Mining and Curating Transformation Products for Suspect Screening

Code by Adelene Lai based on work by Emma Schymanski and the PubChem Team.

This Jupyter Notebook serves as additional Supplementary Information to:

Occurrence and Distribution of Pharmaceuticals and their Transformation Products in Luxembourgish Surface Waters

Randolph R. Singh1†, Adelene Lai1,2, Jessy Krier1, Todor Kondic1, Philippe Diderich3, Emma L. Schymanski1

1 Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 6 avenue du Swing, 4367, Belvaux, Luxembourg

2 Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller University, Lessing Strasse 8, 07743, Jena, Germany

3 Water Management Agency, Ministry of the Environment, Climate and Sustainable Development, Luxembourg

Current affiliation: IFREMER (Institut Français de Recherche pour l’Exploitation de la Mer), Laboratoire Biogéochimie des Contaminants Organiques, Rue de l’Ile d’Yeu, BP 21105, Nantes Cedex 3, 44311, France

Transformation Products (TPs) of chemical compounds (e.g., drugs) are of interest for Suspect Screening. In the above work, TP information was obtained from two sources:

  1. PubChem
  2. the literature (in our case, a paper by Anliker et al., 2020)

PubChem contains openly accessible information on Transformation Products (compound names and their transformation pathways) in its Transformation tables. This TP information was mined, merged with TPs from Anliker et al., and curated to form a final suspect list.

In [2]:
#load relevant libraries
library(RChemMass,quietly=TRUE)
library(plyr,quietly=TRUE)
library(dplyr,quietly=TRUE)
library(readr,quietly=TRUE)
library(ggplot2,quietly=TRUE)
library(rcdk,quietly=TRUE)
library(magick,quietly=TRUE)
library(purrr,quietly=TRUE)
library(gridExtra,quietly=TRUE)
source("extractAnnotations.R")

Luxembourg's "Positive Drugs" List

Drugs in Luxembourg are approved for local sale by the Caisse Nationale Sante (CNS). A list is published annually here: https://cns.public.lu/en/legislations/textes-coordonnes/liste-positive.html


The 2019 list was obtained and drug compound names were manually extracted from the PDF (n=1074). This list was curated to remove compounds which:

  • had masses beyond our mass range of interest (<1000 Da) e.g. vaccines
  • were not electrospray ionisation (ESI) amenable such as medical resins, inorganic compounds, salts etc.
  • and were 'redundant' compounds which were specifications of others e.g. specific doses, mixtures of drugs (e.g. HIV medication) etc.

258 compounds were removed from this master list, leaving 816 parent compounds of interest whose TPs will be mined from PubChem. This list of 816 parent compounds is the starting point for mining TPs.

In [31]:
image_read("cns_screenshot.png")
# A tibble: 1 x 7
  format width height colorspace matte filesize density
  <chr>  <int>  <int> <chr>      <lgl>    <int> <chr>  
1 PNG     1188    828 sRGB       TRUE    115101 72x72  

Transformation Products in PubChem

Information on TPs in PubChem exist for certain compounds in the section "Transformation Products" within each compound page. These TP info originally come from 3 lists (as of 09/2020) from the Norman Network Suspect List Exchange: S60, S66, and S68.

https://zenodo.org/communities/norman-sle/?page=1&size=20
https://zenodo.org/record/3766352
https://zenodo.org/record/3829088
https://zenodo.org/record/3827487

TP Mining can be performed using Structured Data Queries (SDQs) of PubChem. extractAnnotations.R code (originally written by E. Schymanski and adapted by A. Lai) takes PubChem Compound Identifier (CID) as query input and gives the CIDs of TPs as output. Therefore, CIDs for these 816 parent compounds must be obtained.

Note that the archived version of the Transformations table within PubChem at the time this code was run is available in /transformations_table_pubchem_20190918/CID__norman_s60.csv.

Mining Transformation Products in PubChem: Obtaining CIDs

The list of 816 parent compounds (compound names) was converted to CIDs using PubChem's Identifier Exchange Service https://pubchem.ncbi.nlm.nih.gov/idexchange/idexchange.cgi using the following settings:

  • Input ID List: Synonym
  • Operator Type: Same CID
  • Output IDs: CIDs
  • Output Method: Two column file showing each input-output correspondence.

The resulting output is read-in below.

In [2]:
#read in CIDs list (output from IDExchange)
idex_cns_cids <- read.table("input/1234827526505398810_816_synonym_cns_input_cids.txt",sep="\t")
colnames(idex_cns_cids) <- c("input_name_CNS","cid")
head(idex_cns_cids)
str(idex_cns_cids)
A data.frame: 6 × 2
input_name_CNScid
<fct><int>
abacavir 441300
abiraterone 132971
acamprosate 71158
acarbose 41774
acarbose 444254
acarbose 4432690
'data.frame':	1268 obs. of  2 variables:
 $ input_name_CNS: Factor w/ 816 levels "abacavir","abiraterone",..: 1 2 3 4 4 4 4 4 4 4 ...
 $ cid           : int  441300 132971 71158 41774 444254 4432690 441184 18397995 129010024 122172882 ...
In [52]:
#how many names and cids are unique?
sapply(idex_cns_cids, function(x) length(unique(x)))
input_name_CNS
816
cid
1259
In [53]:
#are there any NAs (compound names for which no CID could be found via ID Exchange Service)
no_cids_avail <- idex_cns_cids[is.na(idex_cns_cids$cid),]
no_cids_avail
A data.frame: 6 × 2
input_name_CNScid
<fct><int>
287cisplatin NA
325dabigatran etexilate NA
327dalbavancin NA
353dichlorobenzyl alcoholNA
711magaldrate NA
850oxaliplatin NA
In [54]:
#remove these 6 NAs and deal with them later
query_idex_cns_cids <- idex_cns_cids[!is.na(idex_cns_cids$cid),] 
query_idex_cns_cids <- tibble::rownames_to_column(query_idex_cns_cids, "idx") #add idx column
In [55]:
dim(query_idex_cns_cids)
length(unique(query_idex_cns_cids$input_name_CNS))
length(unique(query_idex_cns_cids$cid))
  1. 1262
  2. 3
810
1258

Removing 6 rows of CID == NA, 1262 rows (1258 unique CIDs) are left, corresponding to 810 unique compounds.

Evidently, there is a one-to-many relationship between parent compounds and cids. Furthermore there are 1262-1258=4 sets of duplicate cids:

In [56]:
query_idex_cns_cids[duplicated(query_idex_cns_cids$cid)|duplicated(query_idex_cns_cids$cid,fromLast=TRUE),]
A data.frame: 8 × 3
idxinput_name_CNScid
<chr><fct><int>
177177calcium folinate 135403647
184184calcium levofolinate135403647
411415esomeprazole 4594
662666levonorgestrel 13109
663667levothyroxine 5819
665669levothyroxine sodium 5819
816821norgestrel 13109
839844omeprazole 4594

When querying PubChem for TPs, these duplicates will not produce any adverse results since query output for a given duplicated cid will simply 'rewrite' itself as a csv. Therefore these duplicates are harmless and also since this list of duplicates is small, let's leave them in for now.


Let's see examples of input_name_CNS with many CIDs:

In [61]:
multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids <- query_idex_cns_cids  %>% dplyr::group_by(input_name_CNS) %>% dplyr::summarise(n = n())

p1 <- ggplot(multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids,aes(n)) + 
geom_bar() + 
scale_y_continuous(breaks=seq(0, 800, 100)) + 
labs(title = "How Many CNS Compounds Have >1 CID? ", x="No. CIDs", y="No. Compounds") +
theme(plot.title = element_text(size=20,hjust=0.5)) + theme(text = element_text(size=16)) 

morethan1_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids <- multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids[multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids$n>1,]
p2 <- ggplot(morethan1_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids,aes(n)) + geom_bar() + scale_y_continuous(breaks=seq(0, 12, 2)) + 
labs(x="No. CIDs", y="No. Compounds") + #title = "How Many CNS Compounds Have >1 CID? ",
theme(plot.title = element_text(size=20,hjust=0.5)) + theme(text = element_text(size=16))
In [40]:
g <- ggplotGrob(p2)
p1+ annotation_custom(
    grob = g,
    xmin = 5,
    xmax = 20,
    ymin = 200,
    ymax = 750
  )
In [62]:
morethan1_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids[order(-morethan1_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids$n),]
A tibble: 75 × 2
input_name_CNSn
<fct><int>
amphotericin B 19
pimecrolimus 19
rifampicin 19
temsirolimus 19
alfacalcidol 17
rifaximin 17
hydroxocobalamin 15
scopolamine 14
paclitaxel 13
iloprost 12
caspofungin 11
rifabutin 11
saxagliptin 10
vincristine 10
aztreonam 9
cefepime 9
cefotaxime 9
ceftaroline fosamil 9
clindamycin 9
fosinopril 9
gadoteridol 9
norgestrel 9
acarbose 8
cefuroxime 8
octreotide 8
vinblastine 8
eplerenone 7
linaclotide 7
lymecycline 7
vinorelbine 7
ipratropium bromide 5
methylnaltrexone bromide 5
silver sulfadiazine 5
somatostatin 5
asenapine 4
calcium levofolinate 4
ceftriaxone 4
desmopressin 4
epoprostenol 4
exenatide 4
fosfomycin 4
norelgestromin 4
reboxetine 4
vildagliptin 4
clomifene 3
dosulepin 3
esomeprazole 3
etomidate 3
flupentixol 3
formoterol 3
liraglutide 3
lithium succinate 3
mivacurium chloride 3
sugammadex 3
thiamine 3
varenicline 3
benzathine benzylpenicillin2
carboprost 2
solifenacin 2
trospium 2
In [63]:
morethan1_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids$input_name_CNS
  1. acarbose
  2. alfacalcidol
  3. amphotericin B
  4. asenapine
  5. aztreonam
  6. benzathine benzylpenicillin
  7. calcium folinate
  8. calcium levofolinate
  9. carboprost
  10. caspofungin
  11. cefepime
  12. cefotaxime
  13. ceftaroline fosamil
  14. ceftazidime
  15. ceftriaxone
  16. cefuroxime
  17. ciclosporin
  18. clindamycin
  19. clomifene
  20. desmopressin
  21. dosulepin
  22. eplerenone
  23. epoprostenol
  24. esomeprazole
  25. etomidate
  26. exenatide
  27. flupentixol
  28. fluticasone
  29. fluvastatin
  30. formoterol
  31. fosfomycin
  32. fosinopril
  33. gadoteridol
  34. hydroxocobalamin
  35. icatibant
  36. iloprost
  37. ipratropium bromide
  38. itraconazole
  39. ketoconazole
  40. lactulose
  41. lanreotide
  42. levothyroxine sodium
  43. linaclotide
  44. liraglutide
  45. lithium succinate
  46. lymecycline
  47. mefloquine
  48. methylnaltrexone bromide
  49. mivacurium chloride
  50. nebivolol
  51. norelgestromin
  52. norgestrel
  53. octreotide
  54. paclitaxel
  55. pimecrolimus
  56. reboxetine
  57. rifabutin
  58. rifampicin
  59. rifaximin
  60. rosuvastatin
  61. saxagliptin
  62. scopolamine
  63. silver sulfadiazine
  64. solifenacin
  65. somatostatin
  66. strontium ranelate
  67. sugammadex
  68. temsirolimus
  69. thiamine
  70. trospium
  71. varenicline
  72. vildagliptin
  73. vinblastine
  74. vincristine
  75. vinorelbine
Levels:
  1. 'abacavir'
  2. 'abiraterone'
  3. 'acamprosate'
  4. 'acarbose'
  5. 'acebutolol'
  6. 'aceclofenac'
  7. 'acemetacin'
  8. 'acenocoumarol'
  9. 'acetazolamide'
  10. 'acetylcholine'
  11. 'acetylcysteine'
  12. 'acetylsalicylic acid'
  13. 'aciclovir'
  14. 'acipimox'
  15. 'acitretin'
  16. 'aclidinium bromide'
  17. 'adapalene'
  18. 'adefovir dipivoxil'
  19. 'adenosine'
  20. 'afatinib'
  21. 'agomelatine'
  22. 'alectinib'
  23. 'alendronic acid'
  24. 'alfacalcidol'
  25. 'alfentanil'
  26. 'alfuzosin'
  27. 'allopurinol'
  28. 'almotriptan'
  29. 'alogliptin'
  30. 'alprazolam'
  31. 'alprostadil'
  32. 'altizide'
  33. 'alverine'
  34. 'amantadine'
  35. 'ambrisentan'
  36. 'ambroxol'
  37. 'amcinonide'
  38. 'aminolevulinic acid'
  39. 'amiodarone'
  40. 'amisulpride'
  41. 'amitriptyline'
  42. 'amlodipine'
  43. 'amorolfine'
  44. 'amoxicillin'
  45. 'amphotericin B'
  46. 'anagrelide'
  47. 'anastrozole'
  48. 'anethole trithione'
  49. 'anidulafungin'
  50. 'apixaban'
  51. 'apraclonidine'
  52. 'aprepitant'
  53. 'aripiprazole'
  54. 'articaine'
  55. 'asenapine'
  56. 'atazanavir'
  57. 'atenolol'
  58. 'atomoxetine'
  59. 'atorvastatin'
  60. 'atosiban'
  61. 'atovaquone'
  62. 'atracurium'
  63. 'atropine'
  64. 'avanafil'
  65. 'axitinib'
  66. 'azacitidine'
  67. 'azathioprine'
  68. 'azelaic acid'
  69. 'azelastine'
  70. 'azithromycin'
  71. 'aztreonam'
  72. 'baclofen'
  73. 'bamipine'
  74. 'baricitinib'
  75. 'beclometasone'
  76. 'bedaquiline'
  77. 'benazepril'
  78. 'bendamustine'
  79. 'benperidol'
  80. 'benzathine benzylpenicillin'
  81. 'benzocaine'
  82. 'benzoyl peroxide'
  83. 'benzylpenicillin'
  84. 'betacarotene'
  85. 'betahistine'
  86. 'betamethasone'
  87. 'betaxolol'
  88. 'bethanechol'
  89. 'bexarotene'
  90. 'bezafibrate'
  91. 'bicalutamide'
  92. 'bifonazole'
  93. 'bilastine'
  94. 'bimatoprost'
  95. 'biperiden'
  96. 'biphenylol'
  97. 'bisacodyl'
  98. 'bisoprolol'
  99. 'bisoxatin'
  100. 'bortezomib'
  101. 'bosentan'
  102. 'brimonidine'
  103. 'brinzolamide'
  104. 'brivaracetam'
  105. 'brivudine'
  106. 'bromazepam'
  107. 'bromhexine'
  108. 'bromocriptine'
  109. 'bromperidol'
  110. 'brotizolam'
  111. 'budesonide'
  112. 'bumetanide'
  113. 'bupivacaine'
  114. 'buprenorphine'
  115. 'bupropion'
  116. 'busulfan'
  117. 'butamirate'
  118. 'butoconazole'
  119. 'cabergoline'
  120. 'cabozantinib'
  121. 'caffeine'
  122. 'calcipotriol'
  123. 'calcitriol'
  124. 'calcium folinate'
  125. 'calcium levofolinate'
  126. 'cangrelor'
  127. 'cannabinoids'
  128. 'capecitabine'
  129. 'capsaicin'
  130. 'captopril'
  131. 'carbachol'
  132. 'carbamazepine'
  133. 'carbetocin'
  134. 'carbocisteine'
  135. 'carboplatin'
  136. 'carboprost'
  137. 'carfilzomib'
  138. 'cariprazine'
  139. 'carteolol'
  140. 'carvedilol'
  141. 'caspofungin'
  142. 'cefadroxil'
  143. 'cefalexin'
  144. 'cefazolin'
  145. 'cefepime'
  146. 'cefotaxime'
  147. 'ceftaroline fosamil'
  148. 'ceftazidime'
  149. 'ceftriaxone'
  150. 'cefuroxime'
  151. 'celecoxib'
  152. 'celiprolol'
  153. 'ceritinib'
  154. 'cetirizine'
  155. 'cetrorelix'
  156. 'chlorambucil'
  157. 'chloramphenicol'
  158. 'chlorhexidine'
  159. 'chlormadinone'
  160. 'chloroxylenol'
  161. 'chlorphenamine'
  162. 'chlorphenoxamine'
  163. 'chlortetracycline'
  164. 'ciclopirox'
  165. 'ciclosporin'
  166. 'cilastatin'
  167. 'cilazapril'
  168. 'cinacalcet'
  169. 'cinnarizine'
  170. 'ciprofibrate'
  171. 'ciprofloxacin'
  172. 'cisatracurium'
  173. 'cisplatin'
  174. 'citalopram'
  175. 'cladribine'
  176. 'clarithromycin'
  177. 'clevidipine'
  178. 'clindamycin'
  179. 'clobazam'
  180. 'clobetasol'
  181. 'clodronic acid'
  182. 'clomifene'
  183. 'clomipramine'
  184. 'clonazepam'
  185. 'clonidine'
  186. 'cloperastine'
  187. 'clopidogrel'
  188. 'clotiazepam'
  189. 'clotrimazole'
  190. 'cloxazolam'
  191. 'clozapine'
  192. 'cobicistat'
  193. 'cobimetinib'
  194. 'codeine'
  195. 'colchicine'
  196. 'colecalciferol'
  197. 'crizotinib'
  198. 'cromoglicic acid'
  199. 'cyclopentolate'
  200. 'cyproterone'
  201. 'dabigatran etexilate'
  202. 'dabrafenib'
  203. 'dalbavancin'
  204. 'dapagliflozin'
  205. 'dapoxetine'
  206. 'darifenacin'
  207. 'darunavir'
  208. 'dasatinib'
  209. 'daunorubicin'
  210. 'decitabine'
  211. 'deferasirox'
  212. 'deferiprone'
  213. 'deferoxamine'
  214. 'deflazacort'
  215. 'dequalinium'
  216. 'desflurane'
  217. 'desloratadine'
  218. 'desmopressin'
  219. 'desogestrel'
  220. 'desonide'
  221. 'dexamethasone'
  222. 'dexpanthenol'
  223. 'dexrazoxane'
  224. 'dextromethorphan'
  225. 'diazepam'
  226. 'dichlorobenzyl alcohol'
  227. 'diclofenac'
  228. 'dienogest'
  229. 'digoxin'
  230. 'diltiazem'
  231. 'dimethyl fumarate'
  232. 'dimetindene'
  233. 'dinoprostone'
  234. 'diphenhydramine'
  235. 'disopyramide'
  236. 'disulfiram'
  237. 'dobutamine'
  238. 'docetaxel'
  239. 'docosanol'
  240. 'docusate sodium'
  241. 'domperidone'
  242. 'donepezil'
  243. 'dosulepin'
  244. 'doxycycline'
  245. 'droperidol'
  246. 'drospirenone'
  247. 'duloxetine'
  248. 'dutasteride'
  249. 'dydrogesterone'
  250. 'ebastine'
  251. 'econazole'
  252. 'efavirenz'
  253. 'eletriptan'
  254. 'eltrombopag'
  255. 'emedastine'
  256. 'emtricitabine'
  257. 'enalapril'
  258. 'entacapone'
  259. 'entecavir'
  260. 'enzalutamide'
  261. 'ephedrine'
  262. 'epinastine'
  263. 'epinephrine'
  264. 'epirubicin'
  265. 'eplerenone'
  266. 'epoprostenol'
  267. 'eprosartan'
  268. 'eptifibatide'
  269. 'erdosteine'
  270. 'eribulin'
  271. 'erlotinib'
  272. 'ertapenem'
  273. 'erythromycin'
  274. 'escitalopram'
  275. 'esmolol'
  276. 'esomeprazole'
  277. 'estradiol'
  278. 'estramustine'
  279. 'estriol'
  280. 'etamsylate'
  281. 'etelcalcetide'
  282. 'ethambutol'
  283. 'ethanol'
  284. 'ethinylestradiol'
  285. 'ethosuximide'
  286. 'ethylmorphine'
  287. 'etilefrine'
  288. 'etofenamate'
  289. 'etomidate'
  290. 'etonogestrel'
  291. 'etoricoxib'
  292. 'etravirine'
  293. 'everolimus'
  294. 'exemestane'
  295. 'exenatide'
  296. 'ezetimibe'
  297. 'fampridine'
  298. 'febuxostat'
  299. 'felbamate'
  300. 'felbinac'
  301. 'felodipine'
  302. 'fenofibrate'
  303. 'fenoterol'
  304. 'fentanyl'
  305. 'fenticonazole'
  306. 'fesoterodine'
  307. 'finasteride'
  308. 'fingolimod'
  309. 'flavoxate'
  310. 'flecainide'
  311. 'flucloxacillin'
  312. 'fluconazole'
  313. 'fludarabine'
  314. 'fludrocortisone'
  315. 'flunarizine'
  316. 'flunitrazepam'
  317. 'fluorescein'
  318. 'fluorodopa'
  319. 'fluorometholone'
  320. 'fluorouracil'
  321. 'fluoxetine'
  322. 'flupentixol'
  323. 'fluprednidene'
  324. 'flurbiprofen'
  325. 'fluspirilene'
  326. 'flutamide'
  327. 'flutemetamol'
  328. 'fluticasone'
  329. 'fluvastatin'
  330. 'fluvoxamine'
  331. 'folic acid'
  332. 'fondaparinux'
  333. 'formoterol'
  334. 'fosamprenavir'
  335. 'foscarnet'
  336. 'fosfomycin'
  337. 'fosinopril'
  338. 'framycetin'
  339. 'frovatriptan'
  340. 'fulvestrant'
  341. 'furosemide'
  342. 'fusidic acid'
  343. 'gabapentin'
  344. 'gadoteridol'
  345. 'galantamine'
  346. 'ganciclovir'
  347. 'gefitinib'
  348. 'gemcitabine'
  349. 'gestodene'
  350. 'glatiramer acetate'
  351. 'glibenclamide'
  352. 'gliclazide'
  353. 'glimepiride'
  354. 'glipizide'
  355. 'gliquidone'
  356. 'glucosamine'
  357. 'glyceryl trinitrate'
  358. 'glycopyrronium bromide'
  359. 'goserelin'
  360. 'guaifenesin'
  361. 'guanfacine'
  362. 'haloperidol'
  363. 'hexamidine'
  364. 'hexetidine'
  365. 'hydrochlorothiazide'
  366. 'hydrocortisone'
  367. 'hydrocortisone butyrate'
  368. 'hydromorphone'
  369. 'hydroxocobalamin'
  370. 'hydroxycarbamide'
  371. 'hydroxychloroquine'
  372. 'hydroxyzine'
  373. 'ibrutinib'
  374. 'ibuprofen'
  375. 'icatibant'
  376. 'idarubicin'
  377. 'idebenone'
  378. 'ifosfamide'
  379. 'iloprost'
  380. 'imatinib'
  381. 'imipenem'
  382. 'imiquimod'
  383. 'indacaterol'
  384. 'indapamide'
  385. 'indometacin'
  386. 'iobitridol'
  387. 'iodixanol'
  388. 'iohexol'
  389. 'iomeprol'
  390. 'iopromide'
  391. 'ioversol'
  392. 'ioxitalamic acid'
  393. 'ipratropium bromide'
  394. 'irbesartan'
  395. 'irinotecan'
  396. 'isavuconazole'
  397. 'isoconazole'
  398. 'isoniazid'
  399. 'isoprenaline'
  400. 'isosorbide dinitrate'
  401. 'isothipendyl'
  402. 'isotretinoin'
  403. 'itraconazole'
  404. 'ivabradine'
  405. 'ivacaftor'
  406. 'ketamine'
  407. 'ketoconazole'
  408. 'ketoprofen'
  409. 'ketorolac'
  410. 'ketotifen'
  411. 'labetalol'
  412. 'lacosamide'
  413. 'lactitol'
  414. 'lactulose'
  415. 'lamivudine'
  416. 'lamotrigine'
  417. 'lanreotide'
  418. 'lansoprazole'
  419. 'lapatinib'
  420. 'latanoprost'
  421. 'leflunomide'
  422. 'lenalidomide'
  423. 'lenvatinib'
  424. 'lercanidipine'
  425. 'letrozole'
  426. 'leuprorelin'
  427. 'levetiracetam'
  428. 'levobunolol'
  429. 'levobupivacaine'
  430. 'levocabastine'
  431. 'levocarnitine'
  432. 'levocetirizine'
  433. 'levodopa'
  434. 'levodropropizine'
  435. 'levofloxacin'
  436. 'levomepromazine'
  437. 'levonorgestrel'
  438. 'levothyroxine'
  439. 'levothyroxine sodium'
  440. 'lidocaine'
  441. 'linaclotide'
  442. 'lincomycin'
  443. 'linezolid'
  444. 'liothyronine'
  445. 'liraglutide'
  446. 'lisinopril'
  447. 'lithium succinate'
  448. 'lodoxamide'
  449. 'loperamide'
  450. 'lopinavir'
  451. 'loprazolam'
  452. 'loratadine'
  453. 'lorazepam'
  454. 'lormetazepam'
  455. 'losartan'
  456. 'lumacaftor'
  457. 'lymecycline'
  458. 'lynestrenol'
  459. 'macitentan'
  460. 'macrogol'
  461. 'magaldrate'
  462. 'malathion'
  463. 'mannitol'
  464. 'maraviroc'
  465. 'mebendazole'
  466. 'mebeverine'
  467. 'meclozine'
  468. 'medroxyprogesterone'
  469. 'mefloquine'
  470. 'megestrol'
  471. 'melatonin'
  472. 'melphalan'
  473. 'memantine'
  474. 'mepivacaine'
  475. 'mercaptamine'
  476. 'mercaptopurine'
  477. 'meropenem'
  478. 'mesalazine'
  479. 'mesna'
  480. 'mesterolone'
  481. 'metamizole sodium'
  482. 'metformin'
  483. 'methadone'
  484. 'methotrexate'
  485. 'methyl aminolevulinate'
  486. 'methylergometrine'
  487. 'methylnaltrexone bromide'
  488. 'methylphenidate'
  489. 'methylprednisolone'
  490. 'methylprednisolone aceponate'
  491. 'metildigoxin'
  492. 'metoclopramide'
  493. 'metoprolol'
  494. 'metronidazole'
  495. 'mianserin'
  496. 'miconazole'
  497. 'midazolam'
  498. 'midostaurin'
  499. 'mifepristone'
  500. 'miglustat'
  501. 'milnacipran'
  502. 'milrinone'
  503. 'minocycline'
  504. 'minoxidil'
  505. 'mirtazapine'
  506. 'misoprostol'
  507. 'mitoxantrone'
  508. 'mivacurium chloride'
  509. 'mizolastine'
  510. 'moclobemide'
  511. 'modafinil'
  512. 'molsidomine'
  513. 'mometasone'
  514. 'montelukast'
  515. 'morphine'
  516. 'moxifloxacin'
  517. 'moxonidine'
  518. 'mupirocin'
  519. 'mycophenolic acid'
  520. 'nabumetone'
  521. 'naftidrofuryl'
  522. 'nalmefene'
  523. 'naloxone'
  524. 'naphazoline'
  525. 'naproxen'
  526. 'naratriptan'
  527. 'nebivolol'
  528. 'nefopam'
  529. 'nelarabine'
  530. 'neostigmine'
  531. 'nepafenac'
  532. 'nevirapine'
  533. 'nicardipine'
  534. 'niclosamide'
  535. 'nicotinamide'
  536. 'nicotine'
  537. 'nifedipine'
  538. 'niflumic acid'
  539. 'nifuroxazide'
  540. 'nifurtoinol'
  541. 'nilotinib'
  542. 'nimodipine'
  543. 'nitrazepam'
  544. 'nitrofural'
  545. 'nitrofurantoin'
  546. 'nitrous oxide'
  547. 'nordazepam'
  548. 'norelgestromin'
  549. 'norepinephrine'
  550. 'norethisterone'
  551. 'norfloxacin'
  552. 'norgestrel'
  553. 'obeticholic acid'
  554. 'octenidine'
  555. 'octreotide'
  556. 'ofloxacin'
  557. 'olanzapine'
  558. 'olmesartan medoxomil'
  559. 'olopatadine'
  560. 'omeprazole'
  561. 'ondansetron'
  562. 'orlistat'
  563. 'ornidazole'
  564. 'oseltamivir'
  565. 'otilonium bromide'
  566. 'oxaliplatin'
  567. 'oxazepam'
  568. 'oxybuprocaine'
  569. 'oxybutynin'
  570. 'oxycodone'
  571. 'oxymetazoline'
  572. 'paclitaxel'
  573. 'paliperidone'
  574. 'palonosetron'
  575. 'pamidronic acid'
  576. 'panobinostat'
  577. 'pantoprazole'
  578. 'paracetamol'
  579. 'parecoxib'
  580. 'paromomycin'
  581. 'pazopanib'
  582. 'pemetrexed'
  583. 'penciclovir'
  584. 'penfluridol'
  585. 'pentamidine isethionate'
  586. 'pentoxifylline'
  587. 'perampanel'
  588. 'perindopril'
  589. 'permethrin'
  590. 'phenelzine'
  591. 'phenobarbital'
  592. 'phenoxymethylpenicillin'
  593. 'phenprocoumon'
  594. 'phenylephrine'
  595. 'phenytoin'
  596. 'phytomenadione'
  597. 'pilocarpine'
  598. 'pimecrolimus'
  599. 'pimozide'
  600. 'pioglitazone'
  601. 'pipamperone'
  602. 'piperacillin'
  603. 'piracetam'
  604. 'pirfenidone'
  605. 'piribedil'
  606. 'piritramide'
  607. 'piroxicam'
  608. 'plerixafor'
  609. 'polidocanol'
  610. 'pomalidomide'
  611. 'ponatinib'
  612. 'posaconazole'
  613. 'pramipexole'
  614. 'pranoprofen'
  615. 'pravastatin'
  616. 'prazepam'
  617. 'prazosin'
  618. 'prednisolone'
  619. 'pregabalin'
  620. 'prilocaine'
  621. 'primidone'
  622. 'procaine'
  623. 'procyclidine'
  624. 'progesterone'
  625. 'proguanil'
  626. 'propafenone'
  627. 'propanol'
  628. 'propofol'
  629. 'propranolol'
  630. 'propylthiouracil'
  631. 'prothipendyl'
  632. 'prucalopride'
  633. 'pseudoephedrine'
  634. 'pyrazinamide'
  635. 'pyridostigmine'
  636. 'pyridoxine'
  637. 'pyrimethamine'
  638. 'quetiapine'
  639. 'quinapril'
  640. 'rabeprazole'
  641. 'racecadotril'
  642. 'raloxifene'
  643. 'raltegravir'
  644. 'raltitrexed'
  645. 'ramipril'
  646. 'ranitidine'
  647. 'rasagiline'
  648. 'reboxetine'
  649. 'regadenoson'
  650. 'regorafenib'
  651. 'remifentanil'
  652. 'repaglinide'
  653. 'retigabine'
  654. 'ribavirin'
  655. 'rifabutin'
  656. 'rifampicin'
  657. 'rifamycin'
  658. 'rifaximin'
  659. 'rilmenidine'
  660. 'rilpivirine'
  661. 'riluzole'
  662. 'risedronic acid'
  663. 'risperidone'
  664. 'ritonavir'
  665. 'rivaroxaban'
  666. 'rivastigmine'
  667. 'rizatriptan'
  668. 'rocuronium bromide'
  669. 'roflumilast'
  670. 'ropinirole'
  671. 'ropivacaine'
  672. 'rosuvastatin'
  673. 'rufinamide'
  674. 'rupatadine'
  675. 'rutoside'
  676. 'ruxolitinib'
  677. 'sacubitril'
  678. 'safinamide'
  679. 'salbutamol'
  680. 'salmeterol'
  681. 'sapropterin'
  682. 'saquinavir'
  683. 'saxagliptin'
  684. 'scopolamine'
  685. 'secnidazole'
  686. 'selegiline'
  687. 'sertraline'
  688. 'sevoflurane'
  689. 'sildenafil'
  690. 'silodosin'
  691. 'silver sulfadiazine'
  692. 'simvastatin'
  693. 'sirolimus'
  694. 'sitagliptin'
  695. 'sodium lauryl sulfoacetate'
  696. 'sodium oxybate'
  697. 'solifenacin'
  698. 'somatorelin'
  699. 'somatostatin'
  700. 'sorafenib'
  701. 'sorbitol'
  702. 'sotalol'
  703. 'spironolactone'
  704. 'strontium ranelate'
  705. 'sufentanil'
  706. 'sugammadex'
  707. 'sulconazole'
  708. 'sulfamethoxazole'
  709. 'sulfasalazine'
  710. 'sulfur hexafluoride'
  711. 'sulpiride'
  712. 'sumatriptan'
  713. 'sunitinib'
  714. 'suxamethonium'
  715. 'tacalcitol'
  716. 'tacrolimus'
  717. 'tadalafil'
  718. 'tafamidis'
  719. 'tamoxifen'
  720. 'tamsulosin'
  721. 'tapentadol'
  722. 'tegafur'
  723. 'telmisartan'
  724. 'temocillin'
  725. 'temozolomide'
  726. 'temsirolimus'
  727. 'tenofovir disoproxil'
  728. 'tenoxicam'
  729. 'terazosin'
  730. 'terbinafine'
  731. 'teriflunomide'
  732. 'terlipressin'
  733. 'testosterone'
  734. 'tetracaine'
  735. 'tetracycline'
  736. 'tetryzoline'
  737. 'thalidomide'
  738. 'theophylline'
  739. 'thiamazole'
  740. 'thiamine'
  741. 'thiamphenicol'
  742. 'thiotepa'
  743. 'tiagabine'
  744. 'tianeptine'
  745. 'tiapride'
  746. 'tibolone'
  747. 'ticagrelor'
  748. 'ticlopidine'
  749. 'tigecycline'
  750. 'timolol'
  751. 'tinidazole'
  752. 'tiotropium bromide'
  753. 'tipranavir'
  754. 'tirofiban'
  755. 'tizanidine'
  756. 'tobramycin'
  757. 'tofacitinib'
  758. 'tolcapone'
  759. 'tolterodine'
  760. 'tolvaptan'
  761. 'topiramate'
  762. 'topotecan'
  763. 'torasemide'
  764. 'tosylchloramide sodium'
  765. 'trabectedin'
  766. 'tramadol'
  767. 'tramazoline'
  768. 'tranexamic acid'
  769. 'travoprost'
  770. 'trazodone'
  771. 'tretinoin'
  772. 'triamcinolone'
  773. 'triazolam'
  774. 'trifluridine'
  775. 'trihexyphenidyl'
  776. 'trimetazidine'
  777. 'trimethoprim'
  778. 'triptorelin'
  779. 'tropicamide'
  780. 'tropisetron'
  781. 'trospium'
  782. 'troxerutin'
  783. 'umeclidinium bromide'
  784. 'urapidil'
  785. 'ursodeoxycholic acid'
  786. 'valaciclovir'
  787. 'valganciclovir'
  788. 'valproic acid'
  789. 'valsartan'
  790. 'vancomycin'
  791. 'vardenafil'
  792. 'varenicline'
  793. 'vemurafenib'
  794. 'venlafaxine'
  795. 'verapamil'
  796. 'vernakalant'
  797. 'vigabatrin'
  798. 'vilanterol'
  799. 'vildagliptin'
  800. 'vinblastine'
  801. 'vincristine'
  802. 'vindesine'
  803. 'vinorelbine'
  804. 'vismodegib'
  805. 'voriconazole'
  806. 'warfarin'
  807. 'xylometazoline'
  808. 'yohimbine'
  809. 'zidovudine'
  810. 'zofenopril'
  811. 'zoledronic acid'
  812. 'zolmitriptan'
  813. 'zolpidem'
  814. 'zonisamide'
  815. 'zopiclone'
  816. 'zuclopenthixol'
In [64]:
multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids[multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids$input_name_CNS=="nicotine",]
A tibble: 1 × 2
input_name_CNSn
<fct><int>
nicotine1
In [65]:
multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids[multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids$input_name_CNS=="ketoconazole",]
A tibble: 1 × 2
input_name_CNSn
<fct><int>
ketoconazole6
In [66]:
query_idex_cns_cids[query_idex_cns_cids$input_name_CNS=="ketoconazole",]
A data.frame: 6 × 3
idxinput_name_CNScid
<chr><fct><int>
617621ketoconazole 456201
618622ketoconazole 47576
619623ketoconazole 3823
620624ketoconazole 5702077
621625ketoconazole16757695
622626ketoconazole73951506
In [67]:
multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids[multiple_cid_per_name_query_idex_cns_cidsquery_idex_cns_cids$input_name_CNS=="tramadol",]
#interesting given https://pubchem.ncbi.nlm.nih.gov/compound/63015 and https://pubchem.ncbi.nlm.nih.gov/compound/33741 (33741 has the TPs)
A tibble: 1 × 2
input_name_CNSn
<fct><int>
tramadol1

Query PubChem for Transformation Products

PubChem has a throttling system which limits the number of queries at a given time: https://pubchemdocs.ncbi.nlm.nih.gov/dynamic-request-throttling Therefore, the list of 1262 CIDs must be split into chunks and these chunks run with a pause in between to avoid TimeOuts.

