"week","block","genotype","trt","rep","PD_symptoms_index","test_plant_infection","notes","nbugs","totalInfectious","propInfectious","plantID","xfpop","Rep2","mu1","mu2","p1","p2"
2,"1","007","S",1,0,0,NA,8,1,0.125,"2-1-007-1",9e+07,1,0.00519316725671275,0.00575186157521894,0.385188874312502,0.604809358390303
2,"1","092","S",1,0,1,"PS plant positive",8,1,0.125,"2-1-092-1",100,1,0.21506123387858,0.0227082113392727,0.594116127810348,0.740836843621799
2,"1","094","R",1,0,0,NA,8,0,0,"2-1-094-1",10900,1,0.0338226525073317,0.00530084980508928,0.390376287383033,0.400147907111727
2,"1","102","R",1,0,0,NA,7,1,0.142857142857143,"2-1-102-1",0,1,0.0189919223418806,0.00721271885880867,0.157722661400259,0.209912973519746
2,"1","007","S",2,0,0,NA,7,0,0,"2-1-007-2",2.91e+08,2,0.0625507998918902,0.0740438012287597,1.1528504013839,0.260895028517515
2,"1","092","S",2,0,1,"Test 1: Lots of contamination, occludes the streaks",6,3,0.5,"2-1-092-2",3.36e+08,2,0.0451803199817835,0.217221499884379,2.58890903233475,2.33777668166116
2,"1","094","R",2,0,0,NA,7,1,0.142857142857143,"2-1-094-2",100,2,0.0268147502968719,0.00244911627772157,1.22640375222138,1.22640375222138
2,"1","102","R",2,0,0,NA,8,0,0,"2-1-102-2",9090000,2,0.00698396437346533,0.00744902910291004,0.422251591807077,0.431534655003326
2,"1","007","S",3,0,0,NA,8,1,0.125,"2-1-007-3",36400000,3,0.0846826360441617,0.0718040202310829,3.00222848466336,3.19621466581027
2,"1","092","S",3,0,0,NA,6,0,0,"2-1-092-3",4.18e+08,3,0.10511994296432,0.00199971734144401,0.857679187559971,0.887440880294747
2,"1","094","R",3,0,0,NA,4,0,0,"2-1-094-3",2360000,3,0.0122013171588733,1.88968385655476,0.64587540999205,0.11820799056199
2,"1","102","R",3,0,0,NA,6,2,0.333333333333333,"2-1-102-3",18200000,3,0.044103082447552,0.256398998508934,0.46857564797086,0.430298134969961
2,"1","007","S",4,0,0,"PS plant positive",8,1,0.125,"2-1-007-4",1.6e+08,4,0.184160760118527,0.136090370197494,0.726828482391262,0.969486739057367
2,"1","092","S",4,0,0,"PS plant positive",7,3,0.428571428571429,"2-1-092-4",1.7e+08,4,7.67996449445119,0.00200365950784906,2.1443569863934,2.26085835407632
2,"1","094","R",4,0,1,"PS plant positive",8,1,0.125,"2-1-094-4",3.73e+08,4,0.180654280446149,0.10189216362526,0.247134948422742,1.28065531528515
2,"1","102","R",4,0,1,"PS plant positive",7,1,0.142857142857143,"2-1-102-4",90900000,4,0.304043243016013,0.209306196640981,0.760443003804888,0.912082649938904
2,"2","007","S",1,0,0,NA,6,0,0,"2-2-007-1",63600000,5,0.0132663888726565,0.0100747507835062,0.902650122901095,0.927162614972584
2,"2","092","S",1,0,0,NA,6,1,0.166666666666667,"2-2-092-1",6450000,5,0.0236065815663737,0.0193789807655986,0.592035921528693,0.634447831258852
2,"2","094","R",1,0,0,NA,8,0,0,"2-2-094-1",1e+07,5,9.99488682201948e-05,9.99488682201948e-05,0.889838873904195,0.893125620063957
