegpcleVEINENLPARKT*RKPRKLARERGKRIA*LPLRESR|er*	.
TALL081	SERF1B	SMN2	+/+	+/+	5:70041631	5:70063415	splice-site	splice-site	deletion/read-through	downstream	upstream	0	0	0	19	320	low	.	.	duplicates(1),read_through(9)	GAGGGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCC___GTGGAAATCAACG...CAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG|AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAG___CATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGCAGCTTCCTTACAACAG___TGGAAAGTTGGG...CCAATCTGTGAAGTAGCTAATAATATAGAACAgAATGCTCAAGAG___AATGAAAATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGC	out-of-frame	KMSAGPHLPLKAPRENPCFPLPAAGGSr|amiltfgmiqh*	.
TALL081	RP11-680G10.1(40371),AC092377.1(41603)	GSE1	./+	+/+	16:85399820	16:85633914	intergenic	splice-site	deletion/read-through	downstream	upstream	3	3	0	12	122	medium	.	.	low_entropy(2)	CCTCAGCACATGTTTATTGAGCACCTACTGTGTGCCAATCACTGCCGTAGGCGTGGGGGATGCCGCAGACgGTGAAACGGGCAAGGATACCTACACTTGGCGGGGTGCACATTCTGCTGAGTTtGGGGGAAGAATGGATTAGGAATCTGTGCTTCGCTCCTAGAAGAGCCCCTGGCAGGTG|GCATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCGCCAAACAGGCGGAGGAGCCCAGAG___GGTCCTCACTGAGCAGCGAGTCGTCCCCCGTGTCCTCTCCGGCCACCAACCACAGCTCCCCCGCCAGCACACCCAAGCGCGTGCCCATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCAC	.	.	.
TALL081	JAK3	JAK3	-/-	-/-	19:17826361	19:17836340	3'UTR	intron	duplication	upstream	downstream	1	1	4	144	103	medium	.	.	.	AGTGGGGCTCTCTGAGTCCTGGCCCAAAGAAGCAAGGAACCAAATTTAAGACTCTCGCATCTTCCCAACCCCTTAAGCCCTGGCCCCCTGAGTTTCCTTTTCTGTCTCTCTCTTTTTATTTTTTTTATTTTTATTTTTATTTTTGAGACAGAGCCTCGCTCTGTTACC|ACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCTGTCTCAAAAGAAAAGAGAAAAAAAAAAGTGAGATACAGATACAGACAGGGCTCAACACCTTCCAGGCATTCCAGGCAAATCATTCAGAGATGGAGGTGGGAGGAGAGGTGAGTACTGTATGAACAGAGGCAGCAGGGGAGGGAACAG	.	.	.
TALL081	SOD1	SOD1	+/.	+/.	21:31661524	21:31662744	intron	intron	duplication	upstream	downstream	2	0	3	15	21	medium	.	.	.	.	.	.	.
TALL081	RP11-460N20.4(2926),RP11-460N20.5(2397)	RP11-479O9.2	./.	+/.	7:65081706	7:65773650	intergenic	exon	deletion	downstream	upstream	2	1	0	8	7	medium	.	.	.	.	.	.	.
TALL081	AIM1	AIM1	+/+	+/+	6:106569321	6:106559999	3'UTR	intron	duplication	downstream	upstream	2	0	1	76	22	medium	.	.	.	TGAAAGGTAGAGAACTGTTTAGCATCTGAGAAGAAATACTTTATTAGGCCTGTAATTTTGGTTCTTGGCCTTAAAtAtTTTCTGGAACCTTTAAATAgGCTGCATAGCACAATGGGAAAGCCTT...TTCATATTAAAAATTAATACATTTTAAAAATTTAATGTCAAAGTCTGGTAACATTTGTTAGTAGGATTTGAGTTATTATTTTTTGAGACAGGATCTCAGGCTGGAGTGCAGTGGCACAATCACGGCTCACTGCAGCCTCTACCTCCCCAGGCTgAG|GTGGGAGATCACTTGAGTCTGGGAGGTTGAGGCTGCAGTGAGCTGTGATCGTGCCACTGCCCTTCAGCCTGGGCAACAGAGTGAGACCTACCTGGAAAAAAAAATTATAGAATATTAGGGTGGTAGAATTATGGGTGATTTTTTTGCAGTAGGTTTTAATATTTTGTTTTTAT	.	.	.
TALL081	EXOC7	EXOC7	-/-	-/-	17:76101616	17:76102340	intron	intron	duplication	upstream	downstream	1	1	1	12	23	medium	.	.	.	ACGGAGAATCTGCAGCGGCTGCAGGAtAATGTTGAGAAGACGCTGTCCTGCCTGGACCATGTCATCAGCTACTACCATGTGGCCAGTGACACTGAGAAGATCATCAGAGAGGGGTGAGTGAGTGAGGCCCAGAGGGTCAATTCCTAATGCCTCCTGGGCCAACAGGAGGGTTGGTC|AGCCTCCCAAATTCTGGGTATTACAGGCATGAACCATCACGCCCAGCCTCTAGTCCTTATTCAATGAGTTTCATCCTTAGAGAGGGTTTTGAAGATACAGCAATGCATTTGAGGCTACTCTGTATGAAACTACTTCCAGTCCGGTTTAGGAATGCTTCAGAGAGAACAGAAGTTGAGATTTGGCTTCAAAGGGTGGAA	out-of-frame	TENLQRLQdNVEKTLSCLDHVISYYHVASDTEKIIREg*vseaqrvns*cllgqqegws|asqilgitgmnhhaqplvliq*	.
TALL081	SYNCRIP	PNRC1	-/-	+/+	6:85642797	6:89083753	splice-site	splice-site	inversion	upstream	upstream	0	3	0	485	1286	medium	.	.	.	CTCCACTCGCGCCGGACACAGGGAGCAGCGAGCACGCGTTTCCCGCAACCCGATACCATCGGACAGGATTTCTCCGCCTCAGCCCAACGGGGAG|GTTTTAAAATCAAAGATGGGAAAATCGGAGAAAATTGCCCTTCCCCATGGCCAGCTTGTTCATtGTATACACTTGTATGAGCAACCAAAGATAAACAGACAGAAAAGCAAATATAACTTGCCACTAACCAAGATCACCTCTGC...GAAAACAACTTTTGGCAGGATTCTGTTTCATCTGACAGAATTCAGAAGCAGGAAAAAAAGCCTTTTAAAAATACCGAGAACATTAAAAATTCGCATTTGAAGAAATCAGCATTTCTAACTGAAGTGAGCCAAAAGGAAAATTATGCTGGGGCAAAGTTTAGTGATCCACCTTCTCCTAGTGTTCTTCCAAAGCCTCC	.	.	.
TALL081	JARID2	PTP4A1	+/+	+/+	6:15246584	6:63576436	splice-site	splice-site	deletion	downstream	upstream	3	0	0	283	1700	medium	.	.	.	AG___GCGAATCTGGCTTTGGGGGAAGAGGAAGAAAAGTCGGATTACAAGATCAACCACCACCAACAACAATAAAAACCACCAGGATATTTTTTTGCAAATTTCTGACGGCTTTAAATTCATGAAGCAATTGTCCCCTTTTGCAATCAGCATTTGGATCTCAGAATGAGCAAGGAAAGACCCAAGAGGAATATCATTCAGAAGAAATAC|CAATTCTGTGGTGTTCTTGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGAGATTACTGCCAGGCACAGCACGACCTCTATG	in-frame	MSKERPKRNIIQKKY|QFCGVLGHTFMEFLKGSGDYCQAQHDLY	.
