karatsang/effector_chaperone_T6SS-v1.0.zip
karatsang-effector_chaperone_T6SS-c5b2d66
.DS_Store
14.3 kB
NCBI_8_Genera
3FA0549C-CB54-11EA-9033-8FD5DBC3747A.2.hmm
53.1 kB
569D480A-C535-11EA-8CA8-D460F75AEC3D.3.hmm
41.6 kB
6A6151C8-CB7B-11EA-9FAA-814CE976C163.3.hmm
175.3 kB
8GENERATREE_COMMANDS.txt
4.5 kB
EFFECTORSEQ_REFERENCES.fasta
8.1 kB
PAAR_motif.hmm
33.8 kB
all_effector_wchap_genus_more100aa.fasta
8.8 MB
all_effector_wchap_genus_more100aa_CDHIT95.fasta
1.6 MB
all_effector_wchap_genus_more100aa_CDHIT95.fasta.clstr
268.7 kB
all_effector_wchap_genus_more100aa_CDHIT95_TM.fasta
1.6 MB
all_effector_wchap_genus_more100aa_CDHIT95_TM_ref.fasta
1.6 MB
all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft.fasta
7.6 MB
all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim.fasta
6.1 MB
all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim_tree
183.1 kB
all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim_tree_tips.txt
147.0 kB
all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim_tree_tips_effcat.tsv
154.0 kB
all_effector_wchap_genus_more100aa_CDHIT95_TM_ref_mafft_trim_tree_tips_genera.tsv
156.3 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders.fasta
1.2 MB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_NOPAAR_1.fasta
269.2 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_NOPAAR_2.fasta
17.4 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_NOPAAR_3.fasta
2.1 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_NOPAAR_4.fasta
427 Bytes
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_1.domtblout
362.2 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_1.fasta
929.4 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_1.out
599.9 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_2.domtblout
115.2 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_2.fasta
251.8 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_2.out
152.2 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_3.domtblout
17.5 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_3.fasta
15.3 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_3.out
29.3 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_4.domtblout
3.9 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_4.fasta
1.7 kB
all_effector_wchap_genus_more100aa_CDHIT95_shortheaders_PAAR_4.out
7.1 kB
all_effector_wchap_genus_more100aa_CDHIT95_tmhmm.fasta
1.6 MB
all_effector_wchap_genus_more100aa_CDHIT95_tmhmm_NOphobius.fasta
137.7 kB
all_effector_wchap_genus_more100aa_CDHIT95_tmhmm_phobius.fasta
257.8 kB
all_effector_wchap_genus_more100aa_CDHIT95_tmhmm_phobius_expasy.fasta
137.7 kB
all_effector_wchap_genus_more100aa_Cterm_150aa_70.fasta
335.6 kB
all_effectors_species_rmredun.fasta
9.1 MB
domsearch.py
3.1 kB
notm_3reg_tmhmm_seq.fasta
395.5 kB
phobius.py
2.8 kB
phobius_result.txt
209.3 kB
rm_100aa.py
567 Bytes
tmhmm.py
3.8 kB
tmhmm_result.txt
3.5 MB
README.md
813 Bytes
UniProtKB
.DS_Store
6.1 kB
EFFECTORSEQ_REFERENCES.fasta
8.1 kB
Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_tothom.fasta
158.4 kB
Full_fasta_60aa_PA0093_query_6iterations_species.fasta
2.3 MB
Full_fasta_60aa_PA0093_query_6iterations_species_more100.fasta
2.3 MB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95.fasta
1.1 MB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95.fasta.clstr
93.4 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_NOPAAR_1.fasta
279.2 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_NOPAAR_2.fasta
34.3 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_NOPAAR_3.fasta
8.8 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_NOPAAR_4.fasta
576 Bytes
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_1.domtblout
416.7 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_1.fasta