2,"2","102","R",1,0,0,NA,7,0,0,"2-2-102-1",0,5,0.0304588182453747,0.0606999707221093,0.821431637042586,0.341373022664218
2,"2","007","S",2,0,0,NA,8,1,0.125,"2-2-007-2",5180000,6,0.000784465517821987,0.180572465180571,0.675218395879978,0.313323495294205
2,"2","092","S",2,0,0,NA,6,0,0,"2-2-092-2",100,6,0.00591056332954362,0.00909243348187717,1.14670369714511,0.875168554417729
2,"2","094","R",2,0,0,NA,6,0,0,"2-2-094-2",1640000,6,0.0178632263265118,0.0233308242170881,0.509413296084758,0.441156137834502
2,"2","102","R",2,0,0,NA,7,0,0,"2-2-102-2",100,6,0.000249971902504423,9.97177657728334e-05,0.913756219959164,0.558360384507133
2,"2","007","S",3,0,0,NA,7,0,0,"2-2-007-3",45500000,7,0.00026964828154743,9.99378776607338e-05,0.587018679376527,0.566848784430643
2,"2","092","S",3,0,0,NA,4,0,0,"2-2-092-3",18200000,7,0.06690318260358,0.062968864585048,6.87137489632991,6.74161217631952
2,"2","094","R",3,0,0,NA,3,0,0,"2-2-094-3",100,7,0.0108589036844127,0.139029503251216,0.590283702917295,0.480842106528974
2,"2","102","R",3,0,0,NA,7,0,0,"2-2-102-3",1090000,7,0.0438962537354476,0.0255818321978993,0.492544472073756,0.61564532452163
2,"3","007","S",4,0,0,NA,6,1,0.166666666666667,"2-3-007-4",7800000,8,9.99132431457576e-05,9.99132431457576e-05,0.276222731895331,0.303303515538288
2,"2","092","S",4,0,0,NA,7,0,0,"2-2-092-4",1820000,8,0.109831976002928,0.0583973407485726,0.659539097246367,0.873281666749386
2,"2","094","R",4,0,0,NA,7,0,0,"2-2-094-4",9090000,8,0.389102861513287,0.0194207842659494,0.921316429077655,1.03933655178055
2,"3","102","R",4,0,0,NA,8,0,0,"2-3-102-4",44400000,8,0.0279927591020795,0.0259124427232022,0.489529918933979,0.780652154456408
5,"1","007","S",1,1,0,NA,7,0,0,"5-1-007-1",1.22e+08,1,0.409754720724636,3.08273155228694,5.39118487755622,4.22409227627861
5,"1","092","S",1,1,0,NA,7,0,0,"5-1-092-1",1.73e+08,1,0.251914259500003,0.00123734877826637,0.580114493397822,0.580114493397822
5,"1","094","R",1,0,0,NA,8,0,0,"5-1-094-1",1.09e+08,1,7.6269540486105,0.347436540785289,4.61621247063403,5.19128182296662
5,"1","102","R",1,0,0,NA,8,2,0.25,"5-1-102-1",2.27e+08,1,0.0800660302680438,0.0591875899930212,1.10826556014558,1.10826556014558
5,"1","007","S",2,0,0,NA,8,1,0.125,"5-1-007-2",1.09e+09,2,0.460533610942066,0.903466434842283,2.83109607645808,1.68598189956328
5,"1","092","S",2,1,1,NA,7,2,0.285714285714286,"5-1-092-2",1.5e+08,2,0.0626302422501545,0.0149569353530017,2.41749081667729,2.49388807142489
5,"1","094","R",2,0,0,NA,7,1,0.142857142857143,"5-1-094-2",27300000,2,0.261174189509944,0.0164303181034684,0.939630552002802,1.8944532787188
5,"1","102","R",2,0,1,NA,8,1,0.125,"5-1-102-2",9090000,2,0.0939083716123903,0.090885666967878,1.43771499049306,1.49866716483244
