Basic Statistics
Measure | Value |
---|---|
Filename | SRR10124060_rnaseq.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25172255 |
Sequences flagged as poor quality | 0 |
Sequence length | 10-130 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTGGGCTCATACAATAAAGCCTAGAAAGCCAATAGACATTATTGCTCATA | 44303 | 0.17599932942042737 | No Hit |
GTCTGTTAGTAGTATAGTAATGCCTGCGGCTAGCACTGGTAGTGATAATA | 41436 | 0.16460980551801974 | No Hit |
GGGCAAGTGAGCTTTTTAGTTTGTGTCGGAAGCCTGTAATTACGGCTCCA | 31356 | 0.12456571729469608 | No Hit |
GCGGAATATTAGGCTTCGTTGCTTTGAGGTATGAAGGAAAGGTATTAGGG | 31232 | 0.12407311144750441 | No Hit |
GTCGTGGTATTCCTGAAAGGCCCAGGAAATGTTGAGGGAAGAATGTTATG | 30814 | 0.12241255302713244 | No Hit |
GTGAAATGGAATTTTATCTGCATCTGAGTTTAATCCTGTTGGGTTGTTTG | 28507 | 0.11324770069268725 | No Hit |
GGGGGTTTCATGTTGATAATAGTGGTAATAAAATTAATTGCACCTAAAAT | 28234 | 0.11216317330330555 | No Hit |
GGCTCATACAATAAAGCCTAGAAAGCCAATAGACATTATTGCTCATACTA | 28155 | 0.11184933570711086 | No Hit |
GGCGTTTTGAGGATGGGAATAGGATTGAAGGAAATATAATGATGGCTACA | 27908 | 0.11086809664052744 | No Hit |
GGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCCCAGGAAATGTTG | 27241 | 0.1082183538979722 | No Hit |
GTAGGAGTCAAAAACTTATATTATTTATTCGTGGGAATGCTATATCTGGG | 27194 | 0.10803164039137533 | No Hit |
GTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCCCA | 25413 | 0.10095639027969486 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGAATA | 10995 | 0.0 | 36.263874 | 2 |
GCGGAAT | 11270 | 0.0 | 36.188175 | 1 |
ATTACGG | 8180 | 0.0 | 33.800884 | 38-39 |
CGTAGTA | 6420 | 0.0 | 32.594555 | 3 |
TTGCGTG | 7605 | 0.0 | 27.917469 | 8 |
GTCGGTT | 18490 | 0.0 | 27.898003 | 1 |
TTACGGC | 8160 | 0.0 | 27.709267 | 40-41 |
GTCCGGT | 5475 | 0.0 | 26.556866 | 1 |
TATATCG | 4565 | 0.0 | 26.357857 | 16-17 |
CGAATAG | 10060 | 0.0 | 26.32622 | 114-115 |
CCGGCTA | 9020 | 0.0 | 26.04046 | 120-121 |
GTCCGTT | 5800 | 0.0 | 25.692884 | 1 |
GTTAGTA | 20555 | 0.0 | 25.524214 | 5 |
GTAGTAT | 20860 | 0.0 | 25.07201 | 9 |
CGGATTA | 4995 | 0.0 | 24.633366 | 22-23 |
TCGACTA | 7700 | 0.0 | 24.621912 | 88-89 |
ATCGGAC | 7160 | 0.0 | 24.593945 | 6 |
GTCGGGT | 6565 | 0.0 | 24.445044 | 1 |
GGTTCGA | 6015 | 0.0 | 24.262209 | 4 |
GCGGTCT | 13040 | 0.0 | 24.10483 | 1 |