TALL081	ULK4P2	ZNF43	+/+	-/-	15:30585924	19:21809807	splice-site	splice-site	translocation	downstream	downstream	2	0	0	25	83	medium	.	.	.	AGTGCCTTTGTAATTTAGCAAATATCATTTTTGGTGTACAGTATAAATTTCCTTTTTATAAAGATCTGAGTTTTTAACTTTGCTGTCACTTTCTGTGTTTCATGACTTAAATATTTTAATTTTTT...AGTTCCAATTGCTAATCCAGCATTTGTGGATAGCTGCAAACTGTGATAT|TTATGTGTTCTCATTTTACCCAAGACTTTTGGCCAGAGCAGCATATAAAAGATCCTTTCCAAAAAGCGACACTG	.	.	.
TALL081	AIG1	POLDIP2	+/+	-/-	6:143061066	17:28355876	splice-site	splice-site	translocation	downstream	downstream	0	2	0	215	238	medium	.	.	.	GCCATCGAAATGCCCTCACACCAGACCTACGGAGGGAGCTGGAAATTCCTGACGTTCATTGATCTG|AAACCGACCAGAGGGCAAAGTGTTGGAGACAGTTGGTGTGTTTGAGGTGCCAAAACAGAATGGAAAAcATGAGACCGGGCAG___CTTTTCCTTCATAGCATTTTTGGCTACCGAGGTGTCGTCCTGT	out-of-frame	AIEMPSHQTYGGSWKFLTFIDL|kptrgqsvgdswcv*	.
TALL081	MTMR6	RP11-78J21.7	-/-	+/+	13:25261668	13:52632422	splice-site	splice-site	inversion	upstream	upstream	2	0	0	68	89	medium	.	.	.	GTAGTCAGCCACTCTCTGGATTCAGTGCCAGGTGCCTGGAGGATGAACATTTGCTTCAAGCCATTAGTAAAGCCAATCCAGTCAATCGCTATATGTACGTCATGGATACCAGGCCAAAA|GAAAAATATATTCAGGGGGAAGAGATGTAATAGATTTCACATTATGGCAGTTACTAAAGAAGCACGTGAACAG___ACACATCAC	out-of-frame	SQPLSGFSARCLEDEHLLQAISKANPVNRYMYVMDTRPK|ekyiqgeem*	.
TALL081	MTMR6	MRPS31P4	-/-	+/+	13:25261668	13:52632422	splice-site	splice-site	inversion	upstream	upstream	2	0	0	68	89	medium	.	.	.	GTAGTCAGCCACTCTCTGGATTCAGTGCCAGGTGCCTGGAGGATGAACATTTGCTTCAAGCCATTAGTAAAGCCAATCCAGTCAATCGCTATATGTACGTCATGGATACCAGGCCAAAA|GAAAAATATATTCAGGGGGAAGAGATGTAATAGATTTCACATTATGGCAGTTACTAAAGAAGCACGTGAACAG___ACACATCAC	out-of-frame	SQPLSGFSARCLEDEHLLQAISKANPVNRYMYVMDTRPK|ekyiqgeem*	.
TALL081	AGPAT5	NFE2L2	+/+	-/-	8:6708393	2:177234271	5'UTR	splice-site	translocation	downstream	downstream	0	2	0	5	112	medium	.	.	.	CAACGGGCGACCAATCAGAAGGCGCGTTGTTGCCGCGGAGCCCCCTGCCCCGGCAGGGGGATGTGGCGATGG|GACATGGATTTGATTGACATACTTTGGAGGCAAGATATAGATCTTGGAGTAAGTCGAGAAGTATTTGACTTCAGTCAGCGACGGAAAGAGTATGAGCTGGAAAAACAGAAAAAACTTGAAAAGGAAAGACAAG	.	.	.
TALL081	CRTAP	GLB1	+/+	-/-	3:33114548	3:33077237	splice-site	splice-site	inversion	downstream	downstream	1	0	1	75	2	medium	.	.	.	CGCGCGCACTGCCTCAAGCGCTGCAAGCAGGGCCTGCCAGCCTTCCGCCAGTCCCAGCCCAGCCGCGAGGTGCTGGCGGACTTCCAGCGCCGCGAGCCCTACAAGTTCCTGCAGTTCGCTTACTTCAAG|TCTCGATTCCTTCCTTGGGCTTTTCATCTGCCACGGCAAGCGCCTAAGTCTCAGCTGCCG...AAGCAGCAACAGGAGTGGGAGAAGAAGGAGGCGGCAGCAGTGG___AATGCCACCCAGAGGATGTTTGAAATTGACTATAGCCGGGACTCCTTCCTCAAGGATGGCCAGCCATTTCGCTACATCTCAG	in-frame	RAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFK|SRFLPWAFHLPRQAPKSQL	.
TALL081	CRTAP	GLB1	+/+	-/-	3:33114546	3:33072715	splice-site	splice-site	inversion	downstream	downstream	1	0	0	75	156	low	.	.	.	CCGAGCTGCGCCTCTTCGGGGGCCTGCTGCGCCGCGCGCACTGCCTCAAGCGCTGCAAGCAGGGCCTGCCAGCCTTCCGCCAGTCCCAGCCCAGCCGCGAGGTGCTGGCGGACTTCCAGCGCCGCGAGCCCTACAAGTTCCTGCAGTTCGCTTACTTCA|AGAATGCCACCCAGAGGATGTTTGAAATTGACTATAGCCGGGACTCCTTCCTCAAG	in-frame	ELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYF|knatqrMFEIDYSRDSFL	.
TALL081	HRH2	RNU6-226P(3775),CTC-251I16.1(1824)	+/+	./+	5:175684309	5:175707779	splice-site	intergenic	deletion/read-through	downstream	upstream	5	1	2	16	13	low	.	.	duplicates(1),low_entropy(2),mismatches(1)	ATCGTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCTGCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGACCCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTCACGGCCCCCCAGGGAGCCACAGACAG|GAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGAGCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATCGGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAGGCTGTCTAGACCTAGCCCCAGGACACTGAAGATACCGC...GGACCCAGTCTCCAAAGCCACCAAGGACTCACCCTGGACTGAATCTGGGGGCTCCCAGAACACACAGCTGGGTGTGGGGTCCTCAGGCCTAGGGCGGAACAGCCTATTCTGTGCTCAGCATTCC	out-of-frame	IVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDr|kpalscttcssnllscckslwglrflqrhmggpseelsgeplseepqkrppqkavrtlpseav*	.
TALL081	AC012501.2	GALNT13	-/+	+/+	2:153510977	2:153732769	intron	5'UTR	deletion/read-through/3'-3'	downstream	upstream	2	6	0	27	33	low	.	.	low_entropy(1),mismappers(1)	GGAAAGAGTTACCCAGCAAATACAAGCAGAAGGAGAGAGTGGGCCACTCTGTGGTATCTCGCAATGGAGCAGACACTGTTGGACAAGAGCAGATTCACTGGAGAG|GTAACAAGTTGGAAGACTTTGGATCTCAAGAAAAGTGGATTTTGCCTCTACCGTAGAGATAG___ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGTGCCACATACA___TGGAATGTATCCTGCTTTCATCTTGGAGTTCACCTGTGTGGCTTGGATTTA...AAAGACATGAGGAGATTTGaCTACTGCAAGGTGGTTCTAGCCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCTTACTGCTGTACTTCAGTGAATGTAACAAATGTGATGACAAGAAGGAGA...AGAGCTGTTTAAAATCAATCAGTTTAACCTTATGGCCAGTGATTTGATTGCCCTTAATAGAAGTCTGCCAGATGTAAGATTAGAAGG___ATGTAAGACAAAAGTCTACCCTGATGAACTTCCAAAC	.	.	.