5,"1","007","S",3,0,0,NA,8,1,0.125,"5-1-007-3",1.87e+09,3,9.9857445980922e-05,0.000223950254605083,2.09478265424118,2.10473579154242
5,"1","092","S",3,0,0,NA,8,2,0.25,"5-1-092-3",100,3,0.0695859436844031,0.0695859436844031,5.24408085390422,0.46376344496889
5,"1","094","R",3,0,0,NA,8,1,0.125,"5-1-094-3",0,3,0.167286721722157,0.138048174673682,0.135984934952216,1.82975576464709
5,"1","102","R",3,0,0,NA,8,0,0,"5-1-102-3",0,3,0.214995277819375,0.159553158723388,2.07110573164344,2.15760212865637
5,"1","007","S",4,1,1,NA,8,1,0.125,"5-1-007-4",5.45e+08,4,5.72689752415134,0.208637856564084,3.19678523891469,5.15716472690954
5,"1","092","S",4,1,0,NA,6,3,0.5,"5-1-092-4",1.2e+09,4,0.156043964253409,0.250299978366124,2.26783672032653,1.02341476241993
5,"1","094","R",4,0,0,NA,8,0,0,"5-1-094-4",1.3e+08,4,0.0625230508833187,0.0374111244562263,2.27599719441215,3.1668786603892
5,"1","102","R",4,0,0,NA,7,2,0.285714285714286,"5-1-102-4",90900,4,0.124934385605921,0.125317652425293,1.32277868606545,1.3422880492185
5,"2","007","S",1,NA,0,NA,8,0,0,"5-2-007-1",2.91e+08,5,0.0866411597317384,0.183146473929311,1.90950474054022,1.15218335335213
5,"2","092","S",1,NA,0,NA,8,8,1,"5-2-092-1",3.55e+08,5,0.000730710610735976,7.05203770881558,0.27206774980307,0.229667562515097
5,"2","094","R",1,NA,0,NA,6,0,0,"5-2-094-1",2e+07,5,0.063990487076248,0.0714268751936395,0.82776501992339,0.809548557253078
5,"2","102","R",1,NA,0,NA,8,0,0,"5-2-102-1",5e+07,5,0.0732051312029735,0.0836163300034804,0.519281700461683,0.433385241493499
5,"2","007","S",2,NA,0,NA,8,0,0,"5-2-007-2",3.36e+08,6,7.75969312204743,0.18817479476388,1.97158759569742,1.97158759569742
5,"2","092","S",2,NA,0,NA,8,0,0,"5-2-092-2",7e+07,6,1.56417353713149,0.311709703542287,0.82051005721652,1.96167162756022
5,"2","094","R",2,NA,0,NA,8,0,0,"5-2-094-2",81800000,6,0.0875683132479381,0.0875683132479381,0.178587956719163,1.69674341009348
5,"2","102","R",2,NA,1,NA,8,2,0.25,"5-2-102-2",54500000,6,0.0636250565491902,0.0627585439547404,0.4513983123396,0.452915861785965
5,"2","007","S",3,NA,0,NA,8,0,0,"5-2-007-3",1.36e+08,7,0.0266697473970134,1.62541577298558,0.512654792967778,0.497764651797986
5,"2","092","S",3,NA,1,NA,7,2,0.285714285714286,"5-2-092-3",1e+08,7,0.000388723856537638,9.99483329656667e-05,0.339916989090401,0.338616335237484
5,"2","094","R",3,NA,0,NA,7,0,0,"5-2-094-3",90900,7,0.00235653241815575,0.00235653241815575,0.539869795911448,0.0513028652355944
5,"2","102","R",3,NA,0,NA,8,1,0.125,"5-2-102-3",0,7,0.0754930997763303,0.0767978293781772,0.554949555421983,0.515190679559927
5,"2","007","S",4,NA,1,NA,7,2,0.285714285714286,"5-2-007-4",2e+08,8,0.925265313943098,0.24212559342633,0.666866511284043,1.89811019426537
5,"2","092","S",4,NA,0,NA,8,0,0,"5-2-092-4",1.2e+08,8,0.168156920906602,0.168156920906602,0.0399956813653233,1.60660843615361
