jjackson-eco/mammal_weather_lifehistory-v0.1.zip
jjackson-eco-mammal_weather_lifehistory-7fb1e06
.gitignore
169 Bytes
README.md
17.7 kB
annual_abundance_changes
README.md
23.8 kB
annual_abundance_options.R
8.2 kB
annual_population_growth_rate.R
7.8 kB
density_dependence_simulation.R
3.2 kB
detrend_population_growth_rate.R
6.0 kB
testing_detrending.R
4.5 kB
timeseries_gap_exploration.R
9.7 kB
timeseries_models_test.R
4.9 kB
chelsa_exploration.R
5.5 kB
data
.DS_Store
6.1 kB
chelsa_stl.RDS
75.2 MB
lifehistory.RData
145.8 kB
mam_chelsa.RDS
8.9 MB
mam_chelsa_annual.RDS
10.5 MB
mam_chelsa_cloud
mam_chelsa1979.RDS
1.8 MB
mam_chelsa1986.RDS
1.8 MB
mam_chelsa1993.RDS
1.8 MB
mam_chelsa2000.RDS
1.8 MB
mam_chelsa2007.RDS
1.8 MB
mammal_analysis_data_GAM.RData
55.6 kB
pgr_weather
mnanom_5km.RData
52.0 kB
mnanom_5km_GAM.RData
45.0 kB
mnanom_5km_naive.RData
45.0 kB
pgr_weather_res.RDS
308.6 kB
var_5km_GAM.RData
45.0 kB
lifehistory_exploration.R
9.7 kB
mam_exploration.R
6.1 kB
mammal_weather_lifehistory.Rproj
205 Bytes
meta_regression
GAM_coefficients
.DS_Store
6.1 kB
phylo_precip_GAM.R
7.0 kB
phylo_precip_GAM_absolute_lognormal.R
13.1 kB
phylo_spatial_univar.R
10.5 kB
phylo_temp_GAM.R
6.9 kB
phylo_temp_GAM_absolute.R
8.4 kB
phylo_temp_GAM_absolute_lognormal.R
14.2 kB
phylo_weathervar_GAM.R
10.1 kB
spatial_temp_GAM.R
5.7 kB
Linear_coefficients
investigating_longevity_effect.R
7.4 kB
phylo_linear_trend.R
6.7 kB
phylo_precip.R
14.4 kB
phylo_temp.R
18.5 kB
README.md
24.3 kB
Testing_spatial_autocorrelation.R
6.4 kB
UCloud_regression_scripts_jan2021
phylo_regression_precip_UCloud.R
12.8 kB
phylo_regression_temp_UCloud.R
12.4 kB
generating_coefficient_data_GAM.R
4.2 kB
posterior_life_history_plots_Gamma_GAM.R
17.6 kB
posterior_life_history_plots_lognormal_GAM.R
13.8 kB
testing_and_prior_predictive_simulation
Myotis_emarginatus_investigation.R
3.2 kB
non_linear_tests.R
8.3 kB
phylo_meta_regression_test.R
4.2 kB
prior_predictive_simulation.R
7.2 kB
simple_phylogenetic_regression.R
9.0 kB
phylo_exploration.R
1.2 kB
plots
annual_abundance
Accounting_for_autocorrelation_testing
DD_coefficient_simulation.jpeg
496.3 kB
Environment_coefficient_simulation.jpeg
450.4 kB
annual_abundance_options
option1_center_resid_ab.jpeg
532.7 kB
option2_resid_ab_popchange.jpeg
528.5 kB
option3_ln_ab.jpeg
276.9 kB
option4_timeseries.jpeg
339.8 kB
pop_growth_rate_correlations.jpeg
849.8 kB
wtd_raw.jpeg
296.8 kB
annual_population_growth_rates
.DS_Store
6.1 kB
density_dependence_mam.jpeg
524.3 kB
pop_growth_rate_histogram.jpeg
199.6 kB
population_growth_rate_distribution.jpeg
486.7 kB
raw0_abundance.jpeg
2.8 MB
raw0_proportion.jpeg
482.1 kB
unusual_abundance_changes.jpeg
2.1 MB
data_summary.jpeg
150.1 kB
linear_trend_and_detrending
.DS_Store
6.1 kB
abundance_histograms.jpeg
3.3 MB
density_dependence_lpd.jpeg
396.0 kB
detrending_linear.jpeg
289.8 kB
detrending_test.jpeg
441.4 kB
linear_abundance_coefficients.jpeg
1.2 MB
record_length.jpeg
284.8 kB
timeseries_gaps
.DS_Store
6.1 kB
Consecutive_blocks.jpeg
233.7 kB
Consecutive_blocks_highproportion.jpeg
208.2 kB
Proportion_1year_transitions.jpeg
254.8 kB
fossa_timeseries.jpeg
75.8 kB
record_timelines