TALL081	BTBD8	KIAA1107	+/+	+/+	1:92147786	1:92166958	CDS	5'UTR	deletion/read-through	downstream	upstream	0	7	1	15	12	low	.	.	mismappers(1)	GTGGTGGCAGGCGCCTGTgATCCCAGCTACTCAGGAGGCTGAGGCgGGAGAGTCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCTGAGATCGCgCCgCTGCACTCCAGCCTGGGTGACAG...TGGAGTGGAAAGTCTTTTTGCTGACTGCATGAA___GTGGATTGTAAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAAATATACCTCCTGAGATTCAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTA|AATGATAAGAATGCTGCTTTTCTTCTGATGGAAAGTGACAGGCTAATCATCAGTTTACCCAGAGTGAAGTGGACGGAAGCAGCACTGACCATGGCGTCTCAGCTTCAAGAAAAATGTATTGCATTTATTGTAGACAACTTCTCCAAGATTATTCAGAGTGAAAATTTTGCTCTTCTTTTACAG___TCACAAGCAATGAGCAGCACAGCCGATCTGTTGGACACAATTTTAAAAGCAATTGAAGAAAATATCACCACTGAAAATAGCTGCTCTCTTCTTATGGCTCTGGACACACTGCTGAACTCTGACAGTACAAAGGAA	in-frame	GVESLFADCMKWIVKHFARFWSERSFANIPPEIQKSCLNMLIQSL|ndknaafllmesdrliislprvkwteaaltmasqlqekciafivdnfskiiqsenfalllqsqaMSSTADLLDTILKAIEENITTENSCSLLMALDTLLNSDSTK	.
TALL081	ANKRD36	RP11-734K23.9	+/+	+/+	2:97245640	2:97284044	CDS	splice-site	deletion/read-through	downstream	upstream	1	3	3	126	297	low	.	.	.	AAACTGGAGAAGCAAAGAGAGAGCAGGCAAAGACTGGAAACAGAAATGCAATCATACCATTGTAGACTGAATGCTGCTCGATGTGATCATGATCAAAGTCACTCATCAAAAAGAGACCAAGAGCTTGCTTTCCAGGGCACAGTAGATAAATGTCGTCACTTACAGGAAAATTTGAATTCTCATGTTCTGATTCTTTCTCTGCAACTTTCTAAAGCTGAGA|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAGAGAAGGAACAACTAGAGGGAGAAGCCAAG___ACACTACCCAAAGCAGTGCTTCACTAC	out-of-frame	KLEKQRESRQRLETEMQSYHCRLNAARCDHDQSHSSKRDQELAFQGTVDKCRHLQENLNSHVLILSLQLSKAE|sdgis*	.
TALL081	ANKRD36	RP11-734K23.9	+/+	+/+	2:97250173	2:97284044	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	3	97	297	low	.	.	.	GTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG|GTGATGGCATCAGCTGAGAAGGGAAGGAAGCCCATGAGAGGACACTGAAGAAGGAGTGAGCAGACAATAAGAAGCCCACAGAAGACAG...AGCGGGCCTCTTTGGGGATTCCAGGTGGAAGTGTTGGACATCTGTAGTATTCCTGGTCTCGAATCATCCTGATATTCTTCATTTTGTTATTCACATTGGACTAGG___CAGGAACAAAGATCACCA	out-of-frame	LMLQVFES*mk|vmasaekgrkpmrgh*	.
TALL081	ANKRD36	RP11-734K23.9	+/+	+/+	2:97233871	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	0	2	1	44	362	low	.	.	duplicates(1),low_entropy(3)	GGGAGAGCAAAAGAGGCTTGAAGAATATGAAAATAACCAGCCACAG___GTGAAAAACCAAATACATTCTAGGGATGACCTTGATGACATAATTCAGTCATCTCAAACAGTCTCAGAGGACGGTGACTCGCTTTGCTGTAATTGTAAGAATGTCATATTACTCATTGATCAACATGAAATGAAGTGTAAAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTT	out-of-frame	GEQKRLEEYENNQPQVKNQIHSRDDLDDIIQSSQTVSEDGDSLCCNCKNVILLIDQHEMKCK|vspqtlpkavlhysgrqt*	.
TALL081	ANKRD36	RP11-734K23.9	+/+	+/+	2:97250173	2:97284690	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	2	97	362	low	.	.	low_entropy(2)	ATCAGCAACAAAAGCTCTGCTGGATGCTTCATCGCGcCACTGCACCTATTTAGAAAATGGGATGCAGGATTCAAGGAAGAAATTAGACCAGATGAGAAGTCAA___TTTCAAGAAATACAGGATCAAC...A___GCTTGAAGTAGAACATGTGATGATGAGAAAAATTATTAAAAAACAGGATGACCAAATTGAGCGGCTTGAGAAAATCCTGCAGCATTCAAGTTTG___ATGCTGCAGGTGTTTGAGAGCTAGATGAAG|TTTCTCCACAGACACTACCCAAAGCAGTGCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGGCAG___GTCACCAACCAGTGTGGAGGCTAAAAGCGGGCCTCTTTGGGGATTCCAG	out-of-frame	A*SRTCDDEKNY*KTG*PN*AA*ENPAAFKFDAAGV*Elde|vspqtlpkavlhysgrqt*	.
TALL081	AP000783.1	GRAMD1B	+/+	+/+	11:123431166	11:123480816	splice-site	5'UTR	deletion/read-through	downstream	upstream	2	5	0	45	18	low	.	.	low_entropy(4)	CTGCAGGTGCCCGAGCCGCAGGGTGCGCCCGAGGGCAGCCCGGTCTGGTCCAGTTCGTCGACCCCCACGCTTCGCCGCCGGCGCTTCAAGATGCGCCGCATGAAGAACGTACAGGAGCAGAGCC...GGACACCCCGTGGTCCAACTGCTCCACACCCAGCGCGTCCCCGCGCCGAAAACGCTTCCTCCTCCGCAAGTGGCTGAGGGTGAGGGAGCGGAAGGAGTGCAGTGAAAGCAG|CAGCCAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG___CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGAGTTGGTA	.	.	.
TALL081	AC006272.1	FPR3	-/-	+/-	19:51839893	19:51813977	3'UTR	intron	deletion/read-through/5'-5'	upstream	downstream	4	3	0	16	9	low	.	.	low_entropy(1),mismappers(1)	CAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCCAGAAAATGGCCATCTCGCTATCTGTAAGAAGCATCTTCCAAGACTGCTGCTTCCATGTGCACGCCTGGTTTCAAAGTCTGTAGACATCTTGTGTTCCGCGAAGGTGCTACTGAGTCTGCACAAGAGCGTGACTACGGCAGTGAGTGAAGAGGTTACGGAAACCTGCTAGTCCTCAAGCGAATGTTTGTGCGACTCCAGCTGTAGG|GGGCTTCTTGAAAGTGACCACAGAATGGCTGCCACTGTTCTGGACATCACATCAACGGGCCCTCCAGAGCCAGAAGGATGAAGATAAACAAAAAAACTGGCTTCATTCACATGCCTGTCTCATTTTATAAAGGAGGAAAACATCGGCCAGCTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCgGGAGATCGAG	.	.	.
TALL081	RP11-726G1.1(7889),KLRB1(10387)	KLRB1	./.	-/.	12:9584164	12:9606353	intergenic	intron	deletion/read-through	downstream	upstream	1	4	1	35	41	low	.	.	mismatches(1)	.	.	.	.
TALL081	GIMAP6(38327),RP11-632K21.6(5858)	GIMAP2	./+	+/+	7:150670975	7:150687052	intergenic	splice-site	deletion/read-through	downstream	upstream	1	0	4	2	470	low	.	.	low_entropy(1)	CTCAGTTGGAGTGGCTCAAATGGCTCTAGATGGGGTGGGGGACAGATCAATGAGGGCCACATGTGGGAGCCTCTCGTTGTCAACTGTGTCCCTAGCTTCTTCTCCACGTTGCACCTGCTGAGCCTAGAATATCCCAAATCGCTTCTACCCTCCTTCACCAAG|GAACACCAATGGACCAAAATGAACACAGTCACTtGGGTAAGAAGGTGACTTCACGTGTGTGTGTGTGTGTGTGT...GTGTGTGTGTGTTTGGCTCTTCTGATGATGTTGGGGCAAAATAAACAAGGGTGAAGGATCTTATTCTAACTCCCACAGCTACCACCACCAGCAGCTGAAAATTGTGGGGTTTTGTTTTCTTTGTT	.	.	.