795.7 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_1.out
567.0 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_2.domtblout
119.8 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_2.fasta
244.9 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_2.out
145.4 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_3.domtblout
25.1 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_3.fasta
25.5 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_3.out
28.7 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_4.domtblout
6.9 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_4.fasta
8.2 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_PAAR_4.out
9.2 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM.fasta
1.1 MB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref.fasta
1.1 MB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft.fasta
4.9 MB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim.fasta
3.9 MB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim_tree
77.5 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim_tree_effcat.tsv
53.2 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim_tree_genus.tsv
55.2 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_TM_ref_mafft_trim_tree_tips.txt
47.4 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_tmhmm.fasta
1.1 MB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_tmhmm_NOphobius.fasta
21.0 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_tmhmm_phobius.fasta
63.4 kB
Full_fasta_60aa_PA0093_query_6iterations_species_more100_CDHIT95_tmhmm_phobius_expasy.fasta
21.0 kB
UniProtKBTREE_COMMANDS.txt
4.8 kB
domsearch.py
3.1 kB
notm_3reg_tmhmm_seq.fasta
84.4 kB
phobius.py
4.0 kB
phobius_result.txt
14.9 kB
rm_100aa.py
613 Bytes
species_rename.py
2.0 kB
tmhmm.py
4.5 kB
tmhmm_result.txt
795.8 kB
ZnBindingResidues
.DS_Store
6.1 kB
Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR.fasta
2.0 MB
Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_mafft.fasta
8.5 MB
Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_mafft_trim.fasta
1.8 MB
Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_mafft_trim_fix.fasta
1.7 MB
Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_trunc300aa.fasta
614.4 kB
Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_trunc300aa_HMM.domtblout
531.6 kB
Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_trunc300aa_HMM.fasta
277.4 kB
Full_fasta_60aa_PA0093_query_6iterations_renamed_tmhmm_phobius_expasy_more100_prePAAR_trunc300aa_hmm.out
995.9 kB
PAARsequences.fasta
1.1 kB
PAARsequences_hmm.hmm
39.6 kB
PAARsequences_mafft.fasta
1.7 kB
PAARsequences_mafft_trim.fasta
1.4 kB
ZN_LONGPAAR_1-100.svg
2.8 MB
ZN_LONGPAAR_100-200.svg
2.8 MB
ZN_SHORTPAAR_1-100.svg
2.7 MB
ZN_SHORTPAAR_100-200.svg
2.7 MB
commands.txt
4.0 kB
domsearch.py
2.6 kB
getshortPAAR.py
1.2 kB
logo_seq_longPAAR.py
1.7 kB
logo_seq_shortPAAR.py
1.5 kB
shortPAAR_PF05488_full_length_sequences.fasta
289.4 kB
shortPAAR_PF05488_full_length_sequences_prePAAR.fasta
83.0 kB
shortPAAR_PF05488_full_length_sequences_prePAAR_less250aa.fasta
66.0 kB
shortPAAR_PF05488_full_length_sequences_prePAAR_mafft.fasta
1.7 MB
shortPAAR_PF05488_full_length_sequences_prePAAR_mafft_trim.fasta
175.4 kB
shortPAAR_PF05488_full_length_sequences_prePAAR_mafft_trim_fix.fasta
173.2 kB
shortPAAR_motif.tsv
288.0 kB
short_HMMtrunclongPAAR.fasta
343.4 kB
short_HMMtrunclongPAAR_mafft.fasta
1.9 MB
short_HMMtrunclongPAAR_mafft_trim.fasta
1.5 MB
short_HMMtrunclongPAAR_mafft_trim_tree
148.9 kB
short_HMMtrunclongPAAR_mafft_trim_tree_tipcat.tsv
120.7 kB
short_trunclongPAAR.fasta
680.4 kB
short_trunclongPAAR_mafft.fasta
3.9 MB
short_trunclongPAAR_mafft_trim.fasta
3.2 MB
short_trunclongPAAR_mafft_trim_tree
156.3 kB
short_trunclongPAAR_mafft_trim_tree_tip_cat.tsv
120.7 kB
truncate_longPAAR.py
1.1 kB