Published February 25, 2016
| Version v2.0.0-M7
Software
Open
loquat: loquat v2.0.0-M7
- 1. Era7 Bioinformatics
- 2. oh no sequences! - Era7 bioinformatics
Description
-
Data mappings:
- #45: Changed DataMappings remoteInput/Output from records to simple Maps
- Added an option to the config to switch on/off input objects existence check
- #44: Renamed DataMapping's id to label
- #47: Added a logger message and some kind of progress output for the input objects existence check
- #50: Instead of checking input objects object metadata, listing objects with the given prefix
- #52: Added a check for missing/non-needed input/output data keys in the datamappings
-
Data processing:
- #51: Fixed input objects handling by passing the map of (dataKey.label -> fileLocation) from worker to the processing context; this way context.inputFile lookup doesn't rely on conventions and return the actual file location
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Self-termination:
- #48: Added a time deadline for SQS polling
- Added some logging and exception handling to the polling
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Other fixes:
- #49: Removed any worker instance state tagging for now; was causing RequestLimitExceeded on a big autoscaling group with quick tasks
- #43: Changed log messages for downloads/uploads
Files
loquat-v2.0.0-M7.zip
Files
(188.8 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/ohnosequences/loquat/tree/v2.0.0-M7 (URL)