TALL081	LINC01059(20483),GRAMD1B(44743)	GRAMD1B	./+	+/+	11:123480893	11:123577367	intergenic	splice-site	deletion/read-through	downstream	upstream	0	4	0	18	20	low	.	.	mismappers(1),mismatches(1)	TCTCTTTGTCGCCCAGACTTGAGTGCAGTGGCATGATCTCGGCTCACTACACCCTCCACCTCCCAGGTTCAAGAGATTCTCCCGCCTCAGCCTCCCGAGTAGCTGGGATTACAG...CAACAGAGCAGTCAGCAGAGCAGCCACGATGATGATTCTAGCAGGTTCCTGAGTCCTCGAGCGCGGGAAGAAAG|CACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGCCGGAGCGGCGGCAAGAATTCCAAG___AAAAGCCAGA	.	.	.
TALL081	RP11-98J23.2(58190),CDH12P2(6147)	SERF1B	./+	+/+	5:69979057	5:70026407	intergenic	splice-site	deletion/read-through	downstream	upstream	3	0	1	199	84	low	.	.	mismappers(1)	ATTTTTTTCAACAGGAATGTCTAGAGACATTATTCCTGTTTTGCCACTGTATTTTTGGTGAATGTGTAGTAAGTAACTGGCCTCTTTAGTATCACAAAGCTGGATGAAGAAAATGTGGTACATATACACCATGAAATACTATGCCGCCACAAAAAGGAAATGAGATCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATCCTTAGCAAAGTAACGCAGGAACAGAAAACCAAACACCACATGTTGTCTCTTAGAAGTGGGAGCTGAACG|GTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAA	.	.	.
TALL081	KCNQ4	RP5-1066H13.4	+/+	+/+	1:40840396	1:40876467	3'UTR	splice-site	deletion/read-through	downstream	upstream	3	1	0	45	6	low	.	.	mismatches(1)	CCCAGCCTCTGCCCCAACATGCCCTCTGCATGTGACCGTCATGCCCTGGATGGAGCCACTCCTGGCTCACCCCACCTGCACTGCACTGTCCCCAGAGAGCCACCCCTCCACCCACTCAGAGACAGCTGTGGAGAGGGCCAGGAGAATGGGATTACCCTATGACCAAGGAGACATGGGAAGAAGCCCTCCTTCCTTCCACGATCGAGGTTCCGCCATCAACTCGGTTCTCGGATATGCAA|GACCTGGAACATGGCAGACAGTCAGTAAGTGCTGGGTCACCTTCAGGCCACCCTGGACCATCCAGCTaTAGCTAAGCCATCAGCTGACTACAACTACATGAATGAACCCAGGAGATAAGAGCAGAAaAATCACCTAGtTGAGCC	.	.	.
TALL081	ZNF577	AC006272.1	-/-	-/-	19:51855832	19:51843315	3'UTR	exon	deletion/read-through	upstream	downstream	2	2	0	24	15	low	.	.	mismappers(2),mismatches(1)	AGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTCCAG___GGTATTCATTCAGGAGAAGGACCCTACAGATGGAGGGAATGCAGGAAAGCTAAGAAGAATCACACCTCATTGC...GAACCACAGTAGCCATGAAGACCATCAGCCTTCAACCACCACCCTTGTATCAGAGGAGACAAATAAGCTTGGAAATCCTCAAAAAGCCTCATCCTCAGAGCAAT|GGTTTATCATCATTCAATGATGTGGCTGTTGACTTCACCTGGGAGGAGTGGAATCTATTAGACCCTGTTCAGAAGAACCTCTACCAGGATGTGATGTTGGAAAATTACAACAACCTAGTGTCACTGG___GTTGTCAAGCTACCAAGCCAGAAGCAATATTCCAGTTGGGGAAAGAAGAACAAGGAATAGTAGAGAGAGAATTCCCAAGTTGGTGCAGTCCAG___CACGATGGAATTTAGTCGCC	.	.	.
TALL081	MTAP	RP11-408N14.1(14031),DMRTA1(218138)	+/+	./+	9:21802777	9:22228703	CDS	intergenic	deletion	downstream	upstream	0	0	3	129	26	low	.	.	.	CGCACTGCTCACTCCCGCGCAGTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGT...|...AGAAGAATTCACTCTGCTGAACGTGATAAGAAACAGAACTCAGAAAGAGGGACAtCTAGAGGATGAAAACAGAAGATACAATTTCAGTTGCTGATAATGTG	.	.	.
TALL081	CLN5	MYCBP2-AS1	+/+	+/+	13:76996127	13:77075518	splice-site	exon	deletion/read-through	downstream	upstream	2	1	0	51	12	low	.	.	.	TTCCCCATCTCCGACCTGAAATGGATGCCCCTTTCTGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGATGATGTTCACTGGAAGGAAAATGGGACATTAGTTCAAGTAGCAACTATATCAG|ATCTAACTCCAGTCCAATATCCCCTAAGAAGCCTTCTCTGACCACTCCAGGGCACAATGATCTCAAG___GTTCAGCATCTCCAGAGATGAGCTTTCCAAATACCTGATGAAGATATGCATGTGAGAAGGAATTAATGACAGGCATTAACACTATATTG	out-of-frame	PHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATIS|dltpvqyplrsll*	.
TALL081	FRDAP(110396),RNA5SP388(7129)	NRXN3	./.	+/.	14:78170674	14:78242391	intergenic	5'UTR	deletion/read-through	downstream	upstream	2	1	0	3	5	low	.	.	.	.	.	.	.
TALL081	SLC1A4	AC007386.4	+/+	+/+	2:65016673	2:65037403	splice-site	splice-site	deletion/read-through	downstream	upstream	0	1	2	58	2	low	.	.	.	GCTACCTGCTCCAG|ACCCAGAGATGCTGGGTGGCCTCTGGCCGCTGACCTCCTGATTGCCATCCCTCCCCCATCACCACAACTCAATAATCAAACCAGCAACTGAGGAGTTACTCTACACTCTTCTTTACCTCCCAACCACCCCGTTCCAGCTGCTAATCATCATGCTGATT	out-of-frame	ATCSr|prdagwplaadlliaipppspqlnnqtsn*	.
TALL081	CTSC	RAB38	-/-	-/-	11:88300525	11:88175241	intron	CDS	deletion/read-through	upstream	downstream	0	0	3	300	11	low	.	.	.	GTCGAAAAATCCCAAG___GCCCAAACCTGCACCACTGACTGCTGAAATACAGCAAAAGATTTTGCATTTGCCAACATCTTGGGACTGGAGAAATGTTCATGGTATCAATTTTGTCAGTCCTGTTCGAAACCAAGGTcAA...|...CAAG___GTCAAGAAAGATTTGGAAACATGACGAGGGTCTATTACCGAGAAGCTATGGGTGCATTTATTGTCTTCGATGTCACCAGGCCAGCCACATTTGAAGCAGT	.	.	.
TALL081	EIF3CL	NPIPB6	-/-	-/-	16:28379729	16:28353061	3'UTR	splice-site	deletion/read-through	upstream	downstream	1	1	0	25	38	low	.	.	mismappers(3)	GCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCAGTCACTAAAG|GTTATCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGTTACACATTTAACATTCTCTT	out-of-frame	RGGYRQQQSQTAY*alhsvsrlghptlks*ttpqslk|VINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRRYTFNIL	.