In [18]:
start_n <- 1 #rowname, must be changed acccordingly
chunks <- split(query_idex_cns_cids$idx[start_n:length(query_idex_cns_cids$idx)], ceiling(seq_along(query_idex_cns_cids$idx[start_n:length(query_idex_cns_cids$idx)])/10))
In [20]:
start.time <- Sys.time()
n_requests <- 0
n_tps <- list()

for (j in chunks){
  for (i in j){
    print(paste0("Running query idx ", i, " with cid ", query_idex_cns_cids[query_idex_cns_cids$idx==i,"cid"]))
    cids_successors <- getPcCand.trans(query_idex_cns_cids[query_idex_cns_cids$idx==i,"cid"]) 
    n_requests <- n_requests + 1
    print(paste0(n_requests," completed."))
    print(cids_successors)
    if (is.na(cids_successors)) {  
      n_tps[[i]] <- 0
    } else {
      n_tps[[i]] <- length(cids_successors)
    }
  }
  print("pause for 20 seconds ")
  Sys.sleep(20)
}

end.time <- Sys.time()
time.taken <- end.time - start.time
time.taken
[1] "Running query idx 1 with cid 441300"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"441300\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_441300_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"441300"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_441300_transformations.csv"}'”
[1] "Output directory created."
[1] "CID_441300_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_441300_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "1 completed."
[1] NA
[1] "Running query idx 2 with cid 132971"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"132971\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_132971_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"132971"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_132971_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_132971_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_132971_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "2 completed."
[1] NA
[1] "Running query idx 3 with cid 71158"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71158\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71158_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71158"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71158_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71158_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71158_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "3 completed."
[1] NA
[1] "Running query idx 4 with cid 41774"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"41774\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_41774_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"41774"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_41774_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_41774_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_41774_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "4 completed."
[1] NA
[1] "Running query idx 5 with cid 444254"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"444254\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_444254_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"444254"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_444254_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_444254_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_444254_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "5 completed."
[1] NA
[1] "Running query idx 6 with cid 4432690"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4432690\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4432690_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4432690"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4432690_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4432690_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4432690_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "6 completed."
[1] NA
[1] "Running query idx 7 with cid 441184"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"441184\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_441184_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"441184"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_441184_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_441184_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_441184_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "7 completed."
[1] NA
[1] "Running query idx 8 with cid 18397995"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"18397995\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_18397995_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"18397995"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_18397995_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_18397995_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_18397995_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "8 completed."
[1] NA
[1] "Running query idx 9 with cid 129010024"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129010024\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129010024_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129010024"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129010024_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129010024_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129010024_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "9 completed."
[1] NA
[1] "Running query idx 10 with cid 122172882"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"122172882\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_122172882_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"122172882"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_122172882_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_122172882_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_122172882_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "10 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 11 with cid 134694648"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134694648\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134694648_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134694648"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134694648_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134694648_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134694648_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "11 completed."
[1] NA
[1] "Running query idx 12 with cid 1978"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1978\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1978_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1978"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1978_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1978_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1978_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "12 completed."
[1] NA
[1] "Running query idx 13 with cid 71771"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71771\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71771_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71771"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71771_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71771_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71771_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "13 completed."
[1] NA
[1] "Running query idx 14 with cid 1981"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1981\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1981_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1981"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1981_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1981_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1981_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "14 completed."
[1] NA
[1] "Running query idx 15 with cid 54676537"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54676537\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54676537_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54676537"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54676537_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54676537_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54676537_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "15 completed."
[1] NA
[1] "Running query idx 16 with cid 1986"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1986\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1986_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1986"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1986_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1986_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1986_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "16 completed."
[1] NA
[1] "Running query idx 17 with cid 187"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"187\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_187_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"187"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_187_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_187_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_187_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "17 completed."
[1] NA
[1] "Running query idx 18 with cid 12035"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"12035\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_12035_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"12035"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_12035_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_12035_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_12035_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "18 completed."
[1] NA
[1] "Running query idx 19 with cid 2244"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2244\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2244_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2244"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2244_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2244_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2244_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "19 completed."
[1] NA
[1] "Running query idx 20 with cid 135398513"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398513\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398513_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398513"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398513_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398513_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398513_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "20 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 21 with cid 5310993"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5310993\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5310993_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5310993"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5310993_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5310993_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5310993_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "21 completed."
[1] NA
[1] "Running query idx 22 with cid 5284513"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284513\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284513_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284513"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284513_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284513_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284513_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "22 completed."
[1] NA
[1] "Running query idx 23 with cid 11519741"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11519741\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11519741_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11519741"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11519741_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11519741_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11519741_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "23 completed."
[1] NA
[1] "Running query idx 24 with cid 60164"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60164\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60164_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60164"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60164_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60164_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60164_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "24 completed."
[1] NA
[1] "Running query idx 25 with cid 60871"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60871\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60871_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60871"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60871_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60871_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60871_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "25 completed."
[1] NA
[1] "Running query idx 26 with cid 60961"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60961\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60961_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60961"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60961_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60961_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60961_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "26 completed."
[1] NA
[1] "Running query idx 27 with cid 10184653"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"10184653\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_10184653_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"10184653"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_10184653_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_10184653_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_10184653_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "27 completed."
[1] NA
[1] "Running query idx 28 with cid 82148"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"82148\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_82148_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"82148"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_82148_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_82148_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_82148_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "28 completed."
[1] NA
[1] "Running query idx 29 with cid 49806720"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"49806720\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_49806720_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"49806720"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_49806720_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_49806720_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_49806720_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "29 completed."
[1] NA
[1] "Running query idx 30 with cid 2088"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2088\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2088_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2088"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2088_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2088_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2088_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "30 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 31 with cid 5282181"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5282181\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5282181_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5282181"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5282181_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5282181_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5282181_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "31 completed."
[1] NA
[1] "Running query idx 32 with cid 5284515"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284515\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284515_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284515"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284515_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284515_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284515_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "32 completed."
[1] NA
[1] "Running query idx 33 with cid 5283718"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5283718\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5283718_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5283718"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5283718_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5283718_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5283718_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "33 completed."
[1] NA
[1] "Running query idx 34 with cid 2091"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2091\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2091_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2091"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2091_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2091_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2091_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "34 completed."
[1] NA
[1] "Running query idx 35 with cid 443990"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"443990\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_443990_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"443990"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_443990_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_443990_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_443990_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "35 completed."
[1] NA
[1] "Running query idx 36 with cid 57369692"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"57369692\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_57369692_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"57369692"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_57369692_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_57369692_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_57369692_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "36 completed."
[1] NA
[1] "Running query idx 37 with cid 46780105"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"46780105\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_46780105_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"46780105"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_46780105_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_46780105_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_46780105_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "37 completed."
[1] NA
[1] "Running query idx 38 with cid 42609152"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"42609152\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_42609152_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"42609152"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_42609152_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_42609152_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_42609152_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "38 completed."
[1] NA
[1] "Running query idx 39 with cid 6434322"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6434322\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6434322_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6434322"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6434322_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6434322_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6434322_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "39 completed."
[1] NA
[1] "Running query idx 40 with cid 5283723"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5283723\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5283723_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5283723"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5283723_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5283723_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5283723_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "40 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 41 with cid 145705856"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"145705856\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_145705856_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"145705856"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_145705856_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_145705856_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_145705856_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "41 completed."
[1] NA
[1] "Running query idx 42 with cid 129010229"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129010229\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129010229_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129010229"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129010229_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129010229_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129010229_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "42 completed."
[1] NA
[1] "Running query idx 43 with cid 45073394"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"45073394\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_45073394_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"45073394"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_45073394_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_45073394_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_45073394_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "43 completed."
[1] NA
[1] "Running query idx 44 with cid 134688803"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134688803\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134688803_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134688803"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134688803_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134688803_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134688803_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "44 completed."
[1] NA
[1] "Running query idx 45 with cid 134694392"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134694392\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134694392_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134694392"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134694392_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134694392_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134694392_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "45 completed."
[1] NA
[1] "Running query idx 46 with cid 135391135"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135391135\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135391135_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135391135"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135391135_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135391135_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135391135_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "46 completed."
[1] NA
[1] "Running query idx 47 with cid 145705666"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"145705666\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_145705666_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"145705666"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_145705666_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_145705666_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_145705666_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "47 completed."
[1] NA
[1] "Running query idx 48 with cid 51263"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"51263\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_51263_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"51263"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_51263_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_51263_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_51263_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "48 completed."
[1] NA
[1] "Running query idx 49 with cid 2092"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2092\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2092_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2092"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2092_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2092_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2092_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "49 completed."
[1] NA
[1] "Running query idx 50 with cid 135401907"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135401907\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135401907_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135401907"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135401907_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135401907_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135401907_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "50 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 51 with cid 123606"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"123606\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_123606_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"123606"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_123606_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_123606_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_123606_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "51 completed."
[1] NA
[1] "Running query idx 52 with cid 11450633"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11450633\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11450633_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11450633"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11450633_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11450633_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11450633_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "52 completed."
[1] NA
[1] "Running query idx 53 with cid 2118"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2118\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2118_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2118"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2118_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2118_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2118_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "53 completed."
[1] NA
[1] "Running query idx 54 with cid 5280723"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5280723\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5280723_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5280723"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5280723_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5280723_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5280723_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "54 completed."
[1] NA
[1] "Running query idx 55 with cid 2122"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2122\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2122_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2122"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2122_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2122_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2122_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "55 completed."
[1] NA
[1] "Running query idx 56 with cid 3678"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3678\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3678_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3678"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3678_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3678_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3678_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "56 completed."
[1] NA
[1] "Running query idx 57 with cid 2130"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2130\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2130_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2130"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2130_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2130_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2130_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "57 completed."
[1] NA
[1] "Running query idx 58 with cid 6918493"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918493\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918493_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918493"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918493_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918493_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918493_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "58 completed."
[1] NA
[1] "Running query idx 59 with cid 2132"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2132\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2132_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2132"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2132_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2132_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2132_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "59 completed."
[1] NA
[1] "Running query idx 60 with cid 443958"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"443958\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_443958_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"443958"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_443958_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_443958_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_443958_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "60 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 61 with cid 137"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "61 completed."
[1] NA
[1] "Running query idx 62 with cid 2157"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2157\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2157_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2157"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2157_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2157_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2157_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "62 completed."
[1] NA
[1] "Running query idx 63 with cid 2159"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2159\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2159_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2159_transformations: download successful"
$TP_File_Name
[1] "CID_2159_transformations.csv"

$TP_Unique_CIDs
[1] 71313372     2159

[1] "63 completed."
[1] 71313372     2159
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 64 with cid 2160"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2160\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2160_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2160_transformations: download successful"
$TP_File_Name
[1] "CID_2160_transformations.csv"

$TP_Unique_CIDs
[1] 4543

[1] "64 completed."
[1] 4543
[1] "Running query idx 65 with cid 2162"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2162\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2162_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2162"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2162_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2162_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2162_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "65 completed."
[1] NA
[1] "Running query idx 66 with cid 54260"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54260\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54260_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54260"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54260_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54260_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54260_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "66 completed."
[1] NA
[1] "Running query idx 67 with cid 33613"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"33613\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_33613_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"33613"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_33613_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_33613_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_33613_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "67 completed."
[1] NA
[1] "Running query idx 68 with cid 5280965"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5280965\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5280965_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5280965"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5280965_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5280965_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5280965_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "68 completed."
[1] NA
[1] "Running query idx 69 with cid 1972"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1972\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1972_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1972"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1972_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1972_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1972_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "69 completed."
[1] NA
[1] "Running query idx 70 with cid 5386092"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5386092\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5386092_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5386092"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5386092_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5386092_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5386092_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "70 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 71 with cid 14956"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"14956\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_14956_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"14956"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_14956_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_14956_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_14956_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "71 completed."
[1] NA
[1] "Running query idx 72 with cid 91827561"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"91827561\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_91827561_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"91827561"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_91827561_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_91827561_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_91827561_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "72 completed."
[1] NA
[1] "Running query idx 73 with cid 53486284"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53486284\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53486284_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53486284"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53486284_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53486284_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53486284_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "73 completed."
[1] NA
[1] "Running query idx 74 with cid 9919339"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9919339\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9919339_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9919339"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9919339_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9919339_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9919339_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "74 completed."
[1] NA
[1] "Running query idx 75 with cid 23863720"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23863720\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23863720_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23863720"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23863720_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23863720_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23863720_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "75 completed."
[1] NA
[1] "Running query idx 76 with cid 16667679"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16667679\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16667679_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16667679"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16667679_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16667679_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16667679_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "76 completed."
[1] NA
[1] "Running query idx 77 with cid 145705939"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"145705939\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_145705939_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"145705939"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_145705939_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_145705939_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_145705939_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "77 completed."
[1] NA
[1] "Running query idx 78 with cid 44399170"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44399170\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44399170_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44399170"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44399170_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44399170_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44399170_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "78 completed."
[1] NA
[1] "Running query idx 79 with cid 46783793"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"46783793\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_46783793_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"46783793"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_46783793_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_46783793_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_46783793_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "79 completed."
[1] NA
[1] "Running query idx 80 with cid 139246982"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"139246982\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_139246982_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"139246982"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_139246982_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_139246982_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_139246982_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "80 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 81 with cid 137704525"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137704525\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137704525_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137704525"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137704525_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137704525_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137704525_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "81 completed."
[1] NA
[1] "Running query idx 82 with cid 135391140"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135391140\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135391140_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135391140"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135391140_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135391140_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135391140_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "82 completed."
[1] NA
[1] "Running query idx 83 with cid 134719018"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134719018\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134719018_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134719018"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134719018_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134719018_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134719018_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "83 completed."
[1] NA
[1] "Running query idx 84 with cid 71311649"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71311649\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71311649_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71311649"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71311649_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71311649_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71311649_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "84 completed."
[1] NA
[1] "Running query idx 85 with cid 118705500"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"118705500\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_118705500_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"118705500"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_118705500_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_118705500_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_118705500_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "85 completed."
[1] NA
[1] "Running query idx 86 with cid 44421047"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44421047\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44421047_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44421047"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44421047_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44421047_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44421047_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "86 completed."
[1] NA
[1] "Running query idx 87 with cid 135409400"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135409400\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135409400_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135409400"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135409400_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135409400_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135409400_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "87 completed."
[1] NA
[1] "Running query idx 88 with cid 2187"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2187\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2187_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2187"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2187_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2187_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2187_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "88 completed."
[1] NA
[1] "Running query idx 89 with cid 2194"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2194\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2194_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2194"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2194_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2194_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2194_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "89 completed."
[1] NA
[1] "Running query idx 90 with cid 166548"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"166548\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_166548_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"166548"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_166548_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_166548_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_166548_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "90 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 91 with cid 10182969"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"10182969\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_10182969_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"10182969"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_10182969_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_10182969_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_10182969_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "91 completed."
[1] NA
[1] "Running query idx 92 with cid 2216"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2216\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2216_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2216"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2216_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2216_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2216_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "92 completed."
[1] NA
[1] "Running query idx 93 with cid 135413536"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135413536\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135413536_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135413536"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135413536_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135413536_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135413536_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "93 completed."
[1] NA
[1] "Running query idx 94 with cid 60795"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60795\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60795_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60795"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60795_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60795_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60795_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "94 completed."
[1] NA
[1] "Running query idx 95 with cid 32170"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"32170\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_32170_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"32170"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_32170_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_32170_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_32170_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "95 completed."
[1] NA
[1] "Running query idx 96 with cid 3036780"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3036780\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3036780_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3036780"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3036780_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3036780_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3036780_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "96 completed."
[1] NA
[1] "Running query idx 97 with cid 163091"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"163091\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_163091_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"163091"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_163091_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_163091_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_163091_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "97 completed."
[1] NA
[1] "Running query idx 98 with cid 9903970"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9903970\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9903970_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9903970"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9903970_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9903970_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9903970_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "98 completed."
[1] NA
[1] "Running query idx 99 with cid 46780481"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"46780481\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_46780481_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"46780481"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_46780481_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_46780481_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_46780481_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "99 completed."
[1] NA
[1] "Running query idx 100 with cid 148192"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"148192\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_148192_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"148192"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_148192_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_148192_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_148192_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "100 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 101 with cid 2249"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2249\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2249_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2249_transformations: download successful"
$TP_File_Name
[1] "CID_2249_transformations.csv"

$TP_Unique_CIDs
[1]    62936 14211540

[1] "101 completed."
[1]    62936 14211540
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 102 with cid 54841"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54841\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54841_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54841"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54841_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54841_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54841_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "102 completed."
[1] NA
[1] "Running query idx 103 with cid 60823"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60823\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60823_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60823"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60823_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60823_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60823_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "103 completed."
[1] NA
[1] "Running query idx 104 with cid 5311010"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311010\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311010_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311010"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311010_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311010_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311010_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "104 completed."
[1] NA
[1] "Running query idx 105 with cid 74989"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"74989\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_74989_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"74989"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_74989_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_74989_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_74989_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "105 completed."
[1] NA
[1] "Running query idx 106 with cid 47319"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"47319\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_47319_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"47319"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_47319_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_47319_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_47319_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "106 completed."
[1] NA
[1] "Running query idx 107 with cid 174174"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"174174\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_174174_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"174174"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_174174_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_174174_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_174174_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "107 completed."
[1] NA
[1] "Running query idx 108 with cid 9869929"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9869929\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9869929_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9869929"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9869929_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9869929_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9869929_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "108 completed."
[1] NA
[1] "Running query idx 109 with cid 6450551"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6450551\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6450551_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6450551"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6450551_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6450551_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6450551_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "109 completed."
[1] NA
[1] "Running query idx 110 with cid 9444"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9444\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9444_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9444"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9444_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9444_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9444_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "110 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 111 with cid 2265"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2265\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2265_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2265"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2265_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2265_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2265_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "111 completed."
[1] NA
[1] "Running query idx 112 with cid 2266"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2266\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2266_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2266"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2266_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2266_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2266_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "112 completed."
[1] NA
[1] "Running query idx 113 with cid 2267"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2267\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2267_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2267"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2267_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2267_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2267_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "113 completed."
[1] NA
[1] "Running query idx 114 with cid 447043"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"447043\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_447043_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"447043"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_447043_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_447043_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_447043_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "114 completed."
[1] NA
[1] "Running query idx 115 with cid 5742832"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5742832\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5742832_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5742832"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5742832_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5742832_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5742832_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "115 completed."
[1] NA
[1] "Running query idx 116 with cid 5459211"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5459211\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5459211_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5459211"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5459211_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5459211_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5459211_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "116 completed."
[1] NA
[1] "Running query idx 117 with cid 2274"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2274\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2274_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2274"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2274_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2274_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2274_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "117 completed."
[1] NA
[1] "Running query idx 118 with cid 5466987"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5466987\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5466987_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5466987"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5466987_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5466987_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5466987_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "118 completed."
[1] NA
[1] "Running query idx 119 with cid 54117"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54117\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54117_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54117"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54117_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54117_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54117_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "119 completed."
[1] NA
[1] "Running query idx 120 with cid 56842327"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"56842327\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_56842327_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"56842327"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_56842327_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_56842327_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_56842327_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "120 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 121 with cid 5353428"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5353428\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5353428_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5353428"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5353428_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5353428_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5353428_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "121 completed."
[1] NA
[1] "Running query idx 122 with cid 22842006"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"22842006\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_22842006_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"22842006"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_22842006_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_22842006_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_22842006_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "122 completed."
[1] NA
[1] "Running query idx 123 with cid 86741379"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"86741379\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_86741379_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"86741379"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_86741379_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_86741379_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_86741379_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "123 completed."
[1] NA
[1] "Running query idx 124 with cid 2284"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2284\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2284_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2284"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2284_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2284_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2284_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "124 completed."
[1] NA
[1] "Running query idx 125 with cid 72075"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"72075\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_72075_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"72075"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_72075_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_72075_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_72075_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "125 completed."
[1] NA
[1] "Running query idx 126 with cid 44205240"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44205240\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44205240_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44205240"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44205240_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44205240_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44205240_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "126 completed."
[1] NA
[1] "Running query idx 127 with cid 20469"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"20469\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_20469_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"20469"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_20469_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_20469_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_20469_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "127 completed."
[1] NA
[1] "Running query idx 128 with cid 5388906"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5388906\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5388906_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5388906"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5388906_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5388906_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5388906_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "128 completed."
[1] NA
[1] "Running query idx 129 with cid 5362124"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5362124\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5362124_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5362124"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5362124_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5362124_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5362124_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "129 completed."
[1] NA
[1] "Running query idx 130 with cid 65628"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65628\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65628_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65628"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65628_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65628_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65628_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "130 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 131 with cid 16363"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16363\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16363_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16363"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16363_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16363_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16363_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "131 completed."
[1] NA
[1] "Running query idx 132 with cid 15232"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"15232\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_15232_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"15232"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_15232_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_15232_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_15232_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "132 completed."
[1] NA
[1] "Running query idx 133 with cid 12598398"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"12598398\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_12598398_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"12598398"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_12598398_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_12598398_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_12598398_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "133 completed."
[1] NA
[1] "Running query idx 134 with cid 2337"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2337\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2337_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2337"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2337_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2337_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2337_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "134 completed."
[1] NA
[1] "Running query idx 135 with cid 7187"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"7187\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_7187_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"7187"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_7187_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_7187_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_7187_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "135 completed."
[1] NA
[1] "Running query idx 136 with cid 5904"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5904\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5904_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5904"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5904_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5904_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5904_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "136 completed."
[1] NA
[1] "Running query idx 137 with cid 5280489"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5280489\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5280489_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5280489"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5280489_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5280489_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5280489_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "137 completed."
[1] NA
[1] "Running query idx 138 with cid 2366"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2366\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2366_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2366"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2366_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2366_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2366_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "138 completed."
[1] NA
[1] "Running query idx 139 with cid 9782"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9782\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9782_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9782_transformations: download successful"
$TP_File_Name
[1] "CID_9782_transformations.csv"

$TP_Unique_CIDs
[1] 443967   9782

[1] "139 completed."
[1] 443967   9782
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 140 with cid 2369"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2369\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2369_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2369"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2369_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2369_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2369_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "140 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 141 with cid 2370"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2370\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2370_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2370"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2370_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2370_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2370_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "141 completed."
[1] NA
[1] "Running query idx 142 with cid 82146"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"82146\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_82146_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"82146"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_82146_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_82146_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_82146_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "142 completed."
[1] NA
[1] "Running query idx 143 with cid 39042"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"39042\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_39042_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_39042_transformations: download successful"
$TP_File_Name
[1] "CID_39042_transformations.csv"

$TP_Unique_CIDs
[1] 1235725

[1] "143 completed."
[1] 1235725
[1] "Running query idx 144 with cid 2375"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2375\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2375_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2375"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2375_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2375_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2375_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "144 completed."
[1] NA
[1] "Running query idx 145 with cid 2378"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2378\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2378_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2378"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2378_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2378_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2378_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "145 completed."
[1] NA
[1] "Running query idx 146 with cid 185460"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"185460\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_185460_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"185460"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_185460_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_185460_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_185460_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "146 completed."
[1] NA
[1] "Running query idx 147 with cid 5311027"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311027\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311027_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311027"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311027_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311027_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311027_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "147 completed."
[1] NA
[1] "Running query idx 148 with cid 2381"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2381\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2381_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2381"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2381_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2381_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2381_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "148 completed."
[1] NA
[1] "Running query idx 149 with cid 7017"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"7017\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_7017_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"7017"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_7017_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_7017_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_7017_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "149 completed."
[1] NA
[1] "Running query idx 150 with cid 2391"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2391\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2391_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2391"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2391_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2391_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2391_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "150 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 151 with cid 2405"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2405\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2405_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2405"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2405_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2405_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2405_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "151 completed."
[1] NA
[1] "Running query idx 152 with cid 28689"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"28689\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_28689_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"28689"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_28689_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_28689_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_28689_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "152 completed."
[1] NA
[1] "Running query idx 153 with cid 387447"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"387447\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_387447_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"387447"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_387447_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_387447_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_387447_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "153 completed."
[1] NA
[1] "Running query idx 154 with cid 104865"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"104865\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_104865_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"104865"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_104865_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_104865_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_104865_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "154 completed."
[1] NA
[1] "Running query idx 155 with cid 2435"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2435\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2435_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2435"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2435_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2435_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2435_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "155 completed."
[1] NA
[1] "Running query idx 156 with cid 68844"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"68844\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_68844_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"68844"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_68844_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_68844_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_68844_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "156 completed."
[1] NA
[1] "Running query idx 157 with cid 9837243"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9837243\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9837243_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9837243"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9837243_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9837243_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9837243_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "157 completed."
[1] NA
[1] "Running query idx 158 with cid 446727"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"446727\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_446727_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"446727"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_446727_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_446727_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_446727_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "158 completed."
[1] NA
[1] "Running query idx 159 with cid 2441"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2441\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2441_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2441"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2441_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2441_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2441_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "159 completed."
[1] NA
[1] "Running query idx 160 with cid 2442"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2442\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2442_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2442"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2442_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2442_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2442_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "160 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 161 with cid 31101"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"31101\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_31101_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"31101"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_31101_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_31101_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_31101_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "161 completed."
[1] NA
[1] "Running query idx 162 with cid 2448"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2448\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2448_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2448"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2448_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2448_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2448_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "162 completed."
[1] NA
[1] "Running query idx 163 with cid 2451"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2451\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2451_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2451"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2451_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2451_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2451_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "163 completed."
[1] NA
[1] "Running query idx 164 with cid 5281004"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281004\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281004_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281004"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281004_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281004_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281004_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "164 completed."
[1] NA
[1] "Running query idx 165 with cid 2471"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2471\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2471_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2471"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2471_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2471_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2471_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "165 completed."
[1] NA
[1] "Running query idx 166 with cid 2474"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2474\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2474_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2474"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2474_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2474_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2474_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "166 completed."
[1] NA
[1] "Running query idx 167 with cid 644073"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"644073\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_644073_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"644073"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_644073_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_644073_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_644073_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "167 completed."
[1] NA
[1] "Running query idx 168 with cid 444"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"444\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_444_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"444"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_444_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_444_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_444_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "168 completed."
[1] NA
[1] "Running query idx 169 with cid 2478"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2478\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2478_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2478"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2478_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2478_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2478_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "169 completed."
[1] NA
[1] "Running query idx 170 with cid 28892"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"28892\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_28892_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"28892"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_28892_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_28892_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_28892_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "170 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 171 with cid 47472"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"47472\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_47472_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"47472"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_47472_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_47472_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_47472_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "171 completed."
[1] NA
[1] "Running query idx 172 with cid 54746"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54746\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54746_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54746"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54746_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54746_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54746_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "172 completed."
[1] NA
[1] "Running query idx 173 with cid 25102847"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25102847\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25102847_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25102847"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25102847_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25102847_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25102847_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "173 completed."
[1] NA
[1] "Running query idx 174 with cid 2519"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2519\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2519_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2519_transformations: download successful"
$TP_File_Name
[1] "CID_2519_transformations.csv"

$TP_Unique_CIDs
[1] 2153

[1] "174 completed."
[1] 2153
[1] "Running query idx 175 with cid 5288783"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5288783\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5288783_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5288783"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5288783_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5288783_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5288783_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "175 completed."
[1] NA
[1] "Running query idx 176 with cid 5280453"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5280453\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5280453_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5280453"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5280453_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5280453_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5280453_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "176 completed."
[1] NA
[1] "Running query idx 177 with cid 135403647"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135403647\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135403647_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135403647"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135403647_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135403647_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135403647_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "177 completed."
[1] NA
[1] "Running query idx 178 with cid 135883785"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135883785\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135883785_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135883785"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135883785_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135883785_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135883785_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "178 completed."
[1] NA
[1] "Running query idx 179 with cid 78759347"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"78759347\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_78759347_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"78759347"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_78759347_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_78759347_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_78759347_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "179 completed."
[1] NA
[1] "Running query idx 180 with cid 135436482"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135436482\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135436482_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135436482"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135436482_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135436482_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135436482_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "180 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 181 with cid 135430945"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135430945\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135430945_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135430945"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135430945_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135430945_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135430945_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "181 completed."
[1] NA
[1] "Running query idx 182 with cid 135500522"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135500522\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135500522_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135500522"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135500522_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135500522_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135500522_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "182 completed."
[1] NA
[1] "Running query idx 183 with cid 135430812"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135430812\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135430812_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135430812"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135430812_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135430812_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135430812_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "183 completed."
[1] NA
[1] "Running query idx 184 with cid 135403647"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135403647\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135403647_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135403647"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135403647_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135403647_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135403647_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "184 completed."
[1] NA
[1] "Running query idx 185 with cid 136047905"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136047905\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136047905_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136047905"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136047905_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136047905_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136047905_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "185 completed."
[1] NA
[1] "Running query idx 186 with cid 9854012"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9854012\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9854012_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9854012"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9854012_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9854012_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9854012_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "186 completed."
[1] NA
[1] "Running query idx 187 with cid 9852188"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9852188\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9852188_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9852188"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9852188_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9852188_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9852188_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "187 completed."
[1] NA
[1] "Running query idx 188 with cid 60953"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60953\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60953_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60953_transformations: download successful"
$TP_File_Name
[1] "CID_60953_transformations.csv"

$TP_Unique_CIDs
[1] 11809635

[1] "188 completed."
[1] 11809635
[1] "Running query idx 189 with cid 1548943"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1548943\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1548943_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1548943"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1548943_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1548943_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1548943_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "189 completed."
[1] NA
[1] "Running query idx 190 with cid 44093"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44093\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44093_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44093"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44093_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44093_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44093_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "190 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 191 with cid 5831"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5831\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5831_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5831"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5831_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5831_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5831_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "191 completed."
[1] NA
[1] "Running query idx 192 with cid 2554"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2554\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2554_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2554_transformations: download successful"
$TP_File_Name
[1] "CID_2554_transformations.csv"

