cgpVCFSplit.pl - Splits a VCF file into files of [l] lines, will include the head lines in ever file unless -n is specified.
cgpVCFSplit.pl [-h] -l 1000 -f vcfToSplit.vcf
General Options: --help (-h) Brief documentation --linecount (-l) The number of mutant lines to put in each split file. --nohead (-n) Switch to ignore the header of the file when creating split files. --file (-i) The file to split. --outFile (-o) The base output file name will be <fileName>.[1-n] where n is the number of files created by the split. --skip-validate (-s) Skip the validation step. Optional parameters: --version (-v) Prints version information. Examples: cgpVCFSplit.pl -l 2000 -f thisVCF.vcf -g 1