.DS_Store
6.1 kB
10_consecutive_block_timeline.jpeg
557.2 kB
1_consecutive_block_timeline.jpeg
1.9 MB
2_consecutive_block_timeline.jpeg
1.2 MB
3_consecutive_block_timeline.jpeg
975.4 kB
4_consecutive_block_timeline.jpeg
657.9 kB
5_consecutive_block_timeline.jpeg
824.5 kB
6_consecutive_block_timeline.jpeg
863.6 kB
7_consecutive_block_timeline.jpeg
541.6 kB
8_consecutive_block_timeline.jpeg
852.0 kB
9_consecutive_block_timeline.jpeg
513.1 kB
timeseries_model_testing
AIC_AR.jpeg
445.2 kB
temporal_autocorrelation.jpeg
1.9 MB
chelsa_raw
.DS_Store
6.1 kB
precip_aug93.jpeg
2.1 MB
precip_mam.jpeg
5.5 MB
temp_aug93.jpeg
2.7 MB
temp_mam.jpeg
5.3 MB
developing_annual_weather_variables
ID28_anomaly_sd.jpeg
349.5 kB
buffer_example_sdu.jpeg
383.2 kB
precip_50mbuffer_NAissue.jpeg
251.0 kB
precip_annual_weather_correlations.jpeg
2.9 MB
precip_anomaly_season_scales.jpeg
1.2 MB
precip_stl_sample.jpeg
1.4 MB
temp_annual_weather_correlations.jpeg
3.0 MB
temp_anomaly_season_scales.jpeg
1.1 MB
temp_scale_cheetah_example.jpeg
333.0 kB
temp_stl_sample.jpeg
1.4 MB
weather_buffer.jpeg
473.6 kB
weather_decomposition_example_cheetah.jpeg
490.9 kB
lifehistory_raw
IUCN_lonlit.jpeg
1.6 MB
adult_bodymass_distribution.jpeg
715.5 kB
bodymass_lonlit.jpeg
1.6 MB
max_longevity_litter.jpeg
796.3 kB
max_longevity_litter_order.jpeg
1.3 MB
mam_LPD_tree.jpeg
3.7 MB
mam_raw
.DS_Store
6.1 kB
mam_ln_abundance.jpeg
1.2 MB
mam_locations.jpeg
2.9 MB
mam_lpd_numbers.jpeg
113.3 kB
mam_scaled_abundance.jpeg
1.1 MB
mam_sp.jpeg
1.0 MB
mam_years.jpeg
681.3 kB
manuscript_figures
equations_lpd.Rmd
2.1 kB
figure1.jpeg
14.3 MB
figure1_full.jpg
15.0 MB
figure1_inset.jpeg
1.4 MB
figure2.jpeg
1.3 MB
figureS1.jpeg
801.8 kB
manuscript_figures_jan2021.R
24.0 kB
phylo_weather_effects.jpeg
13.7 MB
meta_regression
absolute_weather_effect_lh.jpeg
505.2 kB
distance_matrices_temp.jpeg
6.1 MB
meta_regression_full
biome_effects.jpeg
251.9 kB
biome_effects_halfeye.jpeg
677.7 kB
longevity_effect_exploration_bins.jpeg
605.7 kB
longevity_effect_plot.jpeg
610.5 kB
longevity_effect_precip.jpeg
792.1 kB
longevity_effect_temp.jpeg
1.2 MB
model_effects.jpeg
158.5 kB
posterior_lifehistory_Gamma.jpeg
1.4 MB
posterior_lifehistory_binned_Gamma.jpeg
1.1 MB
posterior_lifehistory_binned_lognormal.jpeg
1.1 MB
posterior_lifehistory_lognormal.jpeg
1.4 MB
precip_effects_all.jpeg
550.2 kB
temp_effects_all.jpeg
1.2 MB
temp_longevity_biome.jpeg
1.1 MB
model_lookup_table.png
65.6 kB
precip_biome_mod_parms.jpeg
458.1 kB
precipitation_gaussian_model_comparison.png
25.6 kB
prior_predictive_simulation
coefficient_differences_beta.jpeg
265.6 kB
life_history_effect_pps.jpeg
957.3 kB
random_effect_variance_pps.jpeg
203.9 kB
weather_coefficient_pps.jpeg
319.7 kB
repeated_obs_spatial
Myotis_emarginatus.jpeg
263.9 kB
biome_effects.jpeg
818.0 kB
pareto_k_temp.jpeg
292.4 kB
temp_base_posterior.jpeg
677.1 kB
sample_size_posterior_prediction.jpeg
573.6 kB
spatial_autocorrelation_localtemp.jpeg
461.9 kB
spatial_autocorrelation_localvalues_temp.jpeg
761.2 kB
spatial_autocorrelation_model_comparison.png
56.9 kB
spatial_autocorrelation_posterior.jpeg
339.1 kB
spatial_autocorrelation_temp.jpeg
786.8 kB