$TP_Unique_CIDs
[1] 114725   2555   9212

[1] "192 completed."
[1] 114725   2555   9212
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 193 with cid 16681432"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16681432\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16681432_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16681432"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16681432_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16681432_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16681432_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "193 completed."
[1] NA
[1] "Running query idx 194 with cid 193653"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"193653\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_193653_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"193653"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_193653_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_193653_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_193653_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "194 completed."
[1] NA
[1] "Running query idx 195 with cid 426756"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"426756\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_426756_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"426756"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_426756_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_426756_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_426756_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "195 completed."
[1] NA
[1] "Running query idx 196 with cid 5281075"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281075\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281075_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281075"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281075_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281075_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281075_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "196 completed."
[1] NA
[1] "Running query idx 197 with cid 5281074"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281074\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281074_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281074"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281074_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281074_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281074_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "197 completed."
[1] NA
[1] "Running query idx 198 with cid 11556711"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11556711\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11556711_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11556711"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11556711_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11556711_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11556711_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "198 completed."
[1] NA
[1] "Running query idx 199 with cid 11154555"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11154555\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11154555_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11154555"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11154555_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11154555_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11154555_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "199 completed."
[1] NA
[1] "Running query idx 200 with cid 2583"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2583\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2583_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2583"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2583_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2583_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2583_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "200 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 201 with cid 2585"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2585\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2585_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2585"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2585_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2585_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2585_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "201 completed."
[1] NA
[1] "Running query idx 202 with cid 16119814"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16119814\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16119814_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16119814"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16119814_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16119814_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16119814_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "202 completed."
[1] NA
[1] "Running query idx 203 with cid 2826718"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2826718\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2826718_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2826718"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2826718_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2826718_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2826718_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "203 completed."
[1] NA
[1] "Running query idx 204 with cid 468682"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"468682\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_468682_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"468682"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_468682_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_468682_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_468682_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "204 completed."
[1] NA
[1] "Running query idx 205 with cid 151068"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"151068\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_151068_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"151068"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_151068_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_151068_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_151068_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "205 completed."
[1] NA
[1] "Running query idx 206 with cid 9963413"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9963413\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9963413_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9963413"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9963413_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9963413_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9963413_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "206 completed."
[1] NA
[1] "Running query idx 207 with cid 3035406"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3035406\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3035406_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3035406"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3035406_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3035406_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3035406_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "207 completed."
[1] NA
[1] "Running query idx 208 with cid 138394206"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"138394206\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_138394206_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"138394206"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_138394206_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_138394206_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_138394206_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "208 completed."
[1] NA
[1] "Running query idx 209 with cid 25246317"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25246317\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25246317_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25246317"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25246317_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25246317_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25246317_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "209 completed."
[1] NA
[1] "Running query idx 210 with cid 139586083"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"139586083\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_139586083_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"139586083"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_139586083_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_139586083_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_139586083_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "210 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 211 with cid 58012659"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"58012659\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_58012659_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"58012659"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_58012659_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_58012659_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_58012659_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "211 completed."
[1] NA
[1] "Running query idx 212 with cid 129627691"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129627691\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129627691_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129627691"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129627691_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129627691_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129627691_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "212 completed."
[1] NA
[1] "Running query idx 213 with cid 47965"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"47965\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_47965_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"47965"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_47965_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_47965_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_47965_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "213 completed."
[1] NA
[1] "Running query idx 214 with cid 27447"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"27447\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_27447_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"27447"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_27447_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_27447_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_27447_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "214 completed."
[1] NA
[1] "Running query idx 215 with cid 33255"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"33255\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_33255_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"33255"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_33255_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_33255_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_33255_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "215 completed."
[1] NA
[1] "Running query idx 216 with cid 5479537"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5479537\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5479537_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5479537"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5479537_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5479537_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5479537_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "216 completed."
[1] NA
[1] "Running query idx 217 with cid 5464190"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5464190\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5464190_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5464190"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5464190_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5464190_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5464190_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "217 completed."
[1] NA
[1] "Running query idx 218 with cid 2622"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2622\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2622_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2622"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2622_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2622_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2622_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "218 completed."
[1] NA
[1] "Running query idx 219 with cid 9615345"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9615345\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9615345_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9615345"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9615345_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9615345_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9615345_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "219 completed."
[1] NA
[1] "Running query idx 220 with cid 53486338"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53486338\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53486338_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53486338"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53486338_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53486338_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53486338_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "220 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 221 with cid 5353490"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5353490\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5353490_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5353490"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5353490_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5353490_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5353490_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "221 completed."
[1] NA
[1] "Running query idx 222 with cid 68606"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"68606\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_68606_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"68606"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_68606_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_68606_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_68606_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "222 completed."
[1] NA
[1] "Running query idx 223 with cid 29933395"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"29933395\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_29933395_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"29933395"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_29933395_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_29933395_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_29933395_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "223 completed."
[1] NA
[1] "Running query idx 224 with cid 138113406"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"138113406\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_138113406_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"138113406"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_138113406_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_138113406_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_138113406_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "224 completed."
[1] NA
[1] "Running query idx 225 with cid 5742673"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5742673\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5742673_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5742673"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5742673_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5742673_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5742673_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "225 completed."
[1] NA
[1] "Running query idx 226 with cid 5479527"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5479527\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5479527_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5479527"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5479527_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5479527_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5479527_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "226 completed."
[1] NA
[1] "Running query idx 227 with cid 456256"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"456256\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_456256_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"456256"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_456256_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_456256_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_456256_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "227 completed."
[1] NA
[1] "Running query idx 228 with cid 2632"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2632\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2632_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2632"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2632_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2632_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2632_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "228 completed."
[1] NA
[1] "Running query idx 229 with cid 6540461"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6540461\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6540461_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6540461"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6540461_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6540461_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6540461_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "229 completed."
[1] NA
[1] "Running query idx 230 with cid 5361298"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5361298\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5361298_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5361298"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5361298_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5361298_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5361298_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "230 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 231 with cid 5916965"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5916965\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5916965_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5916965"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5916965_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5916965_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5916965_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "231 completed."
[1] NA
[1] "Running query idx 232 with cid 12971804"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"12971804\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_12971804_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"12971804"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_12971804_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_12971804_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_12971804_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "232 completed."
[1] NA
[1] "Running query idx 233 with cid 53850837"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53850837\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53850837_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53850837"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53850837_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53850837_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53850837_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "233 completed."
[1] NA
[1] "Running query idx 234 with cid 9852981"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9852981\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9852981_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9852981"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9852981_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9852981_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9852981_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "234 completed."
[1] NA
[1] "Running query idx 235 with cid 56841980"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"56841980\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_56841980_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"56841980"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_56841980_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_56841980_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_56841980_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "235 completed."
[1] NA
[1] "Running query idx 236 with cid 73425380"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"73425380\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_73425380_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"73425380"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_73425380_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_73425380_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_73425380_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "236 completed."
[1] NA
[1] "Running query idx 237 with cid 16007393"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16007393\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16007393_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16007393"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16007393_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16007393_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16007393_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "237 completed."
[1] NA
[1] "Running query idx 238 with cid 57514685"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"57514685\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_57514685_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"57514685"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_57514685_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_57514685_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_57514685_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "238 completed."
[1] NA
[1] "Running query idx 239 with cid 137705190"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137705190\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137705190_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137705190"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137705190_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137705190_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137705190_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "239 completed."
[1] NA
[1] "Running query idx 240 with cid 85076844"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"85076844\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_85076844_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"85076844"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_85076844_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_85076844_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_85076844_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "240 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 241 with cid 72562362"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"72562362\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_72562362_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"72562362"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_72562362_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_72562362_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_72562362_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "241 completed."
[1] NA
[1] "Running query idx 242 with cid 134714754"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134714754\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134714754_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134714754"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134714754_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134714754_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134714754_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "242 completed."
[1] NA
[1] "Running query idx 243 with cid 5481173"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5481173\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5481173_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5481173"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5481173_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5481173_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5481173_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "243 completed."
[1] NA
[1] "Running query idx 244 with cid 5484131"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5484131\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5484131_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5484131"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5484131_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5484131_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5484131_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "244 completed."
[1] NA
[1] "Running query idx 245 with cid 91713"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"91713\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_91713_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"91713"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_91713_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_91713_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_91713_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "245 completed."
[1] NA
[1] "Running query idx 246 with cid 66509024"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"66509024\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_66509024_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"66509024"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_66509024_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_66509024_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_66509024_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "246 completed."
[1] NA
[1] "Running query idx 247 with cid 44298077"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44298077\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44298077_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44298077"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44298077_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44298077_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44298077_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "247 completed."
[1] NA
[1] "Running query idx 248 with cid 133687818"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"133687818\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_133687818_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"133687818"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_133687818_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_133687818_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_133687818_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "248 completed."
[1] NA
[1] "Running query idx 249 with cid 5479530"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5479530\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5479530_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5479530"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5479530_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5479530_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5479530_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "249 completed."
[1] NA
[1] "Running query idx 250 with cid 23679441"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23679441\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23679441_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23679441"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23679441_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23679441_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23679441_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "250 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 251 with cid 9570985"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9570985\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9570985_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9570985"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9570985_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9570985_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9570985_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "251 completed."
[1] NA
[1] "Running query idx 252 with cid 46173365"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"46173365\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_46173365_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"46173365"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_46173365_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_46173365_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_46173365_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "252 completed."
[1] NA
[1] "Running query idx 253 with cid 5479529"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5479529\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5479529_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5479529"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5479529_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5479529_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5479529_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "253 completed."
[1] NA
[1] "Running query idx 254 with cid 5361202"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5361202\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5361202_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5361202"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5361202_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5361202_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5361202_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "254 completed."
[1] NA
[1] "Running query idx 255 with cid 41375"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"41375\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_41375_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"41375"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_41375_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_41375_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_41375_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "255 completed."
[1] NA
[1] "Running query idx 256 with cid 2659"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2659\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2659_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2659"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2659_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2659_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2659_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "256 completed."
[1] NA
[1] "Running query idx 257 with cid 9601223"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9601223\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9601223_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9601223"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9601223_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9601223_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9601223_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "257 completed."
[1] NA
[1] "Running query idx 258 with cid 5353516"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5353516\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5353516_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5353516"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5353516_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5353516_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5353516_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "258 completed."
[1] NA
[1] "Running query idx 259 with cid 6914282"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6914282\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6914282_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6914282"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6914282_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6914282_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6914282_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "259 completed."
[1] NA
[1] "Running query idx 260 with cid 57267191"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"57267191\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_57267191_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"57267191"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_57267191_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_57267191_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_57267191_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "260 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 261 with cid 2662"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2662\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2662_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2662"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2662_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2662_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2662_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "261 completed."
[1] NA
[1] "Running query idx 262 with cid 2663"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2663\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2663_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2663"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2663_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2663_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2663_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "262 completed."
[1] NA
[1] "Running query idx 263 with cid 57379345"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"57379345\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_57379345_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"57379345"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_57379345_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_57379345_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_57379345_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "263 completed."
[1] NA
[1] "Running query idx 264 with cid 2678"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2678\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2678_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2678"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2678_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2678_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2678_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "264 completed."
[1] NA
[1] "Running query idx 265 with cid 25074887"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25074887\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25074887_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25074887"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25074887_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25074887_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25074887_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "265 completed."
[1] NA
[1] "Running query idx 266 with cid 2708"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2708\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2708_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2708"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2708_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2708_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2708_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "266 completed."
[1] NA
[1] "Running query idx 267 with cid 5959"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5959\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5959_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5959"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5959_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5959_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5959_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "267 completed."
[1] NA
[1] "Running query idx 268 with cid 9552079"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9552079\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9552079_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9552079"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9552079_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9552079_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9552079_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "268 completed."
[1] NA
[1] "Running query idx 269 with cid 5284533"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284533\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284533_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284533"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284533_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284533_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284533_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "269 completed."
[1] NA
[1] "Running query idx 270 with cid 2723"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2723\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2723_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2723"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2723_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2723_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2723_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "270 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 271 with cid 2725"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2725\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2725_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2725"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2725_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2725_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2725_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "271 completed."
[1] NA
[1] "Running query idx 272 with cid 6475"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6475\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6475_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6475"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6475_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6475_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6475_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "272 completed."
[1] NA
[1] "Running query idx 273 with cid 54675777"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54675777\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54675777_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54675777"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54675777_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54675777_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54675777_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "273 completed."
[1] NA
[1] "Running query idx 274 with cid 2749"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2749\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2749_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2749"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2749_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2749_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2749_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "274 completed."
[1] NA
[1] "Running query idx 275 with cid 5284373"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284373\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284373_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284373"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284373_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284373_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284373_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "275 completed."
[1] NA
[1] "Running query idx 276 with cid 5280754"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5280754\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5280754_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5280754"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5280754_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5280754_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5280754_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "276 completed."
[1] NA
[1] "Running query idx 277 with cid 6435893"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6435893\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6435893_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6435893"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6435893_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6435893_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6435893_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "277 completed."
[1] NA
[1] "Running query idx 278 with cid 5497195"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5497195\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5497195_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5497195"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5497195_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5497195_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5497195_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "278 completed."
[1] NA
[1] "Running query idx 279 with cid 24883466"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24883466\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24883466_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24883466"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24883466_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24883466_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24883466_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "279 completed."
[1] NA
[1] "Running query idx 280 with cid 6435415"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6435415\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6435415_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6435415"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6435415_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6435415_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6435415_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "280 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 281 with cid 56330"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"56330\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_56330_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"56330"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_56330_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_56330_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_56330_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "281 completed."
[1] NA
[1] "Running query idx 282 with cid 156419"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"156419\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_156419_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"156419"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_156419_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_156419_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_156419_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "282 completed."
[1] NA
[1] "Running query idx 283 with cid 1547484"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1547484\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1547484_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1547484"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1547484_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1547484_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1547484_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "283 completed."
[1] NA
[1] "Running query idx 284 with cid 2763"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2763\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2763_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2763"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2763_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2763_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2763_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "284 completed."
[1] NA
[1] "Running query idx 285 with cid 2764"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2764\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2764_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2764"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2764_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2764_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2764_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "285 completed."
[1] NA
[1] "Running query idx 286 with cid 62887"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"62887\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_62887_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"62887"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_62887_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_62887_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_62887_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "286 completed."
[1] NA
[1] "Running query idx 288 with cid 2771"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2771\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2771_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2771"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2771_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2771_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2771_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "287 completed."
[1] NA
[1] "Running query idx 289 with cid 20279"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"20279\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_20279_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"20279"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_20279_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_20279_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_20279_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "288 completed."
[1] NA
[1] "Running query idx 290 with cid 84029"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"84029\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_84029_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_84029_transformations: download successful"
$TP_File_Name
[1] "CID_84029_transformations.csv"

$TP_Unique_CIDs
[1] 11320230

[1] "289 completed."
[1] 11320230
[1] "Running query idx 291 with cid 153994"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"153994\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_153994_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"153994"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_153994_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_153994_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_153994_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "290 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 292 with cid 446598"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"446598\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_446598_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"446598"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_446598_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_446598_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_446598_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "291 completed."
[1] NA
[1] "Running query idx 293 with cid 29029"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"29029\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_29029_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"29029"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_29029_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_29029_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_29029_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "292 completed."
[1] NA
[1] "Running query idx 294 with cid 2786"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2786\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2786_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2786"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2786_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2786_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2786_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "293 completed."
[1] NA
[1] "Running query idx 295 with cid 45357041"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"45357041\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_45357041_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"45357041"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_45357041_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_45357041_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_45357041_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "294 completed."
[1] NA
[1] "Running query idx 296 with cid 27281318"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"27281318\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_27281318_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"27281318"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_27281318_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_27281318_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_27281318_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "295 completed."
[1] NA
[1] "Running query idx 297 with cid 129009913"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129009913\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129009913_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129009913"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129009913_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129009913_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129009913_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "296 completed."
[1] NA
[1] "Running query idx 298 with cid 53245639"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53245639\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53245639_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53245639"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53245639_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53245639_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53245639_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "297 completed."
[1] NA
[1] "Running query idx 299 with cid 46783762"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"46783762\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_46783762_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"46783762"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_46783762_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_46783762_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_46783762_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "298 completed."
[1] NA
[1] "Running query idx 300 with cid 129627692"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129627692\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129627692_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129627692"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129627692_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129627692_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129627692_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "299 completed."
[1] NA
[1] "Running query idx 301 with cid 2789"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2789\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2789_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2789"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2789_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2789_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2789_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "300 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 302 with cid 5311051"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311051\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311051_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311051"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311051_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311051_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311051_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "301 completed."
[1] NA
[1] "Running query idx 303 with cid 25419"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25419\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25419_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25419"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25419_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25419_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25419_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "302 completed."
[1] NA
[1] "Running query idx 304 with cid 1548953"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1548953\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1548953_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1548953"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1548953_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1548953_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1548953_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "303 completed."
[1] NA
[1] "Running query idx 305 with cid 2800"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2800\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2800_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2800"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2800_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2800_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2800_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "304 completed."
[1] NA
[1] "Running query idx 306 with cid 1548955"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1548955\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1548955_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1548955"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1548955_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1548955_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1548955_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "305 completed."
[1] NA
[1] "Running query idx 307 with cid 2801"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2801\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2801_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2801"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2801_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2801_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2801_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "306 completed."
[1] NA
[1] "Running query idx 308 with cid 2802"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2802\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2802_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2802"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2802_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2802_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2802_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "307 completed."
[1] NA
[1] "Running query idx 309 with cid 2803"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2803\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2803_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2803"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2803_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2803_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2803_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "308 completed."
[1] NA
[1] "Running query idx 310 with cid 2805"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2805\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2805_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2805"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2805_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2805_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2805_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "309 completed."
[1] NA
[1] "Running query idx 311 with cid 60606"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60606\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60606_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60606"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60606_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60606_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60606_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "310 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 312 with cid 2811"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2811\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2811_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2811"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2811_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2811_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2811_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "311 completed."
[1] NA
[1] "Running query idx 313 with cid 2812"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2812\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2812_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2812"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2812_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2812_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2812_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "312 completed."
[1] NA
[1] "Running query idx 314 with cid 2816"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2816\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2816_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2816"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2816_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2816_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2816_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "313 completed."
[1] NA
[1] "Running query idx 315 with cid 135398737"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398737\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398737_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398737_transformations: download successful"
$TP_File_Name
[1] "CID_135398737_transformations.csv"

$TP_Unique_CIDs
[1] 135409468

[1] "314 completed."
[1] 135409468
[1] "Running query idx 316 with cid 25151504"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25151504\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25151504_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25151504"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25151504_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25151504_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25151504_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "315 completed."
[1] NA
[1] "Running query idx 317 with cid 16222096"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16222096\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16222096_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16222096"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16222096_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16222096_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16222096_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "316 completed."
[1] NA
[1] "Running query idx 318 with cid 5284371"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284371\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284371_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284371_transformations: download successful"
$TP_File_Name
[1] "CID_5284371_transformations.csv"

$TP_Unique_CIDs
[1] 5288826

[1] "317 completed."
[1] 5288826
[1] "Running query idx 319 with cid 6167"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6167\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6167_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6167"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6167_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6167_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6167_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "318 completed."
[1] NA
[1] "Running query idx 320 with cid 5280795"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5280795\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5280795_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5280795"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5280795_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5280795_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5280795_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "319 completed."
[1] NA
[1] "Running query idx 321 with cid 11626560"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11626560\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11626560_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11626560"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11626560_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11626560_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11626560_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "320 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 322 with cid 2882"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2882\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2882_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2882"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2882_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2882_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2882_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "321 completed."
[1] NA
[1] "Running query idx 323 with cid 2905"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2905\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2905_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2905"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2905_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2905_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2905_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "322 completed."
[1] NA
[1] "Running query idx 324 with cid 5284537"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284537\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284537_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284537"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284537_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284537_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284537_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "323 completed."
[1] NA
[1] "Running query idx 326 with cid 44462760"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44462760\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44462760_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44462760"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44462760_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44462760_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44462760_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "324 completed."
[1] NA
[1] "Running query idx 328 with cid 9887712"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9887712\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9887712_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9887712"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9887712_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9887712_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9887712_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "325 completed."
[1] NA
[1] "Running query idx 329 with cid 71353"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71353\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71353_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71353"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71353_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71353_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71353_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "326 completed."
[1] NA
[1] "Running query idx 330 with cid 444031"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"444031\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_444031_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"444031"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_444031_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_444031_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_444031_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "327 completed."
[1] NA
[1] "Running query idx 331 with cid 213039"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"213039\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_213039_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"213039"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_213039_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_213039_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_213039_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "328 completed."
[1] NA
[1] "Running query idx 332 with cid 3062316"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3062316\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3062316_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3062316"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3062316_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3062316_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3062316_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "329 completed."
[1] NA
[1] "Running query idx 333 with cid 30323"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"30323\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_30323_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"30323"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_30323_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_30323_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_30323_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "330 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 334 with cid 451668"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"451668\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_451668_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"451668"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_451668_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_451668_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_451668_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "331 completed."
[1] NA
[1] "Running query idx 335 with cid 214348"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"214348\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_214348_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"214348"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_214348_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_214348_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_214348_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "332 completed."
[1] NA
[1] "Running query idx 336 with cid 2972"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2972\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2972_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2972"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2972_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2972_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2972_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "333 completed."
[1] NA
[1] "Running query idx 337 with cid 2973"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2973\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2973_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2973"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2973_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2973_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2973_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "334 completed."
[1] NA
[1] "Running query idx 338 with cid 189821"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"189821\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_189821_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"189821"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_189821_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_189821_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_189821_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "335 completed."
[1] NA
[1] "Running query idx 339 with cid 2993"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2993\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2993_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2993"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2993_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2993_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2993_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "336 completed."
[1] NA
[1] "Running query idx 340 with cid 42113"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"42113\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_42113_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"42113"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_42113_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_42113_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_42113_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "337 completed."
[1] NA
[1] "Running query idx 341 with cid 124087"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"124087\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_124087_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"124087"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_124087_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_124087_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_124087_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "338 completed."
[1] NA
[1] "Running query idx 342 with cid 5311065"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311065\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311065_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311065"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311065_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311065_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311065_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "339 completed."
[1] NA
[1] "Running query idx 343 with cid 27991"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"27991\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_27991_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"27991"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_27991_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_27991_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_27991_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "340 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 344 with cid 16051933"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16051933\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16051933_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16051933"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16051933_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16051933_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16051933_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "341 completed."
[1] NA
[1] "Running query idx 345 with cid 137706049"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137706049\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137706049_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137706049"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137706049_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137706049_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137706049_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "342 completed."
[1] NA
[1] "Running query idx 346 with cid 40973"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"40973\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_40973_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"40973"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_40973_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_40973_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_40973_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "343 completed."
[1] NA
[1] "Running query idx 347 with cid 5311066"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311066\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311066_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311066"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311066_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311066_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311066_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "344 completed."
[1] NA
[1] "Running query idx 348 with cid 5743"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5743\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5743_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5743_transformations: download successful"
$TP_File_Name
[1] "CID_5743_transformations.csv"

$TP_Unique_CIDs
[1] 236702

[1] "345 completed."
[1] 236702
[1] "Running query idx 349 with cid 131204"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"131204\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_131204_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"131204"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_131204_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_131204_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_131204_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "346 completed."
[1] NA
[1] "Running query idx 350 with cid 71384"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71384\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71384_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71384"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71384_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71384_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71384_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "347 completed."
[1] NA
[1] "Running query idx 351 with cid 5360696"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5360696\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5360696_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5360696"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5360696_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5360696_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5360696_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "348 completed."
[1] NA
[1] "Running query idx 352 with cid 3016"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3016\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3016_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3016_transformations: download successful"
$TP_File_Name
[1] "CID_3016_transformations.csv"

$TP_Unique_CIDs
[1] 2997

[1] "349 completed."
[1] 2997
[1] "Running query idx 354 with cid 3033"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3033\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3033_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3033_transformations: download successful"
$TP_File_Name
[1] "CID_3033_transformations.csv"

$TP_Unique_CIDs
[1]  116545 3052566

[1] "350 completed."
[1]  116545 3052566
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "pause for 20 seconds "
[1] "Running query idx 355 with cid 68861"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"68861\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_68861_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"68861"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_68861_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_68861_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_68861_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "351 completed."
[1] NA
[1] "Running query idx 356 with cid 2724385"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2724385\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2724385_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2724385"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2724385_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2724385_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2724385_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "352 completed."
[1] NA
[1] "Running query idx 357 with cid 39186"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"39186\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_39186_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"39186"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_39186_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_39186_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_39186_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "353 completed."
[1] NA
[1] "Running query idx 358 with cid 637568"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"637568\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_637568_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"637568"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_637568_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_637568_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_637568_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "354 completed."
[1] NA
[1] "Running query idx 359 with cid 21855"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"21855\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_21855_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"21855"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_21855_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_21855_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_21855_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "355 completed."
[1] NA
[1] "Running query idx 360 with cid 5280360"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5280360\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5280360_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5280360"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5280360_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5280360_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5280360_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "356 completed."
[1] NA
[1] "Running query idx 361 with cid 3100"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3100\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3100_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3100"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3100_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3100_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3100_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "357 completed."
[1] NA
[1] "Running query idx 362 with cid 3114"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3114\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3114_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3114"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3114_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3114_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3114_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "358 completed."
[1] NA
[1] "Running query idx 363 with cid 3117"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3117\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3117_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3117"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3117_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3117_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3117_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "359 completed."
[1] NA
[1] "Running query idx 364 with cid 36811"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"36811\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_36811_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"36811"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_36811_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_36811_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_36811_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "360 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 365 with cid 148124"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"148124\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_148124_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"148124"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_148124_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_148124_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_148124_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "361 completed."
[1] NA
[1] "Running query idx 366 with cid 12620"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"12620\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_12620_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"12620"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_12620_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_12620_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_12620_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "362 completed."
[1] NA
[1] "Running query idx 367 with cid 23673837"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23673837\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23673837_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23673837"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23673837_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23673837_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23673837_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "363 completed."
[1] NA
[1] "Running query idx 368 with cid 3151"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3151\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3151_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3151"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3151_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3151_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3151_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "364 completed."
[1] NA
[1] "Running query idx 369 with cid 3152"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3152\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3152_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3152"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3152_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3152_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3152_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "365 completed."
[1] NA
[1] "Running query idx 370 with cid 5284550"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284550\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284550_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284550"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284550_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284550_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284550_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "366 completed."
[1] NA
[1] "Running query idx 371 with cid 5282426"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5282426\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5282426_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5282426"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5282426_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5282426_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5282426_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "367 completed."
[1] NA
[1] "Running query idx 372 with cid 3155"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3155\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3155_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3155"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3155_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3155_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3155_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "368 completed."
[1] NA
[1] "Running query idx 373 with cid 54671203"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54671203\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54671203_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54671203"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54671203_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54671203_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54671203_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "369 completed."
[1] NA
[1] "Running query idx 374 with cid 3168"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3168\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3168_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3168"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3168_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3168_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3168_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "370 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 375 with cid 68873"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"68873\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_68873_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"68873"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_68873_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_68873_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_68873_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "371 completed."
[1] NA
[1] "Running query idx 376 with cid 60835"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60835\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60835_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60835"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60835_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60835_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60835_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "372 completed."
[1] NA
[1] "Running query idx 377 with cid 6918296"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918296\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918296_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918296"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918296_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918296_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918296_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "373 completed."
[1] NA
[1] "Running query idx 378 with cid 9051"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9051\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9051_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9051"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9051_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9051_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9051_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "374 completed."
[1] NA
[1] "Running query idx 379 with cid 3191"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3191\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3191_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3191"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3191_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3191_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3191_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "375 completed."
[1] NA
[1] "Running query idx 380 with cid 3198"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3198\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3198_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3198"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3198_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3198_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3198_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "376 completed."
[1] NA
[1] "Running query idx 381 with cid 64139"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"64139\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_64139_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"64139"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_64139_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_64139_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_64139_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "377 completed."
[1] NA
[1] "Running query idx 382 with cid 77993"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"77993\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_77993_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"77993"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_77993_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_77993_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_77993_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "378 completed."
[1] NA
[1] "Running query idx 383 with cid 135449332"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135449332\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135449332_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135449332"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135449332_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135449332_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135449332_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "379 completed."
[1] NA
[1] "Running query idx 384 with cid 3219"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3219\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3219_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3219"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3219_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3219_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3219_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "380 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 385 with cid 60877"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60877\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60877_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60877_transformations: download successful"
$TP_File_Name
[1] "CID_60877_transformations.csv"

$TP_Unique_CIDs
[1] 3366

[1] "381 completed."
[1] 3366
[1] "Running query idx 386 with cid 5388962"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5388962\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5388962_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5388962"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5388962_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5388962_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5388962_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "382 completed."
[1] NA
[1] "Running query idx 387 with cid 5281081"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281081\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281081_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281081"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281081_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281081_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281081_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "383 completed."
[1] NA
[1] "Running query idx 388 with cid 135398508"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398508\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398508_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398508"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398508_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398508_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398508_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "384 completed."
[1] NA
[1] "Running query idx 389 with cid 15951529"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"15951529\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_15951529_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"15951529"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_15951529_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_15951529_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_15951529_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "385 completed."
[1] NA
[1] "Running query idx 390 with cid 9294"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9294\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9294_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9294"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9294_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9294_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9294_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "386 completed."
[1] NA
[1] "Running query idx 391 with cid 3241"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3241\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3241_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3241"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3241_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3241_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3241_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "387 completed."
[1] NA
[1] "Running query idx 392 with cid 5816"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5816\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5816_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5816"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5816_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5816_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5816_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "388 completed."
[1] NA
[1] "Running query idx 393 with cid 41867"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"41867\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_41867_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"41867"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_41867_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_41867_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_41867_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "389 completed."
[1] NA
[1] "Running query idx 394 with cid 443872"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"443872\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_443872_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"443872"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_443872_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_443872_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_443872_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "390 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 395 with cid 9953590"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9953590\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9953590_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9953590"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9953590_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9953590_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9953590_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "391 completed."
[1] NA
[1] "Running query idx 396 with cid 21865526"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"21865526\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_21865526_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"21865526"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_21865526_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_21865526_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_21865526_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "392 completed."
[1] NA
[1] "Running query idx 397 with cid 150310"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"150310\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_150310_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"150310"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_150310_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_150310_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_150310_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "393 completed."
[1] NA
[1] "Running query idx 398 with cid 124040753"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"124040753\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_124040753_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"124040753"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_124040753_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_124040753_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_124040753_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "394 completed."
[1] NA
[1] "Running query idx 399 with cid 129009858"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129009858\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129009858_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129009858"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129009858_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129009858_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129009858_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "395 completed."
[1] NA
[1] "Running query idx 400 with cid 24847741"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24847741\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24847741_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24847741"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24847741_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24847741_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24847741_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "396 completed."
[1] NA
[1] "Running query idx 401 with cid 5282411"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5282411\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5282411_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5282411"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5282411_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5282411_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5282411_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "397 completed."
[1] NA
[1] "Running query idx 402 with cid 6364626"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6364626\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6364626_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6364626"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6364626_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6364626_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6364626_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "398 completed."
[1] NA
[1] "Running query idx 403 with cid 67548346"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"67548346\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_67548346_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"67548346"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_67548346_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_67548346_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_67548346_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "399 completed."
[1] NA
[1] "Running query idx 404 with cid 21158562"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"21158562\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_21158562_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"21158562"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_21158562_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_21158562_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_21158562_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "400 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 405 with cid 5281037"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281037\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281037_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281037"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281037_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281037_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281037_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "401 completed."
[1] NA
[1] "Running query idx 406 with cid 448812"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"448812\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_448812_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"448812"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_448812_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_448812_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_448812_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "402 completed."
[1] NA
[1] "Running query idx 407 with cid 65632"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65632\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65632_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65632"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65632_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65632_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65632_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "403 completed."
[1] NA
[1] "Running query idx 408 with cid 11354606"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11354606\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11354606_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11354606"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11354606_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11354606_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11354606_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "404 completed."
[1] NA
[1] "Running query idx 409 with cid 176870"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"176870\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_176870_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"176870"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_176870_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_176870_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_176870_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "405 completed."
[1] NA
[1] "Running query idx 410 with cid 150610"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"150610\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_150610_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"150610"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_150610_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_150610_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_150610_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "406 completed."
[1] NA
[1] "Running query idx 411 with cid 12560"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"12560\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_12560_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"12560"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_12560_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_12560_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_12560_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "407 completed."
[1] NA
[1] "Running query idx 412 with cid 146570"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"146570\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_146570_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"146570"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_146570_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_146570_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_146570_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "408 completed."
[1] NA
[1] "Running query idx 413 with cid 59768"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"59768\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_59768_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"59768"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_59768_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_59768_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_59768_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "409 completed."
[1] NA
[1] "Running query idx 414 with cid 9568614"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9568614\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9568614_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9568614"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9568614_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9568614_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9568614_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "410 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 415 with cid 4594"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4594\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4594_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4594"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4594_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4594_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4594_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "411 completed."
[1] NA
[1] "Running query idx 416 with cid 9579578"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9579578\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9579578_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9579578"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9579578_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9579578_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9579578_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "412 completed."
[1] NA
[1] "Running query idx 417 with cid 5757"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5757\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5757_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5757"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5757_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5757_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5757_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "413 completed."
[1] NA
[1] "Running query idx 418 with cid 259331"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"259331\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_259331_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"259331"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_259331_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_259331_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_259331_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "414 completed."
[1] NA
[1] "Running query idx 419 with cid 5756"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5756\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5756_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5756"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5756_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5756_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5756_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "415 completed."
[1] NA
[1] "Running query idx 420 with cid 17506"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"17506\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_17506_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"17506"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_17506_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_17506_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_17506_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "416 completed."
[1] NA
[1] "Running query idx 421 with cid 71511839"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71511839\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71511839_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71511839"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71511839_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71511839_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71511839_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "417 completed."
[1] NA
[1] "Running query idx 422 with cid 14052"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"14052\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_14052_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"14052"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_14052_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_14052_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_14052_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "418 completed."
[1] NA
[1] "Running query idx 423 with cid 702"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"702\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_702_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"702"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_702_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_702_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_702_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "419 completed."
[1] NA
[1] "Running query idx 424 with cid 5991"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5991\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5991_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5991"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5991_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5991_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5991_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "420 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 425 with cid 3291"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3291\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3291_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3291"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3291_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3291_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3291_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "421 completed."
[1] NA
[1] "Running query idx 426 with cid 5359271"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5359271\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5359271_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5359271"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5359271_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5359271_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5359271_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "422 completed."
[1] NA
[1] "Running query idx 427 with cid 3306"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3306\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3306_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3306"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3306_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3306_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3306_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "423 completed."
[1] NA
[1] "Running query idx 428 with cid 35375"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"35375\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_35375_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"35375"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_35375_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_35375_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_35375_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "424 completed."
[1] NA
[1] "Running query idx 429 with cid 36339"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"36339\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_36339_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"36339"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_36339_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_36339_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_36339_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "425 completed."
[1] NA
[1] "Running query idx 430 with cid 667484"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"667484\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_667484_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"667484"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_667484_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_667484_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_667484_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "426 completed."
[1] NA
[1] "Running query idx 431 with cid 6338045"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6338045\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6338045_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6338045"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6338045_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6338045_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6338045_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "427 completed."
[1] NA
[1] "Running query idx 432 with cid 6917715"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6917715\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6917715_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6917715"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6917715_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6917715_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6917715_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "428 completed."
[1] NA
[1] "Running query idx 433 with cid 123619"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"123619\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_123619_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"123619"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_123619_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_123619_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_123619_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "429 completed."
[1] NA
[1] "Running query idx 434 with cid 193962"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"193962\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_193962_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"193962"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_193962_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_193962_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_193962_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "430 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 435 with cid 6442177"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6442177\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6442177_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6442177"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6442177_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6442177_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6442177_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "431 completed."
[1] NA
[1] "Running query idx 436 with cid 60198"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60198\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60198_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60198"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60198_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60198_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60198_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "432 completed."
[1] NA
[1] "Running query idx 437 with cid 45588096"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"45588096\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_45588096_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"45588096"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_45588096_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_45588096_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_45588096_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "433 completed."
[1] NA
[1] "Running query idx 438 with cid 56927919"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"56927919\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_56927919_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"56927919"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_56927919_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_56927919_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_56927919_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "434 completed."
[1] NA
[1] "Running query idx 439 with cid 53396299"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53396299\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53396299_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53396299"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53396299_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53396299_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53396299_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "435 completed."
[1] NA
[1] "Running query idx 440 with cid 138394057"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"138394057\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_138394057_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"138394057"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_138394057_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_138394057_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_138394057_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "436 completed."
[1] NA
[1] "Running query idx 441 with cid 150311"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"150311\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_150311_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"150311"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_150311_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_150311_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_150311_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "437 completed."
[1] NA
[1] "Running query idx 442 with cid 1727"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1727\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1727_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1727"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1727_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1727_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1727_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "438 completed."
[1] NA
[1] "Running query idx 443 with cid 134018"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134018\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134018_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134018"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134018_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134018_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134018_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "439 completed."
[1] NA
[1] "Running query idx 444 with cid 3331"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3331\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3331_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3331"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3331_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3331_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3331_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "440 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 445 with cid 3332"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3332\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3332_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3332"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3332_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3332_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3332_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "441 completed."
[1] NA
[1] "Running query idx 446 with cid 3333"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3333\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3333_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3333"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3333_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3333_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3333_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "442 completed."
[1] NA
[1] "Running query idx 447 with cid 3339"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3339\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3339_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3339_transformations: download successful"
$TP_File_Name
[1] "CID_3339_transformations.csv"

$TP_Unique_CIDs
[1] 64929

[1] "443 completed."
[1] 64929
[1] "Running query idx 448 with cid 3343"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3343\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3343_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3343"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3343_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3343_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3343_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "444 completed."
[1] NA
[1] "Running query idx 449 with cid 3345"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3345\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3345_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3345_transformations: download successful"
$TP_File_Name
[1] "CID_3345_transformations.csv"

$TP_Unique_CIDs
[1] 6992364

[1] "445 completed."
[1] 6992364
[1] "Running query idx 450 with cid 51755"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"51755\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_51755_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"51755"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_51755_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_51755_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_51755_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "446 completed."
[1] NA
[1] "Running query idx 451 with cid 6918558"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918558\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918558_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918558"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918558_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918558_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918558_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "447 completed."
[1] NA
[1] "Running query idx 452 with cid 57363"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"57363\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_57363_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"57363"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_57363_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_57363_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_57363_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "448 completed."
[1] NA
[1] "Running query idx 453 with cid 107970"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"107970\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_107970_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"107970"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_107970_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_107970_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_107970_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "449 completed."
[1] NA
[1] "Running query idx 454 with cid 3354"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3354\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3354_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3354"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3354_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3354_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3354_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "450 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 455 with cid 3356"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3356\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3356_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3356"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3356_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3356_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3356_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "451 completed."
[1] NA
[1] "Running query idx 456 with cid 21319"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"21319\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_21319_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"21319"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_21319_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_21319_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_21319_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "452 completed."
[1] NA
[1] "Running query idx 457 with cid 3365"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3365\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3365_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3365"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3365_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3365_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3365_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "453 completed."
[1] NA
[1] "Running query idx 458 with cid 657237"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"657237\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_657237_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"657237"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_657237_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_657237_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_657237_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "454 completed."
[1] NA
[1] "Running query idx 459 with cid 31378"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"31378\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_31378_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"31378"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_31378_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_31378_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_31378_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "455 completed."
[1] NA
[1] "Running query idx 460 with cid 941361"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"941361\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_941361_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"941361"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_941361_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_941361_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_941361_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "456 completed."
[1] NA
[1] "Running query idx 461 with cid 3380"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3380\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3380_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3380_transformations: download successful"
$TP_File_Name
[1] "CID_3380_transformations.csv"

$TP_Unique_CIDs
[1] 92294

[1] "457 completed."
[1] 92294
[1] "Running query idx 462 with cid 16850"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16850\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16850_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16850"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16850_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16850_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16850_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "458 completed."
[1] NA
[1] "Running query idx 463 with cid 107730"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"107730\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_107730_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"107730"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_107730_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_107730_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_107730_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "459 completed."
[1] NA
[1] "Running query idx 464 with cid 9878"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9878\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9878_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9878"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9878_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9878_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9878_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "460 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 465 with cid 3385"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3385\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3385_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3385"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3385_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3385_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3385_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "461 completed."
[1] NA
[1] "Running query idx 466 with cid 3386"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3386\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3386_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3386_transformations: download successful"
$TP_File_Name
[1] "CID_3386_transformations.csv"

$TP_Unique_CIDs
[1] 4541

[1] "462 completed."
[1] 4541
[1] "Running query idx 467 with cid 5281881"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281881\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281881_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281881"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281881_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281881_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281881_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "463 completed."
[1] NA
[1] "Running query idx 468 with cid 5281878"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281878\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281878_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281878"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281878_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281878_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281878_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "464 completed."
[1] NA
[1] "Running query idx 469 with cid 17012"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"17012\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_17012_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"17012"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_17012_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_17012_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_17012_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "465 completed."
[1] NA
[1] "Running query idx 470 with cid 11794741"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11794741\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11794741_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11794741"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11794741_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11794741_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11794741_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "466 completed."
[1] NA
[1] "Running query idx 471 with cid 3394"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3394\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3394_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3394"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3394_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3394_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3394_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "467 completed."
[1] NA
[1] "Running query idx 472 with cid 3396"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3396\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3396_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3396"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3396_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3396_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3396_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "468 completed."
[1] NA
[1] "Running query idx 473 with cid 3397"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3397\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3397_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3397"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3397_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3397_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3397_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "469 completed."
[1] NA
[1] "Running query idx 474 with cid 10107393"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"10107393\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_10107393_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"10107393"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_10107393_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_10107393_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_10107393_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "470 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 475 with cid 5311101"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311101\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311101_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311101"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311101_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311101_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311101_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "471 completed."
[1] NA
[1] "Running query idx 476 with cid 4659387"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4659387\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4659387_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4659387"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4659387_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4659387_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4659387_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "472 completed."
[1] NA
[1] "Running query idx 477 with cid 62924"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"62924\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_62924_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"62924"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_62924_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_62924_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_62924_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "473 completed."
[1] NA
[1] "Running query idx 478 with cid 24847768"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24847768\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24847768_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24847768"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24847768_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24847768_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24847768_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "474 completed."
[1] NA
[1] "Running query idx 479 with cid 134687786"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134687786\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134687786_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134687786"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134687786_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134687786_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134687786_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "475 completed."
[1] NA
[1] "Running query idx 480 with cid 446155"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"446155\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_446155_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"446155"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_446155_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_446155_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_446155_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "476 completed."
[1] NA
[1] "Running query idx 481 with cid 1548972"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1548972\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1548972_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1548972"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1548972_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1548972_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1548972_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "477 completed."
[1] NA
[1] "Running query idx 482 with cid 5353627"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5353627\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5353627_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5353627"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5353627_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5353627_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5353627_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "478 completed."
[1] NA
[1] "Running query idx 483 with cid 3403"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3403\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3403_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3403"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3403_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3403_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3403_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "479 completed."
[1] NA
[1] "Running query idx 484 with cid 6347538"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6347538\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6347538_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6347538"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6347538_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6347538_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6347538_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "480 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 485 with cid 5324346"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5324346\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5324346_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5324346"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5324346_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5324346_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5324346_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "481 completed."
[1] NA
[1] "Running query idx 486 with cid 135398658"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398658\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398658_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398658"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398658_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398658_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398658_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "482 completed."
[1] NA
[1] "Running query idx 487 with cid 5282448"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5282448\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5282448_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5282448"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5282448_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5282448_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5282448_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "483 completed."
[1] NA
[1] "Running query idx 488 with cid 3083544"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3083544\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3083544_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3083544"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3083544_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3083544_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3083544_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "484 completed."
[1] NA
[1] "Running query idx 489 with cid 3410"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3410\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3410_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3410"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3410_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3410_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3410_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "485 completed."
[1] NA
[1] "Running query idx 490 with cid 3034756"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3034756\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3034756_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3034756"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3034756_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3034756_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3034756_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "486 completed."
[1] NA
[1] "Running query idx 491 with cid 131536"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"131536\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_131536_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"131536"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_131536_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_131536_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_131536_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "487 completed."
[1] NA
[1] "Running query idx 492 with cid 3415"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3415\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3415_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3415"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3415_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3415_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3415_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "488 completed."
[1] NA
[1] "Running query idx 493 with cid 446987"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"446987\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_446987_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"446987"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_446987_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_446987_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_446987_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "489 completed."
[1] NA
[1] "Running query idx 494 with cid 25162944"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25162944\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25162944_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25162944"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25162944_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25162944_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25162944_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "490 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 495 with cid 25244760"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25244760\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25244760_transformations.csv\"}"
Error in readLines(con, n = 1): Couldn't connect to server
Traceback:

