#README file for datasets for Santostefano et al. 2021 Evolution

#Publication title: Indirect genetic and environmental effects on behaviour, morphology, and life-history traits in a wild Eastern chipmunk population
#Santostefano Francesca, Département des Sciences Biologiques, Université du Québec à Montréal, Montréal, Canada 
#santostefano.francesca@courrier.uqam.ca

#Data Collection range: 2006-2018, Reserve Naturelle des Montagnes Verdes, Québec, Canada
#For methods of data collection and analyses, please see details in the paper
#Software used for analyses: R (https://www.r-project.org/), ASREML(https://www.vsni.co.uk/software/asreml)


#Dataset used in the paper

1) traits with repeated measures per individual per season (exploration, docility, body mass); 
2) traits with one measure per individual per season (relative fecundity, core range area, trappability); 
3) traits with one measure per individual per lifetime (longevity, age at sexual maturation)

###DATASET 1

id #focal individual id	
id_season_year #id season year combination	
date 	
weight 	
sac #docility	
year	
site	
yday #day	
season	
season_year #season year combination	
tot_cross #exploration	
sex #recoded as numeric with -0.47 F, 0 NA, 0.52 M		
age	
site_season_year #site season year combination		
neigh1 #id of neighbor 1	
dist1 #distance of neighbor 1	
neigh2	
dist2	
neigh3	
dist3	
neigh4	
dist4	
tot_cross_SC #exploration centered and scaled	
sac_SC	#docility centered and scaled
wt_SC #weight centered and scaled	
age_SC	#age centered and scaled
dens_sc	#density	
season_year_B #season_year of birth	
season_B #season of birth

###DATASET 2
id #focal individual id	
id_season_year #id season year combination		
year	
sex #recoded as numeric with -0.47 F, 0 NA, 0.52 M	
season	
season_year #season year combination		
rel_survival #relative survival	
num_offspring	
age	
site	
site_season_year #site season year combination		
dens #density	
area #core range area	
num_captures	
neigh1 #id of neighbor 1	
dist1 #distance of neighbor 1	
neigh2	
dist2	
neigh3	
dist3	
neigh4	
dist4	
rel_num_offspring #relative number of offspring	
age_SC	#age centered and scaled	
rel_survival_SC	#relative survival centered and scaled
num_offspring_SC #number of offspring centered and scaled	
rel_num_offspring_SC #relative number of offspring centered and scaled	
num_capt_SC #number of captures centered and scaled
area_SC	#core range area centered and scaled
season_year_B #season_year of birth centered and scaled	
season_B #season of birth centered and scaled

### DATASET 3

id #focal individual id	
id_season_year_B #id season year of birth combination	
Site	
Year_birth	
Cohort_birth	
Sex #recoded as numeric with -0.47 F, 0 NA, 0.52 M	 
Lifespandaysafteremergence #lifespan in days after emergence		
Age_sexualmaturitydaysafteremergence #age at sexual maturity in days after emergence	
season_year_B #season year of birth combination	
age_B #age 	
dens_B #density in year of birth		
neigh1_B #neighbor 1 in year of birth	
dist1_B	#distance with neighbor 1 at year of birth
neigh2_B	
dist2_B	
neigh3_B	
dist3_B	
neigh4_B	
dist4_B			
age_B_SC #age centered and scaled	
dens_B_SC #density centered and scaled 		
Lifespan_DAE_SC	#lifespan centered and scaled
Sexmat_DAE_SC #age at sexual maturity centered and scaled	
season_B #season of birth