TALL081	ADCY3	DTNB	-/.	-/.	2:24892533	2:25405190	intron	intron	deletion	downstream	upstream	0	0	2	1	1	low	.	.	mismappers(1)	.	.	.	.
TALL081	METTL15	RP11-22P4.1	+/+	+/+	11:28296931	11:28352090	splice-site	5'UTR	deletion/read-through	downstream	upstream	1	1	0	47	3	low	.	.	low_entropy(1),mismappers(1)	CAAGATAGAGATTTTGAAACTATGGCTAAATTACATATTCCAGTAATGGTGGATGAAGTTGTTCATTGTTTGTCACCACAAAAAGGACAG___T...AAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GTTGCACTGGAGAATCTAAACTCTTTTGGAGATGTCCCAAGGCCTAACCTGCACCTCTTCACAGCATAG___GCATTTTCCCCCAATAAACTACTTATTCTCCCAACTTCATCTCAGTGTCAGCTTCCTAGAAGACCCAAACAACGTGGATGGCCTTCAAAGAAAAATGGAG___GAAAACAAACAACCTGATTTTAAAATGGCCAAAGGACCT	out-of-frame	ACQENRFSNCSGTQHLPHHQNPAACQHRCr|lhwri*	.
TALL081	DUSP11	METTL4	-/.	-/.	2:73762744	18:2570085	CDS	intron	translocation	downstream	upstream	0	0	2	119	3	low	.	.	.	.	.	.	.
TALL081	RP11-380M21.2	ZBTB7C	-/-	-/-	18:47853424	18:48111312	exon	intron	deletion/read-through	downstream	upstream	0	0	2	12	0	low	.	.	mismappers(1),mismatches(4)	...CTCCTTGACgTTGACAATCGAGTAGTACTCCCGaTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTgCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACcGCTACACGACCgGG|...GGATTAGGGGAAT	.	.	.
TALL081	ZNF461(348),CTD-3234P18.6(901)	ZNF567	./+	+/+	19:36667201	19:36712386	intergenic	splice-site	deletion/read-through	downstream	upstream	1	1	0	12	54	low	.	.	.	CTTCGGGTTCCGCTGAGGACGGATTTCGGAATAGGCACAGTGGCTGCCCCGAACCCCTCAAGGCGGCCTCCGCGGGCTGTGGCTGAAGATAATTTTCGGCGGGCGCGGACTAACCCGGCTTCCCTTTGTGGAGTTGTGGTGAGAAAGGTGTTTTGTTGTGCGCGTGTCCGAAGGTGACTCCGGAGGAGAAGGTGGATATGAACTGACG|GGATCAGTGTCTTTCAATGATGTGACTGTGGACTTCACTCAGGAGGAGTGGCAGCACCTGGATCATGCTCAGAAGACTCTATATATGGATGTGATGTTGGAA	.	.	.
TALL081	CABYRP1(44898),CACNA2D3(28856)	CACNA2D3	./+	+/+	3:54093691	3:54123513	intergenic	splice-site	deletion/read-through	downstream	upstream	1	0	1	8	2	low	.	.	.	CAGATTCTTCCCTGGAGCTTTCAG___GGGACATAAGACAGTGAACATGAAGAGAGCTGATCTTTCTACAAGAGCTGAATGCTTTGGAAACACTGAACAGTAATCACTGAAAAATGCCATGGAATTAG|GGTGAAGCTCTGGGCCTCGGCTTTTGGTGGGGAGATAAAATCCATTGCTG	.	.	.
TALL081	TPCN2	RP11-554A11.7(26341),RP11-554A11.8(11793)	+/+	./+	11:69081499	11:69135435	splice-site	intergenic	deletion/read-through	downstream	upstream	1	1	0	51	4	low	.	.	.	TGGAGATGCTGCTCAAGGTCTTTGCCCTGGGCCTGCGAGGGTACCTGTCCTACCCCAGCAACGTGTTTGACGGGCTCCTCACCGTTGTCCTGCTG___GTTTTGGAGATCTCAACTCTGGCTGTGTAC...CGCATGCTGAACATGCTCATCGTGTTCCGCTTCCTGCGTATCATCCCCAGCATGAAG|TGACCCAGGAGGCTCTCACGTGGAGTCCCCAGAACAGCAT?AACTCCTCACGATGCTCCTGACGGTGGTGGACAGACTCTCCATGCCCCGATGAAGTTGTGAGTCACATACATCCC	out-of-frame	RMLNMLIVFRFLRIIPSMK|*	.
TALL081	SLC25A3	ANKS1B	+/.	-/.	12:98597292	12:98948954	intron	intron	deletion/read-through/5'-5'	downstream	upstream	0	0	2	685	1	low	.	.	mismappers(1),mismatches(1)	.	.	.	.
TALL081	NMNAT1	NMNAT1(11210),RBP7(495)	+/+	./+	1:9975775	1:9996711	splice-site	intergenic	deletion/read-through	downstream	upstream	2	0	0	33	4	low	.	.	duplicates(1)	CTCTCCTGTTGGTGATGCCTACAAGAAGAAAGGACTCATTCCTGCCTATCACCGGGTCATCATGGCAGAACTTGCTACCAAGAATTCTAAATGGGTGGAAGTTGATACATGGGAAAGTCTTCAGAAGGAGTGGAAAGAGACTCTGAAGGTGCTAAG|CTGCCAGCTCATGACCAGGAGGTAACAAGCAGGAATAAAAGGC	out-of-frame	SPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLs|cqlmtrr*	.
TALL081	KCNJ12	PDLIM1P2(3684),RP11-728E14.3(7390)	+/+	./+	17:21419513	17:21449123	3'UTR	intergenic	deletion/read-through	downstream	upstream	1	1	0	15	3	low	.	.	.	AACCCCACAGTCCCCGACCCTCTGCCCTGATTATGCACGTCTGCTCCTGAGTGGAGCTTGTGTTCCAGGATGAGACATCTGGAG|GAAGCTTCCTGACACAGCCTGCACCCCAGTGGACTTCCCAAAGCAAGTTGAGTCTGACTTCGCACCCCTGACATCAGAATCATCTGACTTCTGG	.	.	.
TALL081	SCAI	ZNF337	-/-	-/-	9:125142633	20:25686466	splice-site	splice-site	translocation	upstream	downstream	2	0	0	63	83	low	.	.	.	CTCAGCTTCCCGAGCGAGCCCTGCGGCCGCCGGAGCAGCTCCCGCGGCGGAGCAGGAGCCGGATGGTCAGAGGAGCCCGGCAGCCCCAGCAGCCGCGGAGTCGCCTGGCCCCCAG___ACTGACTGGCACAGTGGAGAAACCGCCTCGAAAACGGAGAAGCAG|ATTGGCCATCTGCAAGCTTCCCTTCTC	out-of-frame	MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSr|laicklpf	.
TALL081	NOA1	DUSP11	-/-	-/-	4:56973148	2:73773923	splice-site	splice-site	translocation	upstream	downstream	0	2	0	265	148	low	.	.	.	ATGACACCCCTGGAATTACAAAAGAAAATTGT|GATTTGCCAGAAACTGTTCCTTACTTAAAAATTTTTACAGTTGGACATCAAGTGCCTGATGATGAGACTATTTTTAAATTCAAACACGCTGTTAATGGGTTTTTGAAAGAAAATAAAGATAATG___ATAAACTTATTGGTGTCCACTGTACCCATGGTTTAAACAGGACTGGCTACCTCATTTGCAGGTAAGTTGCCAACCCCAGAGGCAGA	in-frame	DTPGITKENC|DLPETVPYLKIFTVGHQVPDDETIFKFKHAVNGFLKENKDNDKLIGVHCTHGLNRTGYLICr*	.