1. getPcCand.trans(query_idex_cns_cids[query_idex_cns_cids$idx == 
 .     i, "cid"])
2. readLines(con, n = 1)
In [21]:
start_n <- 491 #rowname
chunks <- split(query_idex_cns_cids$idx[start_n:length(query_idex_cns_cids$idx)], ceiling(seq_along(query_idex_cns_cids$idx[start_n:length(query_idex_cns_cids$idx)])/10))
In [22]:
start.time <- Sys.time()
n_requests <- 0
n_tps <- list()

for (j in chunks){
  for (i in j){
    print(paste0("Running query idx ", i, " with cid ", query_idex_cns_cids[query_idex_cns_cids$idx==i,"cid"]))
    cids_successors <- getPcCand.trans(query_idex_cns_cids[query_idex_cns_cids$idx==i,"cid"]) 
    n_requests <- n_requests + 1
    print(paste0(n_requests," completed."))
    print(cids_successors)
    if (is.na(cids_successors)) {  
      n_tps[[i]] <- 0
    } else {
      n_tps[[i]] <- length(cids_successors)
    }
  }
  print("pause for 20 seconds ")
  Sys.sleep(20)
}

end.time <- Sys.time()
time.taken <- end.time - start.time
time.taken
[1] "Running query idx 495 with cid 25244760"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25244760\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25244760_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25244760"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25244760_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25244760_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25244760_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "1 completed."
[1] NA
[1] "Running query idx 496 with cid 6992020"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6992020\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6992020_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6992020"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6992020_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6992020_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6992020_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "2 completed."
[1] NA
[1] "Running query idx 497 with cid 55891"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"55891\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_55891_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"55891"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_55891_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_55891_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_55891_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "3 completed."
[1] NA
[1] "Running query idx 498 with cid 9601226"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9601226\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9601226_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9601226"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9601226_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9601226_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9601226_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "4 completed."
[1] NA
[1] "Running query idx 499 with cid 3420"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3420\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3420_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3420"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3420_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3420_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3420_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "5 completed."
[1] NA
[1] "Running query idx 500 with cid 6708482"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6708482\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6708482_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6708482"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6708482_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6708482_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6708482_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "6 completed."
[1] NA
[1] "Running query idx 501 with cid 58666458"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"58666458\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_58666458_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"58666458"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_58666458_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_58666458_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_58666458_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "7 completed."
[1] NA
[1] "Running query idx 502 with cid 45357796"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"45357796\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_45357796_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"45357796"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_45357796_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_45357796_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_45357796_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "8 completed."
[1] NA
[1] "Running query idx 503 with cid 9872634"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9872634\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9872634_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9872634"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9872634_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9872634_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9872634_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "9 completed."
[1] NA
[1] "Running query idx 504 with cid 134715568"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134715568\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134715568_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134715568"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134715568_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134715568_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134715568_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "10 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 505 with cid 146160312"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"146160312\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_146160312_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"146160312"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_146160312_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_146160312_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_146160312_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "11 completed."
[1] NA
[1] "Running query idx 506 with cid 8378"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"8378\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_8378_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"8378"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_8378_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_8378_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_8378_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "12 completed."
[1] NA
[1] "Running query idx 507 with cid 77992"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"77992\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_77992_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"77992"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_77992_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_77992_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_77992_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "13 completed."
[1] NA
[1] "Running query idx 508 with cid 104741"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"104741\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_104741_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"104741"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_104741_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_104741_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_104741_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "14 completed."
[1] NA
[1] "Running query idx 509 with cid 3440"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3440\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3440_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3440"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3440_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3440_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3440_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "15 completed."
[1] NA
[1] "Running query idx 510 with cid 3000226"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3000226\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3000226_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3000226"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3000226_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3000226_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3000226_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "16 completed."
[1] NA
[1] "Running query idx 511 with cid 3446"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3446\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3446_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3446_transformations: download successful"
$TP_File_Name
[1] "CID_3446_transformations.csv"

$TP_Unique_CIDs
[1] 260003

[1] "17 completed."
[1] 260003
[1] "Running query idx 512 with cid 60714"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60714\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60714_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60714"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60714_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60714_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60714_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "18 completed."
[1] NA
[1] "Running query idx 513 with cid 44144429"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44144429\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44144429_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44144429"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44144429_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44144429_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44144429_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "19 completed."
[1] NA
[1] "Running query idx 514 with cid 92043200"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"92043200\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_92043200_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"92043200"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_92043200_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_92043200_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_92043200_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "20 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 515 with cid 60715"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60715\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60715_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60715"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60715_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60715_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60715_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "21 completed."
[1] NA
[1] "Running query idx 516 with cid 134819269"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134819269\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134819269_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134819269"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134819269_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134819269_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134819269_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "22 completed."
[1] NA
[1] "Running query idx 517 with cid 60148448"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60148448\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60148448_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60148448"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60148448_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60148448_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60148448_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "23 completed."
[1] NA
[1] "Running query idx 518 with cid 129009859"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129009859\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129009859_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129009859"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129009859_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129009859_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129009859_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "24 completed."
[1] NA
[1] "Running query idx 519 with cid 16757547"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16757547\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16757547_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16757547"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16757547_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16757547_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16757547_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "25 completed."
[1] NA
[1] "Running query idx 520 with cid 24838311"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24838311\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24838311_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24838311"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24838311_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24838311_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24838311_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "26 completed."
[1] NA
[1] "Running query idx 521 with cid 9651"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9651\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9651_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9651"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9651_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9651_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9651_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "27 completed."
[1] NA
[1] "Running query idx 522 with cid 135398740"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398740\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398740_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398740"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398740_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398740_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398740_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "28 completed."
[1] NA
[1] "Running query idx 523 with cid 123631"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"123631\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_123631_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"123631"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_123631_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_123631_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_123631_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "29 completed."
[1] NA
[1] "Running query idx 524 with cid 60750"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60750\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60750_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60750_transformations: download successful"
$TP_File_Name
[1] "CID_60750_transformations.csv"

$TP_Unique_CIDs
[1] 13922189

[1] "30 completed."
[1] 13922189
[1] "pause for 20 seconds "
[1] "Running query idx 525 with cid 3033968"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3033968\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3033968_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3033968"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3033968_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3033968_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3033968_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "31 completed."
[1] NA
[1] "Running query idx 526 with cid 3081884"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3081884\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3081884_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3081884"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3081884_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3081884_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3081884_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "32 completed."
[1] NA
[1] "Running query idx 527 with cid 3488"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3488\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3488_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3488"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3488_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3488_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3488_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "33 completed."
[1] NA
[1] "Running query idx 528 with cid 3475"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3475\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3475_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3475"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3475_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3475_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3475_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "34 completed."
[1] NA
[1] "Running query idx 529 with cid 3476"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3476\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3476_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3476"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3476_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3476_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3476_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "35 completed."
[1] NA
[1] "Running query idx 530 with cid 3478"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3478\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3478_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3478"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3478_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3478_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3478_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "36 completed."
[1] NA
[1] "Running query idx 531 with cid 91610"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"91610\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_91610_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"91610"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_91610_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_91610_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_91610_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "37 completed."
[1] NA
[1] "Running query idx 532 with cid 439213"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"439213\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_439213_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"439213"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_439213_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_439213_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_439213_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "38 completed."
[1] NA
[1] "Running query idx 533 with cid 4510"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4510\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4510_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4510"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4510_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4510_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4510_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "39 completed."
[1] NA
[1] "Running query idx 534 with cid 11693"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11693\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11693_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11693"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11693_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11693_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11693_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "40 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 535 with cid 5311128"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311128\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311128_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311128"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311128_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311128_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311128_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "41 completed."
[1] NA
[1] "Running query idx 536 with cid 3516"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3516\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3516_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3516"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3516_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3516_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3516_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "42 completed."
[1] NA
[1] "Running query idx 537 with cid 3519"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3519\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3519_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3519"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3519_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3519_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3519_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "43 completed."
[1] NA
[1] "Running query idx 538 with cid 3559"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3559\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3559_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3559"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3559_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3559_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3559_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "44 completed."
[1] NA
[1] "Running query idx 539 with cid 65130"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65130\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65130_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65130"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65130_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65130_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65130_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "45 completed."
[1] NA
[1] "Running query idx 540 with cid 3607"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3607\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3607_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3607"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3607_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3607_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3607_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "46 completed."
[1] NA
[1] "Running query idx 541 with cid 3639"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3639\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3639_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3639_transformations: download successful"
$TP_File_Name
[1] "CID_3639_transformations.csv"

$TP_Unique_CIDs
[1]  2720 67136

[1] "47 completed."
[1]  2720 67136
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 542 with cid 5754"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5754\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5754_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5754_transformations: download successful"
$TP_File_Name
[1] "CID_5754_transformations.csv"

$TP_Unique_CIDs
[1] 222786

[1] "48 completed."
[1] 222786
[1] "Running query idx 543 with cid 26133"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"26133\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_26133_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"26133"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_26133_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_26133_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_26133_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "49 completed."
[1] NA
[1] "Running query idx 544 with cid 5284570"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284570\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284570_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284570"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284570_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284570_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284570_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "50 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 545 with cid 70689311"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"70689311\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_70689311_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"70689311"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_70689311_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_70689311_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_70689311_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "51 completed."
[1] NA
[1] "Running query idx 546 with cid 44475014"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44475014\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44475014_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44475014"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44475014_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44475014_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44475014_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "52 completed."
[1] NA
[1] "Running query idx 547 with cid 45357193"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"45357193\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_45357193_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"45357193"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_45357193_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_45357193_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_45357193_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "53 completed."
[1] NA
[1] "Running query idx 548 with cid 92132748"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"92132748\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_92132748_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"92132748"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_92132748_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_92132748_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_92132748_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "54 completed."
[1] NA
[1] "Running query idx 549 with cid 50935334"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"50935334\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_50935334_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"50935334"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_50935334_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_50935334_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_50935334_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "55 completed."
[1] NA
[1] "Running query idx 550 with cid 70678542"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"70678542\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_70678542_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"70678542"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_70678542_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_70678542_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_70678542_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "56 completed."
[1] NA
[1] "Running query idx 551 with cid 24892771"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24892771\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24892771_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24892771"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24892771_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24892771_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24892771_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "57 completed."
[1] NA
[1] "Running query idx 552 with cid 16056828"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16056828\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16056828_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16056828"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16056828_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16056828_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16056828_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "58 completed."
[1] NA
[1] "Running query idx 553 with cid 24836902"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24836902\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24836902_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24836902"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24836902_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24836902_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24836902_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "59 completed."
[1] NA
[1] "Running query idx 554 with cid 71774773"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71774773\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71774773_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71774773"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71774773_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71774773_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71774773_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "60 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 555 with cid 6474319"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6474319\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6474319_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6474319"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6474319_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6474319_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6474319_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "61 completed."
[1] NA
[1] "Running query idx 556 with cid 134820153"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134820153\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134820153_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134820153"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134820153_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134820153_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134820153_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "62 completed."
[1] NA
[1] "Running query idx 557 with cid 129893562"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129893562\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129893562_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129893562"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129893562_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129893562_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129893562_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "63 completed."
[1] NA
[1] "Running query idx 558 with cid 146156970"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"146156970\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_146156970_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"146156970"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_146156970_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_146156970_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_146156970_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "64 completed."
[1] NA
[1] "Running query idx 559 with cid 146014417"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"146014417\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_146014417_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"146014417"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_146014417_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_146014417_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_146014417_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "65 completed."
[1] NA
[1] "Running query idx 560 with cid 3657"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3657\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3657_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3657"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3657_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3657_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3657_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "66 completed."
[1] NA
[1] "Running query idx 561 with cid 3652"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3652\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3652_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3652"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3652_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3652_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3652_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "67 completed."
[1] NA
[1] "Running query idx 562 with cid 3658"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3658\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3658_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3658"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3658_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3658_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3658_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "68 completed."
[1] NA
[1] "Running query idx 563 with cid 24821094"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24821094\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24821094_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24821094"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24821094_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24821094_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24821094_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "69 completed."
[1] NA
[1] "Running query idx 564 with cid 3672"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3672\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3672_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3672"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3672_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3672_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3672_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "70 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 565 with cid 6918173"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918173\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918173_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918173"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918173_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918173_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918173_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "71 completed."
[1] NA
[1] "Running query idx 566 with cid 71364"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71364\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71364_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71364"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71364_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71364_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71364_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "72 completed."
[1] NA
[1] "Running query idx 567 with cid 14724482"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"14724482\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_14724482_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"14724482"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_14724482_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_14724482_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_14724482_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "73 completed."
[1] NA
[1] "Running query idx 568 with cid 90488794"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"90488794\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_90488794_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"90488794"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_90488794_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_90488794_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_90488794_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "74 completed."
[1] NA
[1] "Running query idx 569 with cid 137705994"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137705994\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137705994_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137705994"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137705994_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137705994_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137705994_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "75 completed."
[1] NA
[1] "Running query idx 570 with cid 42890"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"42890\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_42890_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"42890"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_42890_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_42890_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_42890_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "76 completed."
[1] NA
[1] "Running query idx 571 with cid 3686"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3686\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3686_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3686"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3686_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3686_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3686_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "77 completed."
[1] NA
[1] "Running query idx 572 with cid 3690"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3690\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3690_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3690"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3690_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3690_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3690_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "78 completed."
[1] NA
[1] "Running query idx 573 with cid 5311181"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311181\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311181_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311181"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311181_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311181_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311181_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "79 completed."
[1] NA
[1] "Running query idx 574 with cid 6435378"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6435378\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6435378_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6435378"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6435378_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6435378_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6435378_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "80 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 575 with cid 53394043"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53394043\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53394043_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53394043"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53394043_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53394043_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53394043_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "81 completed."
[1] NA
[1] "Running query idx 576 with cid 53486260"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53486260\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53486260_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53486260"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53486260_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53486260_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53486260_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "82 completed."
[1] NA
[1] "Running query idx 577 with cid 20838499"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"20838499\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_20838499_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"20838499"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_20838499_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_20838499_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_20838499_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "83 completed."
[1] NA
[1] "Running query idx 578 with cid 89077401"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"89077401\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_89077401_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"89077401"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_89077401_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_89077401_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_89077401_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "84 completed."
[1] NA
[1] "Running query idx 579 with cid 51397006"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"51397006\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_51397006_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"51397006"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_51397006_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_51397006_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_51397006_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "85 completed."
[1] NA
[1] "Running query idx 580 with cid 6435293"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6435293\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6435293_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6435293"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6435293_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6435293_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6435293_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "86 completed."
[1] NA
[1] "Running query idx 581 with cid 54313"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54313\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54313_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54313"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54313_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54313_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54313_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "87 completed."
[1] NA
[1] "Running query idx 582 with cid 91746214"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"91746214\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_91746214_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"91746214"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_91746214_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_91746214_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_91746214_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "88 completed."
[1] NA
[1] "Running query idx 583 with cid 134694981"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134694981\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134694981_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134694981"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134694981_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134694981_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134694981_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "89 completed."
[1] NA
[1] "Running query idx 584 with cid 137705059"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137705059\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137705059_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137705059"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137705059_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137705059_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137705059_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "90 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 585 with cid 5291"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5291\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5291_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5291"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5291_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5291_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5291_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "91 completed."
[1] NA
[1] "Running query idx 586 with cid 104838"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"104838\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_104838_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"104838"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_104838_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_104838_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_104838_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "92 completed."
[1] NA
[1] "Running query idx 587 with cid 57469"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"57469\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_57469_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"57469"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_57469_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_57469_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_57469_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "93 completed."
[1] NA
[1] "Running query idx 588 with cid 6918554"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918554\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918554_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918554"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918554_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918554_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918554_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "94 completed."
[1] NA
[1] "Running query idx 589 with cid 3702"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3702\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3702_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3702"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3702_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3702_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3702_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "95 completed."
[1] NA
[1] "Running query idx 590 with cid 3715"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3715\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3715_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3715"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3715_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3715_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3715_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "96 completed."
[1] NA
[1] "Running query idx 591 with cid 65985"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65985\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65985_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65985"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65985_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65985_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65985_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "97 completed."
[1] NA
[1] "Running query idx 592 with cid 3724"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3724\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3724_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3724"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3724_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3724_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3724_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "98 completed."
[1] NA
[1] "Running query idx 593 with cid 3730"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3730\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3730_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3730"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3730_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3730_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3730_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "99 completed."
[1] NA
[1] "Running query idx 594 with cid 3731"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3731\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3731_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3731"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3731_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3731_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3731_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "100 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 595 with cid 3736"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3736\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3736_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3736"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3736_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3736_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3736_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "101 completed."
[1] NA
[1] "Running query idx 596 with cid 3741"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3741\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3741_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3741"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3741_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3741_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3741_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "102 completed."
[1] NA
[1] "Running query idx 597 with cid 34536"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"34536\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_34536_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"34536"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_34536_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_34536_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_34536_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "103 completed."
[1] NA
[1] "Running query idx 598 with cid 657308"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"657308\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_657308_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"657308"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_657308_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_657308_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_657308_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "104 completed."
[1] NA
[1] "Running query idx 599 with cid 31098"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"31098\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_31098_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"31098"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_31098_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_31098_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_31098_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "105 completed."
[1] NA
[1] "Running query idx 600 with cid 5702073"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5702073\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5702073_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5702073"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5702073_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5702073_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5702073_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "106 completed."
[1] NA
[1] "Running query idx 601 with cid 11553369"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11553369\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11553369_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11553369"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11553369_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11553369_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11553369_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "107 completed."
[1] NA
[1] "Running query idx 602 with cid 124080907"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"124080907\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_124080907_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"124080907"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_124080907_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_124080907_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_124080907_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "108 completed."
[1] NA
[1] "Running query idx 603 with cid 3749"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3749\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3749_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3749_transformations: download successful"
$TP_File_Name
[1] "CID_3749_transformations.csv"

$TP_Unique_CIDs
[1] 19388302

[1] "109 completed."
[1] 19388302
[1] "Running query idx 604 with cid 60838"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60838\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60838_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60838"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60838_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60838_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60838_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "110 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 605 with cid 6918485"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918485\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918485_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918485"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918485_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918485_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918485_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "111 completed."
[1] NA
[1] "Running query idx 606 with cid 3760"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3760\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3760_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3760"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3760_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3760_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3760_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "112 completed."
[1] NA
[1] "Running query idx 607 with cid 3767"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3767\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3767_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3767"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3767_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3767_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3767_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "113 completed."
[1] NA
[1] "Running query idx 608 with cid 3779"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3779\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3779_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3779"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3779_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3779_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3779_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "114 completed."
[1] NA
[1] "Running query idx 609 with cid 6883"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6883\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6883_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6883"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6883_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6883_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6883_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "115 completed."
[1] NA
[1] "Running query idx 610 with cid 3781"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3781\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3781_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3781"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3781_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3781_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3781_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "116 completed."
[1] NA
[1] "Running query idx 611 with cid 5282379"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5282379\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5282379_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5282379"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5282379_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5282379_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5282379_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "117 completed."
[1] NA
[1] "Running query idx 612 with cid 3793"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3793\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3793_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3793"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3793_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3793_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3793_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "118 completed."
[1] NA
[1] "Running query idx 613 with cid 55283"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"55283\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_55283_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"55283"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_55283_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_55283_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_55283_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "119 completed."
[1] NA
[1] "Running query idx 614 with cid 6917738"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6917738\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6917738_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6917738"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6917738_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6917738_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6917738_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "120 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 615 with cid 14179013"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"14179013\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_14179013_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"14179013"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_14179013_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_14179013_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_14179013_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "121 completed."
[1] NA
[1] "Running query idx 616 with cid 45039617"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"45039617\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_45039617_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"45039617"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_45039617_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_45039617_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_45039617_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "122 completed."
[1] NA
[1] "Running query idx 617 with cid 14179008"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"14179008\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_14179008_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"14179008"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_14179008_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_14179008_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_14179008_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "123 completed."
[1] NA
[1] "Running query idx 618 with cid 132999"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"132999\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_132999_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"132999"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_132999_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_132999_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_132999_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "124 completed."
[1] NA
[1] "Running query idx 619 with cid 16220172"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16220172\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16220172_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16220172"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16220172_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16220172_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16220172_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "125 completed."
[1] NA
[1] "Running query idx 620 with cid 3821"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3821\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3821_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3821"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3821_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3821_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3821_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "126 completed."
[1] NA
[1] "Running query idx 621 with cid 456201"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"456201\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_456201_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"456201"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_456201_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_456201_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_456201_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "127 completed."
[1] NA
[1] "Running query idx 622 with cid 47576"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"47576\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_47576_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"47576"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_47576_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_47576_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_47576_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "128 completed."
[1] NA
[1] "Running query idx 623 with cid 3823"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3823\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3823_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3823"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3823_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3823_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3823_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "129 completed."
[1] NA
[1] "Running query idx 624 with cid 5702077"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5702077\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5702077_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5702077"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5702077_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5702077_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5702077_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "130 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 625 with cid 16757695"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16757695\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16757695_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16757695"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16757695_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16757695_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16757695_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "131 completed."
[1] NA
[1] "Running query idx 626 with cid 73951506"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"73951506\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_73951506_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"73951506"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_73951506_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_73951506_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_73951506_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "132 completed."
[1] NA
[1] "Running query idx 627 with cid 3825"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3825\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3825_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3825"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3825_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3825_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3825_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "133 completed."
[1] NA
[1] "Running query idx 628 with cid 3826"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3826\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3826_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3826"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3826_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3826_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3826_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "134 completed."
[1] NA
[1] "Running query idx 629 with cid 3827"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3827\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3827_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3827"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3827_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3827_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3827_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "135 completed."
[1] NA
[1] "Running query idx 630 with cid 3869"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3869\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3869_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3869"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3869_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3869_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3869_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "136 completed."
[1] NA
[1] "Running query idx 631 with cid 219078"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"219078\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_219078_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"219078"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_219078_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_219078_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_219078_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "137 completed."
[1] NA
[1] "Running query idx 632 with cid 157355"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"157355\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_157355_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"157355"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_157355_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_157355_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_157355_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "138 completed."
[1] NA
[1] "Running query idx 633 with cid 11333"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11333\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11333_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11333"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11333_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11333_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11333_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "139 completed."
[1] NA
[1] "Running query idx 634 with cid 3872"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3872\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3872_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3872"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3872_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3872_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3872_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "140 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 635 with cid 16217605"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16217605\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16217605_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16217605"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16217605_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16217605_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16217605_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "141 completed."
[1] NA
[1] "Running query idx 636 with cid 11024312"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11024312\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11024312_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11024312"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11024312_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11024312_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11024312_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "142 completed."
[1] NA
[1] "Running query idx 637 with cid 16760534"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16760534\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16760534_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16760534"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16760534_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16760534_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16760534_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "143 completed."
[1] NA
[1] "Running query idx 638 with cid 131839611"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"131839611\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_131839611_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"131839611"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_131839611_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_131839611_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_131839611_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "144 completed."
[1] NA
[1] "Running query idx 639 with cid 60825"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60825\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60825_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60825"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60825_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60825_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60825_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "145 completed."
[1] NA
[1] "Running query idx 640 with cid 3878"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3878\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3878_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3878"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3878_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3878_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3878_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "146 completed."
[1] NA
[1] "Running query idx 641 with cid 71349"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71349\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71349_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71349"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71349_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71349_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71349_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "147 completed."
[1] NA
[1] "Running query idx 642 with cid 6918011"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918011\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918011_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918011"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918011_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918011_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918011_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "148 completed."
[1] NA
[1] "Running query idx 643 with cid 122173799"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"122173799\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_122173799_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"122173799"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_122173799_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_122173799_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_122173799_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "149 completed."
[1] NA
[1] "Running query idx 644 with cid 138393800"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"138393800\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_138393800_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"138393800"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_138393800_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_138393800_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_138393800_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "150 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 645 with cid 134694358"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134694358\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134694358_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134694358"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134694358_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134694358_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134694358_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "151 completed."
[1] NA
[1] "Running query idx 646 with cid 44270249"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44270249\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44270249_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44270249"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44270249_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44270249_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44270249_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "152 completed."
[1] NA
[1] "Running query idx 647 with cid 3883"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3883\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3883_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3883"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3883_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3883_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3883_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "153 completed."
[1] NA
[1] "Running query idx 648 with cid 208908"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"208908\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_208908_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"208908"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_208908_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_208908_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_208908_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "154 completed."
[1] NA
[1] "Running query idx 649 with cid 5311221"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311221\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311221_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311221"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311221_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311221_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311221_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "155 completed."
[1] NA
[1] "Running query idx 650 with cid 3899"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3899\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3899_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3899"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3899_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3899_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3899_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "156 completed."
[1] NA
[1] "Running query idx 651 with cid 216326"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"216326\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_216326_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"216326"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_216326_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_216326_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_216326_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "157 completed."
[1] NA
[1] "Running query idx 652 with cid 9823820"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9823820\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9823820_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9823820"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9823820_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9823820_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9823820_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "158 completed."
[1] NA
[1] "Running query idx 653 with cid 65866"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65866\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65866_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65866"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65866_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65866_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65866_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "159 completed."
[1] NA
[1] "Running query idx 654 with cid 3902"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3902\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3902_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3902"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3902_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3902_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3902_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "160 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 655 with cid 657181"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"657181\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_657181_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"657181"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_657181_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_657181_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_657181_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "161 completed."
[1] NA
[1] "Running query idx 656 with cid 5284583"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284583\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284583_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284583"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284583_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284583_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284583_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "162 completed."
[1] NA
[1] "Running query idx 657 with cid 39468"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"39468\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_39468_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"39468"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_39468_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_39468_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_39468_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "163 completed."
[1] NA
[1] "Running query idx 658 with cid 92253"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"92253\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_92253_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"92253"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_92253_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_92253_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_92253_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "164 completed."
[1] NA
[1] "Running query idx 659 with cid 54385"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54385\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54385_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54385"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54385_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54385_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54385_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "165 completed."
[1] NA
[1] "Running query idx 660 with cid 10917"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"10917\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_10917_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"10917"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_10917_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_10917_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_10917_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "166 completed."
[1] NA
[1] "Running query idx 661 with cid 1549000"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1549000\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1549000_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1549000_transformations: download successful"
$TP_File_Name
[1] "CID_1549000_transformations.csv"

$TP_Unique_CIDs
[1]     8653 45038602     9340

[1] "167 completed."
[1]     8653 45038602     9340
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 662 with cid 6047"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6047\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6047_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6047"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6047_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6047_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6047_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "168 completed."
[1] NA
[1] "Running query idx 663 with cid 65859"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65859\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65859_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65859"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65859_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65859_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65859_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "169 completed."
[1] NA
[1] "Running query idx 664 with cid 149096"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"149096\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_149096_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"149096"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_149096_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_149096_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_149096_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "170 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 665 with cid 72287"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"72287\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_72287_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"72287"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_72287_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_72287_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_72287_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "171 completed."
[1] NA
[1] "Running query idx 666 with cid 13109"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"13109\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_13109_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"13109"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_13109_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_13109_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_13109_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "172 completed."
[1] NA
[1] "Running query idx 667 with cid 5819"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5819\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5819_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5819"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5819_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5819_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5819_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "173 completed."
[1] NA
[1] "Running query idx 668 with cid 23666112"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23666112\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23666112_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23666112"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23666112_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23666112_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23666112_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "174 completed."
[1] NA
[1] "Running query idx 669 with cid 5819"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5819\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5819_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5819"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5819_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5819_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5819_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "175 completed."
[1] NA
[1] "Running query idx 670 with cid 23667619"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23667619\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23667619_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23667619"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23667619_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23667619_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23667619_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "176 completed."
[1] NA
[1] "Running query idx 671 with cid 78759348"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"78759348\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_78759348_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"78759348"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_78759348_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_78759348_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_78759348_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "177 completed."
[1] NA
[1] "Running query idx 672 with cid 9832253"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9832253\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9832253_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9832253"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9832253_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9832253_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9832253_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "178 completed."
[1] NA
[1] "Running query idx 673 with cid 23615408"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23615408\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23615408_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23615408"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23615408_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23615408_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23615408_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "179 completed."
[1] NA
[1] "Running query idx 674 with cid 3676"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3676\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3676_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3676_transformations: download successful"
$TP_File_Name
[1] "CID_3676_transformations.csv"

$TP_Unique_CIDs
[1]   24415 3036923    3676

[1] "180 completed."
[1]   24415 3036923    3676
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "pause for 20 seconds "
[1] "Running query idx 675 with cid 16158208"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16158208\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16158208_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16158208"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16158208_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16158208_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16158208_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "181 completed."
[1] NA
[1] "Running query idx 676 with cid 57458936"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"57458936\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_57458936_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"57458936"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_57458936_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_57458936_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_57458936_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "182 completed."
[1] NA
[1] "Running query idx 677 with cid 92044408"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"92044408\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_92044408_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"92044408"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_92044408_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_92044408_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_92044408_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "183 completed."
[1] NA
[1] "Running query idx 678 with cid 137795475"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137795475\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137795475_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137795475"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137795475_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137795475_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137795475_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "184 completed."
[1] NA
[1] "Running query idx 679 with cid 137699188"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137699188\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137699188_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137699188"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137699188_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137699188_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137699188_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "185 completed."
[1] NA
[1] "Running query idx 680 with cid 138455101"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"138455101\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_138455101_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"138455101"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_138455101_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_138455101_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_138455101_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "186 completed."
[1] NA
[1] "Running query idx 681 with cid 131673845"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"131673845\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_131673845_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"131673845"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_131673845_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_131673845_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_131673845_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "187 completed."
[1] NA
[1] "Running query idx 682 with cid 3000540"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3000540\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3000540_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3000540"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3000540_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3000540_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3000540_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "188 completed."
[1] NA
[1] "Running query idx 683 with cid 441401"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"441401\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_441401_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"441401"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_441401_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_441401_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_441401_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "189 completed."
[1] NA
[1] "Running query idx 684 with cid 5920"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5920\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5920_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5920"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5920_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5920_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5920_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "190 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 685 with cid 16134956"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16134956\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16134956_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16134956"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16134956_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16134956_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16134956_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "191 completed."
[1] NA
[1] "Running query idx 686 with cid 91978180"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"91978180\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_91978180_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"91978180"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_91978180_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_91978180_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_91978180_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "192 completed."
[1] NA
[1] "Running query idx 687 with cid 131709229"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"131709229\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_131709229_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"131709229"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_131709229_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_131709229_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_131709229_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "193 completed."
[1] NA
[1] "Running query idx 688 with cid 5362119"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5362119\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5362119_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5362119"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5362119_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5362119_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5362119_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "194 completed."
[1] NA
[1] "Running query idx 689 with cid 10197702"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"10197702\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_10197702_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"10197702"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_10197702_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_10197702_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_10197702_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "195 completed."
[1] NA
[1] "Running query idx 690 with cid 25021852"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25021852\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25021852_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25021852"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25021852_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25021852_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25021852_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "196 completed."
[1] NA
[1] "Running query idx 691 with cid 65248"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65248\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65248_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65248"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65248_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65248_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65248_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "197 completed."
[1] NA
[1] "Running query idx 692 with cid 44564"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44564\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44564_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44564"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44564_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44564_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44564_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "198 completed."
[1] NA
[1] "Running query idx 693 with cid 3955"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3955\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3955_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3955"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3955_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3955_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3955_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "199 completed."
[1] NA
[1] "Running query idx 694 with cid 92727"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"92727\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_92727_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"92727"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_92727_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_92727_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_92727_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "200 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 695 with cid 3033860"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3033860\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3033860_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3033860"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3033860_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3033860_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3033860_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "201 completed."
[1] NA
[1] "Running query idx 696 with cid 3957"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3957\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3957_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3957"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3957_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3957_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3957_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "202 completed."
[1] NA
[1] "Running query idx 697 with cid 3958"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3958\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3958_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3958"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3958_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3958_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3958_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "203 completed."
[1] NA
[1] "Running query idx 698 with cid 13314"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"13314\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_13314_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"13314"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_13314_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_13314_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_13314_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "204 completed."
[1] NA
[1] "Running query idx 699 with cid 3961"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3961\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3961_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3961_transformations: download successful"
$TP_File_Name
[1] "CID_3961_transformations.csv"

$TP_Unique_CIDs
[1] 19388302

[1] "205 completed."
[1] 19388302
[1] "Running query idx 700 with cid 16678941"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16678941\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16678941_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16678941"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16678941_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16678941_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16678941_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "206 completed."
[1] NA
[1] "Running query idx 701 with cid 54707177"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54707177\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54707177_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54707177"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54707177_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54707177_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54707177_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "207 completed."
[1] NA
[1] "Running query idx 702 with cid 54714462"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54714462\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54714462_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54714462"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54714462_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54714462_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54714462_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "208 completed."
[1] NA
[1] "Running query idx 703 with cid 54687131"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54687131\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54687131_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54687131"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54687131_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54687131_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54687131_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "209 completed."
[1] NA
[1] "Running query idx 704 with cid 146160332"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"146160332\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_146160332_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"146160332"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_146160332_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_146160332_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_146160332_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "210 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 705 with cid 138113523"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"138113523\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_138113523_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"138113523"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_138113523_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_138113523_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_138113523_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "211 completed."
[1] NA
[1] "Running query idx 706 with cid 133562720"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"133562720\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_133562720_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"133562720"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_133562720_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_133562720_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_133562720_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "212 completed."
[1] NA
[1] "Running query idx 707 with cid 54724371"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54724371\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54724371_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54724371"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54724371_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54724371_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54724371_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "213 completed."
[1] NA
[1] "Running query idx 708 with cid 5857"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5857\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5857_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5857"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5857_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5857_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5857_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "214 completed."
[1] NA
[1] "Running query idx 709 with cid 16004692"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16004692\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16004692_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16004692"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16004692_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16004692_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16004692_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "215 completed."
[1] NA
[1] "Running query idx 710 with cid 174"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"174\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_174_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"174"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_174_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_174_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_174_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "216 completed."
[1] NA
[1] "Running query idx 712 with cid 4004"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4004\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4004_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4004"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4004_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4004_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4004_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "217 completed."
[1] NA
[1] "Running query idx 713 with cid 6251"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6251\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6251_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6251"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6251_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6251_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6251_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "218 completed."
[1] NA
[1] "Running query idx 714 with cid 3002977"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3002977\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3002977_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3002977"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3002977_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3002977_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3002977_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "219 completed."
[1] NA
[1] "Running query idx 715 with cid 4030"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4030\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4030_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4030"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4030_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4030_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4030_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "220 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 716 with cid 4031"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4031\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4031_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4031"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4031_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4031_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4031_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "221 completed."
[1] NA
[1] "Running query idx 717 with cid 4034"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4034\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4034_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4034_transformations: download successful"
$TP_File_Name
[1] "CID_4034_transformations.csv"