5,"2","094","R",4,NA,0,NA,8,4,0.5,"5-2-094-4",6e+06,8,0.138549968133596,0.122926268629684,1.1690348402596,1.24062172577801
5,"2","102","R",4,NA,0,NA,8,1,0.125,"5-2-102-4",11300000,8,0.123556628540853,0.131266294158433,0.677576751859252,0.646082841909855
8,"1","007","S",1,0,1,NA,7,5,0.714285714285714,"8-1-007-1",2.18e+08,1,0.484739339235963,0.232644989973056,0.0847481048373209,2.15030010230812
8,"1","092","S",1,1,0,"PS plant positive",8,8,1,"8-1-092-1",54500000,1,0.0592908077839936,0.0505552067345017,0.480625859179035,0.494679642738167
8,"1","094","R",1,1,0,NA,8,8,1,"8-1-094-1",9090000,1,0.692193902500994,0.0164616121796023,0.0435695270920496,0.775907558867578
8,"1","102","R",1,0,1,NA,8,5,0.625,"8-1-102-1",36400000,1,0.0839215543451297,0.0751833583553842,0.313551223100166,0.335880127197164
8,"1","007","S",2,1,0,"Culture 1: A single colony on the plate -- cross contamination?",6,6,1,"8-1-007-2",2.09e+08,2,0.18158169187945,0.18158169187945,9.72507196900704e-05,4.44267618644453
8,"1","092","S",2,0,0,NA,7,0,0,"8-1-092-2",4.55e+08,2,1.49158140391079,0.150423785793353,0.849300740890349,1.79516329406218
8,"1","094","R",2,0,0,NA,8,8,1,"8-1-094-2",7100000,2,0.173861920923123,0.530350079770608,0.936017925069396,3.2662445494328
8,"1","102","R",2,0,1,NA,7,6,0.857142857142857,"8-1-102-2",18200000,2,0.00139795323933526,9.99030454420506e-05,0.213187035482895,0.198959525200815
8,"1","007","S",3,0,0,NA,8,8,1,"8-1-007-3",1.45e+08,3,9.98673198328861e-05,0.001450634194764,0.120883347397205,0.106122447233606
8,"1","092","S",3,0,1,NA,8,8,1,"8-1-092-3",2.73e+08,3,0.0786477603024864,0.076696750915501,0.467339526271676,0.494014505090726
8,"1","094","R",3,0,1,NA,7,2,0.285714285714286,"8-1-094-3",27300000,3,6.65000088207352,0.0943893868978055,1.67162775035474,1.67162775035474
8,"1","102","R",3,1,1,NA,8,5,0.625,"8-1-102-3",9090000,3,0.62742659715028,0.282746648988495,0.076581316507326,0.893634018674777
8,"1","007","S",4,0,0,NA,7,7,1,"8-1-007-4",3.45e+08,4,0.0024553230535216,0.138123247091548,1.0348291710315,0.581387934676573
8,"1","092","S",4,1,0,NA,7,7,1,"8-1-092-4",5.8e+08,4,0.034353125109923,0.0328205917256205,0.36663173088231,0.767580809684956
8,"1","094","R",4,0,1,NA,8,6,0.75,"8-1-094-4",8e+07,4,0.654565260450968,0.623415030363112,6.04569421601685,6.27359004563557
8,"1","102","R",4,1,0,NA,7,0,0,"8-1-102-4",1.45e+08,4,0.0879746640729203,0.00560488514881017,0.280396494327941,0.3609964829168
8,"2","007","S",1,0,1,NA,8,7,0.875,"8-2-007-1",3.91e+08,5,0.00440655753836207,0.00430507414972085,0.478369040648421,0.229223191747802
8,"2","092","S",1,1,0,NA,6,6,1,"8-2-092-1",1.7e+08,5,0.0222742275909556,0.313470335099563,0.474327874641921,0.272722264554801
8,"2","094","R",1,0,0,NA,8,1,0.125,"8-2-094-1",55600000,5,0.0127735262696938,0.0111524581137827,1.21629462240595,1.2814223197387