TALL081	BTRC	TM9SF3	+/+	-/-	10:101430452	10:96576829	splice-site	splice-site	inversion	downstream	downstream	2	0	0	22	109	low	.	.	.	CGAGGCGGTGCTGCAAGAGAAGGCACTCAAGTTTATG___TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG|TATCAAGATAAAGAGGAAGTTGTCTTATGGATGAATACTGTTGGGCCCTACCATAATCGTCAAGAAACATATAAGTACTTTTCACTTCCATTCTGTGTG	in-frame	EAVLQEKALKFMCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQ|YQDKEEVVLWMNTVGPYHNRQETYKYFSLPFC	.
TALL081	MSI2	ANKFN1	+/+	+/+	17:57529724	17:56440327	splice-site	splice-site	duplication	downstream	upstream	2	0	0	536	2	low	.	.	.	AGGAAGAGTAGCTGATATCTGGGCGTTTTTCATAGAAATTCCATGATGGATGTTTTCCCCAGGATGCACTGCCAGTGTCCCAAAGAGAGACTTATCAGTTAAACCTGCCTGGCTCCAGAGGAGTCG...GGTGGAAGATGCAATGCTGATGTTTGATAAAACTACCAACAGGCACAGAG|TGGAATGGAGTATGTCCGAAGACTTTTCTCCTTTGGCTGGAGAAATCATCATGGATAATCTGCAGACTCTGAGAT	in-frame	VEDAMLMFDKTTNRHR|vEWSMSEDFSPLAGEIIMDNLQTLR	.
TALL081	PAN3	SIAH2	+/+	-/-	13:28139087	3:150742698	splice-site	splice-site	translocation	downstream	downstream	2	0	0	126	337	low	.	.	.	GGGGGAGCTGGGCCGCCCCCCGGGCCCAAGAAGCCGGACCTGGGGGACCCGGGGACCGGAGCCGCAGCCGGCGGAGGAGGCAGTAGCGGGGGACTCGATGGACCGCGGCTGGCAA|TATGCCACCACGGGCTGTTCCCTGACCCTGCACCATACGGAGAAACCAGAACATGAAGACATATGTGAATACC	out-of-frame	GGAGPPPGPKKPDLGDPGTGAAAGGGGSSGGLDGPRLA|ichhglfpdpapygetrt*	.
TALL081	WBP11	AEBP2	-/-	+/+	12:14803352	12:19462510	splice-site	splice-site	inversion	upstream	upstream	0	2	0	251	98	low	.	.	.	CTACCCGCTTCTCGTAGTCCTGGGAGCACAGCAGAAGT|CATAAGCAGTACTATAATGGATGTAGACAGCACAATTTCCAGTGGGCGTTCAACTCCAGCAATGATGAATGGACAAGGAAGCACTACTTCTTCAAGCAAAAATATTGCCTATAATTGTTGT	.	.	.
TALL081	ALDH1A2	GTF2A2	-/-	-/-	15:58013858	15:59650773	splice-site	splice-site	duplication	upstream	downstream	0	2	0	827	432	low	.	.	.	GGATGCTTCAGAAAGGGGACGTCTGTTGGATAAGCTTGCAGACTTGGTGGAACGGGACAGGGCAGTTCTTGCA|TCTCAACAGATCACCCCCCAACTTGCCCTTCAAGTTCTACTTCAGTTTGAT...GGAACAGAGTCAATTTCAGG___GGCTCTCTAAATACGTACAGATTCTGCGATAATGTGTGGACTTTTGTACTGAATGATGTTGAATTCAGAGAGGTGACAGAACTTATTAAAGTGGATAAAGTGAAA	in-frame	DASERGRLLDKLADLVERDRAVLA|SQQITPQLALQVLLQF	.
TALL081	MIDN	KLF16	+/+	-/-	19:1250529	19:1854760	splice-site	splice-site	inversion	downstream	downstream	1	0	1	155	40	low	.	.	.	CTCGCCATCCACAGCACCACGGGCACCCGCTACGACCTGGCCGTGCCGCCCGACGAGACGGTGGAGGGGCTGCGCAAGCGGTTGTCCCAGCGCCTCAAAGTGC?CAAGGAGCGCCTGGCTCTTCTCCACAAAGACAC|GGGAACGCCCTTTTGCTTGTGACTGGCAGGGCTGCGACAAGAAGTTCGCCCGCTCCGACGAGCTGGCCCGCCACCACCGGACGCACACGGGCGAGAAGCGCTTCTCCTGCCCTCTGTGCTCCAAGCGCTTCACCCGCAGTGACCACCTGGCCAAGCACGCC	out-of-frame	LAIHSTTGTRYDLAVPPDETVEGLRKRLSQRLKV?KERLALLHKDt|gtpfcl*	.
TALL081	DBT	DDX24	-/-	-/-	1:100206230	14:94053127	splice-site	splice-site	translocation	upstream	downstream	0	2	0	41	878	low	.	.	.	TGATAATGCCACCTGAAGTAGCCATTGGGGCCCTTGGATCAATTAAG|GAGCGAATCCGTTTAGCTCGACAGATTGAGAAATCTGAGTATCGGAACTTCCAGGCTTGCCTGCACAACTCTTGGATT...GCCCTGGAGATTGAGCTGGAAGAAGACATGTATAAGG___GAGGAAAAGCTGACCAGCAAGAAGAACGTCGGAGACAAAAGCAGATGAAGGTTCTGAAGAAGGAGCTGCGCCACCTGCTGTCCCAG	in-frame	IMPPEVAIGALGSIK|ERIRLARQIEKSEYRNFQACLHNSW	.
TALL081	POLR2A	UBE2G2	+/+	-/-	17:7500848	21:44773687	splice-site	splice-site	translocation	downstream	downstream	2	0	0	359	367	low	.	.	.	AGCAAATCTTCTCCCTCATCATACCTGGTCACATCAATTGTATCCGTACCCACAGCACCCATCCCGATGATGAAGACAGTGGCCCTTACAAGCACATCTCTCCTGGGGACACCAAG|TCTACCCTGATGGGAGAGTCTGCATTTCCATCCTCCACGCGCCAGGCGATGACCCCATGGGCTACGAGAGCAG	out-of-frame	QIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTK|stlmgesafpsstrqamtpwatra	.
TALL081	SLC12A7	CLPTM1L	-/-	-/-	5:1093533	5:1318453	splice-site	splice-site	duplication	upstream	downstream	1	0	1	187	285	low	.	.	duplicates(1)	GAACAAGAGAGCTTCTTTGAAGGGAAGAtCATGGCACTTTTCGAG___GAGGAGATGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACGAGGAGAGCCGGCGGCGGGAGGCCAAG|GCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGG...CCACACGGACTGAAGGCCGCCCGGGCTGCCGCCAGCCAAGTGCAACTTGAATTGTCAATGAGTATTTT[t]TGGAAGCATTTGGAGGAATTCCTAGACATTGCGTTTTCTGTGTTGCCAAAATCC	out-of-frame	EQESFFEGKiMALFEEEMDSNPMVSSLLNKLANYTNLSQGVVEHEEDEESRRREAK|alscg*	.
TALL081	SPNS3	SIRT1	+/+	+/+	17:4478637	10:67891402	splice-site	splice-site	translocation	downstream	upstream	0	2	0	384	116	low	.	.	.	GCCTTGGGGAGCTGCTTCTGTCCTGCAACTGGGCAGTGGTTGCCGACATCCTGCTG|GTGTCTGTTTCATGTGGAATACCTGACTTCAGGTCAAGGGATGGTATTTATGCTCGCCTTGCTGTAGACTTCCCAGATCTTCCAGATCCTCAAGCGATGTTTGATATTGAATATTTCAGAAAAG	in-frame	LGELLLSCNWAVVADILL|VSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYFRK	.