$TP_Unique_CIDs
[1] 8653 9340

[1] "222 completed."
[1] 8653 9340
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 718 with cid 10631"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"10631\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_10631_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"10631"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_10631_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_10631_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_10631_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "223 completed."
[1] NA
[1] "Running query idx 719 with cid 4046"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4046\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4046_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4046"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4046_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4046_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4046_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "224 completed."
[1] NA
[1] "Running query idx 720 with cid 40692"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"40692\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_40692_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"40692"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_40692_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_40692_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_40692_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "225 completed."
[1] NA
[1] "Running query idx 721 with cid 456309"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"456309\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_456309_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"456309"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_456309_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_456309_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_456309_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "226 completed."
[1] NA
[1] "Running query idx 722 with cid 3000506"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3000506\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3000506_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3000506"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3000506_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3000506_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3000506_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "227 completed."
[1] NA
[1] "Running query idx 723 with cid 3000516"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3000516\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3000516_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3000516"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3000516_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3000516_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3000516_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "228 completed."
[1] NA
[1] "Running query idx 724 with cid 12986439"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"12986439\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_12986439_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"12986439"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_12986439_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_12986439_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_12986439_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "229 completed."
[1] NA
[1] "Running query idx 725 with cid 19090"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"19090\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_19090_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"19090"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_19090_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_19090_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_19090_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "230 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 726 with cid 896"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"896\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_896_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"896"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_896_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_896_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_896_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "231 completed."
[1] NA
[1] "Running query idx 727 with cid 460612"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"460612\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_460612_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"460612"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_460612_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_460612_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_460612_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "232 completed."
[1] NA
[1] "Running query idx 728 with cid 4054"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4054\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4054_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4054"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4054_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4054_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4054_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "233 completed."
[1] NA
[1] "Running query idx 729 with cid 4062"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4062\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4062_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4062"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4062_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4062_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4062_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "234 completed."
[1] NA
[1] "Running query idx 730 with cid 6058"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6058\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6058_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6058"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6058_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6058_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6058_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "235 completed."
[1] NA
[1] "Running query idx 731 with cid 667490"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"667490\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_667490_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"667490"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_667490_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_667490_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_667490_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "236 completed."
[1] NA
[1] "Running query idx 732 with cid 441130"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"441130\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_441130_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"441130"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_441130_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_441130_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_441130_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "237 completed."
[1] NA
[1] "Running query idx 733 with cid 4075"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4075\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4075_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4075"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4075_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4075_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4075_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "238 completed."
[1] NA
[1] "Running query idx 734 with cid 23662354"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23662354\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23662354_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23662354"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23662354_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23662354_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23662354_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "239 completed."
[1] NA
[1] "Running query idx 735 with cid 15020"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"15020\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_15020_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"15020"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_15020_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_15020_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_15020_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "240 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 736 with cid 522325"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"522325\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_522325_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"522325"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_522325_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_522325_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_522325_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "241 completed."
[1] NA
[1] "Running query idx 737 with cid 4091"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4091\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4091_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4091_transformations: download successful"
$TP_File_Name
[1] "CID_4091_transformations.csv"

$TP_Unique_CIDs
[1] 8859

[1] "242 completed."
[1] 8859
[1] "Running query idx 738 with cid 4095"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4095\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4095_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4095_transformations: download successful"
$TP_File_Name
[1] "CID_4095_transformations.csv"

$TP_Unique_CIDs
[1] 5378015

[1] "243 completed."
[1] 5378015
[1] "Running query idx 739 with cid 126941"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"126941\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_126941_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"126941"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_126941_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_126941_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_126941_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "244 completed."
[1] NA
[1] "Running query idx 740 with cid 157922"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"157922\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_157922_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"157922"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_157922_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_157922_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_157922_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "245 completed."
[1] NA
[1] "Running query idx 741 with cid 8226"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"8226\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_8226_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"8226"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_8226_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_8226_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_8226_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "246 completed."
[1] NA
[1] "Running query idx 742 with cid 5361917"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5361917\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5361917_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5361917"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5361917_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5361917_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5361917_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "247 completed."
[1] NA
[1] "Running query idx 743 with cid 16089914"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16089914\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16089914_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16089914"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16089914_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16089914_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16089914_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "248 completed."
[1] NA
[1] "Running query idx 744 with cid 66577063"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"66577063\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_66577063_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"66577063"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_66577063_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_66577063_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_66577063_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "249 completed."
[1] NA
[1] "Running query idx 745 with cid 146018922"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"146018922\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_146018922_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"146018922"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_146018922_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_146018922_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_146018922_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "250 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 746 with cid 16088037"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16088037\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16088037_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16088037"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16088037_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16088037_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16088037_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "251 completed."
[1] NA
[1] "Running query idx 747 with cid 4158"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4158\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4158_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4158"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4158_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4158_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4158_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "252 completed."
[1] NA
[1] "Running query idx 748 with cid 6741"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6741\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6741_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6741"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6741_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6741_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6741_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "253 completed."
[1] NA
[1] "Running query idx 749 with cid 63019"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"63019\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_63019_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"63019"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_63019_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_63019_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_63019_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "254 completed."
[1] NA
[1] "Running query idx 750 with cid 443946"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"443946\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_443946_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"443946"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_443946_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_443946_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_443946_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "255 completed."
[1] NA
[1] "Running query idx 751 with cid 4168"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4168\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4168_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4168"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4168_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4168_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4168_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "256 completed."
[1] NA
[1] "Running query idx 752 with cid 4171"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4171\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4171_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4171_transformations: download successful"
$TP_File_Name
[1] "CID_4171_transformations.csv"

$TP_Unique_CIDs
[1] 62936

[1] "257 completed."
[1] 62936
[1] "Running query idx 753 with cid 4173"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4173\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4173_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4173"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4173_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4173_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4173_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "258 completed."
[1] NA
[1] "Running query idx 754 with cid 4184"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4184\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4184_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4184_transformations: download successful"
$TP_File_Name
[1] "CID_4184_transformations.csv"

$TP_Unique_CIDs
[1]  115194 3085244    4184

[1] "259 completed."
[1]  115194 3085244    4184
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 755 with cid 4189"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4189\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4189_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4189"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4189_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4189_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4189_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "260 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 756 with cid 4192"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4192\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4192_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4192"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4192_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4192_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4192_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "261 completed."
[1] NA
[1] "Running query idx 757 with cid 9829523"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9829523\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9829523_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9829523"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9829523_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9829523_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9829523_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "262 completed."
[1] NA
[1] "Running query idx 758 with cid 55245"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"55245\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_55245_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"55245"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_55245_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_55245_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_55245_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "263 completed."
[1] NA
[1] "Running query idx 759 with cid 51634"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"51634\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_51634_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"51634"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_51634_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_51634_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_51634_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "264 completed."
[1] NA
[1] "Running query idx 760 with cid 65833"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65833\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65833_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65833"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65833_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65833_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65833_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "265 completed."
[1] NA
[1] "Running query idx 761 with cid 4197"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4197\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4197_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4197"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4197_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4197_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4197_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "266 completed."
[1] NA
[1] "Running query idx 762 with cid 54675783"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54675783\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54675783_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54675783"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54675783_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54675783_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54675783_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "267 completed."
[1] NA
[1] "Running query idx 763 with cid 4201"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4201\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4201_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4201"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4201_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4201_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4201_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "268 completed."
[1] NA
[1] "Running query idx 764 with cid 4205"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4205\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4205_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4205_transformations: download successful"
$TP_File_Name
[1] "CID_4205_transformations.csv"

$TP_Unique_CIDs
[1] 11500131

[1] "269 completed."
[1] 11500131
[1] "Running query idx 765 with cid 5282381"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5282381\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5282381_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5282381"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5282381_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5282381_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5282381_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "270 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 766 with cid 4212"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4212\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4212_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4212"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4212_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4212_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4212_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "271 completed."
[1] NA
[1] "Running query idx 767 with cid 5281080"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281080\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281080_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281080"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281080_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281080_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281080_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "272 completed."
[1] NA
[1] "Running query idx 768 with cid 5281042"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281042\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281042_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281042"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281042_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281042_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281042_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "273 completed."
[1] NA
[1] "Running query idx 769 with cid 129893558"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129893558\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129893558_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129893558"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129893558_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129893558_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129893558_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "274 completed."
[1] NA
[1] "Running query idx 770 with cid 65906"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65906\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65906_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65906"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65906_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65906_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65906_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "275 completed."
[1] NA
[1] "Running query idx 771 with cid 4235"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4235\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4235_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4235"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4235_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4235_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4235_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "276 completed."
[1] NA
[1] "Running query idx 772 with cid 4236"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4236\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4236_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4236"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4236_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4236_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4236_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "277 completed."
[1] NA
[1] "Running query idx 773 with cid 5353788"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5353788\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5353788_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5353788"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5353788_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5353788_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5353788_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "278 completed."
[1] NA
[1] "Running query idx 774 with cid 441335"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"441335\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_441335_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"441335"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_441335_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_441335_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_441335_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "279 completed."
[1] NA
[1] "Running query idx 775 with cid 5281040"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281040\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281040_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281040"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281040_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281040_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281040_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "280 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 776 with cid 5288826"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5288826\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5288826_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5288826_transformations: download successful"
$TP_File_Name
[1] "CID_5288826_transformations.csv"

$TP_Unique_CIDs
[1] 5288826

[1] "281 completed."
[1] 5288826
[1] "Running query idx 777 with cid 152946"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"152946\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_152946_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"152946"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_152946_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_152946_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_152946_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "282 completed."
[1] NA
[1] "Running query idx 778 with cid 4810"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4810\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4810_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4810"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4810_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4810_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4810_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "283 completed."
[1] NA
[1] "Running query idx 779 with cid 446596"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"446596\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_446596_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"446596"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_446596_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_446596_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_446596_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "284 completed."
[1] NA
[1] "Running query idx 780 with cid 446541"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"446541\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_446541_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"446541"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_446541_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_446541_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_446541_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "285 completed."
[1] NA
[1] "Running query idx 781 with cid 4409"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4409\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4409_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4409"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4409_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4409_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4409_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "286 completed."
[1] NA
[1] "Running query idx 782 with cid 4417"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4417\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4417_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4417"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4417_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4417_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4417_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "287 completed."
[1] NA
[1] "Running query idx 783 with cid 5284594"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284594\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284594_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284594"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284594_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284594_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284594_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "288 completed."
[1] NA
[1] "Running query idx 784 with cid 5284596"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284596\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284596_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284596"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284596_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284596_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284596_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "289 completed."
[1] NA
[1] "Running query idx 785 with cid 4436"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4436\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4436_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4436"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4436_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4436_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4436_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "290 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 786 with cid 156391"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"156391\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_156391_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"156391"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_156391_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_156391_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_156391_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "291 completed."
[1] NA
[1] "Running query idx 787 with cid 4440"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4440\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4440_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4440"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4440_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4440_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4440_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "292 completed."
[1] NA
[1] "Running query idx 788 with cid 71301"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71301\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71301_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71301"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71301_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71301_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71301_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "293 completed."
[1] NA
[1] "Running query idx 789 with cid 9844194"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9844194\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9844194_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9844194"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9844194_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9844194_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9844194_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "294 completed."
[1] NA
[1] "Running query idx 790 with cid 189562"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"189562\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_189562_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"189562"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_189562_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_189562_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_189562_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "295 completed."
[1] NA
[1] "Running query idx 791 with cid 71750969"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71750969\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71750969_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71750969"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71750969_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71750969_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71750969_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "296 completed."
[1] NA
[1] "Running query idx 792 with cid 118422671"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"118422671\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_118422671_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"118422671"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_118422671_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_118422671_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_118422671_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "297 completed."
[1] NA
[1] "Running query idx 793 with cid 71149993"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71149993\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71149993_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71149993"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71149993_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71149993_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71149993_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "298 completed."
[1] NA
[1] "Running query idx 794 with cid 4450"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4450\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4450_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4450"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4450_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4450_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4450_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "299 completed."
[1] NA
[1] "Running query idx 795 with cid 3011155"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3011155\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3011155_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3011155"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3011155_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3011155_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3011155_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "300 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 796 with cid 4456"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4456\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4456_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4456"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4456_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4456_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4456_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "301 completed."
[1] NA
[1] "Running query idx 797 with cid 151075"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"151075\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_151075_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"151075"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_151075_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_151075_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_151075_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "302 completed."
[1] NA
[1] "Running query idx 798 with cid 4463"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4463\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4463_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4463"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4463_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4463_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4463_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "303 completed."
[1] NA
[1] "Running query idx 799 with cid 4474"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4474\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4474_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4474"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4474_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4474_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4474_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "304 completed."
[1] NA
[1] "Running query idx 800 with cid 4477"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4477\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4477_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4477"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4477_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4477_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4477_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "305 completed."
[1] NA
[1] "Running query idx 801 with cid 936"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"936\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_936_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"936"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_936_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_936_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_936_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "306 completed."
[1] NA
[1] "Running query idx 802 with cid 89594"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"89594\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_89594_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_89594_transformations: download successful"
$TP_File_Name
[1] "CID_89594_transformations.csv"

$TP_Unique_CIDs
[1] 412 408

[1] "307 completed."
[1] 412 408
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 803 with cid 4485"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4485\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4485_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4485"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4485_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4485_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4485_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "308 completed."
[1] NA
[1] "Running query idx 804 with cid 4488"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4488\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4488_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4488"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4488_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4488_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4488_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "309 completed."
[1] NA
[1] "Running query idx 805 with cid 5337997"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5337997\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5337997_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5337997"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5337997_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5337997_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5337997_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "310 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 806 with cid 9571062"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9571062\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9571062_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9571062"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9571062_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9571062_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9571062_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "311 completed."
[1] NA
[1] "Running query idx 807 with cid 644241"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"644241\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_644241_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"644241"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_644241_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_644241_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_644241_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "312 completed."
[1] NA
[1] "Running query idx 808 with cid 4497"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4497\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4497_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4497"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4497_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4497_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4497_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "313 completed."
[1] NA
[1] "Running query idx 809 with cid 4506"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4506\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4506_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4506"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4506_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4506_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4506_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "314 completed."
[1] NA
[1] "Running query idx 810 with cid 5447130"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5447130\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5447130_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5447130"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5447130_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5447130_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5447130_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "315 completed."
[1] NA
[1] "Running query idx 811 with cid 6604200"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6604200\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6604200_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6604200"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6604200_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6604200_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6604200_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "316 completed."
[1] NA
[1] "Running query idx 812 with cid 948"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"948\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_948_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"948"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_948_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_948_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_948_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "317 completed."
[1] NA
[1] "Running query idx 813 with cid 2997"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2997\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2997_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2997_transformations: download successful"
$TP_File_Name
[1] "CID_2997_transformations.csv"

$TP_Unique_CIDs
[1] 2997

[1] "318 completed."
[1] 2997
[1] "Running query idx 814 with cid 9568628"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9568628\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9568628_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9568628"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9568628_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9568628_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9568628_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "319 completed."
[1] NA
[1] "Running query idx 815 with cid 62930"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"62930\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_62930_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"62930"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_62930_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_62930_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_62930_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "320 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 816 with cid 6537152"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6537152\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6537152_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6537152"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6537152_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6537152_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6537152_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "321 completed."
[1] NA
[1] "Running query idx 817 with cid 13752005"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"13752005\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_13752005_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"13752005"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_13752005_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_13752005_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_13752005_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "322 completed."
[1] NA
[1] "Running query idx 818 with cid 439260"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"439260\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_439260_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"439260"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_439260_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_439260_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_439260_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "323 completed."
[1] NA
[1] "Running query idx 819 with cid 6230"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6230\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6230_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6230"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6230_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6230_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6230_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "324 completed."
[1] NA
[1] "Running query idx 820 with cid 4539"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4539\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4539_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4539"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4539_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4539_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4539_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "325 completed."
[1] NA
[1] "Running query idx 821 with cid 13109"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"13109\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_13109_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"13109"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_13109_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_13109_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_13109_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "326 completed."
[1] NA
[1] "Running query idx 822 with cid 4542"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4542\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4542_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4542"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4542_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4542_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4542_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "327 completed."
[1] NA
[1] "Running query idx 823 with cid 16051930"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16051930\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16051930_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16051930"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16051930_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16051930_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16051930_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "328 completed."
[1] NA
[1] "Running query idx 824 with cid 5702096"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5702096\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5702096_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5702096"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5702096_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5702096_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5702096_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "329 completed."
[1] NA
[1] "Running query idx 825 with cid 12598310"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"12598310\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_12598310_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"12598310"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_12598310_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_12598310_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_12598310_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "330 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 826 with cid 60148395"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60148395\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60148395_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60148395"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60148395_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60148395_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60148395_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "331 completed."
[1] NA
[1] "Running query idx 827 with cid 46782588"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"46782588\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_46782588_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"46782588"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_46782588_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_46782588_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_46782588_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "332 completed."
[1] NA
[1] "Running query idx 828 with cid 121231040"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"121231040\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_121231040_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"121231040"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_121231040_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_121231040_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_121231040_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "333 completed."
[1] NA
[1] "Running query idx 829 with cid 126968545"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"126968545\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_126968545_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"126968545"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_126968545_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_126968545_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_126968545_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "334 completed."
[1] NA
[1] "Running query idx 830 with cid 447715"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"447715\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_447715_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"447715"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_447715_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_447715_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_447715_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "335 completed."
[1] NA
[1] "Running query idx 831 with cid 51167"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"51167\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_51167_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"51167"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_51167_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_51167_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_51167_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "336 completed."
[1] NA
[1] "Running query idx 832 with cid 448601"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"448601\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_448601_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"448601"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_448601_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_448601_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_448601_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "337 completed."
[1] NA
[1] "Running query idx 833 with cid 383414"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"383414\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_383414_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"383414"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_383414_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_383414_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_383414_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "338 completed."
[1] NA
[1] "Running query idx 834 with cid 6400441"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6400441\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6400441_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6400441"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6400441_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6400441_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6400441_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "339 completed."
[1] NA
[1] "Running query idx 835 with cid 138107728"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"138107728\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_138107728_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"138107728"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_138107728_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_138107728_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_138107728_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "340 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 836 with cid 44420813"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44420813\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44420813_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44420813"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44420813_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44420813_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44420813_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "341 completed."
[1] NA
[1] "Running query idx 837 with cid 90488715"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"90488715\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_90488715_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"90488715"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_90488715_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_90488715_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_90488715_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "342 completed."
[1] NA
[1] "Running query idx 838 with cid 44311916"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44311916\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44311916_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44311916"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44311916_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44311916_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44311916_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "343 completed."
[1] NA
[1] "Running query idx 839 with cid 86289069"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"86289069\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_86289069_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"86289069"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_86289069_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_86289069_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_86289069_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "344 completed."
[1] NA
[1] "Running query idx 840 with cid 4583"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4583\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4583_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4583"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4583_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4583_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4583_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "345 completed."
[1] NA
[1] "Running query idx 841 with cid 135398745"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398745\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398745_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398745"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398745_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398745_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398745_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "346 completed."
[1] NA
[1] "Running query idx 842 with cid 130881"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"130881\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_130881_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"130881"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_130881_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_130881_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_130881_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "347 completed."
[1] NA
[1] "Running query idx 843 with cid 5281071"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5281071\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5281071_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5281071"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5281071_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5281071_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5281071_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "348 completed."
[1] NA
[1] "Running query idx 844 with cid 4594"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4594\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4594_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4594"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4594_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4594_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4594_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "349 completed."
[1] NA
[1] "Running query idx 845 with cid 4595"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4595\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4595_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4595"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4595_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4595_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4595_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "350 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 846 with cid 3034010"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3034010\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3034010_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3034010"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3034010_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3034010_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3034010_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "351 completed."
[1] NA
[1] "Running query idx 847 with cid 28061"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"28061\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_28061_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"28061"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_28061_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_28061_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_28061_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "352 completed."
[1] NA
[1] "Running query idx 848 with cid 65028"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65028\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65028_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65028_transformations: download successful"
$TP_File_Name
[1] "CID_65028_transformations.csv"

$TP_Unique_CIDs
[1] 449381

[1] "353 completed."
[1] 449381
[1] "Running query idx 849 with cid 72092"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"72092\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_72092_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"72092"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_72092_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_72092_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_72092_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "354 completed."
[1] NA
[1] "Running query idx 851 with cid 4616"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4616\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4616_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4616"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4616_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4616_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4616_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "355 completed."
[1] NA
[1] "Running query idx 852 with cid 4633"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4633\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4633_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4633"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4633_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4633_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4633_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "356 completed."
[1] NA
[1] "Running query idx 853 with cid 4634"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4634\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4634_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4634"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4634_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4634_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4634_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "357 completed."
[1] NA
[1] "Running query idx 854 with cid 5284603"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284603\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284603_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284603"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284603_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284603_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284603_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "358 completed."
[1] NA
[1] "Running query idx 855 with cid 4636"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4636\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4636_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4636"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4636_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4636_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4636_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "359 completed."
[1] NA
[1] "Running query idx 856 with cid 36314"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"36314\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_36314_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"36314"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_36314_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_36314_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_36314_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "360 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 857 with cid 441276"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"441276\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_441276_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"441276"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_441276_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_441276_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_441276_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "361 completed."
[1] NA
[1] "Running query idx 858 with cid 4666"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4666\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4666_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4666"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4666_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4666_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4666_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "362 completed."
[1] NA
[1] "Running query idx 859 with cid 23636632"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23636632\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23636632_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23636632"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23636632_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23636632_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23636632_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "363 completed."
[1] NA
[1] "Running query idx 860 with cid 73759704"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"73759704\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_73759704_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"73759704"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_73759704_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_73759704_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_73759704_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "364 completed."
[1] NA
[1] "Running query idx 861 with cid 91885464"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"91885464\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_91885464_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"91885464"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_91885464_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_91885464_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_91885464_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "365 completed."
[1] NA
[1] "Running query idx 862 with cid 44155032"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44155032\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44155032_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44155032"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44155032_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44155032_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44155032_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "366 completed."
[1] NA
[1] "Running query idx 863 with cid 6713921"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6713921\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6713921_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6713921"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6713921_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6713921_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6713921_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "367 completed."
[1] NA
[1] "Running query idx 864 with cid 6915727"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6915727\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6915727_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6915727"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6915727_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6915727_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6915727_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "368 completed."
[1] NA
[1] "Running query idx 865 with cid 5352019"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5352019\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5352019_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5352019"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5352019_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5352019_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5352019_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "369 completed."
[1] NA
[1] "Running query idx 866 with cid 24791027"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24791027\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24791027_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24791027"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24791027_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24791027_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24791027_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "370 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 867 with cid 16760674"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16760674\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16760674_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16760674"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16760674_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16760674_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16760674_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "371 completed."
[1] NA
[1] "Running query idx 868 with cid 53313247"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53313247\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53313247_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53313247"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53313247_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53313247_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53313247_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "372 completed."
[1] NA
[1] "Running query idx 869 with cid 115237"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"115237\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_115237_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"115237"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_115237_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_115237_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_115237_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "373 completed."
[1] NA
[1] "Running query idx 870 with cid 6337614"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6337614\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6337614_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6337614"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6337614_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6337614_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6337614_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "374 completed."
[1] NA
[1] "Running query idx 871 with cid 4674"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4674\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4674_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4674"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4674_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4674_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4674_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "375 completed."
[1] NA
[1] "Running query idx 872 with cid 6918837"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918837\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918837_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918837"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918837_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918837_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918837_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "376 completed."
[1] NA
[1] "Running query idx 873 with cid 4679"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4679\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4679_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4679"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4679_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4679_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4679_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "377 completed."
[1] NA
[1] "Running query idx 874 with cid 1983"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1983\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1983_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1983"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1983_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1983_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1983_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "378 completed."
[1] NA
[1] "Running query idx 875 with cid 119828"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"119828\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_119828_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"119828"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_119828_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_119828_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_119828_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "379 completed."
[1] NA
[1] "Running query idx 876 with cid 165580"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"165580\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_165580_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"165580"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_165580_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_165580_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_165580_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "380 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 877 with cid 10113978"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"10113978\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_10113978_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"10113978"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_10113978_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_10113978_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_10113978_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "381 completed."
[1] NA
[1] "Running query idx 878 with cid 135410875"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135410875\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135410875_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135410875"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135410875_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135410875_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135410875_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "382 completed."
[1] NA
[1] "Running query idx 879 with cid 135398748"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398748\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398748_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398748"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398748_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398748_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398748_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "383 completed."
[1] NA
[1] "Running query idx 880 with cid 33630"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"33630\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_33630_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"33630"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_33630_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_33630_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_33630_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "384 completed."
[1] NA
[1] "Running query idx 881 with cid 8813"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"8813\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_8813_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"8813"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_8813_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_8813_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_8813_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "385 completed."
[1] NA
[1] "Running query idx 882 with cid 4740"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4740\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4740_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4740"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4740_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4740_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4740_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "386 completed."
[1] NA
[1] "Running query idx 883 with cid 9924495"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9924495\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9924495_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9924495"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9924495_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9924495_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9924495_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "387 completed."
[1] NA
[1] "Running query idx 884 with cid 107807"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"107807\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_107807_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"107807"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_107807_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_107807_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_107807_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "388 completed."
[1] NA
[1] "Running query idx 885 with cid 40326"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"40326\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_40326_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"40326"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_40326_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_40326_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_40326_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "389 completed."
[1] NA
[1] "Running query idx 886 with cid 3675"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3675\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3675_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3675"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3675_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3675_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3675_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "390 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 887 with cid 4763"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4763\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4763_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4763"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4763_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4763_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4763_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "391 completed."
[1] NA
[1] "Running query idx 888 with cid 6869"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6869\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6869_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6869"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6869_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6869_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6869_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "392 completed."
[1] NA
[1] "Running query idx 889 with cid 54680692"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54680692\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54680692_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54680692"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54680692_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54680692_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54680692_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "393 completed."
[1] NA
[1] "Running query idx 890 with cid 6041"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6041\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6041_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6041"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6041_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6041_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6041_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "394 completed."
[1] NA
[1] "Running query idx 891 with cid 1775"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1775\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1775_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1775"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1775_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1775_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1775_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "395 completed."
[1] NA
[1] "Running query idx 892 with cid 5284607"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284607\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284607_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284607"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284607_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284607_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284607_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "396 completed."
[1] NA
[1] "Running query idx 893 with cid 5910"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5910\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5910_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5910"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5910_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5910_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5910_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "397 completed."
[1] NA
[1] "Running query idx 894 with cid 6509979"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6509979\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6509979_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6509979"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6509979_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6509979_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6509979_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "398 completed."
[1] NA
[1] "Running query idx 895 with cid 6447131"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6447131\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6447131_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6447131"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6447131_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6447131_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6447131_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "399 completed."
[1] NA
[1] "Running query idx 896 with cid 16051947"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16051947\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16051947_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16051947"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16051947_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16051947_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16051947_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "400 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 897 with cid 53486290"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53486290\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53486290_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53486290"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53486290_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53486290_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53486290_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "401 completed."
[1] NA
[1] "Running query idx 898 with cid 17753757"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"17753757\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_17753757_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"17753757"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_17753757_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_17753757_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_17753757_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "402 completed."
[1] NA
[1] "Running query idx 899 with cid 138107776"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"138107776\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_138107776_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"138107776"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_138107776_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_138107776_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_138107776_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "403 completed."
[1] NA
[1] "Running query idx 900 with cid 3055172"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3055172\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3055172_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3055172"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3055172_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3055172_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3055172_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "404 completed."
[1] NA
[1] "Running query idx 901 with cid 53394893"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53394893\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53394893_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53394893"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53394893_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53394893_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53394893_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "405 completed."
[1] NA
[1] "Running query idx 902 with cid 102572331"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"102572331\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_102572331_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"102572331"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_102572331_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_102572331_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_102572331_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "406 completed."
[1] NA
[1] "Running query idx 903 with cid 129010022"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129010022\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129010022_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129010022"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129010022_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129010022_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129010022_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "407 completed."
[1] NA
[1] "Running query idx 904 with cid 146157034"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"146157034\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_146157034_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"146157034"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_146157034_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_146157034_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_146157034_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "408 completed."
[1] NA
[1] "Running query idx 905 with cid 126969212"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"126969212\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_126969212_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"126969212"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_126969212_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_126969212_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_126969212_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "409 completed."
[1] NA
[1] "Running query idx 906 with cid 131750284"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"131750284\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_131750284_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"131750284"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_131750284_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_131750284_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_131750284_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "410 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 907 with cid 133659920"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"133659920\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_133659920_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"133659920"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_133659920_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_133659920_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_133659920_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "411 completed."
[1] NA
[1] "Running query idx 908 with cid 134129698"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134129698\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134129698_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134129698"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134129698_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134129698_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134129698_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "412 completed."
[1] NA
[1] "Running query idx 909 with cid 134694728"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134694728\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134694728_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134694728"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134694728_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134694728_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134694728_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "413 completed."
[1] NA
[1] "Running query idx 910 with cid 129317859"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129317859\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129317859_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129317859"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129317859_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129317859_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129317859_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "414 completed."
[1] NA
[1] "Running query idx 911 with cid 21973267"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"21973267\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_21973267_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"21973267"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_21973267_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_21973267_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_21973267_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "415 completed."
[1] NA
[1] "Running query idx 912 with cid 24847863"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24847863\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24847863_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24847863"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24847863_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24847863_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24847863_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "416 completed."
[1] NA
[1] "Running query idx 913 with cid 16362"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16362\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16362_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16362"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16362_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16362_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16362_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "417 completed."
[1] NA
[1] "Running query idx 914 with cid 4829"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4829\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4829_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4829"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4829_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4829_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4829_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "418 completed."
[1] NA
[1] "Running query idx 915 with cid 4830"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4830\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4830_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4830"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4830_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4830_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4830_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "419 completed."
[1] NA
[1] "Running query idx 916 with cid 43672"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"43672\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_43672_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"43672"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_43672_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_43672_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_43672_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "420 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 917 with cid 4843"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4843\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4843_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4843"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4843_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4843_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4843_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "421 completed."
[1] NA
[1] "Running query idx 918 with cid 40632"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"40632\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_40632_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"40632"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_40632_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_40632_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_40632_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "422 completed."
[1] NA
[1] "Running query idx 919 with cid 4850"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4850\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4850_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4850"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4850_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4850_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4850_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "423 completed."
[1] NA
[1] "Running query idx 920 with cid 9331"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9331\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9331_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9331"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9331_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9331_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9331_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "424 completed."
[1] NA
[1] "Running query idx 921 with cid 54676228"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54676228\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54676228_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54676228"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54676228_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54676228_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54676228_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "425 completed."
[1] NA
[1] "Running query idx 922 with cid 65015"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65015\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65015_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65015"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65015_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65015_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65015_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "426 completed."
[1] NA
[1] "Running query idx 923 with cid 656641"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"656641\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_656641_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"656641"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_656641_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_656641_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_656641_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "427 completed."
[1] NA
[1] "Running query idx 924 with cid 134780"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134780\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134780_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134780"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134780_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134780_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134780_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "428 completed."
[1] NA
[1] "Running query idx 925 with cid 24826799"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24826799\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24826799_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24826799"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24826799_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24826799_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24826799_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "429 completed."
[1] NA
[1] "Running query idx 926 with cid 468595"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"468595\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_468595_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"468595"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_468595_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_468595_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_468595_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "430 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 927 with cid 119570"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"119570\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_119570_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"119570"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_119570_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_119570_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_119570_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "431 completed."
[1] NA
[1] "Running query idx 928 with cid 4888"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4888\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4888_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4888"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4888_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4888_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4888_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "432 completed."
[1] NA
[1] "Running query idx 929 with cid 54687"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54687\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54687_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54687"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54687_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54687_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54687_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "433 completed."
[1] NA
[1] "Running query idx 930 with cid 4890"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4890\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4890_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4890"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4890_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4890_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4890_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "434 completed."
[1] NA
[1] "Running query idx 931 with cid 4893"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4893\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4893_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4893"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4893_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4893_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4893_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "435 completed."
[1] NA
[1] "Running query idx 932 with cid 5755"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5755\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5755_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5755_transformations: download successful"
$TP_File_Name
[1] "CID_5755_transformations.csv"

$TP_Unique_CIDs
[1] 5865

[1] "436 completed."
[1] 5865
[1] "Running query idx 933 with cid 5486971"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5486971\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5486971_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5486971"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5486971_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5486971_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5486971_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "437 completed."
[1] NA
[1] "Running query idx 934 with cid 4906"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4906\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4906_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4906"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4906_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4906_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4906_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "438 completed."
[1] NA
[1] "Running query idx 935 with cid 4909"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4909\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4909_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4909"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4909_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4909_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4909_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "439 completed."
[1] NA
[1] "Running query idx 936 with cid 4914"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4914\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4914_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4914"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4914_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4914_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4914_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "440 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 937 with cid 4919"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4919\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4919_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4919"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4919_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4919_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4919_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "441 completed."
[1] NA
[1] "Running query idx 938 with cid 5994"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5994\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5994_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5994"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5994_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5994_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5994_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "442 completed."
[1] NA
[1] "Running query idx 939 with cid 6178111"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6178111\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6178111_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6178111"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6178111_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6178111_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6178111_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "443 completed."
[1] NA
[1] "Running query idx 940 with cid 4932"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4932\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4932_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4932"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4932_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4932_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4932_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "444 completed."
[1] NA
[1] "Running query idx 941 with cid 1031"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1031\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1031_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1031"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1031_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1031_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1031_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "445 completed."
[1] NA
[1] "Running query idx 942 with cid 4943"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4943\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4943_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4943"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4943_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4943_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4943_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "446 completed."
[1] NA
[1] "Running query idx 943 with cid 4946"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4946\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4946_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4946"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4946_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4946_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4946_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "447 completed."
[1] NA
[1] "Running query idx 944 with cid 657298"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"657298\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_657298_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"657298"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_657298_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_657298_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_657298_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "448 completed."
[1] NA
[1] "Running query idx 945 with cid 14670"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"14670\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_14670_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"14670"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_14670_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_14670_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_14670_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "449 completed."
[1] NA
[1] "Running query idx 946 with cid 3052762"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3052762\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3052762_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3052762"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3052762_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3052762_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3052762_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "450 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 947 with cid 7028"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"7028\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_7028_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"7028"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_7028_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_7028_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_7028_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "451 completed."
[1] NA
[1] "Running query idx 948 with cid 1046"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1046\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1046_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1046"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1046_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1046_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1046_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "452 completed."
[1] NA
[1] "Running query idx 949 with cid 4991"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4991\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4991_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4991"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4991_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4991_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4991_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "453 completed."
[1] NA
[1] "Running query idx 950 with cid 1054"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1054\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1054_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1054"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1054_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1054_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1054_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "454 completed."
[1] NA
[1] "Running query idx 951 with cid 4993"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4993\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4993_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4993"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4993_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4993_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4993_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "455 completed."
[1] NA
[1] "Running query idx 952 with cid 5002"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5002\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5002_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5002"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5002_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5002_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5002_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "456 completed."
[1] NA
[1] "Running query idx 953 with cid 54892"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54892\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54892_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54892"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54892_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54892_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54892_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "457 completed."
[1] NA
[1] "Running query idx 954 with cid 5029"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5029\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5029_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5029"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5029_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5029_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5029_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "458 completed."
[1] NA
[1] "Running query idx 955 with cid 107751"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"107751\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_107751_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"107751"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_107751_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_107751_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_107751_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "459 completed."
[1] NA
[1] "Running query idx 956 with cid 5035"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5035\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5035_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5035"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5035_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5035_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5035_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "460 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 957 with cid 54671008"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54671008\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54671008_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54671008"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54671008_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54671008_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54671008_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "461 completed."
[1] NA
[1] "Running query idx 958 with cid 135400182"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135400182\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135400182_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135400182"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135400182_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135400182_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135400182_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "462 completed."
[1] NA
[1] "Running query idx 959 with cid 5362129"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5362129\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5362129_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5362129"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5362129_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5362129_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5362129_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "463 completed."
[1] NA
[1] "Running query idx 960 with cid 3001055"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3001055\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3001055_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3001055_transformations: download successful"
$TP_File_Name
[1] "CID_3001055_transformations.csv"

