line |
true |
false |
branch |
47
|
0 |
0 |
if ($line =~ /^\@SQ/)
|
53
|
0 |
0 |
if (defined $man_species)
|
54
|
0 |
0 |
if (defined $species) { }
|
55
|
0 |
0 |
if $man_species ne $species
|
60
|
0 |
0 |
unless defined $species
|
62
|
0 |
0 |
if (defined $man_assembly)
|
63
|
0 |
0 |
if (defined $assembly) { }
|
64
|
0 |
0 |
if $man_assembly ne $assembly
|
69
|
0 |
0 |
unless defined $assembly
|
78
|
0 |
0 |
if (exists $$contigs{$name}) { }
|
79
|
0 |
0 |
unless $contig->compare($$contigs{$name})
|
95
|
0 |
0 |
if ($line =~ /^\@RG/)
|
98
|
0 |
0 |
if ($line =~ /PL:([^\t]+)/) { }
|
100
|
0 |
0 |
if (defined $platform and $platform ne $platform_in)
|
109
|
0 |
0 |
unless exists $$samples{$name}
|