temp_biome_mod_parms.jpeg
458.1 kB
temperature_gaussian_model_comparison.png
25.1 kB
weathervar_posterior.jpeg
565.6 kB
weather_pop_growth
absolute_weather_life_history_ALL.jpeg
748.1 kB
abundance_trend_cormat.jpeg
210.6 kB
biome_anomal_pgr.jpeg
3.0 MB
coef_biome_mnanom_5km.jpeg
1.5 MB
coef_biome_mnanom_5km_GAM.jpeg
1.1 MB
coef_lat_mnanom_5km.jpeg
1.1 MB
coef_lat_mnanom_5km_GAM.jpeg
869.5 kB
coef_order_mnanom_5km.jpeg
1.4 MB
coef_order_mnanom_5km_GAM.jpeg
1.1 MB
coef_weather_vars.jpeg
768.7 kB
coefficient_diagram.jpeg
183.1 kB
density_dependence_term_test.jpeg
356.4 kB
life_history_abundance_coef.jpeg
1.4 MB
life_history_coefficients_binned.jpeg
3.6 MB
life_history_weathercoef.jpeg
1.3 MB
linear_gam_comparison.jpeg
254.2 kB
mam_precip_tree.jpeg
1.3 MB
mam_precip_tree.pdf
19.4 kB
mam_temp_tree.jpeg
1.3 MB
mam_temp_tree.pdf
19.5 kB
model_equation.png
12.5 kB
overall_coefficients_mnanom_5km.jpeg
294.8 kB
overall_coefficients_mnanom_5km_GAM.jpeg
165.8 kB
precip_effect_comparison.jpeg
564.4 kB
raw_anomaly_life_history_check.jpeg
1.1 MB
scale_weather_coef.jpeg
361.8 kB
species_anomal_pgr.jpeg
2.8 MB
temp_effect_comparison.jpeg
618.6 kB
results
UCloud_gamma_models
posterior_summary_Gamma.RData
10.3 kB
precip_lh_uni_gamma.RDS
41.0 MB
precipitation_model_comparisons.RData
1.3 kB
precipitation_model_selection.png
90.2 kB
precipitation_univariate_model_comparisons.RData
799 Bytes
temp_lh_uni_gamma.rds
41.7 MB
temperature_model_comparisons.RData
1.3 kB
temperature_model_selection.png
102.2 kB
temperature_univariate_model_comparisons.RData
789 Bytes
gaussian_models
model_comparison_precip_rawcoef.RData
310 Bytes
model_comparison_precipvar_rawcoef.RData
308 Bytes
model_comparison_temp_rawcoef.RData
307 Bytes
model_comparison_tempvar_rawcoef.RData
306 Bytes
precip_biome_rawcoef.RData
31.2 MB
precipvar_biome_rawcoef.RData
31.1 MB
temp_biome_rawcoef.RData
31.9 MB
temp_lon_biome_posteriorsamples.RData
1.9 kB
tempvar_biome_rawcoef.RData
31.1 MB
lognormal_models
.DS_Store
6.1 kB
precip_lh_uni.RData
39.9 MB
precip_modcomp_lognormal.RData
908 Bytes
temp_lh_uni.RData
41.0 MB
temp_modcomp_lognormal.RData
911 Bytes
weather_population_growth
GAM_populationgrowth_rates_spatial_autocorrelation.R
2.8 kB
GAM_weather_pop_growth_ALLweathervars.R
6.0 kB
GAM_weather_pop_growth_meananomaly.R
12.1 kB
GAM_weather_variance_pop_growth.R
3.5 kB
README.md
18.3 kB
hypothesis_exploration
GAM_effects_phylogenetic_plots.R
6.4 kB
absolute_weather_effects_exploration.R
6.8 kB
linear_effects_life_history_exploration.R
12.5 kB
raw_weather_anomalies_life_history.R
4.8 kB
varying_methods_individual
annual_mean_anomaly.R
11.3 kB
glmmTMB_weather_popgrowth.R
2.8 kB
naive_weather_populationgrowth_rates.R
2.8 kB
removing_density_dependence.R
4.9 kB
weather_popgrowth_method_comparison.R
6.4 kB
weather_variables
Cloud_scripts
.DS_Store
6.1 kB
chelsa_extraction_1979_1985.R
7.5 kB
chelsa_extraction_1986_1992.R
7.5 kB
chelsa_extraction_1993_1999.R
7.5 kB
chelsa_extraction_2000_2006.R
7.5 kB
chelsa_extraction_2007_2013.R
7.5 kB
README.md
16.4 kB
annual_weather_variables.R
5.3 kB
buffer_example_sdu.R
2.7 kB
chelsa_extraction_pilot.R
11.0 kB
weather_decomposition.R
11.6 kB