TALL081	PTP4A1	SYNCRIP	+/+	-/-	6:63572719	6:85641451	splice-site	splice-site	inversion	downstream	downstream	0	2	0	1101	449	low	.	.	.	CACCGCCACCGCCTGTGTCGCCGCCGCCTCGGGACCGGCTGTATGATTAGGCCACAATCTTCAATGAGTAAACATATTCCT|ATCTCTGGAAACATGGCTACAGAACATGTTAATGGAAATGGTACTGAAGAGCCaATGGATACTACTTCTGCAGTTATCCATTCAGAAAATTTTCAGACATTGCTTGATGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAG___GGCTAGTTGCACATAGTGATTTAGATGAAAGAGCTATTGAAGCTTTAAAAGAATTCAATGAAGA	.	.	.
TALL081	HIST2H2BE	HMGB2	-/-	-/-	1:149886264	4:173333214	splice-site	splice-site	translocation	upstream	downstream	2	0	0	954	5597	low	.	.	.	TCGAGCGCATCGCGGGAGAGGCTTCCCGCCTGGCGCACTACAACAAGCGCTCCACCATCACATCCCGCGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCGGTCACCAAGTACACCAGCTCCAA|ACCATGTCTGCAAAGGAGAAGTCGAA	out-of-frame	ERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSk|pclqrrsr	.
TALL081	YBX1	TARBP1	+/+	-/-	1:42696288	1:234406099	splice-site	splice-site	inversion	downstream	downstream	2	0	0	5461	624	low	.	.	.	CAGGAATGACACCAAGGAAGATGTATTTGTACACCAG___ACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAG|AAACTAATTCTGAAGCAAGCCCTTATAGTTGTGCTGCAGTGGTGT	in-frame	RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK|KLILKQALIVVLQW	.
TALL081	PSPC1	ZMYM5	-/-	-/-	13:19782386	13:19852190	splice-site	splice-site	duplication	upstream	downstream	2	0	0	480	320	low	.	.	.	GTTCACTATCGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAGACGTACACGCAGCGCTGCCGCCTCTTCGTGGGAAATCTGCCCACCGACATCACGGAGGAGGACTTCAAGAGGCTCTTCGAACGCTATGGCGAGCCCAGCGAAGTCTTCATCAACCGGGACCGTGGCTTCGGCTTCATCCGCTTG|GTTCATTGGCATGGAAAAATGTTCAGTGGGAG	out-of-frame	FTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRL|vhwhgkmfsg	.
TALL081	VWA8	MRPS31	-/-	-/-	13:41811225	13:40729601	splice-site	splice-site	deletion	upstream	downstream	1	0	0	68	225	low	.	.	.	CATTGCCTTGGCAGAACCCCCTGTTATTGGAAGCACAGCACACCAGTGGCTGGGACCAGAATTCTTAACCATGTTCTTTTTCCATTACATGAAACCACTTGTGAAAAGTGAAGAAATCCAAGTG...CGTCGGCTGTCACAGTATCCTAATGAAAATCTTCACAGTGCTGTTACTAAAGCCTGCCTTTCCAG|GTTTTGATGATGATGGTTCAGAATTTCATGAACATATATTTCTGGAGAAACACCTGGAG	out-of-frame	RRLSQYPNENLHSAVTKACLSr|f*	.
TALL081	ARFGEF1	CSPP1	-/-	+/+	8:67287955	8:67074243	splice-site	splice-site	inversion	upstream	upstream	0	1	0	73	76	low	.	.	.	GAGGAAAAGCCACAAGACATTGTACAGAACATTGTAGAAGAAATGGTGAACATTGTTGTTGGAG|AATCTGCAAAATGGCTGATAATTTGGATGAATTTATTGAAGAGCAAAAAGCCAGATTGGCCGAAGACAAAGCAGAGTTGGAAAGTGATCCACCTTACATGGAAATGAAG___GGAAAGTTGTCAGCGAAGCTTTCTGAAAACAGT	out-of-frame	EEKPQDIVQNIVEEMVNIVVG|esakwliiwmnllkskkpdwpktkqswkvihltwk*	.
TALL081	CDC14A	HIAT1	+/+	+/+	1:100442996	1:100058666	splice-site	splice-site	duplication	downstream	upstream	1	0	0	45	197	low	.	.	.	ATCTTTCTGTCTCCCAGGGCCAACCATTAGATGGTCCCGACTATATTG___GGATGCTTCCTTTGGAAATTGCACTTACAATCTCACCATTCTCGACTGTTTGCAGGGAATCAGAAAG___GGATTACAACATGGATTTTTTGACTTTGAGACATTTGATGTGGATGAATATGAACATTATGAG|GTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAG	in-frame	sfclpgptirwsrlyWDASFGNCTYNLTILDCLQGIRKGLQHGFFDFETFDVDEYEHYE|VLHETFPKHTFLMNGLIQ	.
TALL081	NAA15	ELF2	+/+	-/-	4:139361937	4:139060674	splice-site	splice-site	inversion	downstream	downstream	0	1	0	229	249	low	.	.	.	TTGAAGCTTCATGACAACCCCCTTACAGATGAGAATAAAGAACACGAAGCTGATACAG|ATACTACTACCAAAGGGGAATTCTTGCAAAGGTTGAAGGACAGAGGCTTGTATATCAGTTCAAGGAT...ACAAAAGTGAAACCTGTAATGAAGATTTAGCAGGAACTACTGATGAAAAATCATTAGAACGAGTGTCACTGTCTGCAGAAAGTCTCCTGAAAGCAGCATCCTCTGTTCGCAGTGGAAAAAATTC	out-of-frame	LKLHDNPLTDENKEHEADT|dtttkgeflqrlkdrglyissr	.
TALL081	FBXL20	AC108004.3	-/-	-/-	17:39402173	17:404592	splice-site	splice-site	deletion	upstream	downstream	0	1	0	10	113	low	.	.	.	AAATGGCTCCGAGCAGGGACCGCCTGCTGCACTTTGGGTTCAAGGCGACA|CCCACTACAGTTGTAGTTCTGGCACCATCGTGCCATCAAAGCCGCTTTACAACGTCACCACTGTCCTTCCAAGCCATCGAACGTCACCACTGTCCTTCCAAGCCATCGAACGTCACCACTGTCCTTCCAAGcCA	out-of-frame	MAPSRDRLLHFGFKAT|pttvvvlapschqsrfttsplsfqaierhhcpskpsnvttvlps	.
TALL081	FBXL20	AC108004.3	-/-	-/-	17:39402173	17:404625	splice-site	splice-site	deletion	upstream	downstream	0	1	0	10	96	low	.	.	.	CGAGCAGGGACCGCCTGCTGCACTTTGGGTTCAAGGCGACA|TCTCTGTCTCCTCACTGACCCATCaCTTCTCAGCCCACTACAGTTGTAGTTCTGGCACCATCGTGCCATCAAAGCCGCTTTACAACGTCACCACTGTCCTTCCAAGCCATCGAACGTCACCACTGTCCTTCCAAGCCATCGAACGTCACCACTGTCCTTCCAAG	out-of-frame	SRDRLLHFGFKAT|slsph*	.
TALL081	SNHG5	CCAR1	-/-	+/+	6:85678136	10:68786136	splice-site	splice-site	translocation	upstream	upstream	1	0	0	4701	524	low	.	.	.	CGAAGGCCTTCCGTCGGCGTTGTTTTAAAATGGGAAGCCTCGACCCTGTATTGAAACTGAGCTGTTCGAAGGCGGCGTTGTGTGCAATTCGGATTAATGAAGGGGAAGGGTTTTGTGTGGAAA...TTCCCGCAGGAACAATGGCGCTGTCTTCAGTGGCACAGTGGAGCAGCTCTGAAGATGCAAAG|ATAGGGATGAGGAAGAAATGACCAAACGAGATGACAAAAGAGATATCAACAGATACTGCAAG	.	.	.
