FastQCFastQC Report
Wed 18 Sep 2019
SRR10124060_rnaseq.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10124060_rnaseq.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25172255
Sequences flagged as poor quality0
Sequence length10-130
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGCTCATACAATAAAGCCTAGAAAGCCAATAGACATTATTGCTCATA443030.17599932942042737No Hit
GTCTGTTAGTAGTATAGTAATGCCTGCGGCTAGCACTGGTAGTGATAATA414360.16460980551801974No Hit
GGGCAAGTGAGCTTTTTAGTTTGTGTCGGAAGCCTGTAATTACGGCTCCA313560.12456571729469608No Hit
GCGGAATATTAGGCTTCGTTGCTTTGAGGTATGAAGGAAAGGTATTAGGG312320.12407311144750441No Hit
GTCGTGGTATTCCTGAAAGGCCCAGGAAATGTTGAGGGAAGAATGTTATG308140.12241255302713244No Hit
GTGAAATGGAATTTTATCTGCATCTGAGTTTAATCCTGTTGGGTTGTTTG285070.11324770069268725No Hit
GGGGGTTTCATGTTGATAATAGTGGTAATAAAATTAATTGCACCTAAAAT282340.11216317330330555No Hit
GGCTCATACAATAAAGCCTAGAAAGCCAATAGACATTATTGCTCATACTA281550.11184933570711086No Hit
GGCGTTTTGAGGATGGGAATAGGATTGAAGGAAATATAATGATGGCTACA279080.11086809664052744No Hit
GGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCCCAGGAAATGTTG272410.1082183538979722No Hit
GTAGGAGTCAAAAACTTATATTATTTATTCGTGGGAATGCTATATCTGGG271940.10803164039137533No Hit
GTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCCCA254130.10095639027969486No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAATA109950.036.2638742
GCGGAAT112700.036.1881751
ATTACGG81800.033.80088438-39
CGTAGTA64200.032.5945553
TTGCGTG76050.027.9174698
GTCGGTT184900.027.8980031
TTACGGC81600.027.70926740-41
GTCCGGT54750.026.5568661
TATATCG45650.026.35785716-17
CGAATAG100600.026.32622114-115
CCGGCTA90200.026.04046120-121
GTCCGTT58000.025.6928841
GTTAGTA205550.025.5242145
GTAGTAT208600.025.072019
CGGATTA49950.024.63336622-23
TCGACTA77000.024.62191288-89
ATCGGAC71600.024.5939456
GTCGGGT65650.024.4450441
GGTTCGA60150.024.2622094
GCGGTCT130400.024.104831