$TP_Unique_CIDs
[1] 3033888 3033889

[1] "464 completed."
[1] 3033888 3033889
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 961 with cid 3052776"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3052776\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3052776_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3052776"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3052776_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3052776_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3052776_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "465 completed."
[1] NA
[1] "Running query idx 962 with cid 127151"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"127151\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_127151_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"127151"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_127151_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_127151_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_127151_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "466 completed."
[1] NA
[1] "Running query idx 963 with cid 65856"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65856\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65856_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65856"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65856_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65856_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65856_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "467 completed."
[1] NA
[1] "Running query idx 964 with cid 3022645"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3022645\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3022645_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3022645"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3022645_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3022645_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3022645_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "468 completed."
[1] NA
[1] "Running query idx 965 with cid 5311403"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311403\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311403_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311403"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311403_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311403_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311403_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "469 completed."
[1] NA
[1] "Running query idx 966 with cid 219024"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"219024\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_219024_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"219024"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_219024_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_219024_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_219024_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "470 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 967 with cid 11167602"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11167602\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11167602_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11167602"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11167602_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11167602_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11167602_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "471 completed."
[1] NA
[1] "Running query idx 968 with cid 60815"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60815\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60815_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60815"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60815_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60815_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60815_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "472 completed."
[1] NA
[1] "Running query idx 969 with cid 65981"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65981\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65981_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65981"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65981_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65981_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65981_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "473 completed."
[1] NA
[1] "Running query idx 970 with cid 121892"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"121892\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_121892_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"121892"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_121892_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_121892_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_121892_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "474 completed."
[1] NA
[1] "Running query idx 971 with cid 37542"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"37542\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_37542_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"37542"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_37542_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_37542_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_37542_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "475 completed."
[1] NA
[1] "Running query idx 972 with cid 135398743"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398743\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398743_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398743"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398743_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398743_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398743_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "476 completed."
[1] NA
[1] "Running query idx 973 with cid 135950975"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135950975\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135950975_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135950975"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135950975_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135950975_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135950975_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "477 completed."
[1] NA
[1] "Running query idx 974 with cid 136117120"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136117120\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136117120_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136117120"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136117120_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136117120_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136117120_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "478 completed."
[1] NA
[1] "Running query idx 975 with cid 135458645"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135458645\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135458645_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135458645"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135458645_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135458645_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135458645_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "479 completed."
[1] NA
[1] "Running query idx 976 with cid 136053407"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136053407\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136053407_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136053407"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136053407_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136053407_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136053407_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "480 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 977 with cid 136968143"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136968143\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136968143_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136968143"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136968143_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136968143_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136968143_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "481 completed."
[1] NA
[1] "Running query idx 978 with cid 136257950"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136257950\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136257950_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136257950"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136257950_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136257950_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136257950_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "482 completed."
[1] NA
[1] "Running query idx 979 with cid 137313637"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137313637\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137313637_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137313637"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137313637_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137313637_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137313637_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "483 completed."
[1] NA
[1] "Running query idx 980 with cid 137295261"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137295261\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137295261_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137295261"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137295261_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137295261_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137295261_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "484 completed."
[1] NA
[1] "Running query idx 981 with cid 137143151"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137143151\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137143151_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137143151"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137143151_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137143151_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137143151_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "485 completed."
[1] NA
[1] "Running query idx 982 with cid 135925740"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135925740\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135925740_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135925740"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135925740_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135925740_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135925740_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "486 completed."
[1] NA
[1] "Running query idx 983 with cid 135398735"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398735\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398735_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398735"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398735_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398735_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398735_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "487 completed."
[1] NA
[1] "Running query idx 984 with cid 135550179"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135550179\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135550179_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135550179"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135550179_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135550179_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135550179_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "488 completed."
[1] NA
[1] "Running query idx 985 with cid 135876149"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135876149\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135876149_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135876149"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135876149_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135876149_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135876149_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "489 completed."
[1] NA
[1] "Running query idx 986 with cid 135900090"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135900090\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135900090_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135900090"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135900090_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135900090_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135900090_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "490 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 987 with cid 135925261"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135925261\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135925261_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135925261"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135925261_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135925261_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135925261_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "491 completed."
[1] NA
[1] "Running query idx 988 with cid 135441414"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135441414\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135441414_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135441414"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135441414_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135441414_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135441414_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "492 completed."
[1] NA
[1] "Running query idx 989 with cid 135512673"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135512673\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135512673_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135512673"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135512673_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135512673_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135512673_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "493 completed."
[1] NA
[1] "Running query idx 990 with cid 135925741"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135925741\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135925741_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135925741"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135925741_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135925741_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135925741_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "494 completed."
[1] NA
[1] "Running query idx 991 with cid 135921134"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135921134\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135921134_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135921134"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135921134_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135921134_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135921134_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "495 completed."
[1] NA
[1] "Running query idx 992 with cid 136122621"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136122621\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136122621_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136122621"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136122621_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136122621_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136122621_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "496 completed."
[1] NA
[1] "Running query idx 993 with cid 135449527"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135449527\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135449527_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135449527"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135449527_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135449527_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135449527_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "497 completed."
[1] NA
[1] "Running query idx 994 with cid 135665293"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135665293\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135665293_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135665293"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135665293_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135665293_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135665293_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "498 completed."
[1] NA
[1] "Running query idx 995 with cid 137177954"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137177954\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137177954_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137177954"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137177954_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137177954_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137177954_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "499 completed."
[1] NA
[1] "Running query idx 996 with cid 137286743"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137286743\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137286743_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137286743"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137286743_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137286743_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137286743_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "500 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 997 with cid 137287990"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137287990\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137287990_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137287990"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137287990_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137287990_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137287990_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "501 completed."
[1] NA
[1] "Running query idx 998 with cid 136601293"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136601293\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136601293_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136601293"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136601293_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136601293_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136601293_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "502 completed."
[1] NA
[1] "Running query idx 999 with cid 136619758"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136619758\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136619758_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136619758"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136619758_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136619758_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136619758_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "503 completed."
[1] NA
[1] "Running query idx 1000 with cid 136709103"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136709103\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136709103_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136709103"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136709103_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136709103_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136709103_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "504 completed."
[1] NA
[1] "Running query idx 1001 with cid 136246612"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"136246612\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_136246612_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"136246612"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_136246612_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_136246612_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_136246612_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "505 completed."
[1] NA
[1] "Running query idx 1002 with cid 6324616"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6324616\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6324616_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6324616"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6324616_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6324616_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6324616_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "506 completed."
[1] NA
[1] "Running query idx 1003 with cid 6436173"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6436173\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6436173_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6436173"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6436173_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6436173_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6436173_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "507 completed."
[1] NA
[1] "Running query idx 1004 with cid 46783403"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"46783403\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_46783403_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"46783403"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_46783403_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_46783403_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_46783403_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "508 completed."
[1] NA
[1] "Running query idx 1005 with cid 72698618"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"72698618\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_72698618_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"72698618"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_72698618_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_72698618_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_72698618_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "509 completed."
[1] NA
[1] "Running query idx 1006 with cid 16667733"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16667733\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16667733_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16667733"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16667733_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16667733_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16667733_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "510 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1007 with cid 53395233"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53395233\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53395233_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53395233"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53395233_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53395233_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53395233_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "511 completed."
[1] NA
[1] "Running query idx 1008 with cid 71296876"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71296876\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71296876_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71296876"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71296876_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71296876_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71296876_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "512 completed."
[1] NA
[1] "Running query idx 1009 with cid 44384716"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44384716\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44384716_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44384716"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44384716_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44384716_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44384716_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "513 completed."
[1] NA
[1] "Running query idx 1010 with cid 122361733"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"122361733\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_122361733_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"122361733"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_122361733_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_122361733_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_122361733_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "514 completed."
[1] NA
[1] "Running query idx 1011 with cid 57507834"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"57507834\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_57507834_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"57507834"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_57507834_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_57507834_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_57507834_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "515 completed."
[1] NA
[1] "Running query idx 1012 with cid 72111"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"72111\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_72111_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"72111"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_72111_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_72111_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_72111_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "516 completed."
[1] NA
[1] "Running query idx 1013 with cid 42608884"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"42608884\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_42608884_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"42608884"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_42608884_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_42608884_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_42608884_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "517 completed."
[1] NA
[1] "Running query idx 1014 with cid 101307877"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"101307877\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_101307877_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"101307877"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_101307877_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_101307877_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_101307877_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "518 completed."
[1] NA
[1] "Running query idx 1015 with cid 66577007"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"66577007\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_66577007_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"66577007"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_66577007_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_66577007_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_66577007_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "519 completed."
[1] NA
[1] "Running query idx 1016 with cid 134754217"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134754217\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134754217_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134754217"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134754217_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134754217_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134754217_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "520 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1017 with cid 134754219"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134754219\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134754219_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134754219"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134754219_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134754219_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134754219_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "521 completed."
[1] NA
[1] "Running query idx 1018 with cid 131632292"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"131632292\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_131632292_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"131632292"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_131632292_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_131632292_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_131632292_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "522 completed."
[1] NA
[1] "Running query idx 1019 with cid 135391139"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135391139\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135391139_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135391139"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135391139_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135391139_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135391139_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "523 completed."
[1] NA
[1] "Running query idx 1020 with cid 68712"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"68712\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_68712_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"68712"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_68712_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_68712_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_68712_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "524 completed."
[1] NA
[1] "Running query idx 1021 with cid 6451164"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6451164\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6451164_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6451164"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6451164_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6451164_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6451164_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "525 completed."
[1] NA
[1] "Running query idx 1022 with cid 5070"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5070\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5070_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5070"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5070_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5070_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5070_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "526 completed."
[1] NA
[1] "Running query idx 1023 with cid 5245"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5245\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5245_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5245"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5245_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5245_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5245_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "527 completed."
[1] NA
[1] "Running query idx 1024 with cid 5073"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5073\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5073_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5073"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5073_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5073_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5073_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "528 completed."
[1] NA
[1] "Running query idx 1025 with cid 392622"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"392622\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_392622_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"392622"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_392622_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_392622_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_392622_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "529 completed."
[1] NA
[1] "Running query idx 1026 with cid 9875401"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9875401\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9875401_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9875401"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9875401_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9875401_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9875401_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "530 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1027 with cid 77991"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"77991\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_77991_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"77991"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_77991_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_77991_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_77991_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "531 completed."
[1] NA
[1] "Running query idx 1028 with cid 5078"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5078\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5078_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5078"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5078_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5078_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5078_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "532 completed."
[1] NA
[1] "Running query idx 1029 with cid 441351"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"441351\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_441351_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"441351"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_441351_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_441351_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_441351_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "533 completed."
[1] NA
[1] "Running query idx 1030 with cid 449193"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"449193\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_449193_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"449193"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_449193_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_449193_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_449193_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "534 completed."
[1] NA
[1] "Running query idx 1031 with cid 5095"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5095\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5095_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5095"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5095_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5095_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5095_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "535 completed."
[1] NA
[1] "Running query idx 1032 with cid 175805"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"175805\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_175805_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"175805"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_175805_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_175805_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_175805_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "536 completed."
[1] NA
[1] "Running query idx 1033 with cid 446157"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"446157\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_446157_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"446157"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_446157_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_446157_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_446157_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "537 completed."
[1] NA
[1] "Running query idx 1034 with cid 5282455"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5282455\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5282455_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5282455"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5282455_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5282455_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5282455_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "538 completed."
[1] NA
[1] "Running query idx 1035 with cid 45114162"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"45114162\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_45114162_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"45114162"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_45114162_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_45114162_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_45114162_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "539 completed."
[1] NA
[1] "Running query idx 1036 with cid 87071853"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"87071853\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_87071853_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"87071853"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_87071853_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_87071853_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_87071853_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "540 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1037 with cid 12086784"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"12086784\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_12086784_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"12086784"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_12086784_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_12086784_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_12086784_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "541 completed."
[1] NA
[1] "Running query idx 1038 with cid 9869776"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9869776\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9869776_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9869776"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9869776_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9869776_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9869776_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "542 completed."
[1] NA
[1] "Running query idx 1039 with cid 129228"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129228\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129228_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129228"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129228_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129228_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129228_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "543 completed."
[1] NA
[1] "Running query idx 1040 with cid 133017"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"133017\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_133017_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"133017"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_133017_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_133017_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_133017_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "544 completed."
[1] NA
[1] "Running query idx 1041 with cid 5280805"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5280805\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5280805_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5280805"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5280805_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5280805_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5280805_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "545 completed."
[1] NA
[1] "Running query idx 1042 with cid 25126798"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25126798\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25126798_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25126798"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25126798_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25126798_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25126798_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "546 completed."
[1] NA
[1] "Running query idx 1043 with cid 9811834"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9811834\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9811834_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9811834"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9811834_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9811834_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9811834_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "547 completed."
[1] NA
[1] "Running query idx 1044 with cid 131682"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"131682\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_131682_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"131682"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_131682_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_131682_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_131682_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "548 completed."
[1] NA
[1] "Running query idx 1045 with cid 2083"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2083\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2083_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2083"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2083_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2083_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2083_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "549 completed."
[1] NA
[1] "Running query idx 1046 with cid 5152"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5152\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5152_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5152"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5152_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5152_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5152_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "550 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1047 with cid 135398654"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398654\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398654_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398654"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398654_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398654_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398654_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "551 completed."
[1] NA
[1] "Running query idx 1048 with cid 441243"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"441243\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_441243_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"441243"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_441243_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_441243_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_441243_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "552 completed."
[1] NA
[1] "Running query idx 1049 with cid 11243969"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11243969\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11243969_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11243969"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11243969_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11243969_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11243969_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "553 completed."
[1] NA
[1] "Running query idx 1050 with cid 11235729"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11235729\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11235729_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11235729"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11235729_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11235729_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11235729_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "554 completed."
[1] NA
[1] "Running query idx 1051 with cid 66576989"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"66576989\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_66576989_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"66576989"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_66576989_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_66576989_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_66576989_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "555 completed."
[1] NA
[1] "Running query idx 1052 with cid 58391580"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"58391580\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_58391580_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"58391580"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_58391580_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_58391580_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_58391580_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "556 completed."
[1] NA
[1] "Running query idx 1053 with cid 78577434"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"78577434\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_78577434_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"78577434"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_78577434_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_78577434_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_78577434_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "557 completed."
[1] NA
[1] "Running query idx 1054 with cid 129317852"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129317852\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129317852_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129317852"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129317852_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129317852_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129317852_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "558 completed."
[1] NA
[1] "Running query idx 1055 with cid 134694638"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134694638\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134694638_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134694638"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134694638_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134694638_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134694638_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "559 completed."
[1] NA
[1] "Running query idx 1056 with cid 98047158"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"98047158\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_98047158_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"98047158"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_98047158_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_98047158_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_98047158_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "560 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1057 with cid 129317586"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129317586\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129317586_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129317586"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129317586_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129317586_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129317586_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "561 completed."
[1] NA
[1] "Running query idx 1058 with cid 129009973"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129009973\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129009973_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129009973"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129009973_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129009973_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129009973_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "562 completed."
[1] NA
[1] "Running query idx 1059 with cid 3000322"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3000322\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3000322_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3000322"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3000322_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3000322_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3000322_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "563 completed."
[1] NA
[1] "Running query idx 1060 with cid 5184"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5184\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5184_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5184"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5184_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5184_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5184_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "564 completed."
[1] NA
[1] "Running query idx 1061 with cid 11968014"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11968014\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11968014_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11968014"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11968014_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11968014_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11968014_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "565 completed."
[1] NA
[1] "Running query idx 1062 with cid 153311"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"153311\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_153311_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"153311"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_153311_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_153311_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_153311_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "566 completed."
[1] NA
[1] "Running query idx 1063 with cid 6451257"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6451257\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6451257_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6451257"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6451257_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6451257_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6451257_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "567 completed."
[1] NA
[1] "Running query idx 1064 with cid 6432494"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6432494\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6432494_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6432494"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6432494_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6432494_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6432494_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "568 completed."
[1] NA
[1] "Running query idx 1065 with cid 2723877"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2723877\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2723877_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2723877"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2723877_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2723877_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2723877_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "569 completed."
[1] NA
[1] "Running query idx 1066 with cid 5809"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5809\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5809_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5809"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5809_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5809_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5809_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "570 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1067 with cid 16399351"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16399351\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16399351_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16399351"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16399351_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16399351_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16399351_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "571 completed."
[1] NA
[1] "Running query idx 1068 with cid 9916237"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9916237\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9916237_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9916237"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9916237_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9916237_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9916237_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "572 completed."
[1] NA
[1] "Running query idx 1069 with cid 638340"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"638340\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_638340_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"638340"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_638340_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_638340_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_638340_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "573 completed."
[1] NA
[1] "Running query idx 1070 with cid 452977"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"452977\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_452977_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"452977"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_452977_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_452977_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_452977_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "574 completed."
[1] NA
[1] "Running query idx 1071 with cid 5284456"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284456\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284456_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284456"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284456_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284456_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284456_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "575 completed."
[1] NA
[1] "Running query idx 1072 with cid 134767951"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134767951\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134767951_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134767951"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134767951_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134767951_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134767951_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "576 completed."
[1] NA
[1] "Running query idx 1073 with cid 71815"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71815\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71815_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71815"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71815_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71815_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71815_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "577 completed."
[1] NA
[1] "Running query idx 1074 with cid 26757"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"26757\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_26757_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_26757_transformations: download successful"
$TP_File_Name
[1] "CID_26757_transformations.csv"

$TP_Unique_CIDs
[1]   200718 11447032

[1] "578 completed."
[1]   200718 11447032
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 1075 with cid 68617"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"68617\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_68617_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"68617"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_68617_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_68617_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_68617_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "579 completed."
[1] NA
[1] "Running query idx 1076 with cid 5206"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5206\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5206_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5206"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5206_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5206_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5206_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "580 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1077 with cid 135398744"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398744\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398744_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398744"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398744_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398744_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398744_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "581 completed."
[1] NA
[1] "Running query idx 1078 with cid 5312125"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5312125\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5312125_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5312125"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5312125_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5312125_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5312125_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "582 completed."
[1] NA
[1] "Running query idx 1079 with cid 441244"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"441244\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_441244_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"441244"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_441244_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_441244_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_441244_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "583 completed."
[1] NA
[1] "Running query idx 1080 with cid 452254"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"452254\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_452254_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"452254"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_452254_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_452254_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_452254_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "584 completed."
[1] NA
[1] "Running query idx 1081 with cid 31011"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"31011\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_31011_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"31011"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_31011_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_31011_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_31011_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "585 completed."
[1] NA
[1] "Running query idx 1082 with cid 5459124"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5459124\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5459124_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5459124"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5459124_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5459124_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5459124_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "586 completed."
[1] NA
[1] "Running query idx 1083 with cid 5215"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5215\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5215_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5215_transformations: download successful"
$TP_File_Name
[1] "CID_5215_transformations.csv"

$TP_Unique_CIDs
[1]  5215 64952

[1] "587 completed."
[1]  5215 64952
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 1084 with cid 54454"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54454\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54454_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54454"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54454_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54454_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54454_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "588 completed."
[1] NA
[1] "Running query idx 1085 with cid 5284616"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284616\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284616_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284616"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284616_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284616_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284616_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "589 completed."
[1] NA
[1] "Running query idx 1086 with cid 4369359"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4369359\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4369359_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4369359"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4369359_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4369359_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4369359_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "590 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1087 with cid 23668827"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23668827\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23668827_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23668827"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23668827_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23668827_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23668827_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "591 completed."
[1] NA
[1] "Running query idx 1088 with cid 23663870"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23663870\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23663870_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23663870"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23663870_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23663870_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23663870_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "592 completed."
[1] NA
[1] "Running query idx 1089 with cid 154059"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"154059\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_154059_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"154059"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_154059_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_154059_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_154059_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "593 completed."
[1] NA
[1] "Running query idx 1090 with cid 216457"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"216457\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_216457_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"216457"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_216457_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_216457_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_216457_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "594 completed."
[1] NA
[1] "Running query idx 1091 with cid 16132353"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16132353\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16132353_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16132353"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16132353_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16132353_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16132353_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "595 completed."
[1] NA
[1] "Running query idx 1092 with cid 16129706"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16129706\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16129706_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16129706"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16129706_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16129706_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16129706_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "596 completed."
[1] NA
[1] "Running query idx 1093 with cid 16129681"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16129681\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16129681_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16129681"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16129681_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16129681_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16129681_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "597 completed."
[1] NA
[1] "Running query idx 1094 with cid 16161315"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16161315\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16161315_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16161315"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16161315_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16161315_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16161315_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "598 completed."
[1] NA
[1] "Running query idx 1095 with cid 44291156"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44291156\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44291156_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44291156"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44291156_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44291156_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44291156_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "599 completed."
[1] NA
[1] "Running query idx 1096 with cid 44377662"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44377662\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44377662_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44377662"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44377662_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44377662_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44377662_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "600 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1097 with cid 216239"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"216239\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_216239_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"216239"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_216239_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_216239_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_216239_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "601 completed."
[1] NA
[1] "Running query idx 1098 with cid 5780"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5780\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5780_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5780"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5780_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5780_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5780_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "602 completed."
[1] NA
[1] "Running query idx 1099 with cid 5253"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5253\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5253_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5253"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5253_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5253_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5253_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "603 completed."
[1] NA
[1] "Running query idx 1100 with cid 5833"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5833\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5833_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5833"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5833_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5833_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5833_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "604 completed."
[1] NA
[1] "Running query idx 1101 with cid 6918182"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918182\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918182_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918182"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918182_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918182_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918182_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "605 completed."
[1] NA
[1] "Running query idx 1102 with cid 46782942"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"46782942\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_46782942_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"46782942"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_46782942_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_46782942_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_46782942_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "606 completed."
[1] NA
[1] "Running query idx 1103 with cid 24871329"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24871329\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24871329_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24871329"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24871329_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24871329_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24871329_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "607 completed."
[1] NA
[1] "Running query idx 1104 with cid 9806615"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9806615\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9806615_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9806615"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9806615_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9806615_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9806615_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "608 completed."
[1] NA
[1] "Running query idx 1105 with cid 3052774"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3052774\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3052774_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3052774"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3052774_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3052774_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3052774_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "609 completed."
[1] NA
[1] "Running query idx 1106 with cid 133701186"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"133701186\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_133701186_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"133701186"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_133701186_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_133701186_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_133701186_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "610 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1107 with cid 41693"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"41693\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_41693_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"41693"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_41693_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_41693_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_41693_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "611 completed."
[1] NA
[1] "Running query idx 1108 with cid 6918585"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918585\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918585_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918585"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918585_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918585_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918585_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "612 completed."
[1] NA
[1] "Running query idx 1109 with cid 74030550"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"74030550\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_74030550_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"74030550"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_74030550_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_74030550_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_74030550_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "613 completed."
[1] NA
[1] "Running query idx 1110 with cid 70693550"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"70693550\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_70693550_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"70693550"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_70693550_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_70693550_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_70693550_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "614 completed."
[1] NA
[1] "Running query idx 1111 with cid 5318"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5318\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5318_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5318"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5318_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5318_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5318_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "615 completed."
[1] NA
[1] "Running query idx 1112 with cid 5329"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5329\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5329_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5329_transformations: download successful"
$TP_File_Name
[1] "CID_5329_transformations.csv"

$TP_Unique_CIDs
[1]  5329 65280

[1] "616 completed."
[1]  5329 65280
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 1113 with cid 5339"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5339\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5339_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5339"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5339_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5339_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5339_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "617 completed."
[1] NA
[1] "Running query idx 1114 with cid 17358"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"17358\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_17358_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"17358"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_17358_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_17358_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_17358_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "618 completed."
[1] NA
[1] "Running query idx 1115 with cid 5355"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5355\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5355_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5355"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5355_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5355_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5355_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "619 completed."
[1] NA
[1] "Running query idx 1116 with cid 5358"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5358\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5358_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5358"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5358_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5358_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5358_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "620 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1117 with cid 5329102"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5329102\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5329102_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5329102"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5329102_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5329102_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5329102_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "621 completed."
[1] NA
[1] "Running query idx 1118 with cid 5314"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5314\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5314_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5314"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5314_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5314_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5314_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "622 completed."
[1] NA
[1] "Running query idx 1119 with cid 5283734"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5283734\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5283734_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5283734"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5283734_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5283734_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5283734_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "623 completed."
[1] NA
[1] "Running query idx 1120 with cid 445643"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"445643\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_445643_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"445643"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_445643_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_445643_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_445643_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "624 completed."
[1] NA
[1] "Running query idx 1121 with cid 110635"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"110635\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_110635_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"110635"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_110635_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_110635_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_110635_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "625 completed."
[1] NA
[1] "Running query idx 1122 with cid 11001318"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11001318\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11001318_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11001318"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11001318_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11001318_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11001318_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "626 completed."
[1] NA
[1] "Running query idx 1123 with cid 2733526"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2733526\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2733526_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"2733526"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_2733526_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2733526_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_2733526_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "627 completed."
[1] NA
[1] "Running query idx 1124 with cid 129211"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129211\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129211_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129211"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129211_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129211_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129211_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "628 completed."
[1] NA
[1] "Running query idx 1125 with cid 9838022"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9838022\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9838022_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9838022"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9838022_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9838022_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9838022_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "629 completed."
[1] NA
[1] "Running query idx 1126 with cid 5386"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5386\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5386_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5386"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5386_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5386_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5386_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "630 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1127 with cid 65999"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"65999\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_65999_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"65999"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_65999_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_65999_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_65999_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "631 completed."
[1] NA
[1] "Running query idx 1128 with cid 171758"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"171758\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_171758_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"171758"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_171758_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_171758_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_171758_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "632 completed."
[1] NA
[1] "Running query idx 1129 with cid 5394"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5394\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5394_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5394"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5394_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5394_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5394_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "633 completed."
[1] NA
[1] "Running query idx 1130 with cid 6918289"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918289\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918289_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918289"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918289_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918289_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918289_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "634 completed."
[1] NA
[1] "Running query idx 1131 with cid 18293306"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"18293306\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_18293306_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"18293306"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_18293306_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_18293306_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_18293306_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "635 completed."
[1] NA
[1] "Running query idx 1132 with cid 23724530"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23724530\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23724530_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23724530"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23724530_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23724530_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23724530_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "636 completed."
[1] NA
[1] "Running query idx 1133 with cid 148191"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"148191\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_148191_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"148191"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_148191_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_148191_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_148191_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "637 completed."
[1] NA
[1] "Running query idx 1134 with cid 53486199"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53486199\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53486199_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53486199"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53486199_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53486199_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53486199_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "638 completed."
[1] NA
[1] "Running query idx 1135 with cid 71433778"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71433778\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71433778_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71433778"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71433778_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71433778_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71433778_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "639 completed."
[1] NA
[1] "Running query idx 1136 with cid 129317846"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129317846\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129317846_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129317846"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129317846_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129317846_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129317846_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "640 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1137 with cid 23375915"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"23375915\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_23375915_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"23375915"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_23375915_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_23375915_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_23375915_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "641 completed."
[1] NA
[1] "Running query idx 1138 with cid 5938194"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5938194\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5938194_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5938194"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5938194_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5938194_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5938194_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "642 completed."
[1] NA
[1] "Running query idx 1139 with cid 71312019"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71312019\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71312019_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71312019"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71312019_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71312019_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71312019_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "643 completed."
[1] NA
[1] "Running query idx 1140 with cid 145712265"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"145712265\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_145712265_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"145712265"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_145712265_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_145712265_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_145712265_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "644 completed."
[1] NA
[1] "Running query idx 1141 with cid 137295275"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"137295275\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_137295275_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"137295275"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_137295275_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_137295275_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_137295275_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "645 completed."
[1] NA
[1] "Running query idx 1142 with cid 132274070"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"132274070\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_132274070_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"132274070"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_132274070_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_132274070_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_132274070_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "646 completed."
[1] NA
[1] "Running query idx 1143 with cid 54608508"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54608508\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54608508_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54608508"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54608508_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54608508_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54608508_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "647 completed."
[1] NA
[1] "Running query idx 1144 with cid 71296107"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71296107\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71296107_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71296107"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71296107_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71296107_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71296107_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "648 completed."
[1] NA
[1] "Running query idx 1145 with cid 86287409"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"86287409\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_86287409_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"86287409"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_86287409_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_86287409_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_86287409_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "649 completed."
[1] NA
[1] "Running query idx 1146 with cid 9876533"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9876533\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9876533_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9876533"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9876533_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9876533_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9876533_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "650 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1147 with cid 22829018"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"22829018\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_22829018_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"22829018"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_22829018_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_22829018_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_22829018_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "651 completed."
[1] NA
[1] "Running query idx 1148 with cid 24847874"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24847874\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24847874_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24847874"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24847874_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24847874_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24847874_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "652 completed."
[1] NA
[1] "Running query idx 1149 with cid 5481350"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5481350\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5481350_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5481350"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5481350_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5481350_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5481350_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "653 completed."
[1] NA
[1] "Running query idx 1150 with cid 54677971"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54677971\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54677971_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54677971"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54677971_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54677971_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54677971_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "654 completed."
[1] NA
[1] "Running query idx 1151 with cid 5401"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5401\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5401_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5401"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5401_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5401_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5401_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "655 completed."
[1] NA
[1] "Running query idx 1152 with cid 1549008"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1549008\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1549008_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1549008"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1549008_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1549008_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1549008_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "656 completed."
[1] NA
[1] "Running query idx 1153 with cid 54684141"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54684141\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54684141_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54684141"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54684141_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54684141_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54684141_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "657 completed."
[1] NA
[1] "Running query idx 1154 with cid 72081"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"72081\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_72081_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"72081"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_72081_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_72081_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_72081_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "658 completed."
[1] NA
[1] "Running query idx 1155 with cid 6013"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6013\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6013_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6013"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6013_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6013_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6013_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "659 completed."
[1] NA
[1] "Running query idx 1156 with cid 5411"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5411\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5411_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5411"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5411_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5411_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5411_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "660 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1157 with cid 54675776"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54675776\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54675776_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54675776"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54675776_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54675776_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54675776_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "661 completed."
[1] NA
[1] "Running query idx 1158 with cid 5419"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5419\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5419_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5419"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5419_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5419_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5419_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "662 completed."
[1] NA
[1] "Running query idx 1159 with cid 5426"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5426\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5426_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5426"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5426_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5426_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5426_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "663 completed."
[1] NA
[1] "Running query idx 1160 with cid 2153"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2153\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2153_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2153_transformations: download successful"
$TP_File_Name
[1] "CID_2153_transformations.csv"

$TP_Unique_CIDs
[1] 2153

[1] "664 completed."
[1] 2153
[1] "Running query idx 1161 with cid 1349907"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1349907\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1349907_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1349907"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1349907_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1349907_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1349907_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "665 completed."
[1] NA
[1] "Running query idx 1162 with cid 1130"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"1130\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_1130_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"1130"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_1130_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_1130_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_1130_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "666 completed."
[1] NA
[1] "Running query idx 1163 with cid 6042"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6042\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6042_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6042"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6042_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6042_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6042_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "667 completed."
[1] NA
[1] "Running query idx 1164 with cid 6202"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6202\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6202_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6202"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6202_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6202_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6202_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "668 completed."
[1] NA
[1] "Running query idx 1165 with cid 27200"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"27200\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_27200_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"27200"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_27200_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_27200_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_27200_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "669 completed."
[1] NA
[1] "Running query idx 1166 with cid 5453"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5453\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5453_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5453"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5453_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5453_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5453_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "670 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1167 with cid 60648"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60648\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60648_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60648"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60648_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60648_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60648_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "671 completed."
[1] NA
[1] "Running query idx 1168 with cid 68870"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"68870\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_68870_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"68870"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_68870_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_68870_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_68870_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "672 completed."
[1] NA
[1] "Running query idx 1169 with cid 5467"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5467\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5467_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5467"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5467_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5467_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5467_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "673 completed."
[1] NA
[1] "Running query idx 1170 with cid 444008"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"444008\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_444008_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"444008"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_444008_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_444008_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_444008_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "674 completed."
[1] NA
[1] "Running query idx 1171 with cid 9871419"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9871419\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9871419_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9871419"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9871419_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9871419_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9871419_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "675 completed."
[1] NA
[1] "Running query idx 1172 with cid 5472"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5472\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5472_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5472_transformations: download successful"
$TP_File_Name
[1] "CID_5472_transformations.csv"

$TP_Unique_CIDs
[1] 5472

[1] "676 completed."
[1] 5472
[1] "Running query idx 1173 with cid 54686904"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54686904\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54686904_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54686904"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54686904_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54686904_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54686904_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "677 completed."
[1] NA
[1] "Running query idx 1174 with cid 33624"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"33624\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_33624_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"33624"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_33624_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_33624_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_33624_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "678 completed."
[1] NA
[1] "Running query idx 1175 with cid 5479"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5479\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5479_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5479"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5479_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5479_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5479_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "679 completed."
[1] NA
[1] "Running query idx 1176 with cid 5487426"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5487426\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5487426_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5487426"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5487426_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5487426_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5487426_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "680 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1177 with cid 54682461"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54682461\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54682461_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54682461"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54682461_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54682461_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54682461_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "681 completed."
[1] NA
[1] "Running query idx 1178 with cid 60947"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60947\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60947_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60947"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60947_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60947_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60947_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "682 completed."
[1] NA
[1] "Running query idx 1179 with cid 5487"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5487\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5487_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5487"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5487_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5487_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5487_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "683 completed."
[1] NA
[1] "Running query idx 1180 with cid 36294"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"36294\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_36294_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"36294"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_36294_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_36294_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_36294_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "684 completed."
[1] NA
[1] "Running query idx 1181 with cid 9926791"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9926791\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9926791_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9926791"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9926791_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9926791_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9926791_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "685 completed."
[1] NA
[1] "Running query idx 1182 with cid 4659569"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"4659569\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_4659569_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"4659569"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_4659569_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_4659569_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_4659569_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "686 completed."
[1] NA
[1] "Running query idx 1183 with cid 443879"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"443879\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_443879_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"443879"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_443879_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_443879_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_443879_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "687 completed."
[1] NA
[1] "Running query idx 1184 with cid 216237"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"216237\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_216237_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"216237"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_216237_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_216237_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_216237_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "688 completed."
[1] NA
[1] "Running query idx 1185 with cid 5284627"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284627\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284627_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284627"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284627_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284627_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284627_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "689 completed."
[1] NA
[1] "Running query idx 1186 with cid 60700"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60700\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60700_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60700"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60700_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60700_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60700_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "690 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1187 with cid 41781"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"41781\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_41781_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"41781"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_41781_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_41781_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_41781_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "691 completed."
[1] NA
[1] "Running query idx 1188 with cid 3641960"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3641960\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3641960_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3641960"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3641960_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3641960_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3641960_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "692 completed."
[1] NA
[1] "Running query idx 1189 with cid 108150"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"108150\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_108150_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"108150"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_108150_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_108150_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_108150_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "693 completed."
[1] NA
[1] "Running query idx 1190 with cid 33741"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"33741\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_33741_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_33741_transformations: download successful"
$TP_File_Name
[1] "CID_33741_transformations.csv"

$TP_Unique_CIDs
[1]  198555 3056578 9861699   33741

[1] "694 completed."
[1]  198555 3056578 9861699   33741
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 1191 with cid 5524"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5524\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5524_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5524"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5524_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5524_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5524_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "695 completed."
[1] NA
[1] "Running query idx 1192 with cid 5526"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5526\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5526_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5526"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5526_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5526_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5526_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "696 completed."
[1] NA
[1] "Running query idx 1193 with cid 5282226"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5282226\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5282226_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5282226"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5282226_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5282226_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5282226_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "697 completed."
[1] NA
[1] "Running query idx 1194 with cid 5533"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5533\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5533_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5533"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5533_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5533_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5533_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "698 completed."
[1] NA
[1] "Running query idx 1195 with cid 444795"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"444795\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_444795_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"444795"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_444795_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_444795_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_444795_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "699 completed."
[1] NA
[1] "Running query idx 1196 with cid 31307"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"31307\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_31307_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"31307"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_31307_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_31307_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_31307_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "700 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1197 with cid 5556"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5556\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5556_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5556"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5556_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5556_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5556_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "701 completed."
[1] NA
[1] "Running query idx 1198 with cid 6256"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6256\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6256_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6256"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6256_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6256_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6256_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "702 completed."
[1] NA
[1] "Running query idx 1199 with cid 5572"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5572\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5572_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5572"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5572_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5572_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5572_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "703 completed."
[1] NA
[1] "Running query idx 1200 with cid 21109"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"21109\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_21109_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"21109"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_21109_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_21109_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_21109_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "704 completed."
[1] NA
[1] "Running query idx 1201 with cid 5578"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5578\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5578_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5578"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5578_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5578_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5578_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "705 completed."
[1] NA
[1] "Running query idx 1202 with cid 25074470"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"25074470\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_25074470_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"25074470"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_25074470_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_25074470_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_25074470_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "706 completed."
[1] NA
[1] "Running query idx 1203 with cid 5593"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5593\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5593_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5593"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5593_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5593_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5593_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "707 completed."
[1] NA
[1] "Running query idx 1204 with cid 656665"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"656665\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_656665_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"656665"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_656665_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_656665_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_656665_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "708 completed."
[1] NA
[1] "Running query idx 1205 with cid 5596"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5596\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5596_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5596"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5596_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5596_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5596_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "709 completed."
[1] NA
[1] "Running query idx 1206 with cid 5284632"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5284632\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5284632_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5284632"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5284632_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5284632_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5284632_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "710 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1207 with cid 5486699"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5486699\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5486699_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5486699"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5486699_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5486699_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5486699_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "711 completed."
[1] NA
[1] "Running query idx 1208 with cid 11519069"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11519069\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11519069_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11519069"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11519069_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11519069_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11519069_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "712 completed."
[1] NA
[1] "Running query idx 1209 with cid 5639"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5639\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5639_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5639"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5639_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5639_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5639_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "713 completed."
[1] NA
[1] "Running query idx 1210 with cid 31401"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"31401\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_31401_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"31401"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_31401_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_31401_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_31401_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "714 completed."
[1] NA
[1] "Running query idx 1211 with cid 135398742"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135398742\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135398742_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135398742"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135398742_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135398742_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135398742_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "715 completed."
[1] NA
[1] "Running query idx 1212 with cid 135413535"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135413535\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135413535_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135413535"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135413535_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135413535_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135413535_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "716 completed."
[1] NA
[1] "Running query idx 1213 with cid 3121"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3121\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3121_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3121"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3121_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3121_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3121_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "717 completed."
[1] NA
[1] "Running query idx 1214 with cid 60846"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60846\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60846_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60846_transformations: download successful"
$TP_File_Name
[1] "CID_60846_transformations.csv"

