# Generated by roxygen2: do not edit by hand

export(blacklist_loci)
export(diagnostic_maf)
export(erase_genotypes)
export(filter_all)
export(filter_fis)
export(filter_genotype_likelihood)
export(filter_het)
export(filter_id_whitelist)
export(filter_individual)
export(filter_loci_blacklist)
export(filter_maf)
export(filter_population)
export(filter_quick)
export(filter_snp_number)
export(genotypes_summary)
export(haplo2colony)
export(haplo2genepop)
export(haplo2genind)
export(haplo2gsi_sim)
export(haplo2hierfstat)
export(missing_genotypes)
export(plink_ibm)
export(plot_boxplot_coverage)
export(plot_boxplot_diversity)
export(plot_boxplot_genotype_likelihood)
export(plot_coverage_imbalance_diagnostic)
export(plot_density_distribution_coverage)
export(plot_density_distribution_genotype_likelihood)
export(plot_density_distribution_het)
export(plot_density_distribution_maf)
export(plot_distribution_diversity)
export(plot_snp_number_loci)
export(plot_snp_position_read)
export(population_map)
export(read_stacks_haplotypes_vcf)
export(read_stacks_vcf)
export(summary_coverage)
export(summary_genotype_likelihood)
export(summary_haplotypes)
export(summary_hapstats)
export(summary_phistats)
export(summary_stats_pop)
export(summary_stats_vcf_tidy)
export(sumstats_prep)
export(table_low_coverage_summary)
export(vcf2betadiv)
export(vcf2genind)
export(vcf2hierfstat)
export(vcf_imputation)
export(whitelist_loci)
export(whitelist_loci_snp)
export(whitelist_loci_vcf)
import(doParallel)
import(dplyr)
import(foreach)
import(ggplot2)
import(lazyeval)
import(parallel)
import(readr)
import(reshape2)
import(stringdist)
import(stringi)
importFrom(stringr,str_pad)