TALL081	MIR181A1HG	MCM7	-/-	-/-	1:198900411	7:100099203	splice-site	splice-site	translocation	upstream	downstream	1	0	0	141	1993	low	.	.	.	CTGAGGCCTCCTGAGCCATGTGAAACT___AGATCCTGGCAAAATTACCAACAATCAATGATGGAAACTGAAGGGAGATTGATTTAAATCTTCAATGACAGTTGTACAGAAGTTGAAGAAACACGTCATCTTTCCAAAGAAGAGTGAGTAGCTTGGTTGGTGGTACCCTAAAATTAGGGCATGATTAAG|TGAGCTGTATTTTCAAGGCCCTAGCAGCAACAAGCCTCGTGTGATCCGGGAAGTGCGGG	.	.	.
TALL081	ZFP36L1	DPF3	-/-	-/-	14:68792882	14:72753371	splice-site	splice-site	duplication	upstream	downstream	1	0	0	1198	228	low	.	.	.	CCGGGAACTGGCGTGTGGGACTCCAGACAGGAGAGGCTGCGCCTTCCCCGCACCGGGACCTTCGCGACACACCAGATCCTCGCCCCTGGCTCGCGCGAACGCACAGGATGACCACCACCCTCGTGTCTGCCACCATCTTCGACTTGAGCGAAGTTTTATGCAAG|GCCTTGCCCCGGGCCAGCTGTATACATACCCTGCCCGCTGCTGGCGCAAGAAG	out-of-frame	MTTTLVSATIFDLSEVLCK|alprascihtlpaagar	.
TALL081	DPF3	ZFP36L1	-/-	-/-	14:72894057	14:68790492	splice-site	splice-site	deletion	upstream	downstream	0	1	0	71	1206	low	.	.	.	CTGTCATTCACAACCCCCTGAAAGC|GGTAACAAGATGCTCAACTATAGTGCTCCCAGTGCAGGGGGTTGCCTGCTGGACAGAAAGGCAGTGGGCACCCCTGCTGGTGGGGGCTTCCCTCGGAGGCACTCAGTCACCCTGCCCAGCTCCAAGTTCCACCAGAACCAGCTCCTCAGCAGCCTCAAG	out-of-frame	VIHNPLKa|vtrcstivlpvqgvacwterqwapllvgaslggtqspcpapsstrtsssaas	.
TALL081	SLC25A38	CSRNP1	+/+	-/-	3:39383793	3:39146722	splice-site	splice-site	inversion	downstream	downstream	0	1	0	359	611	low	.	.	.	CAATGATTCAGAACTCACGTCCGTCGCTGCTGCAACCCCAAGATGTCGGAGACACGGTGGAAACGCTTATG|GCTGTCTGTCCCCAGACCCCAGAGCACGTCCaGCACCACCATGACTGGGCTGTT...CCCCGCTGCCAGGGCTTCACCAGTGTGCCCAGCCGTGGTGGCTGTACTCTGGGTATGGCCCTTCGCCACAGTGCTTGCCGTCGCTTCTCTTTGGCTGAGTTTGCGCAGGAGCAAGCCCGTGC	out-of-frame	MIQNSRPSLLQPQDVGDTVETLM|avcpqtpehvqhhhdwa	.
TALL081	SPRY1	H2AFZ	+/+	-/-	4:123396932	4:99948523	splice-site	splice-site	inversion	downstream	downstream	0	1	0	1839	4622	low	.	.	.	GCTTTGCAGAGTGATTATCAGCACAGTTCCCTGCCCTGGATAAGGAACAGCTACAGTCGCTGTTAAATGTGCCTGAAAAGCAATTTGCAATCTTTGCATTAG|GTGTCATTCCACACATCCACA...AACAGCTGTCCAGTGTTGGTGATTCCAGTGGACTGTATCTCTGTGAAAAACACAATTTTGCCTTTTTGTAATTCTATTTGAGCAAGTTGGAAGTTTAATTAGCTTTCCAACCAACCAAATTTCTG	.	.	.
TALL081	SPRY1	H2AFZ	+/+	-/-	4:123396932	4:99948940	splice-site	splice-site	inversion	downstream	downstream	0	1	0	1839	4043	low	.	.	duplicates(1)	CAGCTACAGTCGCTGTTAAATGTGCCTGAAAAGCAATTTGCAATCTTTGCATTAG|GTACTTGAACTGGCAGGAAATGCATCAAAAGACTTAAAGGTAAAGCGTATTACCCCTCGTCACTTGCAACTTGCTATTCGTGGAGATGAAGAATTGGATTCTCTCATCAAGGCTACAATTGCTGGTGGTG___GTGTCATTCCACACATCCACAAATCTCTGATTGGGAAGAAAGGACAACAGAAGACT	.	.	.
TALL081	UBQLN1	HNRNPK	-/-	-/-	9:83679775	9:83973399	splice-site	splice-site	duplication	upstream	downstream	0	1	0	576	4386	low	.	.	.	GGCCAATCCACAAATGCAGCAGTTGATACAGAGAAATCCAGAAATTAGTCATATGTTGAATAATCCAGATATAATGAGACAA|TACCAACACTATAAAGGAAGTGACTTTGACTGCGAGTTGAGGCTGTTGATTCATCAGAGTCTAGCAGGAGGAATTATTGGGGTCAAAGGTGCTAAAATCAAAGAACTTCGAGAG___AACACTCAAACCACCATCAAGCTTTT	in-frame	ANPQMQQLIQRNPEISHMLNNPDIMRQ|YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL	.
TALL081	UBQLN1	HNRNPK	-/-	-/-	9:83707500	9:83978452	splice-site	splice-site	duplication	upstream	downstream	0	1	0	483	2916	low	.	.	.	CATGAAAGTCACCGTGAAGACCCCGAAGGAAAAGGAGGAATTCGCCGTGCCCGAGAATAGCTCCGTCCAGCAG|GCTACTGCAGCACTGGGGTGTCAGTTGTTGGTCCGACCCAGAACGCTTCAGT...AGATATGGAAGAGGAACAAGCATTTAAAAGATCTAGAAACACTGATGAGATGGTTGAATTACGCATTCTGCTTCAGAGCAAG___AATGCTGGGGCAGTGATTGGAAAAGGAGGCAAGAATATTAAG	out-of-frame	MKVTVKTPKEKEEFAVPENSSVQQ|ataalgcqllvrprtlq	.
TALL081	EIF3H	RAD21	-/-	-/-	8:116755666	8:116847691	splice-site	splice-site	duplication	upstream	downstream	0	1	0	1905	1528	low	.	.	.	GGGAGATTCAGCCGTGAAGCAAGTGCAGATAGATGGCCTT|CGTGCTCTTGCTAAAACTGGAGCTGAATCTATCAGTTTGCTTGAGTTATGTCGAAATACGAACAGAAAACAAGCTGCCGCAAAGTTCTACAGCTTCTTGGTTCTTAAAAAGCAGCAAGCTATTGAGCTGACACAGGAAGAA	in-frame	GDSAVKQVQIDGL|RALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQE	.
TALL081	CTB-35F21.1	CXXC5	+/+	+/+	5:139721967	5:139680364	splice-site	splice-site	duplication	downstream	upstream	1	0	0	61	471	low	.	.	.	CGGGCGCAGGCGGGAGGTCGCATCTGCAGCTTTGGCGCAATGAATCAGGCGCGGCCGCCGCCGCCGCCGCCGCCGCCGAGCGCGTCTGGCATCCGGAGTCTCCCGGGATCGAAAATAATTTGGG...AGCATCACGTAAGAAGTGCTTTTCGCCTCCCGCCATGATTCTGAGGTCTCCCCAGCCATGTGGAACT|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCG	.	.	.