$TP_Unique_CIDs
[1] 19388302

[1] "718 completed."
[1] 19388302
[1] "Running query idx 1215 with cid 14969"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"14969\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_14969_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"14969"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_14969_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_14969_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_14969_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "719 completed."
[1] NA
[1] "Running query idx 1216 with cid 135400189"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135400189\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135400189_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135400189"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135400189_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135400189_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135400189_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "720 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1217 with cid 170361"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"170361\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_170361_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"170361"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_170361_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_170361_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_170361_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "721 completed."
[1] NA
[1] "Running query idx 1218 with cid 5310966"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5310966\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5310966_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5310966"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5310966_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5310966_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5310966_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "722 completed."
[1] NA
[1] "Running query idx 1219 with cid 53315056"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"53315056\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_53315056_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"53315056"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_53315056_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_53315056_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_53315056_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "723 completed."
[1] NA
[1] "Running query idx 1220 with cid 42611257"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"42611257\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_42611257_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"42611257"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_42611257_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_42611257_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_42611257_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "724 completed."
[1] NA
[1] "Running query idx 1221 with cid 5656"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5656\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5656_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5656_transformations: download successful"
$TP_File_Name
[1] "CID_5656_transformations.csv"

$TP_Unique_CIDs
[1]  3501942   125017  9795857  3451347 76559643     5656

[1] "725 completed."
[1]  3501942   125017  9795857  3451347 76559643     5656
Warning message in if (is.na(cids_successors)) {:
“the condition has length > 1 and only the first element will be used”
[1] "Running query idx 1222 with cid 2520"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"2520\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_2520_transformations.csv\"}"
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_2520_transformations: download successful"
$TP_File_Name
[1] "CID_2520_transformations.csv"

$TP_Unique_CIDs
[1] 93168

[1] "726 completed."
[1] 93168
[1] "Running query idx 1223 with cid 9930049"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"9930049\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_9930049_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"9930049"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_9930049_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_9930049_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_9930049_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "727 completed."
[1] NA
[1] "Running query idx 1224 with cid 5665"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5665\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5665_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5665"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5665_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5665_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5665_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "728 completed."
[1] NA
[1] "Running query idx 1225 with cid 10184665"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"10184665\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_10184665_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"10184665"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_10184665_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_10184665_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_10184665_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "729 completed."
[1] NA
[1] "Running query idx 1226 with cid 6918537"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6918537\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6918537_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6918537"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6918537_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6918537_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6918537_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "730 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1227 with cid 11077541"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11077541\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11077541_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11077541"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11077541_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11077541_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11077541_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "731 completed."
[1] NA
[1] "Running query idx 1228 with cid 5251896"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5251896\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5251896_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5251896"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5251896_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5251896_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5251896_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "732 completed."
[1] NA
[1] "Running query idx 1229 with cid 24848920"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24848920\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24848920_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24848920"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24848920_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24848920_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24848920_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "733 completed."
[1] NA
[1] "Running query idx 1230 with cid 241903"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"241903\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_241903_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"241903"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_241903_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_241903_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_241903_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "734 completed."
[1] NA
[1] "Running query idx 1231 with cid 13342"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"13342\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_13342_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"13342"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_13342_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_13342_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_13342_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "735 completed."
[1] NA
[1] "Running query idx 1232 with cid 3823887"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3823887\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3823887_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3823887"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3823887_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3823887_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3823887_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "736 completed."
[1] NA
[1] "Running query idx 1233 with cid 44417235"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44417235\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44417235_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44417235"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44417235_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44417235_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44417235_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "737 completed."
[1] NA
[1] "Running query idx 1234 with cid 6710780"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6710780\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6710780_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6710780"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6710780_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6710780_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6710780_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "738 completed."
[1] NA
[1] "Running query idx 1235 with cid 11104792"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"11104792\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_11104792_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"11104792"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_11104792_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_11104792_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_11104792_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "739 completed."
[1] NA
[1] "Running query idx 1236 with cid 129009934"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"129009934\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_129009934_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"129009934"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_129009934_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_129009934_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_129009934_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "740 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1237 with cid 133126830"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"133126830\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_133126830_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"133126830"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_133126830_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_133126830_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_133126830_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "741 completed."
[1] NA
[1] "Running query idx 1238 with cid 5978"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5978\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5978_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5978"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5978_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5978_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5978_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "742 completed."
[1] NA
[1] "Running query idx 1239 with cid 5388993"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5388993\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5388993_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5388993"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5388993_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5388993_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5388993_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "743 completed."
[1] NA
[1] "Running query idx 1240 with cid 3717450"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3717450\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3717450_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3717450"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3717450_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3717450_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3717450_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "744 completed."
[1] NA
[1] "Running query idx 1241 with cid 6324671"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"6324671\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_6324671_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"6324671"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_6324671_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_6324671_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_6324671_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "745 completed."
[1] NA
[1] "Running query idx 1242 with cid 45358158"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"45358158\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_45358158_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"45358158"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_45358158_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_45358158_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_45358158_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "746 completed."
[1] NA
[1] "Running query idx 1243 with cid 122172881"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"122172881\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_122172881_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"122172881"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_122172881_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_122172881_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_122172881_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "747 completed."
[1] NA
[1] "Running query idx 1244 with cid 71296921"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71296921\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71296921_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71296921"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71296921_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71296921_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71296921_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "748 completed."
[1] NA
[1] "Running query idx 1245 with cid 62313"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"62313\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_62313_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"62313"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_62313_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_62313_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_62313_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "749 completed."
[1] NA
[1] "Running query idx 1246 with cid 134755071"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"134755071\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_134755071_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"134755071"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_134755071_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_134755071_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_134755071_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "750 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1247 with cid 138114288"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"138114288\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_138114288_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"138114288"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_138114288_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_138114288_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_138114288_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "751 completed."
[1] NA
[1] "Running query idx 1248 with cid 40839"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"40839\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_40839_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"40839"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_40839_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_40839_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_40839_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "752 completed."
[1] NA
[1] "Running query idx 1249 with cid 5311497"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311497\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311497_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311497"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311497_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311497_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311497_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "753 completed."
[1] NA
[1] "Running query idx 1250 with cid 60780"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60780\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60780_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60780"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60780_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60780_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60780_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "754 completed."
[1] NA
[1] "Running query idx 1251 with cid 13200033"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"13200033\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_13200033_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"13200033"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_13200033_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_13200033_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_13200033_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "755 completed."
[1] NA
[1] "Running query idx 1252 with cid 5672"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5672\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5672_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5672"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5672_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5672_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5672_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "756 completed."
[1] NA
[1] "Running query idx 1253 with cid 44424639"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"44424639\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_44424639_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"44424639"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_44424639_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_44424639_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_44424639_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "757 completed."
[1] NA
[1] "Running query idx 1254 with cid 71296871"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71296871\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71296871_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71296871"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71296871_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71296871_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71296871_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "758 completed."
[1] NA
[1] "Running query idx 1255 with cid 71752961"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71752961\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71752961_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71752961"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71752961_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71752961_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71752961_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "759 completed."
[1] NA
[1] "Running query idx 1256 with cid 24776445"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"24776445\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_24776445_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"24776445"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_24776445_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_24776445_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_24776445_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "760 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1257 with cid 71616"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"71616\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_71616_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"71616"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_71616_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_71616_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_71616_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "761 completed."
[1] NA
[1] "Running query idx 1258 with cid 54678486"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"54678486\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_54678486_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"54678486"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_54678486_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_54678486_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_54678486_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "762 completed."
[1] NA
[1] "Running query idx 1259 with cid 5709"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5709\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5709_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5709"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5709_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5709_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5709_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "763 completed."
[1] NA
[1] "Running query idx 1260 with cid 8969"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"8969\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_8969_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"8969"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_8969_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_8969_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_8969_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "764 completed."
[1] NA
[1] "Running query idx 1261 with cid 35370"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"35370\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_35370_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"35370"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_35370_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_35370_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_35370_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "765 completed."
[1] NA
[1] "Running query idx 1262 with cid 92400"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"92400\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_92400_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"92400"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_92400_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_92400_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_92400_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "766 completed."
[1] NA
[1] "Running query idx 1263 with cid 68740"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"68740\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_68740_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"68740"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_68740_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_68740_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_68740_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "767 completed."
[1] NA
[1] "Running query idx 1264 with cid 60857"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"60857\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_60857_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"60857"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_60857_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_60857_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_60857_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "768 completed."
[1] NA
[1] "Running query idx 1265 with cid 5732"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5732\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5732_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5732"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5732_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5732_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5732_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "769 completed."
[1] NA
[1] "Running query idx 1266 with cid 5734"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5734\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5734_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5734"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5734_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5734_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5734_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "770 completed."
[1] NA
[1] "pause for 20 seconds "
[1] "Running query idx 1267 with cid 5735"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5735\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5735_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5735"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5735_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5735_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5735_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "771 completed."
[1] NA
[1] "Running query idx 1268 with cid 5311507"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5311507\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5311507_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5311507"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5311507_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5311507_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5311507_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "772 completed."
[1] NA
[1] "pause for 20 seconds "
Time difference of 40.73673 mins

1262 queries (CIDs) corresponding to 810 unique compounds were successfully completed in 2 batches and were written to the folder "output_TP_files" within the working directory. TP information for each compound, where available, was written out as csv files, one csv file per parent.

These csv outputs must eventually be merged to create a single list of Transformation Products for Suspect Screening.

Before merging, account for the 6 compounds stored in no_cids_avail which had no CIDs available from the ID Exchange (possible PubChem issue). These compounds were manually searched in PubChem and their CIDs were obtained below:

In [40]:
#look into cases where cid was NA
no_cids_avail
A data.frame: 6 × 2
input_name_CNScid
<fct><int>
287cisplatin NA
325dabigatran etexilate NA
327dalbavancin NA
353dichlorobenzyl alcoholNA
711magaldrate NA
850oxaliplatin NA
In [247]:
#manually extract their CIDs 
no_cids_avail$cid <- c(5702198,135565674,16134627,15684,3086011,43805) #2,4-dcbal

Additional rows (CIDs) must be added for the compound dichlorobenzyl alcohol because it has multiple isomers. Transformation Product information can be stored in just one of the several isomers, so all isomers must be accounted for.

In [248]:
#add rows for dichlorobenzyl alcohol (isomers)
dcbal_isomer1 <-data.frame("dichlorobenzyl alcohol","43236") #3,5
dcbal_isomer2 <-data.frame("dichlorobenzyl alcohol","15728") #3,4
dcbal_isomer3 <-data.frame("dichlorobenzyl alcohol","118604") #2,5
 

names(dcbal_isomer1)<-c("input_name_CNS","cid")  
names(dcbal_isomer2)<-c("input_name_CNS","cid")  
names(dcbal_isomer3)<-c("input_name_CNS","cid")  

rownames(dcbal_isomer1) <- 1269
rownames(dcbal_isomer2) <- 1270
rownames(dcbal_isomer3) <- 1271

no_cids_avail_man_cur <- rbind(no_cids_avail,dcbal_isomer1,dcbal_isomer2,dcbal_isomer3)
In [249]:
no_cids_avail_man_cur
A data.frame: 9 × 2
input_name_CNScid
<fct><chr>
287cisplatin 5702198
325dabigatran etexilate 135565674
327dalbavancin 16134627
353dichlorobenzyl alcohol15684
711magaldrate 3086011
850oxaliplatin 43805
1269dichlorobenzyl alcohol43236
1270dichlorobenzyl alcohol15728
1271dichlorobenzyl alcohol118604
In [50]:
#small list, can query without chunking 
start.time <- Sys.time()
n_requests <- 0
for (i in rownames(no_cids_avail_man_cur)){
    print(paste0("Running query rowname ", i, " with cid ", no_cids_avail_man_cur[i,"cid"]))
    n_requests <- n_requests + 1
    getPcCand.trans(no_cids_avail_man_cur[i,"cid"])
    print(paste0(n_requests," completed."))
}
end.time <- Sys.time()
time.taken <- end.time - start.time
time.taken
[1] "Running query rowname 287 with cid 5702198"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"5702198\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_5702198_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"5702198"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_5702198_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_5702198_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_5702198_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "1 completed."
[1] "Running query rowname 325 with cid 135565674"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"135565674\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_135565674_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"135565674"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_135565674_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_135565674_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_135565674_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "2 completed."
[1] "Running query rowname 327 with cid 16134627"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"16134627\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_16134627_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"16134627"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_16134627_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_16134627_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_16134627_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "3 completed."
[1] "Running query rowname 353 with cid 15684"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"15684\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_15684_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"15684"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_15684_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_15684_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_15684_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "4 completed."
[1] "Running query rowname 711 with cid 3086011"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"3086011\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_3086011_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"3086011"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_3086011_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_3086011_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_3086011_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "5 completed."
[1] "Running query rowname 850 with cid 43805"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"43805\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_43805_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"43805"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_43805_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_43805_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_43805_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "6 completed."
[1] "Running query rowname 1269 with cid 43236"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"43236\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_43236_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"43236"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_43236_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_43236_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_43236_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "7 completed."
[1] "Running query rowname 1270 with cid 15728"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"15728\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_15728_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"15728"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_15728_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_15728_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_15728_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "8 completed."
[1] "Running query rowname 1271 with cid 118604"
[1] "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={\"download\":\"*\",\"collection\":\"transformations\",\"where\":{\"ands\":[{\"cid\":\"118604\"}]},\"order\":[\"relevancescore,desc\"],\"start\":1,\"limit\":10000,\"downloadfilename\":\"CID_118604_transformations.csv\"}"
Warning message in readLines(con, n = 1):
“incomplete final line found on 'https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={"download":"*","collection":"transformations","where":{"ands":[{"cid":"118604"}]},"order":["relevancescore,desc"],"start":1,"limit":10000,"downloadfilename":"CID_118604_transformations.csv"}'”
[1] "Output directory already exists, writing files to output_TP_files."
[1] "CID_118604_transformations: Warning: no hits found satisfying your input query criteria."
$TP_File_Name
[1] "CID_118604_transformations.csv"

$TP_Unique_CIDs
[1] NA

[1] "9 completed."
Time difference of 11.76756 secs

Including these manually curated CIDs, a total of 1262+9=1271 queries (CIDs) corresponding to 810+6=816 unique compounds were successfully completed in 2+1=3 batches and were written to the folder "output_TP_files" (renamed "output_TP_files_20200930_816_cns_mappedDashboard_1262_cid_synonyms").

These outputs must be merged to create a single list of Transformation Products for Suspect Screening.

Merge TP outputs and prepare list for Suspect Screening

In [46]:
###merge tps across all runs
merged_tp_suspect_list <- list.files(path=file.path(getwd(),"/output_TP_files_20200930_816_cns_mappedDashboard_1262_cid_synonyms"), pattern = "CID*", recursive = TRUE, full.names = TRUE) %>% 
lapply(read_csv) %>%  
bind_rows
Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

Parsed with column specification:
cols(
  gid = col_double(),
  srcid = col_double(),
  cid = col_double(),
  predecessor = col_character(),
  predecessorcid = col_double(),
  transformation = col_character(),
  successor = col_character(),
  successorcid = col_double(),
  evidencedoi = col_character(),
  evidenceref = col_character(),
  sourcecomment = col_character(),
  sourcecommentfull = col_character(),
  datasetdoi = col_character(),
  datasetref = col_character()
)

In [47]:
dim(merged_tp_suspect_list)
#how many names ("successor") and successorids are unique?
length(unique(merged_tp_suspect_list$successorcid))
length(unique(merged_tp_suspect_list$successor))
  1. 75
  2. 14
67
67
In [69]:
length(unique(merged_tp_suspect_list$predecessor))
unique(merged_tp_suspect_list$predecessor)
unique(merged_tp_suspect_list$predecessorcid)
53
  1. 'Clozapine'
  2. 'Cetirizine'
  3. 'Caffeine'
  4. 'Amisulpride'
  5. 'Amisulpride N-oxide'
  6. 'Amitriptyline'
  7. 'Atenolol'
  8. 'Verapamil'
  9. 'Carbamazepine'
  10. 'Deprenyl'
  11. 'Diazepam'
  12. 'Ranitidine'
  13. 'Diclofenac'
  14. 'Fenofibrate'
  15. 'Fentanyl'
  16. 'Tramadol'
  17. 'Tramadol N-oxide'
  18. 'Flunitrazepam'
  19. 'Fluoxetine'
  20. 'Gabapentin'
  21. 'Hydrochlorothiazide'
  22. 'Lidocaine'
  23. 'Lidocaine-N-oxide'
  24. 'Irbesartan'
  25. 'Bezafibrate'
  26. 'Losartan'
  27. 'Meclozine'
  28. 'Metformin'
  29. 'Methadone'
  30. 'Metoprolol'
  31. 'Mianserin'
  32. 'Mianserin-N-oxide'
  33. 'Mirtazapine'
  34. 'N4-Acetylsulfadiazine'
  35. 'Sulfadiazine'
  36. 'Codeine'
  37. 'N4-Acetylsulfamethoxazole'
  38. 'Sulfamethoxazole'
  39. 'Clopidogrel carboxylic acid'
  40. 'Venlafaxine'
  41. 'Venlafaxine N-oxide'
  42. 'Dexamethasone'
  43. 'Hydrocortisone'
  44. 'Prednisolone'
  45. 'Gemcitabine'
  46. 'Valsartan'
  47. 'Emtricitabine'
  48. 'Capecitabine'
  49. 'Oseltamivir'
  50. 'Clarithromycin'
  51. 'Nicotine'
  52. 'Betamethasone'
  53. 'Betamethasone-21-acetate'
  1. 135398737
  2. 1549000
  3. 2519
  4. 2159
  5. 71313372
  6. 2160
  7. 2249
  8. 2520
  9. 2554
  10. 26757
  11. 3016
  12. 3001055
  13. 3033
  14. 3339
  15. 3345
  16. 33741
  17. 9861699
  18. 3380
  19. 3386
  20. 3446
  21. 3639
  22. 3676
  23. 3036923
  24. 3749
  25. 39042
  26. 3961
  27. 4034
  28. 4091
  29. 4095
  30. 4171
  31. 4184
  32. 3085244
  33. 4205
  34. 64952
  35. 5215
  36. 5284371
  37. 65280
  38. 5329
  39. 4129546
  40. 5656
  41. 76559643
  42. 5743
  43. 5754
  44. 5755
  45. 60750
  46. 60846
  47. 60877
  48. 60953
  49. 65028
  50. 84029
  51. 89594
  52. 9782
  53. 443967
In [75]:
#how many parents were actually from cns list?
#need to compare with inputs because of the multilateral way pubchem stores transofmraiton info --> simply counting no. files is wrong
parents_not_from_cns <- setdiff(unique(merged_tp_suspect_list$predecessorcid),query_idex_cns_cids$cid) #elements in x not in y
length(parents_not_from_cns) #these are parents generated as a result of PubChem's storage of TP info
9
In [77]:
parents_not_from_cns
  1. 71313372
  2. 9861699
  3. 3036923
  4. 3085244
  5. 64952
  6. 65280
  7. 4129546
  8. 76559643
  9. 443967
In [76]:
#no. parents originally from CNS
length(unique(merged_tp_suspect_list$predecessorcid))-length(parents_not_from_cns)
44

There must be some duplicates, as 67 != 75.

Inspect the data:

In [9]:
merged_tp_suspect_list[order(merged_tp_suspect_list$predecessor)[9:16],1:9]
A tibble: 8 × 9
gidsrcidcidpredecessorpredecessorcidtransformationsuccessorsuccessorcidevidencedoi
<dbl><dbl><dbl><chr><dbl><chr><chr><dbl><chr>
6443388030 2153Caffeine 2519Demethylation Theophylline 215310.1007/s13361-017-1797-6
6443387930 2519Caffeine 2519Demethylation Theophylline 215310.1007/s13361-017-1797-6
6443388330 60953Capecitabine 60953Multiple 2',3'-di-O-acetyl-5'-deoxy-5-fluorocytidine1180963510.1007/s13361-017-1797-6
6443388530 2554Carbamazepine 2554DihydroxylationCarbamazepine-10,11-dihydro-10,11-dihydroxy 11472510.1007/s13361-017-1797-6
6443388730 2554Carbamazepine 2554Epoxidation Carbamazepine-10,11-epoxide 255510.1007/s13361-017-1797-6
6443388930 2554Carbamazepine 2554Urea derivativeIminostilbene 921210.1007/s13361-017-1797-6
64433893301549000Cetirizine 1549000Cleavage 4-Chlorobenzophenone 865310.1007/s13361-017-1797-6
64433895301549000Cetirizine 1549000N-oxidation Cetirizine N-oxide 4503860210.1007/s13361-017-1797-6

From above, we see Theopyhilline, a TP of Caffeine, is a duplicated in the first 2 rows. Why?

Both Theophylline and Caffeine are listed in the CNS list of parents. Therefore, both CIDs (2153 and 2519) were queried for TPs, reflected in the cid column.

However, PubChem stores Parent-TP relationships in both parent and TP, meaning even if the TP (cid 2153) is queried, info about the parent will come out as a result. More info here: https://git-r3lab.uni.lu/eci/pubchem/-/issues/4

In these cases, these duplicate rows must be removed.

In [10]:
# remove redundant rows - result of PubChem's internal 2-way P-TP mapping
rem2way_merged_tp_suspect_list <- merged_tp_suspect_list[!duplicated(merged_tp_suspect_list[,c('predecessor','successor')]),]
dim(rem2way_merged_tp_suspect_list)
length(unique(rem2way_merged_tp_suspect_list$successorcid))
length(unique(rem2way_merged_tp_suspect_list$successor))
#length(unique(rem2way_merged_tp_suspect_list$predecessorcid))
  1. 72
  2. 14
67
67
In [33]:
myvec <- rem2way_merged_tp_suspect_list$successor
myvec <- as.character(myvec)
sort(myvec)
  1. '1-[(4-Chlorophenyl)phenylmethyl]piperazine'
  2. '1-[(4-Chlorophenyl)phenylmethyl]piperazine'
  3. '2\',2\'-Difluorodeoxyuridine'
  4. '2\',3\'-di-O-acetyl-5\'-deoxy-5-fluorocytidine'
  5. '2-Ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine'
  6. '3-[(4-chlorobenzoyl)amino]propanoic acid'
  7. '4\'-Hydroxydiclofenac'
  8. '4-Amino-6-chloro-1,3-benzenedisulfonamide'
  9. '4-Chlorobenzophenone'
  10. '4-Chlorobenzophenone'
  11. '5-Hydroxydiclofenac'
  12. '7-Aminoflunitrazepam'
  13. '8-Hydroxymirtazapine'
  14. 'Amisulpride'
  15. 'Amisulpride N-oxide'
  16. 'Atenolol acid'
  17. 'Atenolol acid'
  18. 'Atenolol-desisopropyl'
  19. 'Betamethasone'
  20. 'Betamethasone-21-acetate'
  21. 'Carbamazepine-10,11-dihydro-10,11-dihydroxy'
  22. 'Carbamazepine-10,11-epoxide'
  23. 'Cetirizine N-oxide'
  24. 'Chlorothiazide'
  25. 'Clarithromycin N-oxide'
  26. 'Cortisone'
  27. 'Cotinine'
  28. 'D617'
  29. 'Dexamethason-21-acetate'
  30. 'Fenofibric acid'
  31. 'Flucytosine'
  32. 'Gabapentin Related Compound E'
  33. 'Guanylurea'
  34. 'Iminostilbene'
  35. 'Lidocaine'
  36. 'Lidocaine-N-oxide'
  37. 'Mianserin'
  38. 'Mianserin-N-oxide'
  39. 'Morphine'
  40. 'N,N-Didesvenlafaxine'
  41. 'N,O-Didesvenlafaxine'
  42. 'N-Bisdesmethyltramadol'
  43. 'N-Desmethyltramadol'
  44. 'N-Desvenlafaxine'
  45. 'N4-Acetylsulfadiazine'
  46. 'N4-Acetylsulfamethoxazole'
  47. 'Norclozapine'
  48. 'Nordeprenyl'
  49. 'Nordiazepam'
  50. 'Norfentanyl'
  51. 'Norfluoxetine'
  52. 'Norlidocaine'
  53. 'Normianserin'
  54. 'Nornicotine'
  55. 'Nortriptyline'
  56. 'O-Desvenlafaxine'
  57. 'Oseltamivir acid'
  58. 'Prednisone'
  59. 'R-Deprenyl N-oxide'
  60. 'Ranitidine-N-oxide'
  61. 'Ranitidine-S-oxide'
  62. 'Sulfadiazine'
  63. 'Sulfamethoxazole'
  64. 'Theophylline'
  65. 'Ticlopidine'
  66. 'Tramadol'
  67. 'Tramadol N-oxide'
  68. 'Valsartan acid'
  69. 'Valsartan acid'
  70. 'Valsartan acid'
  71. 'Venlafaxine'
  72. 'Venlafaxine N-oxide'
In [44]:
myvec[duplicated(myvec, fromLast=TRUE)]
  1. '4-Chlorobenzophenone'
  2. '1-[(4-Chlorophenyl)phenylmethyl]piperazine'
  3. 'Atenolol acid'
  4. 'Valsartan acid'
  5. 'Valsartan acid'
In [45]:
rem2way_merged_tp_suspect_list[rem2way_merged_tp_suspect_list$successor=="Valsartan acid",]
A tibble: 3 × 14
gidsrcidcidpredecessorpredecessorcidtransformationsuccessorsuccessorcidevidencedoievidencerefsourcecommentsourcecommentfulldatasetdoidatasetref
<dbl><dbl><dbl><chr><dbl><chr><chr><dbl><chr><chr><chr><chr><chr><chr>
6443400730 3749Irbesartan 3749MultipleValsartan acid1938830210.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.
6443403130 3961Losartan 3961MultipleValsartan acid1938830210.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.
644341873060846Valsartan 60846MultipleValsartan acid1938830210.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.
In [296]:
#3 rows which were removed (redundant)
merged_tp_suspect_list[duplicated(merged_tp_suspect_list[,c('predecessor','successor')]),] #those which were removed because of redundancy created by 2-way relationship
A tibble: 3 × 14
gidsrcidcidpredecessorpredecessorcidtransformationsuccessorsuccessorcidevidencedoievidencerefsourcecommentsourcecommentfulldatasetdoidatasetref
<dbl><dbl><dbl><chr><dbl><chr><chr><dbl><chr><chr><chr><chr><chr><chr>
6443387930 2519Caffeine 2519DemethylationTheophylline 215310.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.
6443393130 3016Diazepam 3016DemethylationNordiazepam 299710.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.
64433924305288826Codeine 5284371DemethylationMorphine 528882610.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.

After removing these 3 duplicates, let's analyse the parents' and TPs' 1-1 and many-1 relationships.

In [11]:
###analysis of parents (predecessors)
print(paste("Out of ",nrow(rem2way_merged_tp_suspect_list)," rows, there are ",length(unique(rem2way_merged_tp_suspect_list$predecessor))," unique parent compounds i.e. predecessors.")) 
parents_more_than_one_tp <- rem2way_merged_tp_suspect_list[duplicxxated(rem2way_merged_tp_suspect_list$predecessor,fromLast=TRUE)|duplicated(rem2way_merged_tp_suspect_list$predecessor),]
print(paste("Out of ",nrow(rem2way_merged_tp_suspect_list)," rows, there are ",length(unique(parents_more_than_one_tp$predecessor))," unique parent compounds with more than one TP."))
[1] "Out of  72  rows, there are  53  unique parent compounds i.e. predecessors."
[1] "Out of  72  rows, there are  13  unique parent compounds with more than one TP."
In [12]:
#plot
n_parents_more_than_one_tp <- parents_more_than_one_tp  %>% dplyr::group_by(predecessor) %>% dplyr::summarise(n = n())
ggplot(n_parents_more_than_one_tp,aes(n)) + geom_bar() + scale_y_continuous(breaks=seq(0, 12, 2)) + 
labs(title = "How Many Parents Have >1 TP? ", x="No. TPs", y="No. Parents") +
theme(plot.title = element_text(size=20,hjust=0.5)) + theme(text = element_text(size=16))
In [13]:
#see some examples
parents_more_than_one_tp[1:10,1:8]
A tibble: 10 × 8
gidsrcidcidpredecessorpredecessorcidtransformationsuccessorsuccessorcid
<dbl><dbl><dbl><chr><dbl><chr><chr><dbl>
64433893301549000Cetirizine 1549000Cleavage 4-Chlorobenzophenone 8653
64433895301549000Cetirizine 1549000N-oxidation Cetirizine N-oxide 45038602
64433897301549000Cetirizine 1549000Tertiary amine cleavage1-[(4-Chlorophenyl)phenylmethyl]piperazine 9340
6443384730 2249Atenolol 2249Amide hydrolysis Atenolol acid 62936
6443384930 2249Atenolol 2249Desisopropyl Atenolol-desisopropyl 14211540
6443388530 2554Carbamazepine 2554Dihydroxylation Carbamazepine-10,11-dihydro-10,11-dihydroxy 114725
6443388730 2554Carbamazepine 2554Epoxidation Carbamazepine-10,11-epoxide 2555
6443388930 2554Carbamazepine 2554Urea derivative Iminostilbene 9212
6443392530 26757Deprenyl 26757Demethylation Nordeprenyl 200718
6443392730 26757Deprenyl 26757N-oxidation R-Deprenyl N-oxide 11447032
In [14]:
###analysis of tps (successors)
tps_more_than_one_parent <- rem2way_merged_tp_suspect_list[duplicated(rem2way_merged_tp_suspect_list$successor,fromLast=TRUE)|duplicated(rem2way_merged_tp_suspect_list$successor),] #14
print(paste("There are ",length(unique(tps_more_than_one_parent$successor))," TPs with more than one parent: ", unique(tps_more_than_one_parent$successor))) #7
[1] "There are  4  TPs with more than one parent:  4-Chlorobenzophenone"                      
[2] "There are  4  TPs with more than one parent:  1-[(4-Chlorophenyl)phenylmethyl]piperazine"
[3] "There are  4  TPs with more than one parent:  Atenolol acid"                             
[4] "There are  4  TPs with more than one parent:  Valsartan acid"                            
In [15]:
#plot
n_tps_more_than_one_parent <- tps_more_than_one_parent  %>% dplyr::group_by(successor) %>% dplyr::summarise(n = n())
ggplot(n_tps_more_than_one_parent,aes(n)) + geom_bar() + 
labs(title = "How Many TPs Have >1 Parent? ", x="No. Parents", y="No. TPs") +
theme(plot.title = element_text(size=20,hjust=0.5)) + theme(text = element_text(size=16))  #3 TPs have 2, 1 TP has 3 parents
In [16]:
tps_more_than_one_parent[order(tps_more_than_one_parent$successor),1:8]
A tibble: 9 × 8
gidsrcidcidpredecessorpredecessorcidtransformationsuccessorsuccessorcid
<dbl><dbl><dbl><chr><dbl><chr><chr><dbl>
64433897301549000Cetirizine1549000Tertiary amine cleavage1-[(4-Chlorophenyl)phenylmethyl]piperazine 9340
6443403530 4034Meclozine 4034Tertiary amine cleavage1-[(4-Chlorophenyl)phenylmethyl]piperazine 9340
64433893301549000Cetirizine1549000Cleavage 4-Chlorobenzophenone 8653
6443403330 4034Meclozine 4034Cleavage 4-Chlorobenzophenone 8653
6443384730 2249Atenolol 2249Amide hydrolysis Atenolol acid 62936
6443405330 4171Metoprolol 4171Oxidation Atenolol acid 62936
6443400730 3749Irbesartan 3749Multiple Valsartan acid 19388302
6443403130 3961Losartan 3961Multiple Valsartan acid 19388302
6443418730 60846Valsartan 60846Multiple Valsartan acid 19388302

Thus, 40 parent compounds have a 1-1 relationship with a TP, while 13 parent compounds have 1-many relationships. 4 TPs have more than one parent.

Overall, 816 compounds' TPs were mined in PubChem. Of those 816 compounds, 53 unique parent compounds had TP information, resulting in 67 unique TP compounds for Suspect Screening.



Comparison with Pharmaceutical TPs in the Literature

Besides mining PubChem for TP information, previous studies in the literature can also contain TP information.

Anliker et al. 2020's supplementary information has a list 52 pharmaceutical TPs which they had used as Target Compounds (filename: es9b07085_si_002.xlsx):

"...target analytes [were] spiked...based on their frequent detection in WWTP samples, surface and groundwater and alignment with Swiss consumption and sales data."

These anlikertps will be compared with the original TP list which was generated by mining PubChem (67 unique TPs). Any TPs in the former not in the latter will be added in order to capture as much TP information as possible (i.e. not just PubChem, but also the most recent literature) so as to be able to perform a comprehensive Suspect Screening.

As above, cids for these anlikertps must be obtained in order to compare them with the list obtained from mining PubChem.

anlikertps are given with the following identifiers: Substance Name, CAS No., and Molecular Formula. The substance names were submitted as input to PubChem's Identifier Exchange Service https://pubchem.ncbi.nlm.nih.gov/idexchange/idexchange.cgi with the following settings:

  • Input ID List: Synonyms (Substance Name)
  • Operator Type: Same CID
  • Output IDs: CIDs
  • Output Method: Two column file showing each input-output correspondence.

The output is read in below.

In [ ]:
#The CAS numbers (1 typo: Ranitidine-N-Oxide's CAS was corrected from 738557-20-2 to 73857-20-2) were converted to CIDs using the Identifier Exchange Service https://pubchem.ncbi.nlm.nih.gov/idexchange/idexchange.cgi and the following settings:
In [308]:
tpsanliker <- read.delim("anliker2020/940885460039938799_idexchange_cpd_name_cid.txt",sep="\t",header=FALSE)
colnames(tpsanliker) <- c("synonym","successorcid") #to match column for merging
In [309]:
#check for NAs in successorcid
tpsanliker[is.na(tpsanliker$successorcid),]
A data.frame: 1 × 2
synonymsuccessorcid
<fct><int>
35N4-AcetylsulfadimethoxineNA
In [310]:
#manually add cid where NA in succesorcid (N4-Acetylsulfadimethoxine)
tpsanliker[tpsanliker$synonym=="N4-Acetylsulfadimethoxine","successorcid"] <- 473359  
dim(tpsanliker)
  1. 64
  2. 2
In [313]:
#how many synonyms and successorcids are unique?
sapply(tpsanliker, function(x) length(unique(x)))
synonym
52
successorcid
64

There is one-many relationship between synonym and successorcid, likely because different cids represent different stereochemical forms of the same compound. For now, let's leave these 'duplicates' in and manually curate them later:

In [316]:
tpsanliker[duplicated(tpsanliker$synonym)|duplicated(tpsanliker$synonym,fromLast=TRUE),]
A data.frame: 18 × 2
synonymsuccessorcid
<fct><dbl>
19Clopidogrel Carboxylic Acid 9861403
20Clopidogrel Carboxylic Acid 4129546
23Dexamethasone-21-acetate 236702
24Dexamethasone-21-acetate 3680
25Dexamethasone-21-acetate 5702036
40N-Desmethyl Clarithromycin 13923912
41N-Desmethyl Clarithromycin 11072636
42N-Desmethyl Clarithromycin 57369331
43N-Desmethyl Clarithromycin 129627090
44N-Desmethyl Clarithromycin 145714494
53Ranitidin-N-oxid 62985
54Ranitidin-N-oxid 3033888
55Ranitidin-S-oxid 62986
56Ranitidin-S-oxid 3033889
59Tramadol N-Oxide 9861699
60Tramadol N-Oxide 22016064
61Tramadol N-Oxide 25271934
62Tramadol N-Oxide 146157275
In [336]:
#merge tpsanliker with our pubchem-mined TPs
tpsanliker_rem2way_merged_tp_suspect_list <- full_join(rem2way_merged_tp_suspect_list,tpsanliker,by="successorcid")
dim(tpsanliker_rem2way_merged_tp_suspect_list) #100x15, compared to CAS - 115x15
#preview the joined table
tpsanliker_rem2way_merged_tp_suspect_list[70:76,c(1:8,15)]
  1. 100
  2. 15
A tibble: 7 × 9
gidsrcidcidpredecessorpredecessorcidtransformationsuccessorsuccessorcidsynonym
<dbl><dbl><dbl><chr><dbl><chr><chr><dbl><fct>
644340893089594Nicotine 89594Oxidation Cotinine 408NA
6443386730 9782Betamethasone 9782Acetylation Betamethasone-21-acetate 443967Betamethasone-21-acetate
6443387030 9782Betamethasone-21-acetate443967Ester cleavageBetamethasone 9782NA
NANA NANA NANA NA 98715582',2'-Difluoro-2'-deoxyuridine
NANA NANA NANA NA 657434-Acetamidoantipyrine
NANA NANA NANA NA 21514-Aminoantipyrine
NANA NANA NANA NA 726664-Formylaminoantipyrine

Rows with NA in the synonym column indicate TPs which were originally in the PubChem-mined list but were not in Anliker's Pharmaceutical Transformation Products list (n=52) e.g. Cotinine and Betamethasone.


