Branch Coverage

lib/Sanger/CGP/Vcf/BamUtil.pm
Criterion Covered Total %
branch 0 30 0.0


line true false branch
47 0 0 if ($line =~ /^\@SQ/)
53 0 0 if (defined $man_species)
54 0 0 if (defined $species) { }
55 0 0 if $man_species ne $species
60 0 0 unless defined $species
62 0 0 if (defined $man_assembly)
63 0 0 if (defined $assembly) { }
64 0 0 if $man_assembly ne $assembly
69 0 0 unless defined $assembly
78 0 0 if (exists $$contigs{$name}) { }
79 0 0 unless $contig->compare($$contigs{$name})
95 0 0 if ($line =~ /^\@RG/)
98 0 0 if ($line =~ /PL:([^\t]+)/) { }
100 0 0 if (defined $platform and $platform ne $platform_in)
109 0 0 unless exists $$samples{$name}