README.txt

Brittin, C., Cook, S, Hall, D.H., Emmons, S., Cohen. N. A multiscale brain map derived from whole-brain volumetric reconstructions. Nature (2021).

@author Christopher Brittin
@date 2020-12-21
@email cabrittin <at> gmail <dot> com

n2u_process_structures/

Support TrakEM2 files for adul process structures for all cells described in Fig 3d-g, Extended Data Fig. 8 and Supplementary Information 4. Only segmentation files for the left cell in each cell class is provided. Segmentation files for the right cell can be generated using parsetrakem2.  Note that in the manuscript only L4 process are shown. 

Files can be opened with TrakEM in the FIJI app. The (uncompressed) mipmaps folder must be in the same directory as the segmentation (xml) file. 

File naming convention:
'cell_name' <- Name of segmented cell in the file.
'dataset' <- Either jsh (L4) or n2u (adult)
'prepost' <- Segmentation colors synapses based on whether it is an import or output (see Extended Data Fig 8)
'cluster' <- Segmentation colors synapses based on wheter the synapse in intra- or inter-cluster (see Extended DAta Fig 8) 