Conversely, rows with NA in the first 7 columns were in Anliker's Pharmaceutical Transformation Products list (n=52) and not in the PubChem-mined list.

In [334]:
#check for duplicates amongst matches across both anliker and the PubChem-mined list (NA row duplicates don't count)
#tpsanliker_rem2way_merged_tp_suspect_list[duplicated(tpsanliker_rem2way_merged_tp_suspect_list[,c('predecessor','successor')])|
 #                                         duplicated(tpsanliker_rem2way_merged_tp_suspect_list[,c('predecessor','successor')],fromLast=TRUE),]
No duplicates, so can proceed. what sort of duplicates expected??
In [102]:
write.csv(tpsanliker_rem2way_merged_tp_suspect_list,"output/tpsanliker_rem2way_merged_tp_suspect_list.csv")

This joined table must now be manually curated i.e. successorcids which were not in the PubChem-mined list must be inspected manually because e.g. they may be CIDs of the same compound, but different stereoisomer. During manual curation, 4 new columns were added. This manually curated table is read-in below.

In [1]:
new_finaltps <- read.csv("input/tpsanliker_rem2way_merged_tp_suspect_list_man_cur.csv")
new_finaltps_to_suspect_screening <- new_finaltps[new_finaltps$to_suspect_screening==1,]
new_finaltps_to_suspect_screening$successor <- as.character(new_finaltps_to_suspect_screening$successor)
In [5]:
str(new_finaltps_to_suspect_screening)
'data.frame':	87 obs. of  20 variables:
 $ X                    : int  1 2 3 4 5 6 7 8 9 10 ...
 $ gid                  : int  64433917 64433893 64433895 64433897 64433880 64433837 64433840 64433845 64433847 64433849 ...
 $ srcid                : int  30 30 30 30 30 30 30 30 30 30 ...
 $ cid                  : int  135398737 1549000 1549000 1549000 2153 2159 2159 2160 2249 2249 ...
 $ predecessor          : Factor w/ 53 levels "Amisulpride",..: 14 11 11 11 8 1 2 3 4 4 ...
 $ predecessorcid       : int  135398737 1549000 1549000 1549000 2519 2159 71313372 2160 2249 2249 ...
 $ transformation       : Factor w/ 22 levels "Acetylation",..: 8 4 16 21 8 16 17 8 2 9 ...
 $ successor            : chr  "Norclozapine" "4-Chlorobenzophenone" "Cetirizine N-oxide" "1-[(4-Chlorophenyl)phenylmethyl]piperazine" ...
 $ successorcid         : int  135409468 8653 45038602 9340 2153 71313372 2159 4543 62936 14211540 ...
 $ evidencedoi          : Factor w/ 1 level "10.1007/s13361-017-1797-6": 1 1 1 1 1 1 1 1 1 1 ...
 $ evidenceref          : Factor w/ 1 level "Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropol"| __truncated__: 1 1 1 1 1 1 1 1 1 1 ...
 $ sourcecomment        : Factor w/ 1 level "Eawag": 1 1 1 1 1 1 1 1 1 1 ...
 $ sourcecommentfull    : Factor w/ 1 level "Eawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)": 1 1 1 1 1 1 1 1 1 1 ...
 $ datasetdoi           : Factor w/ 1 level "10.5281/zenodo.3754449": 1 1 1 1 1 1 1 1 1 1 ...
 $ datasetref           : Factor w/ 1 level "S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs fro"| __truncated__: 1 1 1 1 1 1 1 1 1 1 ...
 $ synonym              : Factor w/ 52 levels "1-[(4-Chlorophenyl)phenylmethyl]piperazine",..: NA 7 NA 1 NA 11 NA NA 12 13 ...
 $ equiv_to_successorcid: int  NA NA NA NA NA NA NA NA NA NA ...
 $ note1                : Factor w/ 5 levels "parent_in_CNS_TP_not_mapped",..: NA NA NA NA NA NA NA NA NA NA ...
 $ note2                : Factor w/ 16 levels "","4-(Trifluoromethyl)phenol; parent is fluoxetine ",..: NA NA NA NA NA NA NA NA NA NA ...
 $ to_suspect_screening : int  1 1 1 1 1 1 1 1 1 1 ...
In [8]:
sum(!is.na(new_finaltps_to_suspect_screening$synonym))
56
In [15]:
commontps <- new_finaltps_to_suspect_screening[!is.na(new_finaltps_to_suspect_screening$synonym) & !is.na(new_finaltps_to_suspect_screening$transformation),]
print(paste(length(unique(commontps$successor)),"unique TPs were common across PubChem-mined and Anliker's lists."))
[1] "36 unique TPs were common across PubChem-mined and Anliker's lists."
In [16]:
pc_mined_not_in_tpsanliker <- paste(new_finaltps_to_suspect_screening[is.na(new_finaltps_to_suspect_screening$synonym),"successor"], collapse=", ")
print(paste(sum(is.na(new_finaltps_to_suspect_screening$synonym)),"TPs were in the Pubchem-mined list which were not in tpsanliker:",pc_mined_not_in_tpsanliker,"."))
[1] "31 TPs were in the Pubchem-mined list which were not in tpsanliker: Norclozapine, Cetirizine N-oxide, Theophylline, Amisulpride, Nortriptyline, Nordiazepam, Norfentanyl, Tramadol, 7-Aminoflunitrazepam, Norfluoxetine, Gabapentin Related Compound E, Chlorothiazide, 4-Amino-6-chloro-1,3-benzenedisulfonamide, Norlidocaine, Lidocaine, 3-[(4-chlorobenzoyl)amino]propanoic acid, 2-Ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine, Mianserin, 8-Hydroxymirtazapine, Sulfadiazine, Morphine, Sulfamethoxazole, Ticlopidine, Venlafaxine, Cortisone, Prednisone, 2',2'-Difluorodeoxyuridine, Flucytosine, Nornicotine, Cotinine, Betamethasone ."

Actually, 30 if you consider naming issues with 2',2'-Difluorodeoxyuridine.

In [47]:
pc_mined_not_in_tpsanliker
'Norclozapine, Cetirizine N-oxide, Theophylline, Amisulpride, Nortriptyline, Nordiazepam, Norfentanyl, Tramadol, 7-Aminoflunitrazepam, Norfluoxetine, Gabapentin Related Compound E, Chlorothiazide, 4-Amino-6-chloro-1,3-benzenedisulfonamide, Norlidocaine, Lidocaine, 3-[(4-chlorobenzoyl)amino]propanoic acid, 2-Ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine, Mianserin, 8-Hydroxymirtazapine, Sulfadiazine, Morphine, Sulfamethoxazole, Ticlopidine, Venlafaxine, Cortisone, Prednisone, 2\',2\'-Difluorodeoxyuridine, Flucytosine, Nornicotine, Cotinine, Betamethasone'
In [62]:
parents_pc_mined_not_in_tpsanliker <- new_finaltps_to_suspect_screening[is.na(new_finaltps_to_suspect_screening$synonym),]
print(paste("These TPs not in tpsanliker came from",length(unique(parents_pc_mined_not_in_tpsanliker$predecessor)),"unique parents."))
[1] "These TPs not in tpsanliker came from 29 unique parents."
In [73]:
parents_pc_mined_not_in_tpsanliker$predecessor <- as.character(parents_pc_mined_not_in_tpsanliker$predecessor)
parents_pc_mined_not_in_tpsanliker$predecessor
#parents_pc_mined_not_in_tpsanliker[,order("predecessor")]
  1. 'Clozapine'
  2. 'Cetirizine'
  3. 'Caffeine'
  4. 'Amisulpride N-oxide'
  5. 'Amitriptyline'
  6. 'Diazepam'
  7. 'Fentanyl'
  8. 'Tramadol N-oxide'
  9. 'Flunitrazepam'
  10. 'Fluoxetine'
  11. 'Gabapentin'
  12. 'Hydrochlorothiazide'
  13. 'Hydrochlorothiazide'
  14. 'Lidocaine'
  15. 'Lidocaine-N-oxide'
  16. 'Bezafibrate'
  17. 'Methadone'
  18. 'Mianserin-N-oxide'
  19. 'Mirtazapine'
  20. 'N4-Acetylsulfadiazine'
  21. 'Codeine'
  22. 'N4-Acetylsulfamethoxazole'
  23. 'Clopidogrel carboxylic acid'
  24. 'Venlafaxine N-oxide'
  25. 'Hydrocortisone'
  26. 'Prednisolone'
  27. 'Gemcitabine'
  28. 'Emtricitabine'
  29. 'Nicotine'
  30. 'Nicotine'
  31. 'Betamethasone-21-acetate'

Actually, 28 if you consider naming issues as above.

In [67]:
parents_pc_mined_not_in_tpsanliker[duplicated(parents_pc_mined_not_in_tpsanliker$predecessor,fromLast=TRUE)|duplicated(parents_pc_mined_not_in_tpsanliker$predecessor),]
A data.frame: 4 × 20
Xgidsrcidcidpredecessorpredecessorcidtransformationsuccessorsuccessorcidevidencedoievidencerefsourcecommentsourcecommentfulldatasetdoidatasetrefsynonymequiv_to_successorcidnote1note2to_suspect_screening
<int><int><int><int><chr><int><fct><chr><int><fct><fct><fct><fct><fct><fct><fct><int><fct><fct><int>
31316443399730 3639Hydrochlorothiazide 3639HydrogenationChlorothiazide 272010.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.NANANANA1
32326443399930 3639Hydrochlorothiazide 3639Rearrangement4-Amino-6-chloro-1,3-benzenedisulfonamide6713610.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.NANANANA1
6969644340873089594Nicotine 89594DemethylationNornicotine 41210.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.NANANANA1
7070644340893089594Nicotine 89594Oxidation Cotinine 40810.1007/s13361-017-1797-6Schollee et al, Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products, J. Am. Soc. Mass Spectrom. 2017, 28, 12, 2692-2704.EawagEawag: Swiss Federal Institute for Aquatic Science and Technology (https://www.eawag.ch/en/)10.5281/zenodo.3754449S66 | S66 | EAWAGTPS | Parent-Transformation Product Pairs from Eawag | Parent-Transformation Product Pairs from Schollee et al 2017, Eawag.NANANANA1
In [92]:
#parents which have TP info in Transformations Section in PubChem
parents_noTPinfo <- data.frame(TP_info_avail_PubChem=c("yes", "no"),
                no_parents=c(28,816-28))
ggplot(data=parents_noTPinfo, aes(x=TP_info_avail_PubChem, y=no_parents)) +
  geom_bar(stat="identity") + labs(title = "How Many CNS Parents \n had TP Info in PubChem Transformations? \n (as of 10/2020)", x="", y="No. CNS Parents") +
  theme(plot.title = element_text(size=20,hjust=0.5)) + theme(text = element_text(size=16)) +
    theme(text = element_text(size=18))
In [17]:
tpsanliker_not_in_pc_mined <- paste(new_finaltps_to_suspect_screening[is.na(new_finaltps_to_suspect_screening$transformation),"synonym"], collapse=", ")
print(paste(sum(is.na(new_finaltps_to_suspect_screening$transformation)),"TPs were in the tpsanliker list which were not in Pubchem-mined:",tpsanliker_not_in_pc_mined,"."))
[1] "15 TPs were in the tpsanliker list which were not in Pubchem-mined: 4-Acetamidoantipyrine, 4-Aminoantipyrine, 4-Formylaminoantipyrine, 4-Trifluoromethylphenol, Clofibric acid, Clopidogrel Carboxylic Acid, Dioxoaminopyrine, N4-Acetylsulfadimethoxine, N4-Acetylsulfamethazine, N4-Acetylsulfathiazole, N-Desmethyl Clarithromycin, N-desmethylpheniramine, Pheniramine-N-oxide, Prednisolon, Ritalinic acid ."
In [18]:
new_finaltps$note1 <- as.character(new_finaltps$note1)
unique(new_finaltps$note1)
print(paste(nrow(new_finaltps[!is.na(new_finaltps$note1) & new_finaltps$note1=="redundant",])," TP compound CIDs were redundant because they were simply different stereochemical forms of the same compound."))
print(paste(nrow(new_finaltps[!is.na(new_finaltps$note1) & new_finaltps$note1=="parent_not_in_CNS",]) + nrow(new_finaltps[!is.na(new_finaltps$note1) & new_finaltps$note1=="parent_not_in_CNS_same_class",])," TP compounds have parent compounds (drugs) which are not in the CNS list (n=816)."))
print(paste(nrow(new_finaltps[!is.na(new_finaltps$note1) & new_finaltps$note1=="parent_in_CNS_TP_not_mapped",]), "TP compounds have parent compounds (drugs) which are in the CNS list (n=816), but their Parents-TP relationships are not mapped in PubChem."))
print(paste(nrow(new_finaltps[!is.na(new_finaltps$note1) & new_finaltps$note1=="wrongly_mapped_in_Pubchem",])," TP compound has a Parent-TP relationship which is 'wrongly' or 'incompletely' mapped in PubChem."))
  1. NA
  2. 'redundant'
  3. 'parent_not_in_CNS'
  4. 'parent_in_CNS_TP_not_mapped'
  5. 'parent_not_in_CNS_same_class'
  6. 'wrongly_mapped_in_Pubchem'
[1] "13  TP compound CIDs were redundant because they were simply different stereochemical forms of the same compound."
[1] "10  TP compounds have parent compounds (drugs) which are not in the CNS list (n=816)."
[1] "4 TP compounds have parent compounds (drugs) which are in the CNS list (n=816), but their Parents-TP relationships are not mapped in PubChem."
[1] "1  TP compound has a Parent-TP relationship which is 'wrongly' or 'incompletely' mapped in PubChem."
In [22]:
new_finaltps[!is.na(new_finaltps$note1) & new_finaltps$note1=="parent_not_in_CNS","successor"]
new_finaltps[!is.na(new_finaltps$note1) & new_finaltps$note1=="parent_not_in_CNS_same_class","successor"]
  1. 4-Acetamidoantipyrine
  2. 4-Aminoantipyrine
  3. 4-Formylaminoantipyrine
  4. Clofibric acid
  5. Dioxoaminopyrine
  6. N4-Acetylsulfadimethoxine
  7. N4-Acetylsulfamethazine
  8. N4-Acetylsulfathiazole
Levels:
  1. '1-[(4-Chlorophenyl)phenylmethyl]piperazine'
  2. '2\',2\'-Difluorodeoxyuridine'
  3. '2\',3\'-di-O-acetyl-5\'-deoxy-5-fluorocytidine'
  4. '2-Ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine'
  5. '3-[(4-chlorobenzoyl)amino]propanoic acid'
  6. '4\'-Hydroxydiclofenac'
  7. '4-Acetamidoantipyrine'
  8. '4-Amino-6-chloro-1,3-benzenedisulfonamide'
  9. '4-Aminoantipyrine'
  10. '4-Chlorobenzophenone'
  11. '4-Formylaminoantipyrine'
  12. '4-Trifluoromethylphenol'
  13. '5-Hydroxydiclofenac'
  14. '7-Aminoflunitrazepam'
  15. '8-Hydroxymirtazapine'
  16. 'Amisulpride'
  17. 'Amisulpride N-oxide'
  18. 'Atenolol acid'
  19. 'Atenolol-desisopropyl'
  20. 'Betamethasone'
  21. 'Betamethasone-21-acetate'
  22. 'Carbamazepine-10,11-dihydro-10,11-dihydroxy'
  23. 'Carbamazepine-10,11-epoxide'
  24. 'Cetirizine N-oxide'
  25. 'Chlorothiazide'
  26. 'Clarithromycin N-oxide'
  27. 'Clofibric acid'
  28. 'Clopidogrel Carboxylic Acid'
  29. 'Cortisone'
  30. 'Cotinine'
  31. 'D617'
  32. 'Dexamethason-21-acetate'
  33. 'Dioxoaminopyrine'
  34. 'Fenofibric acid'
  35. 'Flucytosine'
  36. 'Gabapentin Related Compound E'
  37. 'Guanylurea'
  38. 'Iminostilbene'
  39. 'Lidocaine'
  40. 'Lidocaine-N-oxide'
  41. 'Mianserin'
  42. 'Mianserin-N-oxide'
  43. 'Morphine'
  44. 'N,N-Didesvenlafaxine'
  45. 'N,O-Didesvenlafaxine'
  46. 'N-Bisdesmethyltramadol'
  47. 'N-Desmethyl Clarithromycin'
  48. 'N-Desmethyltramadol'
  49. 'N-Desvenlafaxine'
  50. 'N-desmethylpheniramine'
  51. 'N4-Acetylsulfadiazine'
  52. 'N4-Acetylsulfadimethoxine'
  53. 'N4-Acetylsulfamethazine'
  54. 'N4-Acetylsulfamethoxazole'
  55. 'N4-Acetylsulfathiazole'
  56. 'Norclozapine'
  57. 'Nordeprenyl'
  58. 'Nordiazepam'
  59. 'Norfentanyl'
  60. 'Norfluoxetine'
  61. 'Norlidocaine'
  62. 'Normianserin'
  63. 'Nornicotine'
  64. 'Nortriptyline'
  65. 'O-Desvenlafaxine'
  66. 'Oseltamivir acid'
  67. 'Pheniramine-N-oxide'
  68. 'Prednisolon'
  69. 'Prednisone'
  70. 'R-Deprenyl N-oxide'
  71. 'Ranitidine-N-oxide'
  72. 'Ranitidine-S-oxide'
  73. 'Ritalinic acid'
  74. 'Sulfadiazine'
  75. 'Sulfamethoxazole'
  76. 'Theophylline'
  77. 'Ticlopidine'
  78. 'Tramadol'
  79. 'Tramadol N-oxide'
  80. 'Valsartan acid'
  81. 'Venlafaxine'
  82. 'Venlafaxine N-oxide'
  1. N-desmethylpheniramine
  2. Pheniramine-N-oxide
Levels:
  1. '1-[(4-Chlorophenyl)phenylmethyl]piperazine'
  2. '2\',2\'-Difluorodeoxyuridine'
  3. '2\',3\'-di-O-acetyl-5\'-deoxy-5-fluorocytidine'
  4. '2-Ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine'
  5. '3-[(4-chlorobenzoyl)amino]propanoic acid'
  6. '4\'-Hydroxydiclofenac'
  7. '4-Acetamidoantipyrine'
  8. '4-Amino-6-chloro-1,3-benzenedisulfonamide'
  9. '4-Aminoantipyrine'
  10. '4-Chlorobenzophenone'
  11. '4-Formylaminoantipyrine'
  12. '4-Trifluoromethylphenol'
  13. '5-Hydroxydiclofenac'
  14. '7-Aminoflunitrazepam'
  15. '8-Hydroxymirtazapine'
  16. 'Amisulpride'
  17. 'Amisulpride N-oxide'
  18. 'Atenolol acid'
  19. 'Atenolol-desisopropyl'
  20. 'Betamethasone'
  21. 'Betamethasone-21-acetate'
  22. 'Carbamazepine-10,11-dihydro-10,11-dihydroxy'
  23. 'Carbamazepine-10,11-epoxide'
  24. 'Cetirizine N-oxide'
  25. 'Chlorothiazide'
  26. 'Clarithromycin N-oxide'
  27. 'Clofibric acid'
  28. 'Clopidogrel Carboxylic Acid'
  29. 'Cortisone'
  30. 'Cotinine'
  31. 'D617'
  32. 'Dexamethason-21-acetate'
  33. 'Dioxoaminopyrine'
  34. 'Fenofibric acid'
  35. 'Flucytosine'
  36. 'Gabapentin Related Compound E'
  37. 'Guanylurea'
  38. 'Iminostilbene'
  39. 'Lidocaine'
  40. 'Lidocaine-N-oxide'
  41. 'Mianserin'
  42. 'Mianserin-N-oxide'
  43. 'Morphine'
  44. 'N,N-Didesvenlafaxine'
  45. 'N,O-Didesvenlafaxine'
  46. 'N-Bisdesmethyltramadol'
  47. 'N-Desmethyl Clarithromycin'
  48. 'N-Desmethyltramadol'
  49. 'N-Desvenlafaxine'
  50. 'N-desmethylpheniramine'
  51. 'N4-Acetylsulfadiazine'
  52. 'N4-Acetylsulfadimethoxine'
  53. 'N4-Acetylsulfamethazine'
  54. 'N4-Acetylsulfamethoxazole'
  55. 'N4-Acetylsulfathiazole'
  56. 'Norclozapine'
  57. 'Nordeprenyl'
  58. 'Nordiazepam'
  59. 'Norfentanyl'
  60. 'Norfluoxetine'
  61. 'Norlidocaine'
  62. 'Normianserin'
  63. 'Nornicotine'
  64. 'Nortriptyline'
  65. 'O-Desvenlafaxine'
  66. 'Oseltamivir acid'
  67. 'Pheniramine-N-oxide'
  68. 'Prednisolon'
  69. 'Prednisone'
  70. 'R-Deprenyl N-oxide'
  71. 'Ranitidine-N-oxide'
  72. 'Ranitidine-S-oxide'
  73. 'Ritalinic acid'
  74. 'Sulfadiazine'
  75. 'Sulfamethoxazole'
  76. 'Theophylline'
  77. 'Ticlopidine'
  78. 'Tramadol'
  79. 'Tramadol N-oxide'
  80. 'Valsartan acid'
  81. 'Venlafaxine'
  82. 'Venlafaxine N-oxide'
In [24]:
new_finaltps[!is.na(new_finaltps$note1) & new_finaltps$note1=="parent_in_CNS_TP_not_mapped","synonym"]
  1. 4-Trifluoromethylphenol
  2. Clopidogrel Carboxylic Acid
  3. N-Desmethyl Clarithromycin
  4. Ritalinic acid
Levels:
  1. '1-[(4-Chlorophenyl)phenylmethyl]piperazine'
  2. '2\',2\'-Difluoro-2\'-deoxyuridine'
  3. '2\',3\'-di-O-acetyl-5\'-deoxy-5-fluorocytidine'
  4. '4\'-Hydroxy Diclofenac'
  5. '4-Acetamidoantipyrine'
  6. '4-Aminoantipyrine'
  7. '4-Chlorobenzophenone'
  8. '4-Formylaminoantipyrine'
  9. '4-Trifluoromethylphenol'
  10. '5-Hydroxy Diclofenac'
  11. 'Amisulpride N-Oxide'
  12. 'Atenolol acid (Metoprolol acid)'
  13. 'Atenolol-desisopropyl'
  14. 'Betamethasone-21-acetate'
  15. 'Carbamazepine epoxide'
  16. 'Carbamazepine-10,11-dihydro-10,11-dihydroxy'
  17. 'Clarithromycin N-Oxide'
  18. 'Clofibric acid'
  19. 'Clopidogrel Carboxylic Acid'
  20. 'D617'
  21. 'Desvenlafaxine'
  22. 'Dexamethasone-21-acetate'
  23. 'Dioxoaminopyrine'
  24. 'Fenofibric acid'
  25. 'Guanylurea'
  26. 'Iminostilbene'
  27. 'Lidocaine-N-Oxide'
  28. 'Mianserin-N-Oxide'
  29. 'N,N-Didesmethylvenlafaxine'
  30. 'N,O-Didesmethylvenlafaxine'
  31. 'N-Bisdesmethyl Tramadol'
  32. 'N-Desmethyl Clarithromycin'
  33. 'N-Desmethyltramadol'
  34. 'N-Desmethylvenlafaxine'
  35. 'N-desmethylpheniramine'
  36. 'N4-Acetylsulfadiazine'
  37. 'N4-Acetylsulfadimethoxine'
  38. 'N4-Acetylsulfamethazine'
  39. 'N4-Acetylsulfamethoxazole'
  40. 'N4-Acetylsulfathiazole'
  41. 'Nordeprenyl'
  42. 'Normianserin'
  43. 'Oseltamivir carboxylate'
  44. 'Pheniramine-N-oxide'
  45. 'Prednisolon'
  46. 'R-Deprenyl N-Oxide'
  47. 'Ranitidin-N-oxid'
  48. 'Ranitidin-S-oxid'
  49. 'Ritalinic acid'
  50. 'Tramadol N-Oxide'
  51. 'Valsartan acid'
  52. 'Venlafaxine N-Oxide'
In [25]:
new_finaltps[!is.na(new_finaltps$note1) & new_finaltps$note1=="wrongly_mapped_in_Pubchem","synonym"]
Prednisolon
Levels:
  1. '1-[(4-Chlorophenyl)phenylmethyl]piperazine'
  2. '2\',2\'-Difluoro-2\'-deoxyuridine'
  3. '2\',3\'-di-O-acetyl-5\'-deoxy-5-fluorocytidine'
  4. '4\'-Hydroxy Diclofenac'
  5. '4-Acetamidoantipyrine'
  6. '4-Aminoantipyrine'
  7. '4-Chlorobenzophenone'
  8. '4-Formylaminoantipyrine'
  9. '4-Trifluoromethylphenol'
  10. '5-Hydroxy Diclofenac'
  11. 'Amisulpride N-Oxide'
  12. 'Atenolol acid (Metoprolol acid)'
  13. 'Atenolol-desisopropyl'
  14. 'Betamethasone-21-acetate'
  15. 'Carbamazepine epoxide'
  16. 'Carbamazepine-10,11-dihydro-10,11-dihydroxy'
  17. 'Clarithromycin N-Oxide'
  18. 'Clofibric acid'
  19. 'Clopidogrel Carboxylic Acid'
  20. 'D617'
  21. 'Desvenlafaxine'
  22. 'Dexamethasone-21-acetate'
  23. 'Dioxoaminopyrine'
  24. 'Fenofibric acid'
  25. 'Guanylurea'
  26. 'Iminostilbene'
  27. 'Lidocaine-N-Oxide'
  28. 'Mianserin-N-Oxide'
  29. 'N,N-Didesmethylvenlafaxine'
  30. 'N,O-Didesmethylvenlafaxine'
  31. 'N-Bisdesmethyl Tramadol'
  32. 'N-Desmethyl Clarithromycin'
  33. 'N-Desmethyltramadol'
  34. 'N-Desmethylvenlafaxine'
  35. 'N-desmethylpheniramine'
  36. 'N4-Acetylsulfadiazine'
  37. 'N4-Acetylsulfadimethoxine'
  38. 'N4-Acetylsulfamethazine'
  39. 'N4-Acetylsulfamethoxazole'
  40. 'N4-Acetylsulfathiazole'
  41. 'Nordeprenyl'
  42. 'Normianserin'
  43. 'Oseltamivir carboxylate'
  44. 'Pheniramine-N-oxide'
  45. 'Prednisolon'
  46. 'R-Deprenyl N-Oxide'
  47. 'Ranitidin-N-oxid'
  48. 'Ranitidin-S-oxid'
  49. 'Ritalinic acid'
  50. 'Tramadol N-Oxide'
  51. 'Valsartan acid'
  52. 'Venlafaxine N-Oxide'
In [521]:
tail(new_finaltps_to_suspect_screening[,c(1:8,16:20)])
A data.frame: 6 × 13
Xgidsrcidcidpredecessorpredecessorcidtransformationsuccessorsynonymequiv_to_successorcidnote1note2to_suspect_screening
<int><int><int><int><fct><int><fct><chr><fct><int><fct><fct><int>
8686NANANANANANAN4-Acetylsulfathiazole N4-Acetylsulfathiazole 0parent_not_in_CNS N4-Acetylsulfathiazole; parent is sulfathiazole 1
8787NANANANANANAN-Desmethyl ClarithromycinN-Desmethyl Clarithromycin0parent_in_CNS_TP_not_mapped 1
9292NANANANANANAN-desmethylpheniramine N-desmethylpheniramine 0parent_not_in_CNS_same_classsame compound class (CNS has chlorpheniramine, anliker has pheniramine as parents)1
9393NANANANANANAPheniramine-N-oxide Pheniramine-N-oxide 0parent_not_in_CNS_same_classsame compound class (CNS has chlorpheniramine, anliker has pheniramine as parents)1
9494NANANANANANAPrednisolon Prednisolon 0wrongly_mapped_in_Pubchem Prednisolone 1
9797NANANANANANARitalinic acid Ritalinic acid 0parent_in_CNS_TP_not_mapped Ritalinic acid; parent is methylphenidate 1
In [522]:
length(new_finaltps_to_suspect_screening$successor)
length(new_finaltps_to_suspect_screening$successorcid)
87
87
In [523]:
length(unique(new_finaltps_to_suspect_screening$successorcid))
length(unique(new_finaltps_to_suspect_screening$successor))
82
82

For final suspect list generation, we only need unique TP compounds, regardless of who their parent(s) are. Therefore, need to remove TPS which have more than one parent and therefore have multiple rows associated with them as they are redundant. E.g.:

In [524]:
new_finaltps_more_than_one_parent <- new_finaltps_to_suspect_screening[duplicated(new_finaltps_to_suspect_screening$successorcid)|duplicated(new_finaltps_to_suspect_screening$successorcid,fromLast=TRUE),c(1:9,16:20),]
new_finaltps_more_than_one_parent[order(new_finaltps_more_than_one_parent$successor),]
A data.frame: 9 × 14
Xgidsrcidcidpredecessorpredecessorcidtransformationsuccessorsuccessorcidsynonymequiv_to_successorcidnote1note2to_suspect_screening
<int><int><int><int><fct><int><fct><chr><int><fct><int><fct><fct><int>
4 464433897301549000Cetirizine1549000Tertiary amine cleavage1-[(4-Chlorophenyl)phenylmethyl]piperazine 93401-[(4-Chlorophenyl)phenylmethyl]piperazineNANANA1
40406443403530 4034Meclozine 4034Tertiary amine cleavage1-[(4-Chlorophenyl)phenylmethyl]piperazine 93401-[(4-Chlorophenyl)phenylmethyl]piperazineNANANA1
2 264433893301549000Cetirizine1549000Cleavage 4-Chlorobenzophenone 86534-Chlorobenzophenone NANANA1
39396443403330 4034Meclozine 4034Cleavage 4-Chlorobenzophenone 86534-Chlorobenzophenone NANANA1
9 96443384730 2249Atenolol 2249Amide hydrolysis Atenolol acid 62936Atenolol acid (Metoprolol acid) NANANA1
43436443405330 4171Metoprolol 4171Oxidation Atenolol acid 62936Atenolol acid (Metoprolol acid) NANANA1
36366443400730 3749Irbesartan 3749Multiple Valsartan acid 19388302Valsartan acid NANANA1
38386443403130 3961Losartan 3961Multiple Valsartan acid 19388302Valsartan acid NANANA1
64646443418730 60846Valsartan 60846Multiple Valsartan acid 19388302Valsartan acid NANANA1

To generate a Suspect List for input into Shinyscreen, we need to obtain SMILES for our unique TPs. succesorcid was submitted as input to PubChem's Identifier Exchange Service https://pubchem.ncbi.nlm.nih.gov/idexchange/idexchange.cgi with the following settings:

  • Input ID List: CIDs (successorcid)
  • Operator Type: Same CID
  • Output IDs: SMILES
  • Output Method: Two column file showing each input-output correspondence.

The output is read in below.

In [444]:
#write out for idexchange, not including rows which are the same TP but have multiple parents
write.table(unique(new_finaltps_to_suspect_screening$successorcid),"pharma_CNS/anliker2020/tpsanliker_rem2way_merged_suspect_list_man_cur_cids_to_SMILES", row.names=FALSE, col.names=FALSE)
#submit this to ID exchange to get SMILES
In [459]:
#read in ID Exchange output giving SMILES for CIDs
id_exchange_output_unique_tpsanliker_rem2way_merged <- read.table('pharma_CNS/anliker2020/1715112478001380621_cid_SMILES_82.txt',comment.char = "")
colnames(id_exchange_output_unique_tpsanliker_rem2way_merged) <- c("successorcid","SMILES")
id_exchange_output_unique_tpsanliker_rem2way_merged$SMILES <- as.character(id_exchange_output_unique_tpsanliker_rem2way_merged$SMILES)
str(id_exchange_output_unique_tpsanliker_rem2way_merged)
'data.frame':	82 obs. of  2 variables:
 $ successorcid: int  135409468 8653 45038602 9340 2153 71313372 2159 4543 62936 14211540 ...
 $ SMILES      : chr  "C1CN(CCN1)C2=NC3=C(C=CC(=C3)Cl)NC4=CC=CC=C42" "C1=CC=C(C=C1)C(=O)C2=CC=C(C=C2)Cl" "C1C[N+](CCN1C(C2=CC=CC=C2)C3=CC=C(C=C3)Cl)(CCOCC(=O)O)[O-]" "C1CN(CCN1)C(C2=CC=CC=C2)C3=CC=C(C=C3)Cl" ...
In [525]:
#add compound names to cid-SMILES columns
withSMILES_id_exchange_output_unique_tpsanliker_rem2way_merged <- left_join(id_exchange_output_unique_tpsanliker_rem2way_merged,new_finaltps) #adds back more-than-one-parent rows
#remove extraneous columns
suspect_list <- withSMILES_id_exchange_output_unique_tpsanliker_rem2way_merged[,c("successorcid","successor","SMILES")]
Joining, by = "successorcid"

In [526]:
str(suspect_list)
tail(suspect_list)
'data.frame':	87 obs. of  3 variables:
 $ successorcid: int  135409468 8653 8653 45038602 9340 9340 2153 71313372 2159 4543 ...
 $ successor   : Factor w/ 82 levels "1-[(4-Chlorophenyl)phenylmethyl]piperazine",..: 56 10 10 24 1 1 76 17 16 64 ...
 $ SMILES      : chr  "C1CN(CCN1)C2=NC3=C(C=CC(=C3)Cl)NC4=CC=CC=C42" "C1=CC=C(C=C1)C(=O)C2=CC=C(C=C2)Cl" "C1=CC=C(C=C1)C(=O)C2=CC=C(C=C2)Cl" "C1C[N+](CCN1C(C2=CC=CC=C2)C3=CC=C(C=C3)Cl)(CCOCC(=O)O)[O-]" ...
A data.frame: 6 × 3
successorcidsuccessorSMILES
<int><fct><chr>
82 67183N4-Acetylsulfathiazole CC(=O)NC1=CC=C(C=C1)S(=O)(=O)NC2=NC=CS2
8313923912N-Desmethyl ClarithromycinCCC1C(C(C(C(=O)C(CC(C(C(C(C(C(=O)O1)C)OC2CC(C(C(O2)C)O)(C)OC)C)OC3C(C(CC(O3)C)NC)O)(C)OC)C)C)O)(C)O
84 161283N-desmethylpheniramine CNCCC(C1=CC=CC=C1)C2=CC=CC=N2
85 222605Pheniramine-N-oxide C[N+](C)(CCC(C1=CC=CC=C1)C2=CC=CC=N2)[O-]
86 5755Prednisolon C[C@]12C[C@@H]([C@H]3[C@H]([C@@H]1CC[C@@]2(C(=O)CO)O)CCC4=CC(=O)C=C[C@]34C)O
87 86863Ritalinic acid C1CCNC(C1)C(C2=CC=CC=C2)C(=O)O
In [527]:
suspect_list[duplicated(suspect_list$successor)|duplicated(suspect_list$successor,fromLast=TRUE),] #new_finaltps_more_than_one_parent
A data.frame: 9 × 3
successorcidsuccessorSMILES
<int><fct><chr>
2 86534-Chlorobenzophenone C1=CC=C(C=C1)C(=O)C2=CC=C(C=C2)Cl
3 86534-Chlorobenzophenone C1=CC=C(C=C1)C(=O)C2=CC=C(C=C2)Cl
5 93401-[(4-Chlorophenyl)phenylmethyl]piperazineC1CN(CCN1)C(C2=CC=CC=C2)C3=CC=C(C=C3)Cl
6 93401-[(4-Chlorophenyl)phenylmethyl]piperazineC1CN(CCN1)C(C2=CC=CC=C2)C3=CC=C(C=C3)Cl
11 62936Atenolol acid CC(C)NCC(COC1=CC=C(C=C1)CC(=O)O)O
12 62936Atenolol acid CC(C)NCC(COC1=CC=C(C=C1)CC(=O)O)O
3919388302Valsartan acid C1=CC=C(C(=C1)C2=CC=C(C=C2)C(=O)O)C3=NNN=N3
4019388302Valsartan acid C1=CC=C(C(=C1)C2=CC=C(C=C2)C(=O)O)C3=NNN=N3
4119388302Valsartan acid C1=CC=C(C(=C1)C2=CC=C(C=C2)C(=O)O)C3=NNN=N3
In [529]:
suspect_list_out <- unique(suspect_list)
In [530]:
dim(suspect_list_out)
  1. 82
  2. 3
In [457]:
#write final TP suspect list containing anliker TPs + PubChem TPs
write.table(suspect_list_out, "output/20201002_cns_anliker_82_tps.csv", row.names=FALSE, quote=FALSE, sep="\t")

DONE!!!

In [ ]:

In [ ]: