Preview

karatsang-effector_chaperone_T6SS-c5b2d66
- .DS_Store
  
  14.3 kB
- NCBI_8_Genera
  - 3FA0549C-CB54-11EA-9033-8FD5DBC3747A.2.hmm
    
    53.1 kB
  - 569D480A-C535-11EA-8CA8-D460F75AEC3D.3.hmm
    
    41.6 kB
  - 6A6151C8-CB7B-11EA-9FAA-814CE976C163.3.hmm
    
    175.3 kB
  - 8GENERATREE_COMMANDS.txt
    
    4.5 kB
  - EFFECTORSEQ_REFERENCES.fasta
    
    8.1 kB
  - PAAR_motif.hmm
    
    33.8 kB
  - all_effector_wchap_genus_more100aa.fasta
    
    8.8 MB
  - all_effector_wchap_genus_more100aa_CDHIT95.fasta
    
    1.6 MB
  - all_effector_wchap_genus_more100aa_CDHIT95.fasta.clstr
    
    268.7 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_TM.fasta
    
    1.6 MB
  - all_effector_wchap_genus_more100aa_CDHIT95_TM_ref.fasta
    
    1.6 MB
  - all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft.fasta
    
    7.6 MB
  - all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim.fasta
    
    6.1 MB
  - all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim_tree
    
    183.1 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim_tree_tips.txt
    
    147.0 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim_tree_tips_effcat.tsv
    
    154.0 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim_tree_tips_genera.tsv
    
    156.3 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders.fasta
    
    1.2 MB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_NOPAAR_1.fasta
    
    269.2 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_NOPAAR_2.fasta
    
    17.4 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_NOPAAR_3.fasta
    
    2.1 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_NOPAAR_4.fasta
    
    427 Bytes
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_1.domtblout
    
    362.2 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_1.fasta
    
    929.4 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_1.out
    
    599.9 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_2.domtblout
    
    115.2 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_2.fasta
    
    251.8 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_2.out
    
    152.2 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_3.domtblout
    
    17.5 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_3.fasta
    
    15.3 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_3.out
    
    29.3 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_4.domtblout
    
    3.9 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_4.fasta
    
    1.7 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_4.out
    
    7.1 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_tmhmm.fasta
    
    1.6 MB
  - all_effector_wchap_genus_more100aa_CDHIT95_tmhmm_NOphobius.fasta
    
    137.7 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_tmhmm_phobius.fasta
    
    257.8 kB
  - all_effector_wchap_genus_more100aa_CDHIT95_tmhmm_phobius_expasy.fasta
    
    137.7 kB
  - all_effector_wchap_genus_more100aa_Cterm_150aa_70.fasta
    
    335.6 kB
  - all_effectors_species_rmredun.fasta
    
    9.1 MB
  - domsearch.py
    
    3.1 kB
  - notm_3reg_tmhmm_seq.fasta
    
    395.5 kB
  - phobius.py
    
    2.8 kB
  - phobius_result.txt
    
    209.3 kB
  - rm_100aa.py
    
    567 Bytes
  - tmhmm.py
    
    3.8 kB
  - tmhmm_result.txt
    
    3.5 MB
- README.md
  
  813 Bytes
- UniProtKB
  - .DS_Store
    
    6.1 kB
  - EFFECTORSEQ_REFERENCES.fasta
    
    8.1 kB
  - Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_tothom.fasta
    
    158.4 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species.fasta
    
    2.3 MB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100.fasta
    
    2.3 MB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95.fasta
    
    1.1 MB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95.fasta.clstr
    
    93.4 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_NOPAAR_1.fasta
    
    279.2 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_NOPAAR_2.fasta
    
    34.3 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_NOPAAR_3.fasta
    
    8.8 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_NOPAAR_4.fasta
    
    576 Bytes
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_1.domtblout
    
    416.7 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_1.fasta
    
    795.7 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_1.out
    
    567.0 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_2.domtblout
    
    119.8 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_2.fasta
    
    244.9 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_2.out
    
    145.4 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_3.domtblout
    
    25.1 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_3.fasta
    
    25.5 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_3.out
    
    28.7 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_4.domtblout
    
    6.9 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_4.fasta
    
    8.2 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_4.out
    
    9.2 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM.fasta
    
    1.1 MB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref.fasta
    
    1.1 MB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft.fasta
    
    4.9 MB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim.fasta
    
    3.9 MB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim_tree
    
    77.5 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim_tree_effcat.tsv
    
    53.2 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim_tree_genus.tsv
    
    55.2 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim_tree_tips.txt
    
    47.4 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_tmhmm.fasta
    
    1.1 MB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_tmhmm_NOphobius.fasta
    
    21.0 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_tmhmm_phobius.fasta
    
    63.4 kB
  - Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_tmhmm_phobius_expasy.fasta
    
    21.0 kB
  - UniProtKBTREE_COMMANDS.txt
    
    4.8 kB
  - domsearch.py
    
    3.1 kB
  - notm_3reg_tmhmm_seq.fasta
    
    84.4 kB
  - phobius.py
    
    4.0 kB
  - phobius_result.txt
    
    14.9 kB
  - rm_100aa.py
    
    613 Bytes
  - species_rename.py
    
    2.0 kB
  - tmhmm.py
    
    4.5 kB
  - tmhmm_result.txt
    
    795.8 kB
- ZnBindingResidues
  - .DS_Store
    
    6.1 kB
  - Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR.fasta
    
    2.0 MB
  - Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_mafft.fasta
    
    8.5 MB
  - Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_mafft_trim.fasta
    
    1.8 MB
  - Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_mafft_trim_fix.fasta
    
    1.7 MB
  - Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_trunc300aa.fasta
    
    614.4 kB
  - Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_trunc300aa_HMM.domtblout
    
    531.6 kB
  - Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_trunc300aa_HMM.fasta
    
    277.4 kB
  - Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_trunc300aa_hmm.out
    
    995.9 kB
  - PAARsequences.fasta
    
    1.1 kB
  - PAARsequences_hmm.hmm
    
    39.6 kB
  - PAARsequences_mafft.fasta
    
    1.7 kB
  - PAARsequences_mafft_trim.fasta
    
    1.4 kB
  - ZN_LONGPAAR_1-100.svg
    
    2.8 MB
  - ZN_LONGPAAR_100-200.svg
    
    2.8 MB
  - ZN_SHORTPAAR_1-100.svg
    
    2.7 MB
  - ZN_SHORTPAAR_100-200.svg
    
    2.7 MB
  - commands.txt
    
    4.0 kB
  - domsearch.py
    
    2.6 kB
  - getshortPAAR.py
    
    1.2 kB
  - logo_seq_longPAAR.py
    
    1.7 kB
  - logo_seq_shortPAAR.py
    
    1.5 kB
  - shortPAAR_PF05488_full_length_sequences.fasta
    
    289.4 kB
  - shortPAAR_PF05488_full_length_sequences_prePAAR.fasta
    
    83.0 kB
  - shortPAAR_PF05488_full_length_sequences_prePAAR_less250aa.fasta
    
    66.0 kB
  - shortPAAR_PF05488_full_length_sequences_prePAAR_mafft.fasta
    
    1.7 MB
  - shortPAAR_PF05488_full_length_sequences_prePAAR_mafft_trim.fasta
    
    175.4 kB
  - shortPAAR_PF05488_full_length_sequences_prePAAR_mafft_trim_fix.fasta
    
    173.2 kB
  - shortPAAR_motif.tsv
    
    288.0 kB
  - short_HMMtrunclongPAAR.fasta
    
    343.4 kB
  - short_HMMtrunclongPAAR_mafft.fasta
    
    1.9 MB
  - short_HMMtrunclongPAAR_mafft_trim.fasta
    
    1.5 MB
  - short_HMMtrunclongPAAR_mafft_trim_tree
    
    148.9 kB
  - short_HMMtrunclongPAAR_mafft_trim_tree_tipcat.tsv
    
    120.7 kB
  - short_trunclongPAAR.fasta
    
    680.4 kB
  - short_trunclongPAAR_mafft.fasta
    
    3.9 MB
  - short_trunclongPAAR_mafft_trim.fasta
    
    3.2 MB
  - short_trunclongPAAR_mafft_trim_tree
    
    156.3 kB
  - short_trunclongPAAR_mafft_trim_tree_tip_cat.tsv
    
    120.7 kB
  - truncate_longPAAR.py
    
    1.1 kB

karatsang/effector_chaperone_T6SS-v1.0.zip