8,"2","102","R",1,0,0,NA,8,2,0.25,"8-2-102-1",1.22e+08,5,9.99431725333275e-05,9.99431725333275e-05,0.423473222744865,0.435011065982484
8,"2","007","S",2,1,0,NA,7,1,0.142857142857143,"8-2-007-2",2.36e+08,6,0.00743082254551791,0.00671349600410487,0.305098327462422,0.325109915648577
8,"2","092","S",2,2,1,NA,8,8,1,"8-2-092-2",4.64e+08,6,0.0491292459559926,0.0521702317421938,0.52142523582238,0.136589183252517
8,"2","094","R",2,1,0,NA,7,1,0.142857142857143,"8-2-094-2",9090000,6,0.0118462685395136,0.0135354192350961,0.198387019044671,0.199644255139467
8,"2","102","R",2,0,0,NA,8,1,0.125,"8-2-102-2",1.55e+08,6,0.857496643208578,0.0151153577029068,0.0600505699007649,0.71627933371746
8,"2","007","S",3,1,0,NA,8,5,0.625,"8-2-007-3",1.6e+08,7,9.92362307152505e-05,0.717447706834373,0.624528588903419,0.0613892956774338
8,"2","092","S",3,2,0,NA,6,2,0.333333333333333,"8-2-092-3",1.7e+08,7,0.0195950766874662,0.018657872377303,0.294551873930251,0.329663973602179
8,"2","094","R",3,1,1,NA,6,5,0.833333333333333,"8-2-094-3",7e+07,7,0.0612507171054534,0.0487142598141873,0.269019791064734,0.290398569004068
8,"2","102","R",3,0,0,NA,7,0,0,"8-2-102-3",0,7,0.0682719608678948,0.0607183411781634,0.455617362233348,0.486605817028114
8,"2","007","S",4,1,0,"Culture 1: Only a few colonies. Cross-contamination? Need to re-culture",8,2,0.25,"8-2-007-4",2.64e+08,8,6.73436762896524,0.0501681221859128,0.474109317136471,0.676505147714393
8,"2","092","S",4,2,0,NA,7,1,0.142857142857143,"8-2-092-4",4.22e+08,8,1.23644495991195,0.0596932178639411,0.77253903860359,0.943677454543035
8,"2","094","R",4,1,1,NA,8,0,0,"8-2-094-4",1e+07,8,7.99926649041878,0.11961884901298,1.88018530770725,6.21146514616613
8,"2","102","R",4,1,0,NA,8,1,0.125,"8-2-102-4",5400000,8,0.108570767201705,0.0486984491823868,0.475568634988809,1.04958126353075
14,"1","007","S",1,3,0,NA,8,5,0.625,"14-1-007-1",3e+08,1,0.0398360064229263,0.0244906552110643,0.239207261203943,0.242802071901516
14,"1","092","S",1,4,0,NA,6,3,0.5,NA,NA,1,0.145648206462644,0.117612117244847,0.318576049152943,0.323665347548723
14,"1","094","R",1,0,0,NA,8,0,0,"14-1-094-1",16700000,1,7.66207658075027,0.0561453037552835,0.581345291672628,0.581345291672628
14,"1","102","R",1,1,1,NA,7,5,0.714285714285714,"14-1-102-1",1.17e+08,1,0.113787453864242,0.0867817003313223,0.181064233949829,0.372859979366558
14,"1","007","S",2,2,0,NA,7,5,0.714285714285714,"14-1-007-2",45500000,2,0.119515651372667,0.0980207946216215,0.424690186969178,0.464314094906925
14,"1","092","S",2,4,1,NA,6,3,0.5,NA,NA,2,0.165611891484177,0.158250825196885,0.431972445801578,0.440388310310133
14,"1","094","R",2,3,1,NA,7,3,0.428571428571429,"14-1-094-2",38500000,2,0.0556091788478034,0.0564653448149771,0.361779144183519,0.338980902135973
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